Query 020845
Match_columns 320
No_of_seqs 196 out of 1623
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts7_A Geranyltranstransferase 100.0 2.1E-59 7.1E-64 445.7 26.6 246 35-291 2-251 (324)
2 3lsn_A Geranyltranstransferase 100.0 1.1E-58 3.8E-63 437.7 27.7 240 41-291 2-245 (304)
3 4f62_A Geranyltranstransferase 100.0 1.3E-58 4.6E-63 439.0 26.0 238 41-291 4-244 (317)
4 3pde_A Farnesyl-diphosphate sy 100.0 3.3E-59 1.1E-63 441.7 19.2 237 41-291 7-247 (309)
5 3lom_A Geranyltranstransferase 100.0 2.7E-58 9.3E-63 436.5 24.1 244 36-291 3-252 (313)
6 2h8o_A Geranyltranstransferase 100.0 3.4E-58 1.2E-62 439.6 24.7 241 39-291 36-284 (335)
7 3m0g_A Farnesyl diphosphate sy 100.0 4.6E-58 1.6E-62 432.3 23.9 236 41-291 2-238 (297)
8 3llw_A Geranyltranstransferase 100.0 1.3E-57 4.5E-62 431.5 23.6 236 39-291 5-250 (311)
9 3p8l_A Geranyltranstransferase 100.0 1.4E-57 4.7E-62 429.7 22.7 233 45-291 13-248 (302)
10 1rqj_A Geranyltranstransferase 100.0 4.1E-57 1.4E-61 426.6 24.8 239 42-291 3-245 (299)
11 3qkc_B Geranyl diphosphate syn 100.0 4.5E-56 1.6E-60 414.4 30.7 255 39-309 3-258 (273)
12 3p8r_A Geranyltranstransferase 100.0 1.8E-57 6E-62 429.3 17.6 237 44-291 11-251 (302)
13 3uca_A Geranyltranstransferase 100.0 3.3E-57 1.1E-61 430.6 18.7 235 44-291 35-273 (324)
14 1rtr_A Geranyltranstransferase 100.0 2.6E-56 8.9E-61 421.4 22.4 230 49-291 9-240 (301)
15 2j1p_A Geranylgeranyl pyrophos 100.0 5.8E-56 2E-60 417.6 23.8 265 41-313 12-291 (293)
16 3oyr_A Trans-isoprenyl diphosp 100.0 1.8E-55 6.3E-60 422.3 27.5 250 38-310 23-283 (345)
17 3kra_B Geranyl diphosphate syn 100.0 3.9E-55 1.3E-59 408.2 28.1 254 43-309 2-260 (274)
18 3npk_A Geranyltranstransferase 100.0 1.6E-55 5.4E-60 413.7 23.3 226 49-288 5-234 (291)
19 3mzv_A Decaprenyl diphosphate 100.0 4E-55 1.4E-59 419.7 25.4 249 40-310 12-271 (341)
20 4dhd_A Polyprenyl synthetase; 100.0 2.8E-55 9.7E-60 423.2 22.2 259 39-310 3-277 (358)
21 1wy0_A Geranylgeranyl pyrophos 100.0 3.7E-55 1.3E-59 420.4 22.5 250 43-309 8-268 (342)
22 3nf2_A Putative polyprenyl syn 100.0 1.8E-54 6.3E-59 416.6 23.5 248 41-309 4-273 (352)
23 3rmg_A Octaprenyl-diphosphate 100.0 1E-54 3.5E-59 415.8 19.7 246 41-310 8-264 (334)
24 4fp4_A Polyprenyl synthetase; 100.0 6.4E-55 2.2E-59 407.6 15.8 243 41-316 5-254 (285)
25 2ftz_A Geranyltranstransferase 100.0 3.1E-54 1.1E-58 403.8 19.9 219 50-290 15-234 (284)
26 3lmd_A Geranylgeranyl pyrophos 100.0 9.3E-54 3.2E-58 412.3 20.7 243 41-309 35-289 (360)
27 3aqb_B Component B of hexapren 100.0 5.1E-54 1.7E-58 409.9 17.6 227 42-291 6-233 (325)
28 1wmw_A Geranylgeranyl diphosph 100.0 3.8E-53 1.3E-57 404.6 18.2 242 47-308 6-260 (330)
29 3lk5_A Geranylgeranyl pyrophos 100.0 1.2E-52 3.9E-57 407.6 17.2 248 44-308 20-309 (380)
30 3pko_A Geranylgeranyl pyrophos 100.0 3E-52 1E-56 398.8 19.8 222 47-291 22-246 (334)
31 3ipi_A Geranyltranstransferase 100.0 7.5E-52 2.6E-56 389.6 21.7 205 51-279 12-216 (295)
32 3mav_A Farnesyl pyrophosphate 100.0 8.1E-53 2.8E-57 411.2 15.5 287 12-310 8-336 (395)
33 2qis_A Farnesyl pyrophosphate 100.0 4.3E-52 1.5E-56 403.2 17.5 256 40-309 33-313 (374)
34 2e8v_A Geranylgeranyl pyrophos 100.0 2.3E-52 7.9E-57 400.6 15.2 246 50-310 7-269 (340)
35 3tc1_A Octaprenyl pyrophosphat 100.0 1.2E-51 4.1E-56 391.6 17.5 233 49-309 5-250 (315)
36 1v4e_A Octoprenyl-diphosphate 100.0 6.5E-52 2.2E-56 391.0 15.2 209 52-291 15-225 (299)
37 2ihi_A Pyrophosphate synthase; 100.0 2.2E-51 7.4E-56 400.3 16.6 261 38-309 32-335 (395)
38 3dyh_A Farnesyl pyrophosphate 100.0 3.2E-51 1.1E-55 398.8 15.7 263 36-309 23-327 (390)
39 3apz_A Geranyl diphosphate syn 100.0 2.3E-51 7.8E-56 394.9 14.0 219 50-291 18-256 (348)
40 1yhl_A Farnesyl pyrophosphate 100.0 8.8E-51 3E-55 392.7 17.3 255 41-309 3-299 (362)
41 2q58_A Fragment, farnesyl pyro 100.0 6.5E-52 2.2E-56 401.3 5.8 257 36-311 22-301 (368)
42 1uby_A FPS, farnesyl diphospha 100.0 1.3E-50 4.4E-55 392.0 14.2 255 41-309 27-306 (367)
43 2q80_A Geranylgeranyl pyrophos 100.0 1.8E-50 6.3E-55 381.5 12.2 200 67-291 11-211 (301)
44 2her_A Fragment, farnesyl pyro 100.0 5.5E-51 1.9E-55 393.6 7.6 249 39-310 25-300 (368)
45 2azj_A Geranylgeranyl pyrophos 100.0 2.3E-49 7.7E-54 371.8 17.8 205 42-278 11-216 (289)
46 4hd1_A Squalene synthase HPNC; 81.6 30 0.001 31.3 15.5 72 191-279 107-178 (294)
47 3vj8_A Squalene synthase; farn 74.7 21 0.00072 33.3 10.7 75 193-279 123-197 (343)
48 3acx_A Dehydrosqualene synthas 65.8 14 0.00046 33.5 7.0 72 192-279 112-183 (293)
49 3lom_A Geranyltranstransferase 57.0 34 0.0012 31.4 8.1 84 80-167 189-285 (313)
50 3lsn_A Geranyltranstransferase 53.2 43 0.0015 30.7 8.1 84 80-167 182-278 (304)
51 1rtr_A Geranyltranstransferase 51.1 83 0.0028 28.6 9.7 72 93-167 190-273 (301)
52 4f62_A Geranyltranstransferase 50.8 41 0.0014 31.0 7.6 68 98-167 199-277 (317)
53 3uca_A Geranyltranstransferase 49.5 47 0.0016 30.7 7.8 72 95-168 225-307 (324)
54 2ixm_A Serine/threonine-protei 47.8 86 0.003 28.8 9.1 86 36-122 80-175 (303)
55 2ixn_A Serine/threonine-protei 41.4 1.3E+02 0.0046 27.6 9.3 87 36-122 79-175 (310)
56 3ipi_A Geranyltranstransferase 40.2 1.9E+02 0.0066 26.1 10.3 72 94-167 180-264 (295)
57 3ts7_A Geranyltranstransferase 38.7 66 0.0023 29.7 6.9 68 98-167 206-284 (324)
58 3p8l_A Geranyltranstransferase 38.2 81 0.0028 28.8 7.4 71 94-166 199-280 (302)
59 3m0g_A Farnesyl diphosphate sy 36.4 97 0.0033 28.1 7.6 82 80-167 179-271 (297)
60 3p8r_A Geranyltranstransferase 35.1 44 0.0015 30.5 5.0 67 99-167 207-284 (302)
61 2h8o_A Geranyltranstransferase 34.8 42 0.0014 31.2 4.9 72 94-167 235-317 (335)
62 3pde_A Farnesyl-diphosphate sy 33.3 71 0.0024 29.3 6.1 71 94-166 198-279 (309)
63 3aqb_A Component A of hexapren 32.9 2E+02 0.0068 23.4 10.4 87 43-167 5-91 (147)
64 2ixo_A Serine/threonine-protei 28.1 91 0.0031 28.9 5.9 85 36-122 92-186 (323)
65 3kb9_A EPI-isozizaene synthase 21.2 4.8E+02 0.016 23.9 10.4 77 192-276 188-267 (382)
No 1
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=2.1e-59 Score=445.70 Aligned_cols=246 Identities=20% Similarity=0.265 Sum_probs=210.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHH
Q 020845 35 AMSTPNKNKSYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHV 112 (320)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEl 112 (320)
.+++.++|+.|++...+.||+.|.+.++.. .+..+.++++|.+..||||+||+||+++++++|++.+.+.++|++|||
T Consensus 2 ~~~~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~a~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~avEl 81 (324)
T 3ts7_A 2 VMNPERSLSDFMRSSQERVERALDARLPAADRMPERLHQAMRYSVLGGGKRMRPLLTYATGQTIGVAADLLDGPACAVEF 81 (324)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHTSCCTTSSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCGGGTHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 356677899999999999999999998753 356799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhh
Q 020845 113 MHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQG 192 (320)
Q Consensus 113 iH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~ 192 (320)
||+|||||||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++...+ ..++....+++..++++.|..+
T Consensus 82 iH~aSLIHDDip~mD~-~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~-~~~~~~~~~~i~~la~a~g~~~ 159 (324)
T 3ts7_A 82 IHVYSLIHDDLPAMDD-DDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSI-AVPAENRIAMIETLAKASGPAG 159 (324)
T ss_dssp HHHHHHHHHTSTTTTC-CSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTS-CCCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHhhcCcccccC-CCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999999 7889999999999999999999999999999999987421 1235566788888888877789
Q ss_pred hhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhh
Q 020845 193 VVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGG-GSEKEIELLRRYGFYVGMIQGIVSR 271 (320)
Q Consensus 193 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lG~afQi~DD 271 (320)
|+.||.+|+.+... ..++++|.+|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||
T Consensus 160 m~~GQ~lDl~~~~~---------~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 160 MVGGQAIDLASVGK---------KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp HHHHHHHHHHTTTC---------CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHccCC---------CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998762 3689999999999999999999999999999 8999999999999999999999999
Q ss_pred hcCCchhHHHh-hhHHHHHHH
Q 020845 272 RLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 272 ~lD~~~~~~~~-k~~~~Dl~e 291 (320)
++|++++++++ |++|+|++|
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~e 251 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDH 251 (324)
T ss_dssp HHHHTCC--------------
T ss_pred HHhccCCHHHhCCCccchhhc
Confidence 99999999888 999999976
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=1.1e-58 Score=437.74 Aligned_cols=240 Identities=25% Similarity=0.368 Sum_probs=211.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCC--cccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKE--PVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASF 118 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~--~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asL 118 (320)
+|++|++...+.||+.|.+.++... |..+.++++|.+..||||+||+||+++++++|++.+.+.++|++|||||+|||
T Consensus 2 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asL 81 (304)
T 3lsn_A 2 SLTAYQASSQARVDAAMHTLFTAPSPELARLYEAMRYSVMNGGKRVRPLLAYAACEALGGKPEQANGAACAVELIHAYSL 81 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCCSSGGGHHHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998653 46799999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHH
Q 020845 119 IHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY 198 (320)
Q Consensus 119 IHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~ 198 (320)
||||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++...+ ..++....+++..+++++|..+|+.||.
T Consensus 82 IHDDip~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~a~~~~~~~~GQ~ 159 (304)
T 3lsn_A 82 VHDDLPAMDD-DDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALS-DASAEIRLRMVTTLAQAAGPAGMVGGQA 159 (304)
T ss_dssp HHHTSTTTTC-CSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSC-CCCHHHHHHHHHHHHHHHSTTTHHHHHH
T ss_pred HHCCcccccC-CCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhccc-CCChHHHHHHHHHHHHHHchhhHhHhHH
Confidence 9999999999 7899999999999999999999999999999999987421 1245566788888888887778999999
Q ss_pred HHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 199 NELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGG-SEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 199 lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~-~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
+|+.+... ..++++|.+|+++|||+||++||++|++++|+ +++..+.+++||.++|++|||+||++|+++
T Consensus 160 lDl~~~~~---------~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~ 230 (304)
T 3lsn_A 160 IDLGSVGL---------KLDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVES 230 (304)
T ss_dssp HHHHTTTC---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCC---------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99998762 36899999999999999999999999999999 888999999999999999999999999999
Q ss_pred hHHHh-hhHHHHHHH
Q 020845 278 EIEEL-KKLAFKLRE 291 (320)
Q Consensus 278 ~~~~~-k~~~~Dl~e 291 (320)
+++++ |++++|++|
T Consensus 231 ~~~~~GK~~g~Dl~e 245 (304)
T 3lsn_A 231 DTATLGKRQGADIAR 245 (304)
T ss_dssp HHHHC----------
T ss_pred ChHHhCCCcccHHhc
Confidence 99888 999999977
No 3
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.3e-58 Score=438.97 Aligned_cols=238 Identities=24% Similarity=0.335 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCC-cccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKE-PVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFI 119 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~-~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLI 119 (320)
+|++|+++..+.||+.|.+.++... |..+.++++|.+..||||+||+||+++++++|++.+.+.++|++|||||+||||
T Consensus 4 ~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aSLI 83 (317)
T 4f62_A 4 NLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYSLI 83 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999987532 567999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHH
Q 020845 120 HENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199 (320)
Q Consensus 120 HDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~l 199 (320)
|||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++... .++....+++..+++++|..+|+.||.+
T Consensus 84 HDDip~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~---~~~~~~~~~i~~la~a~g~~~m~~GQ~l 159 (317)
T 4f62_A 84 HDDLPAMDN-DELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTS---AQPELAIKLIQELVVASGRNGMITGQMI 159 (317)
T ss_dssp HHHSTTSCC--------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTC---CCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HCCcccccC-CCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHhhhhHHHhHHH
Confidence 999999999 788999999999999999999999999999999998732 2455677888889998877789999999
Q ss_pred HhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 020845 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGG-GSEKEIELLRRYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 200 Dl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 278 (320)
|+.+... ..++++|.+|+++|||+||++||++|++++| ++++..+.+++||.++|+||||+||++|++++
T Consensus 160 Dl~~~~~---------~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd 230 (317)
T 4f62_A 160 DLSSENK---------NISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSD 230 (317)
T ss_dssp HHHTSSS---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHhccCC---------CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9998752 3689999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHh-hhHHHHHHH
Q 020845 279 IEEL-KKLAFKLRE 291 (320)
Q Consensus 279 ~~~~-k~~~~Dl~e 291 (320)
++++ |++|+|++|
T Consensus 231 ~~~~GK~~g~Dl~e 244 (317)
T 4f62_A 231 TETLGKTQFSDAEA 244 (317)
T ss_dssp --------------
T ss_pred hHhhCCCcchHHhc
Confidence 9888 999999976
No 4
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=3.3e-59 Score=441.71 Aligned_cols=237 Identities=22% Similarity=0.285 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC-CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHH--hhHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVK-EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQA--IVAAAALHVMHAAS 117 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~-~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~--~~lAaavEliH~as 117 (320)
.|.+|++...+.||+.|.+.++.. .+..+.++++|.+..||||+||+||+++++++|++.+.+ .++|++|||||+||
T Consensus 7 ~~~~~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~~A~aiEliH~aS 86 (309)
T 3pde_A 7 RLIAFEDQWVPALNAPLKQAILADSQDAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTFVPERHWRPVMALELLHTYS 86 (309)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHTCSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHhHhHHHHHHHHHHHHH
Confidence 588999999999999999988754 356799999999999999999999999999999998888 99999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHH
Q 020845 118 FIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 197 (320)
Q Consensus 118 LIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ 197 (320)
|||||||.||+ +++|||+||+|++||+++|||+||+|++.||+++++... ++....+++..++++.|..+++.||
T Consensus 87 LIHDDiP~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~----~~~~~~~~~~~l~~a~g~~~m~~GQ 161 (309)
T 3pde_A 87 LIHDDLPAMDN-DALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDL----PATMQAALVQALATAAGPSGMVAGQ 161 (309)
T ss_dssp HHHHHSTTTTC-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHHHHHSTTTHHHHH
T ss_pred HHHCCchhccC-CCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHhhHhHHHHhH
Confidence 99999888999 788999999999999999999999999999999998642 3456677888888888778899999
Q ss_pred HHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 198 YNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 198 ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
.+|+.+... ..++++|..|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++
T Consensus 162 ~lDl~~~~~---------~~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~g 232 (309)
T 3pde_A 162 AKDIQSEHV---------NLPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVS 232 (309)
T ss_dssp HHHHHTTTC---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCC---------CCCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999998752 36899999999999999999999999999999998899999999999999999999999999
Q ss_pred hHHHh-hhHHHHHHH
Q 020845 278 EIEEL-KKLAFKLRE 291 (320)
Q Consensus 278 ~~~~~-k~~~~Dl~e 291 (320)
+++++ |++++|++|
T Consensus 233 d~~~~GK~~g~Dl~e 247 (309)
T 3pde_A 233 SPAEMGKATQKDADE 247 (309)
T ss_dssp C-----------CTT
T ss_pred CHHHhCCCccchhhc
Confidence 99888 999999987
No 5
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.7e-58 Score=436.54 Aligned_cols=244 Identities=22% Similarity=0.245 Sum_probs=208.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHH
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVM 113 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEli 113 (320)
.|+.+-|++|++.+++.||+.|.+.++.. .|..+.++++|.+..||||+||+||+++++++|++.+.+.++|++||||
T Consensus 3 ~~~~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEli 82 (313)
T 3lom_A 3 LNSTQMNKQVIDKYTQRHELYLEQLLNEIIIPAPQIRSALHYALFSGGKRIRPILVYLAGDLIDVDQGVLDIIAAALELT 82 (313)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34444589999999999999999999764 3567999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHHHhchhh
Q 020845 114 HAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNS-GRILRVMVEMTRAMGSQG 192 (320)
Q Consensus 114 H~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~-~~~~~~i~~~~~a~g~~~ 192 (320)
|+|||||||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++... +.++ ....+++..+++++|..+
T Consensus 83 H~aSLIHDDip~mD~-~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~--~~~~~~~~~~~i~~la~a~g~~~ 159 (313)
T 3lom_A 83 HCYSLIHDDLPAMDN-DDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLS--PLLPAAQVVAITQVLVNASGISG 159 (313)
T ss_dssp HHHHHHHHHSTTTTC-CSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHT--TTSCHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHhCCcccccC-CCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHHHHhHhH
Confidence 999999999999999 788999999999999999999999999999999998631 1123 456788888898887778
Q ss_pred hhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 193 VVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGG--GSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 193 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag--~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
|+.||.+|+.+... ...++++|.+|+++|||+||++||++ |+++| ++++..+.+++||.++|+||||+|
T Consensus 160 m~~GQ~lDl~~~~~--------~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~D 230 (313)
T 3lom_A 160 MVSGQSLDLSELAK--------SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQD 230 (313)
T ss_dssp HHHHHHHHHHTTTS--------SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHccCC--------CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998763 13789999999999999999999999 99999 899999999999999999999999
Q ss_pred hhcCCchhHHHh-hhHHHHHHH
Q 020845 271 RRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 271 D~lD~~~~~~~~-k~~~~Dl~e 291 (320)
|++|++++++++ |++++|++|
T Consensus 231 DilD~~gd~~~~GK~~g~Dl~~ 252 (313)
T 3lom_A 231 DYLDLYAPTQILGKGRSSDQAN 252 (313)
T ss_dssp HHHHHHCC--------------
T ss_pred HHHhccCCHHhhCCCCcchhhc
Confidence 999999999888 999999987
No 6
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=3.4e-58 Score=439.57 Aligned_cols=241 Identities=24% Similarity=0.374 Sum_probs=205.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccC-------CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVK-------EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALH 111 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~-------~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavE 111 (320)
+..|+++++...+.|++.|++.++.. .+..+.++++|++..||||+||+||+++++++|++.+.+..+|++||
T Consensus 36 ~~~~~~~l~~~~~~ve~~L~~~l~~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiE 115 (335)
T 2h8o_A 36 MTNFETRLRENAAKTEALLGHLLSGEARADEITRPQNLLEAMRHGVLNGGKRLRPFLVIESVALLGGDAEAGLHVGAALE 115 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCTTCCCCCHHHHHHHHHHHHTSCSCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45678899999999999999988652 35579999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchh
Q 020845 112 VMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQ 191 (320)
Q Consensus 112 liH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~ 191 (320)
+||+|||||||||.||+ +++|||+||+|++||+++|||+||+|++.||+++++... ..++....+++..+++++|..
T Consensus 116 liH~asLIHDDiPamD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~--~~~~~~~~~~~~~ls~a~g~~ 192 (335)
T 2h8o_A 116 CLHCYSLVHDDLPAMDD-DDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDN--PLAAERKAALVISLARAAGIG 192 (335)
T ss_dssp HHHHHHHHHHTSTTTTC-CSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTS--CSCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCCchhccC-CCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHHhhhh
Confidence 99999999999888999 788999999999999999999999999999999998621 123456678888888888888
Q ss_pred hhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 020845 192 GVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSR 271 (320)
Q Consensus 192 ~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD 271 (320)
+++.||.+|+.+... ..++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||
T Consensus 193 ~~~~GQ~lDl~~~~~---------~~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 193 GMAGGQALDLAAEKK---------APDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADD 263 (335)
T ss_dssp SHHHHHHHHHHHHHS---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC---------CCCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998762 26899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhHHHh-hhHHHHHHH
Q 020845 272 RLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 272 ~lD~~~~~~~~-k~~~~Dl~e 291 (320)
++|++++++++ |++++|++|
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~e 284 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAAR 284 (335)
T ss_dssp HHHHC----------------
T ss_pred HHHhcCCHHHhCCCcchHHhc
Confidence 99999999888 999999987
No 7
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=4.6e-58 Score=432.27 Aligned_cols=236 Identities=20% Similarity=0.268 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIH 120 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIH 120 (320)
+|.+|+++..+.||+.|++.++...|..+.++++|. ..||||+||+||+++++++|++.+.+..+|++|||||+|||||
T Consensus 2 ~~~~~~~~~~~~ve~~l~~~~~~~~~~~l~~~~~y~-~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIH 80 (297)
T 3m0g_A 2 SLSERLKEVQDAVETAMAAAIGRLPAGDLRDAMAYA-AQGGKRLRAFLAIESAAIHGISMAQAMPAALAVEALHAYSLVH 80 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHH-HSCSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999998865566799999999 8999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHH
Q 020845 121 ENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE 200 (320)
Q Consensus 121 DDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lD 200 (320)
||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++.... ++....+++..+++++|..+|+.||.+|
T Consensus 81 DDip~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~---~~~~~~~~~~~l~~~~g~~~~~~GQ~lD 156 (297)
T 3m0g_A 81 DDMPCMDN-DDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLG---SAENRVALVAALAQASGAEGMVYGQALD 156 (297)
T ss_dssp HTSTTTTC-CSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGC---CHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred cCccccCC-CCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccC---ChHHHHHHHHHHHHHHhHhHHHHhHHHH
Confidence 99999999 7889999999999999999999999999999999986421 2445677888888888888899999999
Q ss_pred hhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 020845 201 LQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280 (320)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 280 (320)
+.+.... ...++++|.+|+++|||+||++||++|++++|++++ .+++||.++|++|||+||++|++++++
T Consensus 157 l~~~~~~-------~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~ 226 (297)
T 3m0g_A 157 IAAETAA-------VPLTLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEE 226 (297)
T ss_dssp HHHTTSS-------SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC-------
T ss_pred HHhhhcC-------CCCCHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 9987321 137899999999999999999999999999999876 899999999999999999999999998
Q ss_pred Hh-hhHHHHHHH
Q 020845 281 EL-KKLAFKLRE 291 (320)
Q Consensus 281 ~~-k~~~~Dl~e 291 (320)
++ |++++|++|
T Consensus 227 ~~GK~~g~Dl~~ 238 (297)
T 3m0g_A 227 AAGKRLGKDAEA 238 (297)
T ss_dssp ------------
T ss_pred HhCCCccchhhc
Confidence 88 999999987
No 8
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.3e-57 Score=431.46 Aligned_cols=236 Identities=18% Similarity=0.297 Sum_probs=204.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhcc--CCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh------HHHhhHHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVV--KEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR------EQAIVAAAAL 110 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~--~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~------~~~~~lAaav 110 (320)
.++|+.|+++++. ||+.|++.++. ..+..+.++++|.+..||||+||+||+++++++|++. +.+.++|++|
T Consensus 5 ~~~~~~~~~~~~~-ve~~l~~~~~~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~~~~~~~A~ai 83 (311)
T 3llw_A 5 SPNLSFYYNECER-FESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSI 83 (311)
T ss_dssp CHHHHHHHHHHHH-HHHHHHTCCCCCCSSCSSHHHHHHHHHHSCCCCHHHHHHHHHHHHHSCHHHHHHSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHH-HHHHHHHHhhhccCCcHHHHHHHHHHhhCCCCchHHHHHHHHHHHhCCCcccccchHHHHHHHHHH
Confidence 3458999999999 99999999864 2355799999999999999999999999999999988 8899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhch
Q 020845 111 HVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 190 (320)
Q Consensus 111 EliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~ 190 (320)
||||+|||||||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++.. .++....+++..++++.|.
T Consensus 84 EliH~aSLIHDDIp~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~----~~~~~~~~~i~~la~a~g~ 158 (311)
T 3llw_A 84 ECLHTYSLIHDDLPCMDN-AALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNAL----LESHIIVELIKILSANGGI 158 (311)
T ss_dssp HHHHHHHHHHHTSTTTTC-CSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSC----SCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCccccCC-CcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHH
Confidence 999999999999999999 78899999999999999999999999999999999832 2345667888888888777
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHH
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEI-ELLRRYGFYVGMIQGIV 269 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~-~~l~~~G~~lG~afQi~ 269 (320)
.+|+.||.+|+.+... ..++++|..|+++|||+||++||++|++++|++++.+ +.+++||.++|++|||+
T Consensus 159 ~~m~~GQ~lDl~~~~~---------~~t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~ 229 (311)
T 3llw_A 159 KGMILGQALDCYFENT---------PLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVL 229 (311)
T ss_dssp TTHHHHHHHHHHTTTS---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhcCC---------CCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999998742 3689999999999999999999999999999998888 99999999999999999
Q ss_pred hhhcCCchhHHHh-hhHHHHHHH
Q 020845 270 SRRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 270 DD~lD~~~~~~~~-k~~~~Dl~e 291 (320)
||++|+++|++++ |+.++ +|
T Consensus 230 DDiLD~~gd~~~~GK~~g~--~~ 250 (311)
T 3llw_A 230 DDIIDVTQDEEESGKTTHL--DS 250 (311)
T ss_dssp HHHHHHHC---------------
T ss_pred HHHHhccCChHHHCccccc--cc
Confidence 9999999999888 66665 55
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=1.4e-57 Score=429.74 Aligned_cols=233 Identities=24% Similarity=0.310 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChH-HHhhHHHHHHHHHHHHHHHhC
Q 020845 45 YWTSVHEDIGAHLRQAVVV-KEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHRE-QAIVAAAALHVMHAASFIHEN 122 (320)
Q Consensus 45 ~~~~~~~~ie~~L~~~i~~-~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~-~~~~lAaavEliH~asLIHDD 122 (320)
|-+...+.||+.|.+.++. ..+..+.++++|.+..||||+||.||+++++++|++.+ .+.++|++|||||+|||||||
T Consensus 13 ~~~~~~~~ve~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~~A~avEliH~asLIHDD 92 (302)
T 3p8l_A 13 FSQQHLPLVEKVMVDFIAEYTENERLKEAMLYSIHAGGKRLRPLLVLTTVAAFQKEMETQDYQVAASLEMIHTYSLIHDD 92 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHCC
Confidence 3455566666666666653 23567999999999999999999999999999999887 899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhh
Q 020845 123 LPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ 202 (320)
Q Consensus 123 lPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~ 202 (320)
||.||+ +++|||+||+|++||+++|||+||+|++.||+++++... ++....+++..+++++|..+|+.||.+|+.
T Consensus 93 IP~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~----~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~ 167 (302)
T 3p8l_A 93 LPAMDD-DDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQL----GLSEKVLLMQQLAKAAGNQGMVSGQMGDIE 167 (302)
T ss_dssp STTTTC-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSC----CHHHHHHHHHHHHHHHSTTTHHHHHHHHHH
T ss_pred chhccC-CCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888999 789999999999999999999999999999999998642 345667788888888877789999999999
Q ss_pred cccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 020845 203 CSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~ 282 (320)
+... ..++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++++
T Consensus 168 ~~~~---------~~t~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~ 238 (302)
T 3p8l_A 168 GEKV---------SLTLEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADL 238 (302)
T ss_dssp TTTS---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ccCC---------CCCHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 8752 3689999999999999999999999999999999999999999999999999999999999999888
Q ss_pred -hhHHHHHHH
Q 020845 283 -KKLAFKLRE 291 (320)
Q Consensus 283 -k~~~~Dl~e 291 (320)
|++++|++|
T Consensus 239 GK~~g~Dl~e 248 (302)
T 3p8l_A 239 GKKVGRDEAL 248 (302)
T ss_dssp ----------
T ss_pred CCChhhHHhc
Confidence 999999987
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=4.1e-57 Score=426.58 Aligned_cols=239 Identities=20% Similarity=0.275 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHH
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFI 119 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLI 119 (320)
|+++++...+.|++.|++.++.. .+..+.++++|.+..||||+||.||+++++++|++.+.+.++|++||+||+||||
T Consensus 3 ~~~~l~~~~~~v~~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLi 82 (299)
T 1rqj_A 3 FPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLI 82 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHH
Confidence 67888888889999999988754 2456999999999999999999999999999999988899999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHH
Q 020845 120 HENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199 (320)
Q Consensus 120 HDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~l 199 (320)
|||||.||+ +++|||+||+|++||+++|||+||+|++.||+++++.... ..++....+++..+++++|..+++.||.+
T Consensus 83 HDDiP~~D~-s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~ 160 (299)
T 1rqj_A 83 HDDLPAMDD-DDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMP-EVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHTSTTTTC-CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCT-TCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred hCCChhhcC-CCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHHHhhhhHHHHhHHH
Confidence 999888999 7889999999999999999999999999999999985211 12455677888888888777889999999
Q ss_pred HhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 020845 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAIL-GGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 200 Dl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gail-ag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 278 (320)
|+.+..+ ..++++|.+|+++|||+||++||++|+++ +|++++..+.+++||.++|++|||+||++|++++
T Consensus 161 dl~~~~~---------~~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~ 231 (299)
T 1rqj_A 161 DLDAEGK---------HVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGD 231 (299)
T ss_dssp HHHTTTT---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCC---------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9998752 26899999999999999999999999999 9988888999999999999999999999999999
Q ss_pred HHHh-hhHHHHHHH
Q 020845 279 IEEL-KKLAFKLRE 291 (320)
Q Consensus 279 ~~~~-k~~~~Dl~e 291 (320)
++++ |++|+|++|
T Consensus 232 ~~~~GK~~g~Dl~~ 245 (299)
T 1rqj_A 232 TATLGKRQGADQQL 245 (299)
T ss_dssp HHHHSSCTTHHHHH
T ss_pred HHHhCCChhhHHHc
Confidence 9988 999999987
No 11
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=4.5e-56 Score=414.43 Aligned_cols=255 Identities=51% Similarity=0.863 Sum_probs=226.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASF 118 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asL 118 (320)
|+.+++||+++++.|++.|++.++...|..+.++++|++..||||+||+||+++++++|++.+.+.++|++|||||+|||
T Consensus 3 ~~~~~~~~~~~~~~i~~~L~~~~~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSL 82 (273)
T 3qkc_B 3 LTRTQTYRATIESDIESYLKKAIPIRAPESVFEPMHHLTFAAPRTSASALCVAACELVGGDRSDAMAAAAAVHLMHVAAY 82 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCCCCSSTTHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGTHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 55889999999999999999999877777799999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHH
Q 020845 119 IHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY 198 (320)
Q Consensus 119 IHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~ 198 (320)
|||| |+|+ +. |||+||+|++||+++|||+||+|++.||+++++...+...++.++++++.++++++|..+++.||.
T Consensus 83 IHDD--I~D~-d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~ 158 (273)
T 3qkc_B 83 THEN--LPLT-DG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQY 158 (273)
T ss_dssp HHHS--CCBT-TB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHcC--cccC-cc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 9999 7888 44 999999999999999999999999999999998764322345678899999999988889999999
Q ss_pred HHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 020845 199 NELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 199 lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 278 (320)
+|+.+.. ..++++|..|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||+.+...+
T Consensus 159 lDl~~~~----------~~~~eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~~~~~ 228 (273)
T 3qkc_B 159 HELGLNQ----------LNDLELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRSGFEG 228 (273)
T ss_dssp HHTTCCS----------SCCHHHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTHH
T ss_pred HHHhcCC----------CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Confidence 9999843 256788877889999999999999999999999999999999999999999999999974421
Q ss_pred -HHHhhhHHHHHHHhccCCHHHHHHHHHHHhc
Q 020845 279 -IEELKKLAFKLREVNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 279 -~~~~k~~~~Dl~el~~~~~~~~~~l~~~~~~ 309 (320)
.++.+..+ +++|+.+++++.++|.++++.
T Consensus 229 ~~~~~~~~a--~~~l~~~~~~~~~~l~~~~~~ 258 (273)
T 3qkc_B 229 RIKELKELA--VKELESFGGEKIELIRGVFEL 258 (273)
T ss_dssp HHHHHHHHH--HHHHTTCCSSHHHHHHHHTTC
T ss_pred HHHHHHHHH--HHHHHccCchhhhHHHHHHHH
Confidence 22224444 788999999999999999964
No 12
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-57 Score=429.32 Aligned_cols=237 Identities=23% Similarity=0.306 Sum_probs=182.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 44 SYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 44 ~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
+-+....+.||+.|++.++.. .+..+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||+||||||
T Consensus 11 ~~~~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asLIHD 90 (302)
T 3p8r_A 11 EALSSYQQRNNQQLDQWLNRIPFQTLPLIEAMRYGLLLGGKRARPYLVYITGQMLGCELSDLDTPASAVECIHAYSLIHD 90 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHTCSCTTSSHHHHHHHHHHSCCSCHHHHHHHHHHHTTTCCGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 345566666777777766543 255799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHh
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl 201 (320)
|||+||+ +++|||+||+|++||+++|||+||+|++.||+++++...+ ..++....+++..++++.|..+++.||.+|+
T Consensus 91 DIp~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl 168 (302)
T 3p8r_A 91 DLPAMDD-DELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLS-AAGETQRVAMLQALAEASGAQGMCLGQALDL 168 (302)
T ss_dssp TCHHHHC-CC--------------HHHHHHHHHHHHHHHHHHHHSCCC-HHHHTTHHHHHHHHHHHHSTTTHHHHHHHHH
T ss_pred CcccccC-CCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHHHHHhHhHHHHhHHHHH
Confidence 9887999 7889999999999999999999999999999999987421 0112235677778888877778999999999
Q ss_pred hcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 020845 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGG-GSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag-~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 280 (320)
.+... ..++++|.+|+++|||+||++||++|++++| ++++..+.+++||.++|++|||+||++|++++++
T Consensus 169 ~~~~~---------~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~ 239 (302)
T 3p8r_A 169 AAENR---------LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTE 239 (302)
T ss_dssp HTTTS---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HccCC---------CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 98752 3689999999999999999999999999999 7888889999999999999999999999999998
Q ss_pred Hh-hhHHHHHHH
Q 020845 281 EL-KKLAFKLRE 291 (320)
Q Consensus 281 ~~-k~~~~Dl~e 291 (320)
++ |++++|++|
T Consensus 240 ~~GK~~g~Dl~e 251 (302)
T 3p8r_A 240 TLGKPQGSDQEL 251 (302)
T ss_dssp ------------
T ss_pred HhCCCcchHHhc
Confidence 88 999999987
No 13
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=3.3e-57 Score=430.59 Aligned_cols=235 Identities=21% Similarity=0.311 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 44 SYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 44 ~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
..++...+.|++.|++.++.. .+..+.++++|.+..||||+||+||+++++++|++.+.+.++|++||+||+||||||
T Consensus 35 ~~l~~~~~~ve~~l~~~l~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHD 114 (324)
T 3uca_A 35 MNINSLKEEVDQSLKAYFNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDYKKILTPAMAIEMIHTYSLIHD 114 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHHHHHTTCSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 344556667777787777653 255799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHH-HHHHHHHHHHhchhhhhHHHHHH
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRI-LRVMVEMTRAMGSQGVVEGQYNE 200 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~-~~~i~~~~~a~g~~~~~~GQ~lD 200 (320)
|||.||+ +++|||+||+|++||+++|||+||+|++.||+++++... ++... .+++..++++.|..+++.||.+|
T Consensus 115 DIP~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~----~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 189 (324)
T 3uca_A 115 DLPCMDN-DDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSL----EEGKSALKATKIIADAAGSDGMIGGQIVD 189 (324)
T ss_dssp TSTTTTC-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred CchhccC-CCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCC----ChhhHHHHHHHHHHHHHhHhHHHHhHHHH
Confidence 9888999 788999999999999999999999999999999998531 11223 67777888887777899999999
Q ss_pred hhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 020845 201 LQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280 (320)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 280 (320)
+.+... ...++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++
T Consensus 190 l~~~~~--------~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~ 261 (324)
T 3uca_A 190 IINEDK--------EEISLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAK 261 (324)
T ss_dssp HHTSSC--------SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHcCCC--------CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 998763 136899999999999999999999999999999999999999999999999999999999999998
Q ss_pred Hh-hhHHHHHHH
Q 020845 281 EL-KKLAFKLRE 291 (320)
Q Consensus 281 ~~-k~~~~Dl~e 291 (320)
++ |++++|++|
T Consensus 262 ~~GK~~g~Dl~e 273 (324)
T 3uca_A 262 DLGKNVHKDQES 273 (324)
T ss_dssp ------------
T ss_pred HhCCCcchHhhc
Confidence 88 999999987
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=2.6e-56 Score=421.36 Aligned_cols=230 Identities=24% Similarity=0.301 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHhhccC-CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCC
Q 020845 49 VHEDIGAHLRQAVVVK-EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSD 127 (320)
Q Consensus 49 ~~~~ie~~L~~~i~~~-~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D 127 (320)
..+.|++.|.+.++.. .+..+.++++|.+..||||+||+||+++++++|++.+.+.++|++||+||+|||||||||.||
T Consensus 9 ~~~~v~~~l~~~l~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D 88 (301)
T 1rtr_A 9 LIDEVNNELSVAINKSVMDTQLEESMLYSLNAGGKRIRPVLLLLTLDSLNTEYELGMKSAIALEMIHTYSLIHDDLPAMD 88 (301)
T ss_dssp HHHHHHHHHHTSSCCCSSCCSHHHHHHHHHTSCCCCHHHHHHHHHHHHTTSCGGGGHHHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHhhccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCCchhcc
Confidence 5567788888777541 345699999999999999999999999999999988888999999999999999999988899
Q ss_pred CCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCC
Q 020845 128 RTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD 207 (320)
Q Consensus 128 ~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~ 207 (320)
+ +++|||+||+|++||+++|||+||+|++.||+++++... .++....+++..+++++|..+++.||.+|+.+..+
T Consensus 89 ~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~---~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~- 163 (301)
T 1rtr_A 89 N-DDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR---LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ- 163 (301)
T ss_dssp C-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-
T ss_pred C-CCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC-
Confidence 9 789999999999999999999999999999999998721 23456677888888888888899999999998752
Q ss_pred CcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHH
Q 020845 208 DDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLA 286 (320)
Q Consensus 208 ~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~ 286 (320)
..++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++++ |+++
T Consensus 164 --------~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g 235 (301)
T 1rtr_A 164 --------PIDLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVG 235 (301)
T ss_dssp --------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred --------CCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcc
Confidence 3689999999999999999999999999999999999999999999999999999999999999888 9999
Q ss_pred HHHHH
Q 020845 287 FKLRE 291 (320)
Q Consensus 287 ~Dl~e 291 (320)
+|++|
T Consensus 236 ~Dl~~ 240 (301)
T 1rtr_A 236 SDLEN 240 (301)
T ss_dssp -----
T ss_pred hHHHc
Confidence 99976
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=5.8e-56 Score=417.59 Aligned_cols=265 Identities=30% Similarity=0.502 Sum_probs=221.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIH 120 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIH 120 (320)
+|..|++...+.|++.|++.++...|..+.++++|.+..||||+||.||+++++++|++.+.+.++|++||+||+|||||
T Consensus 12 ~~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLiH 91 (293)
T 2j1p_A 12 DPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPAACAVEMIHTMSLIH 91 (293)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67899998888999999999876555679999999999999999999999999999998888999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHH
Q 020845 121 ENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE 200 (320)
Q Consensus 121 DDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lD 200 (320)
||||+||+ +++|||+||+|++||+++|||+||+|++.||+++++.... ..++..+.+++.++++++|..+++.||.+|
T Consensus 92 DDip~mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~D 169 (293)
T 2j1p_A 92 DDLPCMDN-DDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS-EVSPARVVRAVGELAKAIGTEGLVAGQVVD 169 (293)
T ss_dssp HTSTTTTC-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCT-TSCHHHHHHHHHHHHHHHSTTTHHHHHHHT
T ss_pred CCchhccC-CCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 99999999 7899999999999999999999999999999999987421 123567888888998887777899999999
Q ss_pred hhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 020845 201 LQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280 (320)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 280 (320)
+.+..... ...++++|..|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++
T Consensus 170 l~~~~~~~------~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~K 243 (293)
T 2j1p_A 170 ISSEGLDL------NNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSK 243 (293)
T ss_dssp TC---CCH------HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHccCCC------CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 98865200 125788999999999999999999999999999999999999999999999999999999998752
Q ss_pred ----------HhhhHHHHHH-----HhccCCHHHHHHHHHHHhccccc
Q 020845 281 ----------ELKKLAFKLR-----EVNSFNDENAEVIFSLVDDNITH 313 (320)
Q Consensus 281 ----------~~k~~~~Dl~-----el~~~~~~~~~~l~~~~~~~~~~ 313 (320)
..+..+..+. .|+.+..+.++.|.++.+.-++|
T Consensus 244 ~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~~~~~~L~~l~~~~~~R 291 (293)
T 2j1p_A 244 LTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANR 291 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTTSCTTTTHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhh
Confidence 2233333332 26666555677788887765554
No 16
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.8e-55 Score=422.34 Aligned_cols=250 Identities=19% Similarity=0.265 Sum_probs=200.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHH
Q 020845 38 TPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAAS 117 (320)
Q Consensus 38 ~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~as 117 (320)
+...+..+++...+.|++.|++.++...| .+.++++|++..||||+||+||+++++++|++.+.+.++|++|||||+||
T Consensus 23 ~~~~l~~~l~~~l~~v~~~l~~~l~~~~~-~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~aiEliH~as 101 (345)
T 3oyr_A 23 SVDRLVRLAEADMAGVNRLITDRMQSDVA-IIPALAEHLIAAGGKRLRPLMTVAAARLAGADNDHFQKLAAAVEFIHTAT 101 (345)
T ss_dssp CSHHHHHHTHHHHHHHHHHHHHHTCCSST-HHHHHHHHHHTTTCCCHHHHHHHHHHHHTTCCSSTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 44577888888889999999999987655 58999999999999999999999999999999899999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHH
Q 020845 118 FIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 197 (320)
Q Consensus 118 LIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ 197 (320)
||||| |||+ |++|||+||+|++||+++|||+||+|++.||+++++... ..+++++.+.. .+++.||
T Consensus 102 LiHDD--i~D~-s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ 167 (345)
T 3oyr_A 102 LLHDD--VVDG-SQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNS------MKALEILARAS-----RVIAEGE 167 (345)
T ss_dssp HHTTT--TC----------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTC------HHHHHHHHHHH-----HHHHHHH
T ss_pred HHHCc--ccCC-CCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHHHHH-----HHHHHHH
Confidence 99999 8999 788999999999999999999999999999999998742 35555555433 4689999
Q ss_pred HHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 198 YNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 198 ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
.+|+.+..+ ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++
T Consensus 168 ~~dl~~~~~--------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 168 VLQLMRSHD--------LNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHTSSC--------SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHcCCC--------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999998753 237899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhcc
Q 020845 278 EIEEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 278 ~~~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~~ 310 (320)
+++++ |++|+||+| ++..++++++.|.+++...
T Consensus 240 d~~~~GK~~g~Dl~egK~TlP~i~al~~~~~~~~~~l~~~l~~~ 283 (345)
T 3oyr_A 240 ATETLGKNAGDDFREGKATLPLLLAIARSGPREAEFWERAIGRR 283 (345)
T ss_dssp -----------------CCHHHHHHHHHSCSHHHHHHHHHCC--
T ss_pred ChhhcCCCccchhhcCchHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 99888 999999998 7778888888888887643
No 17
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=3.9e-55 Score=408.21 Aligned_cols=254 Identities=45% Similarity=0.820 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhC
Q 020845 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHEN 122 (320)
Q Consensus 43 ~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDD 122 (320)
++||+++++.|++.|++.++...|..+.++++|++..||||+||.||+++++++|++.+.+.++|++||+||+|||||||
T Consensus 2 ~~~~~~~~~~ie~~L~~~l~~~~p~~l~~~~~y~~~~gGKrlRP~L~l~~~~~~g~~~~~~~~~A~aiEliH~aSLIHDD 81 (274)
T 3kra_B 2 QPYWAAIEADIERYLKKSITIRPPETVFGPMHHLTFAAPATAASTLCLAACELVGGDRSQAMAAAAAIHLVHAAAYVHEH 81 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 58999999999999999998777767999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHHHHhchhhhhHHHHHHh
Q 020845 123 LPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPA-GNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201 (320)
Q Consensus 123 lPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~-~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl 201 (320)
||++|+ ++|||+||+|++||+++|||+||+|++.||+++++...+. ..++.++++++.++++++|..+++.||.+|+
T Consensus 82 I~~dD~--d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl 159 (274)
T 3kra_B 82 LPLTDG--SRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREE 159 (274)
T ss_dssp CCCSSS--SSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHT
T ss_pred CcccCC--ccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Confidence 644465 3699999999999999999999999999999999976421 1234577889999999988889999999999
Q ss_pred hcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchh-H-
Q 020845 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEE-I- 279 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~-~- 279 (320)
.+..+ ..++++|..|+++|||+||++||++|++++|++++.++.+++||.++|++|||+||.+--... .
T Consensus 160 ~~~~~---------~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~~~~~~~~~~ 230 (274)
T 3kra_B 160 EIVDG---------NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMKNSHQLIDEN 230 (274)
T ss_dssp TCCTT---------SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHH
T ss_pred hccCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 98762 268999999999999999999999999999999999999999999999999999998331111 1
Q ss_pred --HHhhhHHHHHHHhccCCHHHHHHHHHHHhc
Q 020845 280 --EELKKLAFKLREVNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 280 --~~~k~~~~Dl~el~~~~~~~~~~l~~~~~~ 309 (320)
+++.+-+ +++|+.+.+++.++|.+|+.+
T Consensus 231 ~~~~~~~~A--~~~L~~~~~~~~~pl~~~~~~ 260 (274)
T 3kra_B 231 IIGKLKELA--LEELGGFHGKNAELMSSLVAE 260 (274)
T ss_dssp HHHHHHHHH--HHHHTTSCSSHHHHTGGGGC-
T ss_pred HHHHHHHHH--HHHHHcCCchhhhhHHHHHhC
Confidence 2222223 567999999999999999854
No 18
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=1.6e-55 Score=413.73 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC-hHHHhhHHHHHHHHHHHHHHHhCCCC
Q 020845 49 VHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGH-REQAIVAAAALHVMHAASFIHENLPL 125 (320)
Q Consensus 49 ~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~-~~~~~~lAaavEliH~asLIHDDlPi 125 (320)
+.+.|++.|++.++.. .+..+.++++|.+..||||+||.||+++++++|++ .+.+.++|++|||||+|||||||||.
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~~~~~~~~~~~~A~aiEliH~aSLIHDDIp~ 84 (291)
T 3npk_A 5 LKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQLLLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPA 84 (291)
T ss_dssp HHHHHHHHHHTCCCCCCSSCSSHHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHCCccc
Confidence 4567888888877532 34569999999999999999999999999999887 57899999999999999999999888
Q ss_pred CCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhccc
Q 020845 126 SDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQ 205 (320)
Q Consensus 126 ~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~ 205 (320)
||+ +++|||+||+|++||+++|||+||+|++.||+++++... +.....+++..++++.|..+++.||.+|+.+..
T Consensus 85 mD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~----~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~ 159 (291)
T 3npk_A 85 MDN-ADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHL----KDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFED 159 (291)
T ss_dssp TTC-CSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSS----CHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT
T ss_pred ccC-CCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Confidence 999 789999999999999999999999999999999987642 345567788888888677899999999999875
Q ss_pred CCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hh
Q 020845 206 CDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KK 284 (320)
Q Consensus 206 ~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~ 284 (320)
. ..++++|..|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++++ |+
T Consensus 160 ~---------~~~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~ 230 (291)
T 3npk_A 160 K---------RLSLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKP 230 (291)
T ss_dssp S---------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred C---------CCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCc
Confidence 2 3689999999999999999999999999999999989999999999999999999999999999888 88
Q ss_pred HHHH
Q 020845 285 LAFK 288 (320)
Q Consensus 285 ~~~D 288 (320)
.+.|
T Consensus 231 ~~~d 234 (291)
T 3npk_A 231 TNND 234 (291)
T ss_dssp ----
T ss_pred cchh
Confidence 7766
No 19
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=4e-55 Score=419.65 Aligned_cols=249 Identities=20% Similarity=0.331 Sum_probs=209.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHH
Q 020845 40 NKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFI 119 (320)
Q Consensus 40 ~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLI 119 (320)
..+..+++...+.|++.|++.++...+..+.++++|++..||||+||+||+++++++|++.+.+..+|++||+||+||||
T Consensus 12 ~~l~~~l~~~l~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLi 91 (341)
T 3mzv_A 12 DRLAQALAEDMAAVNALIRERMSSEHAPRIPEVTAHLIEAGGKRLRPMLTLAAARLVGYGGPFHVHLAATVEFIHTATLL 91 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888889999999998762346999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHH
Q 020845 120 HENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199 (320)
Q Consensus 120 HDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~l 199 (320)
||| |||+ |.+|||+||+|++||+++|||+||+|++.||+++++... .++++++.+.. .+++.||.+
T Consensus 92 HDD--I~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ~~ 157 (341)
T 3mzv_A 92 HDD--VVDE-SRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGN------MRVMEILANAS-----AVIAEGEVL 157 (341)
T ss_dssp HHH--C-------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCC------HHHHHHHHHHH-----HHHHHHHHH
T ss_pred HcC--ccCC-CCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHHHHH-----HHHHHHHHH
Confidence 999 8999 789999999999999999999999999999999998742 35556655443 468999999
Q ss_pred HhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 020845 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEI 279 (320)
Q Consensus 200 Dl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 279 (320)
|+.+... ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++
T Consensus 158 dl~~~~~--------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~ 229 (341)
T 3mzv_A 158 QLTAAQN--------LATTEDIYLRVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKS 229 (341)
T ss_dssp HHHHTTC--------TTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhccC--------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 9998753 23789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhcc
Q 020845 280 EEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 280 ~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~~ 310 (320)
+++ |++|+||+| ++..++++++.|.+++...
T Consensus 230 ~~~GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~l~~~ 271 (341)
T 3mzv_A 230 AEIGKNTGDDFRERKLTMPVIKAVALADEAERAFWKRVIEKG 271 (341)
T ss_dssp ------CCHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHTTSC
T ss_pred hhcCCCCCcccccCchhHHHHHHHHhCCHhHHHHHHHHHcCC
Confidence 888 999999998 8888889999998888754
No 20
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=2.8e-55 Score=423.19 Aligned_cols=259 Identities=17% Similarity=0.208 Sum_probs=218.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASF 118 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asL 118 (320)
|..++.|++.+.+.|++.|++.++...+..+.++++|++..||||+||+||+++++++|++.+.+..+|++|||||+|||
T Consensus 3 m~~~~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~aiEliH~asL 82 (358)
T 4dhd_A 3 MDVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQVKTGGKRLRPLLTLAAAEAVSGQWRPALPAAAIVELIHNYSL 82 (358)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHGGGSSCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998866355799999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHH
Q 020845 119 IHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQY 198 (320)
Q Consensus 119 IHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~ 198 (320)
|||| |||+ |.+|||+||+|++||+++|||+||+|++.||+++.+.. ...++++++. +++ .+++.||.
T Consensus 83 iHDD--I~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-----~~~~~~~~~~---~~~--~~~~~GQ~ 149 (358)
T 4dhd_A 83 IYDD--IIDR-GDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTP-----KPTLFAKEVA---EVI--KAIDEGER 149 (358)
T ss_dssp HHHH--HHTT-CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSS-----SHHHHHHHHH---HHH--HHHHHHHH
T ss_pred HHCc--cccC-CCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCc-----cHHHHHHHHH---HHH--HHHHHHHH
Confidence 9999 8999 78999999999999999999999999999999996542 2334555554 443 46999999
Q ss_pred HHhhcccCCCcccc---cCC-CCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020845 199 NELQCSQCDDDDRK---LNG-ITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLG 274 (320)
Q Consensus 199 lDl~~~~~~~~~~~---~~~-~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD 274 (320)
+|+.+...++.... .+. ..+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|
T Consensus 150 ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD 229 (358)
T 4dhd_A 150 LDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLD 229 (358)
T ss_dssp HHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998721100000 011 36899999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHh-hhHHHHHHH-----------hccCCHHHHHHHHHHHhcc
Q 020845 275 PTEEIEEL-KKLAFKLRE-----------VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 275 ~~~~~~~~-k~~~~Dl~e-----------l~~~~~~~~~~l~~~~~~~ 310 (320)
++++++++ |++|+||+| ++..++++++.|.+++...
T Consensus 230 ~~gd~~~~GK~~g~Dl~egK~~T~p~i~al~~~~~~~~~~L~~~l~~~ 277 (358)
T 4dhd_A 230 IYGDPKKFGKEIGKDIKEHKRGNAVVAVALSHLGEGERRRLLEILARE 277 (358)
T ss_dssp HHC-------CTTHHHHTTBSCSHHHHHHHHHSCHHHHHHHHHHHHCS
T ss_pred hcCChhhcCCCchhhHhcCChhhHHHHHHHHhCChhhHHHHHHHHcCC
Confidence 99999888 999999988 5667888888898888654
No 21
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.7e-55 Score=420.36 Aligned_cols=250 Identities=22% Similarity=0.360 Sum_probs=218.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhC
Q 020845 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHEN 122 (320)
Q Consensus 43 ~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDD 122 (320)
..+++.....|++.|++.++...+..+.++++|++..||||+||.||+++++++|++.+.+.++|++|||||+|||||||
T Consensus 8 ~~~~~~~~~~v~~~l~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHDD 87 (342)
T 1wy0_A 8 FARIKEKAKLIDEKIFELIPEKDPRVLYEAARHYPLAGGKRVRPFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDD 87 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSCSSHHHHHHHHHTGGGTCCCHHHHHHHHHTTTTTSCGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34455555678889998887652456999999999999999999999999999999888899999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhh
Q 020845 123 LPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQ 202 (320)
Q Consensus 123 lPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~ 202 (320)
|||+ |.+|||+||+|++||+++|||+||+|++.||+++++... +.....+++..+++++ .+++.||.+|+.
T Consensus 88 --i~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~----~~~~~~~~~~~~~~~~--~~~~~GQ~~dl~ 158 (342)
T 1wy0_A 88 --IMDM-DETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEI----PPEKKARVLEVIVKAS--NELCEGQARDLE 158 (342)
T ss_dssp --HHHT-CCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCS----CHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred --cccC-CCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHccc----CcccHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 8999 789999999999999999999999999999999998742 2333445555555554 679999999999
Q ss_pred cccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 020845 203 CSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL 282 (320)
Q Consensus 203 ~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~ 282 (320)
+... ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++++
T Consensus 159 ~~~~--------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~ 230 (342)
T 1wy0_A 159 FEKK--------STVTIEEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKL 230 (342)
T ss_dssp HTTC--------SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cccC--------CCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhh
Confidence 8763 13689999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -hhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 283 -KKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 283 -k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
|++|+||+| ++..++++++.|.+++..
T Consensus 231 GK~~g~Dl~egK~Tlp~i~al~~~~~~~~~~l~~~~~~ 268 (342)
T 1wy0_A 231 GKPVGSDIRKGKKTLIVAHFFENADEKDKQRFLKIFGK 268 (342)
T ss_dssp TSCSCHHHHHTCCCHHHHHHHHHCCHHHHHHHHHTSCC
T ss_pred CCCchhHHhCCCCcHHHHHHHHhCCHhHHHHHHHHHcc
Confidence 999999998 777788888888777654
No 22
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=1.8e-54 Score=416.56 Aligned_cols=248 Identities=23% Similarity=0.329 Sum_probs=218.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhc-----------cCCCCcchHHHHHHHHHHhCCChHHHhhHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFV-----------FAAPVNMAPALCVAACELVGGHREQAIVAAAA 109 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~-----------~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaa 109 (320)
+..+++++.+..|+..|++.+....| .+.+++.|.+ ..||||+||+||+++++++|++.+.+.++|++
T Consensus 4 ~~~~~l~~~~~~v~~~l~~~v~~~~~-~l~~~~~y~~~~~~~~~~~~~~~gGKrlRp~l~ll~~~~~g~~~~~~~~~A~a 82 (352)
T 3nf2_A 4 DVTALLERGRTLATPVLRAAVDRLAP-PMDTVAAYHFGWIDAQGNPADGDGGKAVRPALAVLSAEVTGAAPEVGVPGAVA 82 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSCT-THHHHHHHHTTSBCTTSCBCCCCCCCCHHHHHHHHHHHTTTCCGGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccCh-HHHHHHHHHhcccccccccCcCCCcccHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45689999999999999999987665 5888998887 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhc
Q 020845 110 LHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMG 189 (320)
Q Consensus 110 vEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g 189 (320)
|||||+||||||| |||+ |.+|||+||+|++||+++|||+||+|++.||+++++... +. ..+++..++.++
T Consensus 83 vEliH~asLiHDD--I~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~-----~~-~~~~~~~~~~~~- 152 (352)
T 3nf2_A 83 VELVHNFSLLHDD--LMDG-DEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGT-----VE-AGRATRRLTKAS- 152 (352)
T ss_dssp HHHHHHHHHHHHH--HHHT-CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCS-----HH-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcC--CCCC-CCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCC-----ch-HHHHHHHHHHHH-
Confidence 9999999999999 8999 889999999999999999999999999999999998753 21 233444444444
Q ss_pred hhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 020845 190 SQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIV 269 (320)
Q Consensus 190 ~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~ 269 (320)
.+++.||++|+.+..+ ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+
T Consensus 153 -~~l~~GQ~~dl~~~~~--------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~ 223 (352)
T 3nf2_A 153 -RSLIDGQAQDISYEHR--------DRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAV 223 (352)
T ss_dssp -HHHHHHHHHHHHHTTC--------SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcccC--------CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999998763 1378999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCchhHHHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 270 SRRLGPTEEIEEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 270 DD~lD~~~~~~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
||++|++++++++ |++|+||+| ++..++++ +.|.+++..
T Consensus 224 DD~ld~~gd~~~~GK~~g~Dl~egK~Tlpvi~al~~~~~~~-~~L~~~l~~ 273 (352)
T 3nf2_A 224 DDLLGIWGDPDATGKQTWSDLRQRKKSLPVVAALAAGGAAS-ERLGEILTA 273 (352)
T ss_dssp HHHHHHHCCHHHHSSCTTHHHHTTCCCHHHHHHHHHCSHHH-HHHHHHHHH
T ss_pred HHHHhccCChhhhCCCcCcccccCCccHHHHHHHHhCChHH-HHHHHHHhc
Confidence 9999999999988 999999998 66665543 446666654
No 23
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-54 Score=415.84 Aligned_cols=246 Identities=22% Similarity=0.262 Sum_probs=195.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIH 120 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIH 120 (320)
.+...++.-.+.|++.|++.++... ..+.++++|++..||||+||+||+++++++|++.+.+.++|++||+||+|||||
T Consensus 8 ~~~~~i~~~l~~v~~~l~~~~~~~~-~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~A~aiEliH~asLiH 86 (334)
T 3rmg_A 8 LIKTPIEAELEDFKALFDTPLSDSN-ALLDSVITHIRKRNGKMMRPILVLLVARLYGAVTPATLHAAVSLELLHTASLVH 86 (334)
T ss_dssp HHHGGGHHHHHHHHHHTC----CCC-HHHHHHHHHTCC----CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555667888888887654 469999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHH
Q 020845 121 ENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE 200 (320)
Q Consensus 121 DDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lD 200 (320)
|| |||+ |.+|||+||+|++||+++|||+||+|++.||+++++... ..+++++.+.. .+++.||.+|
T Consensus 87 DD--I~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ~ld 152 (334)
T 3rmg_A 87 DD--VVDE-STERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNN------YEIIRLVSSLG-----QKLAEGELLQ 152 (334)
T ss_dssp HH--HHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHH-----HHHHHHHHHH
T ss_pred cC--ccCC-CCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHHHHH-----HHHHHHHHHH
Confidence 99 8999 889999999999999999999999999999999998642 45666665544 4689999999
Q ss_pred hhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHH
Q 020845 201 LQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIE 280 (320)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~ 280 (320)
+.+... ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++ +++
T Consensus 153 l~~~~~--------~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~ 223 (334)
T 3rmg_A 153 LSNVSN--------HSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSK 223 (334)
T ss_dssp HHCCCC----------CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC-
T ss_pred HHhCCC--------CCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-Chh
Confidence 998763 23689999999999999999999999999999999999999999999999999999999999 565
Q ss_pred Hh-hhHHHHHHH----------hccCCHHHHHHHHHHHhcc
Q 020845 281 EL-KKLAFKLRE----------VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 281 ~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~~ 310 (320)
++ |++|+||+| ++..++++++.|.+++...
T Consensus 224 ~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~~ 264 (334)
T 3rmg_A 224 KIGKPTGNDMLEGKLTLPALYALNTTKDAWAEQIAFKVKEG 264 (334)
T ss_dssp -----CCHHHHTTCCCHHHHHHHHHHCCHHHHHHHHHHHHT
T ss_pred hcCCCchhhhhcCchHHHHHHHHHhCChhhHHHHHHHHcCC
Confidence 56 999999998 7777788888888887653
No 24
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=6.4e-55 Score=407.58 Aligned_cols=243 Identities=14% Similarity=0.182 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCC---ChHHHhhHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGG---HREQAIVAAAALHVMHAAS 117 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~---~~~~~~~lAaavEliH~as 117 (320)
.+...++...+.|++.|++.++...+..+.++++|++..||||+||+||+++++++|+ +.+.+..+|++||+||+||
T Consensus 5 ~l~~~i~~~l~~ve~~L~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~Lvll~~~~~g~~~~~~~~~~~~A~aiEliH~aS 84 (285)
T 4fp4_A 5 SLPPEVLAALERVKARLNKVGEELEPISLRKAVRHYIETPGKLLRPLLLLTFTYSIDRRSIMDPRILEAAAIVELLHVVS 84 (285)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTTCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHH
Confidence 4456777778888889998888653556999999999999999999999999999998 7788999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHH
Q 020845 118 FIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQ 197 (320)
Q Consensus 118 LIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ 197 (320)
||||| |||+ +.+|||+||+|++||+++|||+||+|++.||+++++.. + ++++++. +++ .+++.||
T Consensus 85 LIHDD--ImD~-s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~------~-~~~~~ls---~~~--~~~~~GQ 149 (285)
T 4fp4_A 85 LLQDD--VMDQ-HDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLG------A-DVVTYLA---DVA--QRLSVGQ 149 (285)
T ss_dssp HHHHH--HHTT-CSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTC------H-HHHHHHH---HHH--HHHHHHH
T ss_pred HHHCC--CCCC-CCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhh------H-HHHHHHH---HHH--HHHHHhH
Confidence 99999 8999 78999999999999999999999999999999999863 2 4555554 443 4699999
Q ss_pred HHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCch
Q 020845 198 YNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTE 277 (320)
Q Consensus 198 ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~ 277 (320)
.+|+.+... .|+++|||+||++||++|++++|++ +..+.+++||.++|++|||+||++|+++
T Consensus 150 ~lDl~~~~~-----------------~~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~ 211 (285)
T 4fp4_A 150 ALDLEGERD-----------------KAAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENV 211 (285)
T ss_dssp HHHHTTCHH-----------------HHHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHhcccc-----------------chhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999987641 1999999999999999999999998 8889999999999999999999999999
Q ss_pred hHHHhhhHHHHHHH----hccCCHHHHHHHHHHHhcccccccc
Q 020845 278 EIEELKKLAFKLRE----VNSFNDENAEVIFSLVDDNITHVLG 316 (320)
Q Consensus 278 ~~~~~k~~~~Dl~e----l~~~~~~~~~~l~~~~~~~~~~~~~ 316 (320)
+++..|++++||+| ++.+.+|.+.++.++|++.+++++-
T Consensus 212 d~~~~k~~g~DI~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (285)
T 4fp4_A 212 ERPETKSIANEIGRYLLKIKEHVGDAIAPFERLIKYLIGKALE 254 (285)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHC
T ss_pred CccccCccHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHhc
Confidence 98888999999998 6556789999999999999888764
No 25
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-54 Score=403.81 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCC
Q 020845 50 HEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRT 129 (320)
Q Consensus 50 ~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~D 129 (320)
.++||+.|++.++...|..+.++++|.+..||||+||.||+++++++|++++.+..+|++||+||+|||||||||.||+
T Consensus 15 ~~~v~~~l~~~l~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~- 93 (284)
T 2ftz_A 15 XEXVEERIREILRPGWDLLTEEAMLYSATVGGXRIRPLLVLTLGEDLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN- 93 (284)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHSCCCCHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC-
T ss_pred hHHHHHHHHHHhcccCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC-
Confidence 4556666666664333557999999999999999999999999999999988899999999999999999999888999
Q ss_pred CCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCc
Q 020845 130 SLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDD 209 (320)
Q Consensus 130 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~ 209 (320)
+.+|||+||+|++||+++|||+||+|++.||+++++.. +.++++.+.+ ++ .+++.||.+|+.+..+.
T Consensus 94 s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~------~~~~~~~l~~---~~--~~~~~GQ~ldl~~~~~~-- 160 (284)
T 2ftz_A 94 ADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIG------NSXIFEEFSE---TA--YXLLLGEAMDVEFERRX-- 160 (284)
T ss_dssp CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTC------CHHHHHHHHH---HH--HHHHHHHHHHHHHHHSC--
T ss_pred CCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHH---HH--HHHhhhhHHHHHhccCc--
Confidence 78899999999999999999999999999999999873 1345555544 33 57999999999987531
Q ss_pred ccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHH
Q 020845 210 DRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFK 288 (320)
Q Consensus 210 ~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~D 288 (320)
...++++|.+|+++|||+||++||++|++++|++++ .+++||.++|++|||+||++|++++++++ |++|+|
T Consensus 161 -----~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~D 232 (284)
T 2ftz_A 161 -----MEVSQEMVERMYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKD 232 (284)
T ss_dssp -----CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_pred -----CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchh
Confidence 036899999999999999999999999999998876 89999999999999999999999998877 889999
Q ss_pred HH
Q 020845 289 LR 290 (320)
Q Consensus 289 l~ 290 (320)
++
T Consensus 233 l~ 234 (284)
T 2ftz_A 233 TE 234 (284)
T ss_dssp --
T ss_pred cc
Confidence 84
No 26
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=9.3e-54 Score=412.27 Aligned_cols=243 Identities=20% Similarity=0.275 Sum_probs=199.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhC-CChHHHhhHHHHHHHHHHHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVG-GHREQAIVAAAALHVMHAASFI 119 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g-~~~~~~~~lAaavEliH~asLI 119 (320)
.+..+++...+.|++.|++.++... ..+.++++|++..||||+||+||+++++++| ++.+.+.++|++|||||+||||
T Consensus 35 ~~~~~l~~~l~~ve~~l~~~~~~~~-~~l~~~~~y~~~~gGKrlRp~L~ll~~~~~~~~~~~~~~~~A~avEliH~asLI 113 (360)
T 3lmd_A 35 ELTARINDAMVQVEELLHTELSSGE-DFLVDIVMHLTRAGGKRFRPMFALLASEFGEKPLSENVIKAAVVVEITHLATLY 113 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHCCCCSCCHHHHHHHHHHTTSSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHCCCCcHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999998764 4699999999999999999999999999998 7778899999999999999999
Q ss_pred HhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHH
Q 020845 120 HENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYN 199 (320)
Q Consensus 120 HDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~l 199 (320)
||| |||+ +.+|||+||+|++||+++|||+||+|++.||+++++.. + .+++++.+ ++ .+++.||.+
T Consensus 114 HDD--ImD~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~------~-~~~~~~~~---~~--~~~~~GQ~l 178 (360)
T 3lmd_A 114 HDD--VMDE-ASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG------T-DTVAHFAE---TF--GELVTGQMR 178 (360)
T ss_dssp HHH--HHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHC------H-HHHHHHHH---HH--HHHHHHHHH
T ss_pred hCC--CcCC-CCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC------H-HHHHHHHH---HH--HHHHHHHHH
Confidence 999 8999 78899999999999999999999999999999999873 2 45555544 33 469999999
Q ss_pred HhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 020845 200 ELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEI 279 (320)
Q Consensus 200 Dl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 279 (320)
|+.+... ..+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++
T Consensus 179 dl~~~~~---------~~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~ 249 (360)
T 3lmd_A 179 ETVGPRD---------TDPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSET 249 (360)
T ss_dssp HHHCCTT---------SCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhccCC---------CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCh
Confidence 9998763 2689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 280 EEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 280 ~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
+++ |++++||+| ++. ..++++.|.+++..
T Consensus 250 ~~~GK~~g~Dl~egK~Tlp~l~al~~-~~~~~~~L~~~l~~ 289 (360)
T 3lmd_A 250 HESGKTPGTDLREGVFTLPVLYALRE-DTPVGAELRDILTG 289 (360)
T ss_dssp ------CCHHHHHTCCCHHHHHHHHC-CSHHHHHHHHHCSS
T ss_pred hhhCCCchhHHhcCCchHHHHHHHHc-CCchHHHHHHHHcC
Confidence 888 999999998 665 34566777777654
No 27
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=5.1e-54 Score=409.86 Aligned_cols=227 Identities=16% Similarity=0.263 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
+...++.-.+.|++.|++.++... ..+.++++|++..||||+||.||+++++++|++.+.+.++|+++|++|+||||||
T Consensus 6 ~~~~~~~~~~~v~~~l~~~~~~~~-~~l~~~~~~~~~~gGKr~Rp~l~l~~~~~~g~~~~~~~~~A~avEliH~asLiHD 84 (325)
T 3aqb_B 6 YKAFLNPYIIEVEKRLYECIQSDS-ETINKAAHHILSSGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLELVHMASLVHD 84 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHSCCCCHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 344555556678888888887654 4599999999999999999999999999999888889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHh
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNEL 201 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl 201 (320)
| |||+ |.+|||+||+|++||+++|||+||+|++.||+++++... .++++++.+.. .+++.||.+|+
T Consensus 85 D--i~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ~~dl 150 (325)
T 3aqb_B 85 D--YIDN-SDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINN------SKFHQIFSKTI-----LEVCFGEFDQM 150 (325)
T ss_dssp H--HHHT-CCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCC------HHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred c--cccC-CCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHH-----HHHHHHHHHHH
Confidence 9 8999 789999999999999999999999999999999998632 35556555443 46999999999
Q ss_pred hcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH
Q 020845 202 QCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEE 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~ 281 (320)
.+..+ ...+++.|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++++
T Consensus 151 ~~~~~--------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 222 (325)
T 3aqb_B 151 ADRFN--------YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEAT 222 (325)
T ss_dssp HTTTC--------CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HcccC--------CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 98753 2368999999999999999999999999999999999999999999999999999999999999988
Q ss_pred h-hhHHHHHHH
Q 020845 282 L-KKLAFKLRE 291 (320)
Q Consensus 282 ~-k~~~~Dl~e 291 (320)
+ |++|+||+|
T Consensus 223 ~GK~~g~Dl~~ 233 (325)
T 3aqb_B 223 LGKPVGSDIRN 233 (325)
T ss_dssp HSSCTTHHHHT
T ss_pred cCCccchHhhC
Confidence 8 999999987
No 28
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-53 Score=404.62 Aligned_cols=242 Identities=18% Similarity=0.132 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCC
Q 020845 47 TSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLS 126 (320)
Q Consensus 47 ~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~ 126 (320)
+.+.+.|++.|++.+... +..+.++++|++..||||+||.||+++++++|++.+.+..+|++||+||+||||||| ||
T Consensus 6 ~~~~~~v~~~l~~~~~~~-~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLihDD--i~ 82 (330)
T 1wmw_A 6 EAIRQALQERLLARLDHP-DPLYRDLLQDYPRRGGKMLRGLLTVYSALAHGAPLEAGLEAATALELFQNWVLVHDD--IE 82 (330)
T ss_dssp HHHHHHHHHHHHHHTCCS-SHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcc--cc
Confidence 456667778888877654 346999999999999999999999999999999888899999999999999999999 89
Q ss_pred CCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhc-cc
Q 020845 127 DRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQC-SQ 205 (320)
Q Consensus 127 D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~-~~ 205 (320)
|+ |.+|||+||+|++||+++|||+||+|++.||+++++.... ...+.++++++.+.. .+++.||.+|+.+ ..
T Consensus 83 D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~-----~~~~~GQ~~dl~~~~~ 155 (330)
T 1wmw_A 83 DG-SEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLAR-GLFPPEVLLEFHEVV-----RRTAYGQHLDLLWTLG 155 (330)
T ss_dssp HT-CCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHH-----HHHHHHHHHHHHHHHS
T ss_pred cC-CCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHH-----HHHHHHHHHHHHhccc
Confidence 99 7899999999999999999999999999999999986321 112245566555443 5699999999998 64
Q ss_pred CCCcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-h
Q 020845 206 CDDDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-K 283 (320)
Q Consensus 206 ~~~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k 283 (320)
+. ...+++.|++|+++|||+| |++||++|++++|++++.. +++||.++|++|||+||++|++++++ + |
T Consensus 156 ~~-------~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK 225 (330)
T 1wmw_A 156 GT-------FDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGK 225 (330)
T ss_dssp SS-------CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSS
T ss_pred CC-------CCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCC
Confidence 20 1368999999999999999 9999999999999987766 99999999999999999999999988 7 9
Q ss_pred hHHHHHHH----------hccCCHHHHHHHHHHHh
Q 020845 284 KLAFKLRE----------VNSFNDENAEVIFSLVD 308 (320)
Q Consensus 284 ~~~~Dl~e----------l~~~~~~~~~~l~~~~~ 308 (320)
++++||+| ++..++++++.|.++++
T Consensus 226 ~~g~Dl~egK~T~p~i~al~~~~~~~~~~l~~~~~ 260 (330)
T 1wmw_A 226 ERAGDLYEGKRTLILLRFLEEAPPEERARALALLA 260 (330)
T ss_dssp STTHHHHHTCCCHHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CcCchhhCCCCCHHHHHHHHhCCHHHHHHHHHHHc
Confidence 99999998 77788888888888876
No 29
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.2e-52 Score=407.61 Aligned_cols=248 Identities=22% Similarity=0.276 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCc--ccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC------hHHHhhHHHHHHH
Q 020845 44 SYWTSVHEDIGAHLRQAVVV---KEP--VEVYEPMRHFVFAAPVNMAPALCVAACELVGGH------REQAIVAAAALHV 112 (320)
Q Consensus 44 ~~~~~~~~~ie~~L~~~i~~---~~~--~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~------~~~~~~lAaavEl 112 (320)
.....+.+.+++.+.+..+. ..| ..+.+++.|++..||||+||+||+++++++|++ .+.++++|++|||
T Consensus 20 ~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~~~AaaiEl 99 (380)
T 3lk5_A 20 KFPEVVRDRLTQFLDAQELTIADIGAPVTDAVAHLRSFVLNGGKRIRPLYAWAGFLAAQGHKNSSEKLESVLDAAASLEF 99 (380)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhhccCccHHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH
Confidence 34455555555555443221 122 237888889888999999999999999999874 6789999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCccccc----------------CChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHH
Q 020845 113 MHAASFIHENLPLSDRTSLIPKSKPTMYHA----------------FKPNTELLVADAMLPFGLELLASSDNPAGNNSGR 176 (320)
Q Consensus 113 iH~asLIHDDlPi~D~Ds~~RRG~pt~h~~----------------~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~ 176 (320)
||+||||||| |||+ |.+|||+||+|++ ||+++|||+||+|++.||+++++... ++..
T Consensus 100 iH~asLIHDD--ImD~-s~~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~----~~~~ 172 (380)
T 3lk5_A 100 IQACALIHDD--IIDS-SDTRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGL----SAEA 172 (380)
T ss_dssp HHHHHHHHHH--HHTC------------------------------CHHHHHHHHHHHHHHHHHHHHHTSCC----CHHH
T ss_pred HHHHHHHHCC--CcCC-CCCCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCC----CHHH
Confidence 9999999999 8999 8899999999997 59999999999999999999998753 2333
Q ss_pred HHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcCCCHHHHHHH
Q 020845 177 ILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGGGSEKEIELL 255 (320)
Q Consensus 177 ~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag~~~~~~~~l 255 (320)
..+++..++... .+++.||++|+.+... ...+++.|++|+++|||+| |++||++|++++|++++..+.+
T Consensus 173 ~~~~~~~~~~~~--~~~~~GQ~lDl~~~~~--------~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l 242 (380)
T 3lk5_A 173 LARTRDAWRGMR--TEVIGGQLLDIYLESH--------ANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDAL 242 (380)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhccC--------CCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 344444444332 4689999999998763 1358999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHHHH----------hccC---CHHHHHHHHHHHh
Q 020845 256 RRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKLRE----------VNSF---NDENAEVIFSLVD 308 (320)
Q Consensus 256 ~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl~e----------l~~~---~~~~~~~l~~~~~ 308 (320)
++||.++|+||||+||++|++++++++ |++|+||+| ++.. ++++++.|.+++.
T Consensus 243 ~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~ 309 (380)
T 3lk5_A 243 LHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGDDIREGKRTVLLALALQRADKQSPEAATAIRAGVG 309 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchHHHHHHHHhCccCChHHHHHHHHHHC
Confidence 999999999999999999999999988 999999998 6554 3567888888875
No 30
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=3e-52 Score=398.78 Aligned_cols=222 Identities=16% Similarity=0.241 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCC--ChHHHhhHHHHHHHHHHHHHHHhCCC
Q 020845 47 TSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGG--HREQAIVAAAALHVMHAASFIHENLP 124 (320)
Q Consensus 47 ~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~--~~~~~~~lAaavEliH~asLIHDDlP 124 (320)
+.-.+.|++.|++.++...| .+.++++|++..||||+||+||+++++ +|+ +.+.+..+|++|||||+|||||||
T Consensus 22 ~~~l~~v~~~l~~~~~~~~~-~l~~~~~~~~~~gGKrlRp~l~l~~~~-~g~~~~~~~~~~~A~aiEliH~asLiHDD-- 97 (334)
T 3pko_A 22 EPQLTALQDYLLRTVQLDNQ-PIHHKILALLKSGGKLLRPGYFYLFST-FGNAATPAQLQAGAAAIEILHVGTLIHDD-- 97 (334)
T ss_dssp HHHHHHHHHHHHHHCCCSCH-HHHHHHHHHHHHCCCCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhccCCh-HHHHHHHHHHhCCCCcHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHhCc--
Confidence 34455677778787776655 599999999999999999999999999 665 778899999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcc
Q 020845 125 LSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCS 204 (320)
Q Consensus 125 i~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~ 204 (320)
|||+ |.+|||+||+|++||+++|||+||+|++.||+++++... ...+++.+.+ ++ .+++.||.+|+.+.
T Consensus 98 i~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~-----~~~~~~~~~~---~~--~~~~~Gq~~dl~~~ 166 (334)
T 3pko_A 98 VIDD-SPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTT-----DRSLIQNHID---AM--HRILQGELHQMDLN 166 (334)
T ss_dssp HHHT-CSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHH---HH--HHHHHHHHHHHHTT
T ss_pred cCCC-CCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHH---HH--HHHHHHHHHHHHhc
Confidence 8999 789999999999999999999999999999999998753 1345555544 33 56899999999876
Q ss_pred cCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-h
Q 020845 205 QCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-K 283 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k 283 (320)
.. ...+++.|++|+++|||+||++||++|++++|++++..+.+++||.++|+||||+||++|++++++++ |
T Consensus 167 ~~--------~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK 238 (334)
T 3pko_A 167 YR--------EDITLDAYLNEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQK 238 (334)
T ss_dssp TC--------TTCCHHHHHHHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCH
T ss_pred cC--------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCC
Confidence 52 23789999999999999999999999999999999999999999999999999999999999999888 9
Q ss_pred hHHHHHHH
Q 020845 284 KLAFKLRE 291 (320)
Q Consensus 284 ~~~~Dl~e 291 (320)
++|+||+|
T Consensus 239 ~~g~Dl~e 246 (334)
T 3pko_A 239 PVLEDLRS 246 (334)
T ss_dssp HHHHHHHT
T ss_pred CCCCcccc
Confidence 99999998
No 31
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=7.5e-52 Score=389.59 Aligned_cols=205 Identities=22% Similarity=0.347 Sum_probs=179.5
Q ss_pred HHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q 020845 51 EDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTS 130 (320)
Q Consensus 51 ~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds 130 (320)
..|++.|++.++...+..+.++++|.+..||||+||.||+++++++|++++.+.++|++||+||+||||||| |||+ +
T Consensus 12 ~~i~~~l~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHDD--i~D~-s 88 (295)
T 3ipi_A 12 RYVEAGIKESITLIEDPGLKKMVEHVCHSGGKRIRPIILLLVSEICSGSYSRSLNAALAVEMMHSASLIHDD--LLDQ-G 88 (295)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHHH--HHHH-H
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCc--CcCC-C
Confidence 677788877776544456999999999999999999999999999999999999999999999999999999 7999 7
Q ss_pred CCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcc
Q 020845 131 LIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 210 (320)
Q Consensus 131 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~ 210 (320)
++|||+||+|++||+++|||+||+|++.||+++++.. ..+++++.+ ++ .+++.||.+|+.+...
T Consensus 89 ~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~~-------~~~~~~~~~---~~--~~~~~GQ~~dl~~~~~---- 152 (295)
T 3ipi_A 89 LVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPYG-------EKVIQDFGK---AG--MDMAEGEVLDLKLEDE---- 152 (295)
T ss_dssp TSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGGC-------HHHHHHHHH---HH--HHHHHHHHHHHC--------
T ss_pred CCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHch-------HHHHHHHHH---HH--HHHHccchHHHHccCC----
Confidence 8899999999999999999999999999999998763 244555544 33 4689999999998752
Q ss_pred cccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 020845 211 RKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEI 279 (320)
Q Consensus 211 ~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~ 279 (320)
..+++.|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++
T Consensus 153 -----~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~ 216 (295)
T 3ipi_A 153 -----SFGENDYFKCIYKKTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVV 216 (295)
T ss_dssp --------CHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2577889999999999999999999999999999999999999999999999999999999865
No 32
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=8.1e-53 Score=411.16 Aligned_cols=287 Identities=14% Similarity=0.088 Sum_probs=200.9
Q ss_pred cccCCCCCCCCCCCCCCCccccccCCCcchHHHHHHHHHHHHHHHHHHhhccCCccc-----HHhHHHhhccCCCCcchH
Q 020845 12 AHVAPRRNHSRPSLSYRPMMVTMAMSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVE-----VYEPMRHFVFAAPVNMAP 86 (320)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~-----l~e~~~y~~~~gGKrlRp 86 (320)
.|-|.|.+-+-. +.++.......+....|+..++++++.|.+.|++......|.. +...+.|.+ .||||+||
T Consensus 8 ~~~~g~~n~~f~--~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKRlRP 84 (395)
T 3mav_A 8 HHSSGRENLYFQ--GMKETNSEEADSGLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRG 84 (395)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHH
T ss_pred cccCCCcchhhc--cccccCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcCC-CCchhhhH
Confidence 467778876644 4555555666777778999999999999999987543222222 333455666 69999999
Q ss_pred HHHHHHHHHhCCC------hHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHH--HH
Q 020845 87 ALCVAACELVGGH------REQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAML--PF 158 (320)
Q Consensus 87 ~L~l~~~~~~g~~------~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~--~~ 158 (320)
+||+++++++|+. .+.+..+|+||||||+||||||| |||+ |.+|||+||+|++||+++||++||+|+ +.
T Consensus 85 ~l~l~~~~~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDD--ImD~-s~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~ 161 (395)
T 3mav_A 85 ILVILIYEYVKNRDINSSEWEKAACLAWCIEILQAAFLVADD--IMDK-GEMRRNKYCWYLLKDVETKNAVNDVLLLYNS 161 (395)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTT-CSEETTEECGGGSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhH--HhcC-CCCCCCchhhhhccchHHHHHhhhHHHHHHH
Confidence 9999999998763 25789999999999999999999 8999 889999999999999999999999876 45
Q ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCC---------------Ccc-cccCCCCCHHHH
Q 020845 159 GLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD---------------DDD-RKLNGITDVEMT 222 (320)
Q Consensus 159 a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~---------------~~~-~~~~~~~~~e~y 222 (320)
+|.++.....+ .....++++++.+.. .+++.||.+|+.+.... ++. .......+++.|
T Consensus 162 ~~~ll~~~~~~-~~~~~~~~~~~~~~~-----~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y 235 (395)
T 3mav_A 162 IYKLIEIYLRN-ESCYVDVIATFRDAT-----LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVY 235 (395)
T ss_dssp HHHHHHHHHTT-STTHHHHHHHHHHHH-----HHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHH
T ss_pred HHHHHHHhccC-hhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHH
Confidence 68888765321 112334455554433 56899999999765320 000 000013689999
Q ss_pred HHHHHhcHHHH-HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHH--------
Q 020845 223 YETYKKKEGRL-HACGAACGAILGGGS--EKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKLRE-------- 291 (320)
Q Consensus 223 ~~ii~~KTg~L-f~~a~~~Gailag~~--~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl~e-------- 291 (320)
++|+++|||+| |.+||.+|++++|++ ++..+.+++||.++|+||||+||++|+++++++++++|+||+|
T Consensus 236 ~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~egK~T~p~i 315 (395)
T 3mav_A 236 KNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLI 315 (395)
T ss_dssp HHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCTTTTTCCCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhhhcccccHHhcCCchHHHH
Confidence 99999999999 999999999999875 3467899999999999999999999999999999668999998
Q ss_pred --hccCCHHHHHHHHHHHhcc
Q 020845 292 --VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 292 --l~~~~~~~~~~l~~~~~~~ 310 (320)
++.+++++++.|.+.+...
T Consensus 316 ~al~~~~~~~r~~L~~~~~~~ 336 (395)
T 3mav_A 316 KTFELCSEPDKIKIVKNYGKN 336 (395)
T ss_dssp HHHHHSCHHHHHHHHHHTTCS
T ss_pred HHHHhCCHHHHHHHHHHhCCC
Confidence 8888999999998887643
No 33
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=4.3e-52 Score=403.24 Aligned_cols=256 Identities=11% Similarity=0.041 Sum_probs=215.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcc----CCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh----H---HHhhHHH
Q 020845 40 NKNKSYWTSVHEDIGAHLRQAVVV----KEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR----E---QAIVAAA 108 (320)
Q Consensus 40 ~~~~~~~~~~~~~ie~~L~~~i~~----~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~----~---~~~~lAa 108 (320)
..++.|++.+...|++.+...++. ..+..+.++++|.+ .||||+||+||+++++++|++. + .+..+|+
T Consensus 33 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~a~~~A~ 111 (374)
T 2qis_A 33 QEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNA-IGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGW 111 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC--CGGGHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCCCCccchHHHHHHHHHHH
Confidence 568889999999999988877653 12356889999987 7999999999999999998742 2 4788999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChh-HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Q 020845 109 ALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPN-TELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRA 187 (320)
Q Consensus 109 avEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a 187 (320)
||||||+||||||| |||+ |++|||+||+|++||++ +||++||++++.+|+++++.... .....++++++.+..
T Consensus 112 avEliH~asLIHDD--ImD~-s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~-- 185 (374)
T 2qis_A 112 CVELLQAFFLVADD--IMDS-SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCRE-QPYYLNLIELFLQSS-- 185 (374)
T ss_dssp HHHHHHHHHHHHHH--HHTT-CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcc--ccCC-CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcc-cccHHHHHHHHHHHH--
Confidence 99999999999999 7999 78999999999999999 99999999999999999975221 113456666666655
Q ss_pred hchhhhhHHHHHHhhcccCC-CcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 020845 188 MGSQGVVEGQYNELQCSQCD-DDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGG-GSEKEIELLRRYGFYVGM 264 (320)
Q Consensus 188 ~g~~~~~~GQ~lDl~~~~~~-~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag-~~~~~~~~l~~~G~~lG~ 264 (320)
.+++.||.+|+.+.... .++ ...+++.|..|+++|||+| |++||++|++++| ++++..+.+++||.++|+
T Consensus 186 ---~~~~~GQ~lDl~~~~~~~~d~----~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~ 258 (374)
T 2qis_A 186 ---YQTEIGQTLDLLTAPQGNVDL----VRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGE 258 (374)
T ss_dssp ---HHHHHHHHHHHHHSCTTCCCG----GGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHccccccccc----ccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 45899999999987521 110 0268999999999999999 9999999999999 999999999999999999
Q ss_pred HHHHHhhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 265 IQGIVSRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 265 afQi~DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
+|||+||++|+++++++++++|+||+| ++..++++++.|.+.+..
T Consensus 259 aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a~~~~~~~l~~~~~~ 313 (374)
T 2qis_A 259 FFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQ 313 (374)
T ss_dssp HHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 999999999999999999339999987 788888888888887754
No 34
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=2.3e-52 Score=400.61 Aligned_cols=246 Identities=15% Similarity=0.153 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhhcc--CCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCC
Q 020845 50 HEDIGAHLRQAVVV--KEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSD 127 (320)
Q Consensus 50 ~~~ie~~L~~~i~~--~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D 127 (320)
..+|++.+.+.++. ..+..+.++++|++..||||+||+||+++++++|++.+.+..+|++||+||+||||||| |||
T Consensus 7 ~~~v~~~l~~~~~~~~~~~~~l~~~~~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDD--I~D 84 (340)
T 2e8v_A 7 EAKIDELINNDPVWSSQNESLISKPYNHILLKPGKNFRLNLIVQINRVMNLPKDQLAIVSQIVELLHNSSLLIDD--IED 84 (340)
T ss_dssp HHHHHHHHTSCCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHT
T ss_pred HHHHHHHHHhcccccccChHHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhCc--ccc
Confidence 44577777765531 12345999999999999999999999999999999888899999999999999999999 899
Q ss_pred CCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCC
Q 020845 128 RTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCD 207 (320)
Q Consensus 128 ~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~ 207 (320)
+ |.+|||+||+|++||+++|||+||+|++.||+++++...+ .....+++..+++.+ .+++.||++|+.+....
T Consensus 85 ~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~--~~~~~GQ~ldl~~~~~~ 157 (340)
T 2e8v_A 85 N-APLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTK----EPLYHNLITIFNEEL--INLHRGQGLDIYWRDFL 157 (340)
T ss_dssp T-CSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCC----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHST
T ss_pred C-CCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCc----hhhHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence 9 8899999999999999999999999999999999998542 233334444445544 67999999999987531
Q ss_pred CcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHH
Q 020845 208 DDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLA 286 (320)
Q Consensus 208 ~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~ 286 (320)
+. ...+++.|++|+++|||+||+++|++|++++|+++ ..+.+++||.++|++|||+||++|++++++++ |++|
T Consensus 158 ~~-----~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g 231 (340)
T 2e8v_A 158 PE-----IIPTQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFA 231 (340)
T ss_dssp TS-----CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTT
T ss_pred cc-----CCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCch
Confidence 00 12689999999999999999999999999999987 57899999999999999999999999999888 9999
Q ss_pred HHHHH----------hccCCH----HHHHHHHHHHhcc
Q 020845 287 FKLRE----------VNSFND----ENAEVIFSLVDDN 310 (320)
Q Consensus 287 ~Dl~e----------l~~~~~----~~~~~l~~~~~~~ 310 (320)
+||+| ++...+ ++++.|.+++...
T Consensus 232 ~Dl~egK~Tlp~i~al~~~~~~~~~~~~~~l~~~l~~~ 269 (340)
T 2e8v_A 232 EDITEGKLSFPIVHALNFTKTKGQTEQHNEILRILLLR 269 (340)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHhcCCchHHHHHHHHhCcccccchhHHHHHHHHhCC
Confidence 99998 554433 2456677776543
No 35
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.2e-51 Score=391.58 Aligned_cols=233 Identities=14% Similarity=0.212 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCCh--HHHhhHHHHHHHHHHHHHHHhCCCCC
Q 020845 49 VHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHR--EQAIVAAAALHVMHAASFIHENLPLS 126 (320)
Q Consensus 49 ~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~--~~~~~lAaavEliH~asLIHDDlPi~ 126 (320)
+...|++.|.+.++...+..+.+ .|.+..||||+||+||+++++..+... +.+.++|++|||||+||||||| ||
T Consensus 5 ~~~~i~~~l~~~~~~~~~~~~~~--~y~~~~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~A~aiEliH~asLiHDD--i~ 80 (315)
T 3tc1_A 5 QLKAIQNKIASWIKEIESGFIDE--LFSKIGPSKMLRSKLMLALLNEKTDAILLDKALNLCTIVEMIQTASLLHDD--VI 80 (315)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHH--HHTTCCCCCCHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHH--HHHhcCCcccHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHcC--CC
Confidence 34445555555544222222443 577779999999999999998433333 5678999999999999999999 89
Q ss_pred CCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccC
Q 020845 127 DRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQC 206 (320)
Q Consensus 127 D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~ 206 (320)
|+ |.+|||+||+|++||+++|||+||+|++.||+++++.. ..+++++.+. + .+++.||.+|+.+..+
T Consensus 81 D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-------~~~~~~~~~~---~--~~~~~GQ~~dl~~~~~ 147 (315)
T 3tc1_A 81 DK-ATMRRKLPSINALFGNFNAVMLGDVFYSKAFFELSKMG-------ELIAQALSNA---V--LRLSRGEIEDVFVGEC 147 (315)
T ss_dssp -----------------CCSHHHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHH---H--HHHHHHHHHHHHHTTS
T ss_pred CC-CCCcCCCccHHHHhCchHHHHHHHHHHHHHHHHHHHCc-------HHHHHHHHHH---H--HHHHHHHHHHHHcCCC
Confidence 99 78899999999999999999999999999999999763 3455555443 3 5699999999998763
Q ss_pred CCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhH
Q 020845 207 DDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKL 285 (320)
Q Consensus 207 ~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~ 285 (320)
...+++.|.+|+++|||+||++||++|++++|++ .+.+++||.++|++|||+||++|++++++++ |++
T Consensus 148 --------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~ 216 (315)
T 3tc1_A 148 --------FNSDKQKYWRILEDKTAHFIEASLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPN 216 (315)
T ss_dssp --------CCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred --------CCCCHHHHHHHHhcchHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCCh
Confidence 2378999999999999999999999999999998 6789999999999999999999999999888 999
Q ss_pred HHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 286 AFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 286 ~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
|+||+| ++..++++++.|.+++..
T Consensus 217 g~Dl~egK~T~p~i~al~~~~~~~~~~L~~~l~~ 250 (315)
T 3tc1_A 217 FSDFKEGKTTLPYLLLYEKLNQHDQGLLISYFKQ 250 (315)
T ss_dssp CCTGGGTCCCHHHHHHHTTSCHHHHHHHHHTTTC
T ss_pred hhHHHcCChhHHHHHHHHhCCHHHHHHHHHHHcC
Confidence 999998 787888888888887764
No 36
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=6.5e-52 Score=391.00 Aligned_cols=209 Identities=19% Similarity=0.208 Sum_probs=184.8
Q ss_pred HHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCC-ChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCC
Q 020845 52 DIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGG-HREQAIVAAAALHVMHAASFIHENLPLSDRTS 130 (320)
Q Consensus 52 ~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~-~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds 130 (320)
.|++.|++.+....| ++++|++..||||+||.||+++++++|+ +.+.+.++|++||++|+||||||| |||+ |
T Consensus 15 ~v~~~l~~~~~~~~~----~~~~y~~~~gGKrlRp~l~l~~~~~~g~~~~~~~~~~A~avEliH~asLiHDD--i~D~-s 87 (299)
T 1v4e_A 15 KVKERIEQILSQFFP----EQIMKDLPLYGKMLRVRLSILSFKNRGVEIGEDAISSLAALELVHLASLLHDD--VIDG-A 87 (299)
T ss_dssp HHHHHHHHHHHHHSC----HHHHTTSCCCCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHT-C
T ss_pred HHHHHHHHHhccCCH----HHHHHHHhCCCCcHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHhhCC--CCCC-C
Confidence 455555555543333 8999999999999999999999999998 778889999999999999999999 8999 7
Q ss_pred CCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcc
Q 020845 131 LIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDD 210 (320)
Q Consensus 131 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~ 210 (320)
++|||+||+|.+||+++|||+||+|++.||+++++... .++++++.+.. .+++.||.+|+.+..+
T Consensus 88 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~-----~~~~~GQ~~dl~~~~~---- 152 (299)
T 1v4e_A 88 RFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGN------NKLRRAFLNVI-----GKMSEAELIEQLSRYK---- 152 (299)
T ss_dssp SEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHH-----HHHHHHHHHHHHHTTS----
T ss_pred CCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCCh------HHHHHHHHHHH-----HHHhhhHHHHHHccCC----
Confidence 89999999999999999999999999999999998742 35566655443 5699999999998763
Q ss_pred cccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHH
Q 020845 211 RKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKL 289 (320)
Q Consensus 211 ~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl 289 (320)
. .+++.|.+|+++|||+||++||++|++++|+++ +.+++||.++|++|||+||++|++++ +++ |++|+||
T Consensus 153 ----~-~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl 223 (299)
T 1v4e_A 153 ----P-ITKEEYLRIVEGKSGALFGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDL 223 (299)
T ss_dssp ----C-CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCC
T ss_pred ----C-CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHh
Confidence 2 689999999999999999999999999999876 89999999999999999999999999 777 8999999
Q ss_pred HH
Q 020845 290 RE 291 (320)
Q Consensus 290 ~e 291 (320)
+|
T Consensus 224 ~e 225 (299)
T 1v4e_A 224 KN 225 (299)
T ss_dssp TT
T ss_pred hC
Confidence 87
No 37
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.2e-51 Score=400.31 Aligned_cols=261 Identities=12% Similarity=0.072 Sum_probs=204.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhccCCc-----ccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC------hHHHhhH
Q 020845 38 TPNKNKSYWTSVHEDIGAHLRQAVVVKEP-----VEVYEPMRHFVFAAPVNMAPALCVAACELVGGH------REQAIVA 106 (320)
Q Consensus 38 ~~~~~~~~~~~~~~~ie~~L~~~i~~~~~-----~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~------~~~~~~l 106 (320)
...+|..+|..+++.|.+.++.......+ ..+.++++|.+ .||||+||+||+++++++|++ .+.+..+
T Consensus 32 ~~~~f~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~-~GGKrlRp~Lvl~~~~~~g~~~~~~~~~~~a~~l 110 (395)
T 2ihi_A 32 GLAFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNC-LGGKNNRGILVILIYEYVKNRDINSSEWEKAACL 110 (395)
T ss_dssp ---CTTTTHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhhhhhHHHHHHHHHHhhc-cCcccHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 44578999999999999999863221112 45678899988 999999999999999999875 2578899
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhH--HHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 020845 107 AAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNT--ELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEM 184 (320)
Q Consensus 107 AaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~--AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~ 184 (320)
|+||||||+||||||| |||+ |.+|||+||+|+.||++. |||+||+|++.+|+++++...+ .....++++++.+.
T Consensus 111 A~aiEliH~asLIHDD--ImD~-s~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~-~~~~~~~~~~~~~~ 186 (395)
T 2ihi_A 111 AWCIEILQAAFLVADD--IMDK-GEMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRN-ESCYVDVIATFRDA 186 (395)
T ss_dssp HHHHHHHHHHHHHHHH--HHTT-CSEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cccC-CCCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccC-chhHHHHHHHHHHH
Confidence 9999999999999999 7999 889999999999999998 9999999999999999975221 11234566666555
Q ss_pred HHHhchhhhhHHHHHHh-hcc--------------cCCC-cccccC-CCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcC
Q 020845 185 TRAMGSQGVVEGQYNEL-QCS--------------QCDD-DDRKLN-GITDVEMTYETYKKKEGRL-HACGAACGAILGG 246 (320)
Q Consensus 185 ~~a~g~~~~~~GQ~lDl-~~~--------------~~~~-~~~~~~-~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag 246 (320)
. .+++.||.+|+ .|. ...+ +- ..+ ...+++.|..|+++|||+| |.+||++|++++|
T Consensus 187 ~-----~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~-~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag 260 (395)
T 2ihi_A 187 T-----LKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQP-VIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAG 260 (395)
T ss_dssp H-----HHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CC-CCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred H-----HHHHHhHHHHHHhhhhcccccccccccccccccccc-cccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcC
Confidence 4 46899999999 331 0000 00 000 0368999999999999999 9999999999999
Q ss_pred CCHHH--HHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 247 GSEKE--IELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 247 ~~~~~--~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
++++. .+.+++||.++|+||||+||++|+++++++++++|+||+| ++.+++++++.|.+++..
T Consensus 261 ~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~ 335 (395)
T 2ihi_A 261 IAVDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGK 335 (395)
T ss_dssp CCTTCTHHHHHHHHHHHHHHHHHHHHHHHHSCC---------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 98887 8999999999999999999999999999988339999988 888899999999888754
No 38
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=3.2e-51 Score=398.83 Aligned_cols=263 Identities=10% Similarity=0.045 Sum_probs=213.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccC--CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCC-------------Ch
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVK--EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGG-------------HR 100 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~--~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~-------------~~ 100 (320)
..+...|..+|+.+.+.|.+.+.+.++.. .+.++.++++|.+ .||||+||+||+++++++|+ +.
T Consensus 23 ~~~~~~f~~~~~~v~~~l~~~l~~~~~~~~~~~~~l~~~m~Y~~-~GGKr~Rp~l~l~~~~~l~~~~~~~~~~~~~~~~~ 101 (390)
T 3dyh_A 23 SMPMQMFMQVYDEIQMFLLEELELKFDMDPNRVRYLRKMMDTTC-LGGKYNRGLTVIDVAESLLSLSPNNNGEEDDGARR 101 (390)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHTSCC---------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHhhc-CCccchhHHHHHHHHHHhCCccccccccccccCCH
Confidence 34566789999999999999988765532 2346999999998 99999999999999999886 23
Q ss_pred HHHhhHHH----HHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHH--HHHHHHhcCCCCCCCh
Q 020845 101 EQAIVAAA----ALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPF--GLELLASSDNPAGNNS 174 (320)
Q Consensus 101 ~~~~~lAa----avEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~--a~~ll~~~~~~~~~~~ 174 (320)
+.++++|+ ||||||+||||||| |||+ |.+|||+||+|+.||+++||++||+++.. +|+++++.... ....
T Consensus 102 ~~~~~~A~~~g~avEliH~asLIHDD--ImD~-s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~-~~~~ 177 (390)
T 3dyh_A 102 KRVLHDACVCGWMIEFLQAHYLVEDD--IMDN-SVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFAD-RPFL 177 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHT-CCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTT-CTTH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHcC--CcCC-CCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccC-chhH
Confidence 55666666 79999999999999 7999 78999999999999999999999999864 57888875321 1123
Q ss_pred HHHHHHHHHHHHHhchhhhhHHHHHHhhcccC----CCcc---cccC-CCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhc
Q 020845 175 GRILRVMVEMTRAMGSQGVVEGQYNELQCSQC----DDDD---RKLN-GITDVEMTYETYKKKEGRL-HACGAACGAILG 245 (320)
Q Consensus 175 ~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~----~~~~---~~~~-~~~~~e~y~~ii~~KTg~L-f~~a~~~Gaila 245 (320)
.++++++.+.. .+++.||.+|+.+... .++. ...+ ...+++.|+.|+++|||+| |++||++|++++
T Consensus 178 ~~~~~~~~~~~-----~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~la 252 (390)
T 3dyh_A 178 QDLLCRFNRVD-----YTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVS 252 (390)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHc
Confidence 45666666554 4589999999987310 0000 0000 1378999999999999999 999999999999
Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 246 GGSEKE-IELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 246 g~~~~~-~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
|++++. .+.+++||.++|+||||+||++|+++|++++ | +|+||+| ++..++++++.|.+++..
T Consensus 253 ga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~ 327 (390)
T 3dyh_A 253 EALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLGK-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGS 327 (390)
T ss_dssp TCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhCC-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 998775 7899999999999999999999999999999 6 9999988 788889998888887753
No 39
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=2.3e-51 Score=394.92 Aligned_cols=219 Identities=16% Similarity=0.188 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhhccCCcccHHhHHHhhccCC--CCcchHHHHHHHHHHhCCCh-----------------HHHhhHHHHH
Q 020845 50 HEDIGAHLRQAVVVKEPVEVYEPMRHFVFAA--PVNMAPALCVAACELVGGHR-----------------EQAIVAAAAL 110 (320)
Q Consensus 50 ~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~lAaav 110 (320)
.+.|++.|++.+....| .+.++++|++..| |||+||.||+++++++|++. +.+..+|++|
T Consensus 18 l~~v~~~l~~~~~~~~~-~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~av 96 (348)
T 3apz_A 18 LSLLSNKLREMVLAEVP-KLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEIT 96 (348)
T ss_dssp HHHHHHGGGGCCCCCCC-------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCh-hHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHH
Confidence 34677788887776555 4999999999877 99999999999999998642 2468899999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhch
Q 020845 111 HVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGS 190 (320)
Q Consensus 111 EliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~ 190 (320)
||||+||||||| |||+ |.+|||+||+|++||+++|||+||+|++.||+++++... ..+++++.+..
T Consensus 97 EliH~asLiHDD--i~D~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~------~~~~~~~~~~~----- 162 (348)
T 3apz_A 97 EMIHVASLLHDD--VLDD-ADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKN------TEVVALLATAV----- 162 (348)
T ss_dssp HHHHHHHHHHHH--C-----------------CCHHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHH-----
T ss_pred HHHHHHHHHhcc--ccCC-CCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHH-----
Confidence 999999999999 8999 789999999999999999999999999999999998642 35566655443
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.+++.||.+|+.+... ...+++.|.+|+++|||+||++||++|++++|++++..+.+++||.++|+||||+|
T Consensus 163 ~~~~~GQ~~dl~~~~~--------~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~D 234 (348)
T 3apz_A 163 EHLVTGETMEITSSTE--------QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLID 234 (348)
T ss_dssp HHHHHHHHHHHTCCHH--------HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--------CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999987642 12689999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHh-hhHHHHHHH
Q 020845 271 RRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 271 D~lD~~~~~~~~-k~~~~Dl~e 291 (320)
|++|++++++++ |++|+||+|
T Consensus 235 D~lD~~gd~~~~GK~~g~Dl~e 256 (348)
T 3apz_A 235 DILDFTGTSASLGKGSLSDIRH 256 (348)
T ss_dssp HHHHHHTTTTCTTCSCCHHHHT
T ss_pred HHhhccCChhhcCCcchhhHhC
Confidence 999999999888 999999998
No 40
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=8.8e-51 Score=392.71 Aligned_cols=255 Identities=11% Similarity=0.047 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc-----cCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC----hHH---Hhh---
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVV-----VKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGH----REQ---AIV--- 105 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~-----~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~~---~~~--- 105 (320)
.++.|++.+...++..+....+ ...+..+.++++|.+ .||||+||+||+++++++|++ .+. +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (362)
T 1yhl_A 3 SMERFLSVYDEVQAFLLDQLQSKYEIDPNRARYLRIMMDTTC-LGGKYFRGMTVVNVAEGFLAVTQHDEATKERILHDAC 81 (362)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHhhc-CCcccHHHHHHHHHHHHhCCCcCCChhhhHHHHHHHH
Confidence 4555555555555555554431 111345888999987 799999999999999998775 222 344
Q ss_pred -HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCCh--hHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 020845 106 -AAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKP--NTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMV 182 (320)
Q Consensus 106 -lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~--~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~ 182 (320)
+|++|||||+||||||| |||+ |.+|||+||+|++||+ ++|||+||+|++.||+++++...+ .....++++++.
T Consensus 82 ~~a~avEliH~asLiHDD--I~D~-s~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~-~~~~~~~~~~~~ 157 (362)
T 1yhl_A 82 VGGWMIEFLQAHYLVEDD--IMDG-SVMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFAD-RPFLKDLLCLFQ 157 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHT-CCEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTT-CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--ccCC-CCCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHH
Confidence 78999999999999999 8999 8899999999999999 589999999999999999987432 113345666665
Q ss_pred HHHHHhchhhhhHHHHHHhhcc-----------cC-CCcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcC-CC
Q 020845 183 EMTRAMGSQGVVEGQYNELQCS-----------QC-DDDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGG-GS 248 (320)
Q Consensus 183 ~~~~a~g~~~~~~GQ~lDl~~~-----------~~-~~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag-~~ 248 (320)
+.. .+++.||++|+.+. .. ..+. ...+++.|++|+++|||+| |++||++|++++| ++
T Consensus 158 ~~~-----~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~ 228 (362)
T 1yhl_A 158 KVD-----YATAVGQMYDVTSMCDSNKLDPEVAQPMTTDF----AEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAA 228 (362)
T ss_dssp HHH-----HHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSC----TTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGG
T ss_pred HHH-----HHHHHHHHHHHHcccccccccccccccccccc----ccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCC
Confidence 544 46899999999987 20 0000 0368999999999999999 9999999999999 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 249 EKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 249 ~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
++..+.+++||.++|++|||+||++|+++++++++++|+||+| ++..++++++.|.+++..
T Consensus 229 ~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~ 299 (362)
T 1yhl_A 229 SVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGD 299 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcC
Confidence 8888999999999999999999999999999998339999988 788888888888887754
No 41
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=6.5e-52 Score=401.29 Aligned_cols=257 Identities=11% Similarity=0.054 Sum_probs=211.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccCC------cccHHhHHHhhccCCCCcchHHHHHHHHHHhCC----ChHHHhh
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVKE------PVEVYEPMRHFVFAAPVNMAPALCVAACELVGG----HREQAIV 105 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~~------~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~----~~~~~~~ 105 (320)
..+.++|..|++++...|++.+++. +... ..++.+++.|.+ .||||+||+||+++++++|+ +.+.+..
T Consensus 22 ~~~~~df~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~l~Y~~-~GGKrlRp~l~~~~~~~~~~~~~~~~e~~~~ 99 (368)
T 2q58_A 22 EYDYTDFINYYDKFKVIVYNVLKKL-PLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYL 99 (368)
T ss_dssp -CCCTTGGGTHHHHHHHHHTTCCCC-CSSCSTTCCHHHHHHHHHHHHT-TCSTTTTTC-CHHHHTTTTCCCSSSHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcc-ccchhhhHHHHHHHHHHHhcCC-CCccchhHHHHHHHHHHhCCCccCCHHHHHH
Confidence 3456788999999988888888653 2211 134677899988 89999999999999999976 3467899
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 020845 106 AAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMT 185 (320)
Q Consensus 106 lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~ 185 (320)
+||||||||+||||||| |||+ +.+|||+||+|++||+++|||+||+|++.||+++.+.... .......+++..++
T Consensus 100 la~aiEliH~asLiHDD--imD~-s~~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~--~~~~~~~~~~~~~~ 174 (368)
T 2q58_A 100 LGWVVEAIQALILIADD--IMDS-GKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSV--FGNDIVMKIQKIYN 174 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--HHTT-CCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHH--HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--cccC-CCCCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccc--cChHHHHHHHHHHH
Confidence 99999999999999999 8999 8899999999999999999999999999999999875321 12334455555555
Q ss_pred HHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 020845 186 RAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGG--GSEKEIELLRRYGFYV 262 (320)
Q Consensus 186 ~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag--~~~~~~~~l~~~G~~l 262 (320)
.++ .+++.||.+|+.+.... ..+.+++.|.+|+++|||.| |.+|+.+|++++| ++++..+.+++||.++
T Consensus 175 ~~~--~~~~~GQ~lDl~~~~~~------~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~l 246 (368)
T 2q58_A 175 ESI--FFTVLGQHLDLSYFDLS------KADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKL 246 (368)
T ss_dssp HHH--HHHHHHHHHHHCSCCCS------SCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHH
T ss_pred HHH--HHhhhhHHHHHHhhhcc------cCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 554 56899999999876531 12357888999999999998 8999999999998 4666788999999999
Q ss_pred HHHHHHHhhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHhccc
Q 020845 263 GMIQGIVSRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVDDNI 311 (320)
Q Consensus 263 G~afQi~DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~~~ 311 (320)
|+||||+||++|+++ -|+.|+||+| ++..++++++.|.+.+.++.
T Consensus 247 G~aFQI~DDiLD~~~----gK~~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~~ 301 (368)
T 2q58_A 247 GEFYQVHNDVSDYLF----NDSNADDICRFKLTWPLQKSFEIADEEMKLKISENYGKNS 301 (368)
T ss_dssp HHHHHHHHHHHHHHS----CCCSSCTTTSCCCCHHHHSSTTTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHhhccc----CCCCCchHhcCCcHHHHHHHHHhCCHHHHHHHHHHhCCCH
Confidence 999999999999875 3899999998 88899999999988876543
No 42
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=1.3e-50 Score=391.98 Aligned_cols=255 Identities=13% Similarity=0.054 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccC----CcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCC----hH---HHhhHHHH
Q 020845 41 KNKSYWTSVHEDIGAHLRQAVVVK----EPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGH----RE---QAIVAAAA 109 (320)
Q Consensus 41 ~~~~~~~~~~~~ie~~L~~~i~~~----~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~----~~---~~~~lAaa 109 (320)
.++.|+......+++.+...++.. .+..+.++++|.+ .||||+||+||+++++++|++ .+ .+..+|++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~y~~-~gGKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~A~a 105 (367)
T 1uby_A 27 EREEFVGFFPQIVRDLTEDGIGHPEVGDAVARLKEVLQYNA-PGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWC 105 (367)
T ss_dssp HHHHHHHTHHHHHHHHHTTTSSCTTTHHHHHHHHHHHHHHS-SSSCCHHHHHHHHHHHHHCCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCchhhHHHHHHHHhhhc-CCCcchhHHHHHHHHHHhCCCccCChhhHHHHHHHHHH
Confidence 456788888888887777665421 2346899999988 799999999999999999873 22 57899999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChh-HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHh
Q 020845 110 LHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPN-TELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAM 188 (320)
Q Consensus 110 vEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~-~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~ 188 (320)
|||||+||||||| |||+ |.+|||+||+|++||++ ++|+.||++++.+|+++++...+ .....++++++.+..
T Consensus 106 iEliH~asLiHDD--ImD~-s~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~--- 178 (367)
T 1uby_A 106 IELFQAASLVADD--IMDQ-SLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQ-RPYYVHLLELFLQTA--- 178 (367)
T ss_dssp HHHHHHHHHHHHH--HHHT-CCEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTT-STTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCc--ccCC-CCCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHH---
Confidence 9999999999999 7999 88999999999999999 89999999999999999986321 113456677776655
Q ss_pred chhhhhHHHHHHhhcccCC-CcccccCCCCCHHHHHHHHHhcHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 020845 189 GSQGVVEGQYNELQCSQCD-DDDRKLNGITDVEMTYETYKKKEGRL-HACGAACGAILGG-GSEKEIELLRRYGFYVGMI 265 (320)
Q Consensus 189 g~~~~~~GQ~lDl~~~~~~-~~~~~~~~~~~~e~y~~ii~~KTg~L-f~~a~~~Gailag-~~~~~~~~l~~~G~~lG~a 265 (320)
.+++.||.+|+.+.... .+. ...+++.|..|+++|||+| |++||++|++++| ++++..+.+++||.++|++
T Consensus 179 --~~~~~GQ~lDl~~~~~~~~d~----~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~a 252 (367)
T 1uby_A 179 --YQTELGQMLDLITAPVSKVDL----SHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEY 252 (367)
T ss_dssp --HHHHHHHHHHHHHSCTTSCCC----TTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccccccccc----ccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 45899999999987521 000 1368999999999999999 9999999999999 8999999999999999999
Q ss_pred HHHHhhhcCCchhHHHhhhHHHHHHH----------hccCCHHHHHHHHHHHhc
Q 020845 266 QGIVSRRLGPTEEIEELKKLAFKLRE----------VNSFNDENAEVIFSLVDD 309 (320)
Q Consensus 266 fQi~DD~lD~~~~~~~~k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~ 309 (320)
|||+||++|+++++++++++|+||+| ++..++++++.|.+.+..
T Consensus 253 FQI~DD~LD~~gd~~~~GK~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~ 306 (367)
T 1uby_A 253 FQIQDDYLDCFGDPALTGAVGTDIQDNKCSWLVVQCLQRVTPEQRQLLEDNYGR 306 (367)
T ss_dssp HHHHHHHHHHHCCTTCSSCCCCCSSSCCCCHHHHHHHHHCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCChhhcCCchhhHHcCCchHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 99999999999999988339999987 788888888888887754
No 43
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.8e-50 Score=381.47 Aligned_cols=200 Identities=15% Similarity=0.133 Sum_probs=174.9
Q ss_pred ccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChh
Q 020845 67 VEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPN 146 (320)
Q Consensus 67 ~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~ 146 (320)
..+.++++|++..||||+||.||+++++++|++.+.+.++|++||+||+||||||| |||+ |.+|||+||+|++||++
T Consensus 11 ~~l~~~~~y~~~~gGKr~Rp~l~l~~~~~~~~~~~~~~~~A~avEliH~asLiHDD--i~D~-s~~RRG~pt~h~~~G~~ 87 (301)
T 2q80_A 11 RILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDD--IEDN-SKLRRGFPVAHSIYGIP 87 (301)
T ss_dssp HHHTHHHHHHTTSSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHT-CSEETTEECHHHHHCHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcc--ccCC-CCCCCCCcchhhccCcH
Confidence 35899999999999999999999999999999888899999999999999999999 8999 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHH
Q 020845 147 TELLVADAMLPFGLELLASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETY 226 (320)
Q Consensus 147 ~AIl~GD~L~~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii 226 (320)
+|||+||+|++.||+++++...+ .+++++.+.. .+++.||.+|+.+.... ...+++.|++|+
T Consensus 88 ~AIl~GD~l~~~a~~~l~~~~~~------~~~~~~~~~~-----~~~~~GQ~~dl~~~~~~-------~~~~~~~y~~~i 149 (301)
T 2q80_A 88 SVINSANYVYFLGLEKVLTLDHP------DAVKLFTRQL-----LELHQGQGLDIYWRDNY-------TCPTEEEYKAMV 149 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCT------THHHHHHHHH-----HHHHHHHHHHHHHHHTT-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHH-----HHHHHHHHHHHHhccCC-------CCCCHHHHHHHH
Confidence 99999999999999999987532 3445544333 46899999999986521 136899999999
Q ss_pred HhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh-hhHHHHHHH
Q 020845 227 KKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEEIEEL-KKLAFKLRE 291 (320)
Q Consensus 227 ~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~~~~~-k~~~~Dl~e 291 (320)
++|||+||+++|++|+++++.++ .+++||.++|++|||+||++|++++++++ |++|+||+|
T Consensus 150 ~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~e 211 (301)
T 2q80_A 150 LQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE 211 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhc
Confidence 99999999999999999999873 58999999999999999999999999888 999999998
No 44
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=5.5e-51 Score=393.62 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=205.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhccCCc-----ccHHhHHHhhccCCCCcchHHHHHHHHHHhCC----ChHHHhhHHHH
Q 020845 39 PNKNKSYWTSVHEDIGAHLRQAVVVKEP-----VEVYEPMRHFVFAAPVNMAPALCVAACELVGG----HREQAIVAAAA 109 (320)
Q Consensus 39 ~~~~~~~~~~~~~~ie~~L~~~i~~~~~-----~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~----~~~~~~~lAaa 109 (320)
..+|..+|+.+.++|.+.++..-....+ ..+.++++|.. .||||+||+||+++++++|+ +.+.+..+|++
T Consensus 25 ~~~f~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~y~~-~GGKrlRp~l~l~~~~~~g~~~~~~~~~~~~~A~a 103 (368)
T 2her_A 25 YTDFINYYDKFKVIVYNVLKKLPLNDEIRKPVIEYYLNCIDYNV-KKGKHIRGKILVLISSLSSAYSNIKRDSIYLLGWV 103 (368)
T ss_dssp CTTGGGTHHHHHHHHHTTCCCCTTSCCTTTTHHHHHHHHHHHHT-TSSTTTTTC-CHHHHTTTTCCCSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHhh-CCCCccchHHHHHHHHHhCCCCcccHHHHHHHHHH
Confidence 3578899999999998888763222223 44566777776 99999999999999999976 34689999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHH---HHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 020845 110 LHVMHAASFIHENLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAML---PFGLELLASSDNPAGNNSGRILRVMVEMTR 186 (320)
Q Consensus 110 vEliH~asLIHDDlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~---~~a~~ll~~~~~~~~~~~~~~~~~i~~~~~ 186 (320)
|||||+||||||| |||+ |.+|||+||+|++||+.+|||+||+|+ +.+|+++++... ... ..+++..+++
T Consensus 104 vEllH~asLIHDD--ImD~-s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~----~~~-~~~~~~~~~~ 175 (368)
T 2her_A 104 VEAIQALILIADD--IMDS-GKFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFG----NDI-VMKIQKIYNE 175 (368)
T ss_dssp HHHHHHHHHHHHH--HHTT-CCEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHC----HHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--cccC-CCCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcC----cCh-HHHHHHHHHH
Confidence 9999999999999 8999 889999999999999999999999999 888998887521 111 3344444444
Q ss_pred HhchhhhhHHHHHHhhcccCCCcccccCCCCCH-HHHHHHHHhcHHHH-HHHHHHHHHHhcCCCHHH--HHHHHHHHHHH
Q 020845 187 AMGSQGVVEGQYNELQCSQCDDDDRKLNGITDV-EMTYETYKKKEGRL-HACGAACGAILGGGSEKE--IELLRRYGFYV 262 (320)
Q Consensus 187 a~g~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~-e~y~~ii~~KTg~L-f~~a~~~Gailag~~~~~--~~~l~~~G~~l 262 (320)
++ .+++.||.+|+.+..... ..+. +.|++|+++|||+| |++||++|++++|++++. .+.+++||.++
T Consensus 176 ~~--~~~~~GQ~lDl~~~~~~~-------~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~l 246 (368)
T 2her_A 176 SI--FFTVLGQHLDLSYFDLSK-------ADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKL 246 (368)
T ss_dssp HH--HHHHHHHHHHHCSCCCSS-------CSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhcccCC-------CCChHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 43 579999999999875210 1233 88999999999999 999999999999998887 88999999999
Q ss_pred HHHHHHHhhhcCCchhHHHh-hhHHHHHHH----------hccCCHHHHHHHHHHHhcc
Q 020845 263 GMIQGIVSRRLGPTEEIEEL-KKLAFKLRE----------VNSFNDENAEVIFSLVDDN 310 (320)
Q Consensus 263 G~afQi~DD~lD~~~~~~~~-k~~~~Dl~e----------l~~~~~~~~~~l~~~~~~~ 310 (320)
|+||||+||++|++ ++ | +|+||+| ++..++++++.|.+.+...
T Consensus 247 G~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~pvi~al~~a~~~~r~~L~~~~~~~ 300 (368)
T 2her_A 247 GEFYQVHNDVSDYL----FNDS-NADDICRFKLTWPLQKSFEIADEEMKLKISENYGKN 300 (368)
T ss_dssp HHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCHHHHSSTTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHH----hcCC-CCChHhCCcccHHHHHHHHhCCHHHHHHHHHHhCCc
Confidence 99999999999998 55 6 9999998 8888999999998887643
No 45
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=2.3e-49 Score=371.84 Aligned_cols=205 Identities=13% Similarity=0.200 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHh
Q 020845 42 NKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHE 121 (320)
Q Consensus 42 ~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHD 121 (320)
.-+||++.++.|++.|++.++...+..+.++++|++. ||||+||.||+++++++|++++.+.++|+++|+||+||||||
T Consensus 11 ~~~~~~~~~~~v~~~l~~~l~~~~~~~l~~~~~y~~~-gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~asLIHD 89 (289)
T 2azj_A 11 IIEFWLEAKATIDRLIEQFLNSNRDWDLVDISSYILK-DGKRFRGTLNMFFTVALGGDIKDSYGGALAIEILHSASLALC 89 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTTHHHHHHHHHS-CCCCHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999998865334469999999998 999999999999999999988889999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHH-HhcCCCCCCChHHHHHHHHHHHHHhchhhhhHHHHHH
Q 020845 122 NLPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL-ASSDNPAGNNSGRILRVMVEMTRAMGSQGVVEGQYNE 200 (320)
Q Consensus 122 DlPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll-~~~~~~~~~~~~~~~~~i~~~~~a~g~~~~~~GQ~lD 200 (320)
| |||+ +++|||+||+|++||+++|||+||+|++.||+++ ++.. ..+++++.+ ++ .+++.||.+|
T Consensus 90 D--i~D~-s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-------~~~~~~~~~---~~--~~~~~GQ~~d 154 (289)
T 2azj_A 90 D--IVDL-DATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-------DDALNTSIE---LW--KDTSVGALRD 154 (289)
T ss_dssp H--HHTT-CCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHH---HH--HHHHHHHHHT
T ss_pred C--CCCC-CCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-------HHHHHHHHH---HH--HHHHHHHHHH
Confidence 9 7999 7899999999999999999999999999999999 8863 244555544 33 5699999999
Q ss_pred hhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 020845 201 LQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRRLGPTEE 278 (320)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~lD~~~~ 278 (320)
+.+ ++.|++|+++|||+||++||++|++++ ++++..+.+++||.++|++|||+||++|++++
T Consensus 155 l~~---------------~~~y~~~i~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~ 216 (289)
T 2azj_A 155 MYD---------------NSDYIRTIELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK 216 (289)
T ss_dssp TTT---------------TSCHHHHHHHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred Hhh---------------HHHHHHHHHcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 874 234778999999999999999999999 88888999999999999999999999999875
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=81.62 E-value=30 Score=31.28 Aligned_cols=72 Identities=7% Similarity=-0.002 Sum_probs=47.3
Q ss_pred hhhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 020845 191 QGVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVS 270 (320)
Q Consensus 191 ~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~D 270 (320)
.+++.|...|+.... ..+.+++..-+.+-.|....+.+ .+++..+++ ...++.++|.|+|+.|
T Consensus 107 ~~li~g~~~Dl~~~~----------~~t~~dL~~Y~~~vAg~VG~m~~---~i~g~~~~~----~~~~A~~lG~AlQltN 169 (294)
T 4hd1_A 107 LRLIEANRRDQRKHT----------YDTWEDLRDYCRYSADPVGRLVL---GIFGCLDDE----RARLSDATCTALQVAN 169 (294)
T ss_dssp HHHHHHHHHHHHCSB----------CCSHHHHHHHHHHHTHHHHHHHH---HHTTCCSHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC----------CCCHHHHHHHHHhccchHHHHHH---HHhCCCCHH----HHHHHHHHHHHHHHHH
Confidence 457899999987654 25778876555544444444433 345544543 4467889999999999
Q ss_pred hhcCCchhH
Q 020845 271 RRLGPTEEI 279 (320)
Q Consensus 271 D~lD~~~~~ 279 (320)
=+.|+..|.
T Consensus 170 ilRDv~eD~ 178 (294)
T 4hd1_A 170 HMQDIDRDL 178 (294)
T ss_dssp HHHTHHHHH
T ss_pred HHHhchhhh
Confidence 777776653
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=74.69 E-value=21 Score=33.26 Aligned_cols=75 Identities=8% Similarity=-0.167 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 020845 193 VVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSRR 272 (320)
Q Consensus 193 ~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD~ 272 (320)
+..|-..|+... ..+.+++..-+.+-.|....+.+.+-..-...++ ........+.++|.|+|+.|=+
T Consensus 123 m~~gm~~dl~~~-----------~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~-~~~~~~~~A~~lG~AlQltNil 190 (343)
T 3vj8_A 123 MGIGMAEFLDKH-----------VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDP-LVGEDTERANSMGLFLQKTNII 190 (343)
T ss_dssp HHHHHHHGGGCC-----------CCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCH-HHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-----------CCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccc-hhhhHHHHHHHHHHHHHHHHHH
Confidence 567777777522 1578888766666666666666555443322223 2345667899999999999977
Q ss_pred cCCchhH
Q 020845 273 LGPTEEI 279 (320)
Q Consensus 273 lD~~~~~ 279 (320)
.|+..|.
T Consensus 191 RDv~eD~ 197 (343)
T 3vj8_A 191 RDYLEDQ 197 (343)
T ss_dssp HTHHHHH
T ss_pred HHhHHHH
Confidence 7776553
No 48
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=65.76 E-value=14 Score=33.53 Aligned_cols=72 Identities=8% Similarity=0.069 Sum_probs=47.6
Q ss_pred hhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 020845 192 GVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGAACGAILGGGSEKEIELLRRYGFYVGMIQGIVSR 271 (320)
Q Consensus 192 ~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~~~Gailag~~~~~~~~l~~~G~~lG~afQi~DD 271 (320)
+++.|...|+.... ..|.+++..-+++-.|....+.+. +++..+. +.....+.++|.|+|+.|=
T Consensus 112 ~li~g~~~Dl~~~~----------~~t~~dL~~Yc~~vAg~VG~l~~~---l~g~~~~---~~~~~~A~~lG~AlQltNi 175 (293)
T 3acx_A 112 NLIDTVYKDQHFTM----------FETDAELFGYCYGVAGTVGEVLTP---ILSDHET---HQTYDVARRLGESLQLINI 175 (293)
T ss_dssp HHHHHHHHHTTCCC----------CSSHHHHHHHHHHHTHHHHHHHHH---HHCSSCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC----------CCCHHHHHHHHHHhhHHHHHHHHH---HhCCCCc---HHHHHHHHHHHHHHHHHHH
Confidence 46788888887543 257888776666655555555443 3333331 2356799999999999997
Q ss_pred hcCCchhH
Q 020845 272 RLGPTEEI 279 (320)
Q Consensus 272 ~lD~~~~~ 279 (320)
+.|+..|.
T Consensus 176 lRDv~eD~ 183 (293)
T 3acx_A 176 LRDVGEDF 183 (293)
T ss_dssp HHCHHHHH
T ss_pred HHHHHHHH
Confidence 77776553
No 49
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=56.98 E-value=34 Score=31.45 Aligned_cols=84 Identities=7% Similarity=-0.067 Sum_probs=54.9
Q ss_pred CCCcchHHHHHHHHHHhC--CChHHHhhHHHHHHHHHHHHHHHhCCCCCCC-----------CCCCCCCCCcccccCChh
Q 020845 80 APVNMAPALCVAACELVG--GHREQAIVAAAALHVMHAASFIHENLPLSDR-----------TSLIPKSKPTMYHAFKPN 146 (320)
Q Consensus 80 gGKrlRp~L~l~~~~~~g--~~~~~~~~lAaavEliH~asLIHDDlPi~D~-----------Ds~~RRG~pt~h~~~G~~ 146 (320)
.|..++....+ +.+.| .+++....+...-+.+=.|+=|.|| +.|- -++.+.|++|+-..+|..
T Consensus 189 Tg~L~~~a~~~--a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DD--ilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~ 264 (313)
T 3lom_A 189 TGKLILACFEM--VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDD--YLDLYAPTQILGKGRSSDQANQKTTFATLFNKQ 264 (313)
T ss_dssp THHHHHHHHHH--HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCC---------------CCCHHHHSCHH
T ss_pred cHHHHHHHHHH--HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHhhCCCCcchhhcCCccHHHHHHHH
Confidence 44555544433 33334 4555566667777778889999999 6662 135688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 020845 147 TELLVADAMLPFGLELLASSD 167 (320)
Q Consensus 147 ~AIl~GD~L~~~a~~ll~~~~ 167 (320)
.|--...-+...|.+.|...+
T Consensus 265 ~a~~~a~~~~~~A~~~L~~l~ 285 (313)
T 3lom_A 265 QLEEEIAVHYQIAMDSLRLFG 285 (313)
T ss_dssp HHHHHHHHHHHHHHHTTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 888887888888888887664
No 50
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=53.18 E-value=43 Score=30.65 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=54.5
Q ss_pred CCCcchHHHHHHHHHHhCC-ChHHHhhHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCCCCcccccCChh
Q 020845 80 APVNMAPALCVAACELVGG-HREQAIVAAAALHVMHAASFIHENLPLSD------------RTSLIPKSKPTMYHAFKPN 146 (320)
Q Consensus 80 gGKrlRp~L~l~~~~~~g~-~~~~~~~lAaavEliH~asLIHDDlPi~D------------~Ds~~RRG~pt~h~~~G~~ 146 (320)
.|..++.. |.+++.+.|. +++....+...-+.+=.|+=|.|| +.| . ++.+.|++|+-..+|..
T Consensus 182 Tg~L~~~~-~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DD--ilD~~~~~~~~GK~~g-~Dl~egK~T~p~l~~l~ 257 (304)
T 3lsn_A 182 TGALIEAS-VILGALASGRAEKGELKALQTYAQAIGLAFQVQDD--ILDVESDTATLGKRQG-ADIARDKPTYPALLGLA 257 (304)
T ss_dssp THHHHHHH-HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC-------------CCHHHHHCHH
T ss_pred hHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCChHHhCCCcc-cHHhcCCccHHHHHHHH
Confidence 34444422 2333334455 555556667777778889999999 776 3 56799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 020845 147 TELLVADAMLPFGLELLASSD 167 (320)
Q Consensus 147 ~AIl~GD~L~~~a~~ll~~~~ 167 (320)
.|--...-++..|.+.|...+
T Consensus 258 ~a~~~a~~~~~~A~~~L~~l~ 278 (304)
T 3lsn_A 258 AAKEYALELRDQALHALRPFD 278 (304)
T ss_dssp HHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 888888888888888888764
No 51
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=51.07 E-value=83 Score=28.56 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=50.1
Q ss_pred HHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCC------------CCCCCCCCCCcccccCChhHHHHHHHHHHHHHH
Q 020845 93 CELVGGHREQAIVAAAALHVMHAASFIHENLPLSD------------RTSLIPKSKPTMYHAFKPNTELLVADAMLPFGL 160 (320)
Q Consensus 93 ~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D------------~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~ 160 (320)
+.+.|.+++....+...-+.+=.|+=|.|| +.| . ++.+.|++|+-..+|...|--...-+...|.
T Consensus 190 a~lag~~~~~~~~l~~~g~~lG~aFQI~DD--ilD~~~d~~~~GK~~g-~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~ 266 (301)
T 1rtr_A 190 ADIANVDDTTKEHLESYSYHLGMMFQIKDD--LLDCYGDEAKLGKKVG-SDLENNKSTYVSLLGKDGAEDKLTYHRDAAV 266 (301)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHhCCCcc-hHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666677777778889999999 676 3 4578899999888888888878888888899
Q ss_pred HHHHhcC
Q 020845 161 ELLASSD 167 (320)
Q Consensus 161 ~ll~~~~ 167 (320)
+.|...+
T Consensus 267 ~~L~~l~ 273 (301)
T 1rtr_A 267 DELTQID 273 (301)
T ss_dssp HHHHTSC
T ss_pred HHHHhCC
Confidence 9998875
No 52
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=50.79 E-value=41 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.028 Sum_probs=49.2
Q ss_pred CChHHHhhHHHHHHHHHHHHHHHhCCCCCCC-----------CCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhc
Q 020845 98 GHREQAIVAAAALHVMHAASFIHENLPLSDR-----------TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASS 166 (320)
Q Consensus 98 ~~~~~~~~lAaavEliH~asLIHDDlPi~D~-----------Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~ 166 (320)
.+.+....+...-+.+=.|+=|.|| +.|- -++.+.|++|+-..+|...|--...-+...|.+.|...
T Consensus 199 a~~~~~~~l~~~g~~lGlAFQI~DD--iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l 276 (317)
T 4f62_A 199 VKPEQLAKLDAYAHAIGLAFQVQDD--IIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEF 276 (317)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH--HHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555556666777778889999999 6762 14568889999888998888888888888888888877
Q ss_pred C
Q 020845 167 D 167 (320)
Q Consensus 167 ~ 167 (320)
+
T Consensus 277 ~ 277 (317)
T 4f62_A 277 G 277 (317)
T ss_dssp G
T ss_pred c
Confidence 4
No 53
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=49.52 E-value=47 Score=30.72 Aligned_cols=72 Identities=13% Similarity=-0.009 Sum_probs=49.6
Q ss_pred HhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHHHHHHHHHHHHHHHHH
Q 020845 95 LVGGHREQAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTELLVADAMLPFGLELL 163 (320)
Q Consensus 95 ~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll 163 (320)
+.|.+++....+...-+.+=.|+=|.|| +.|- | ++.+.|++|+-..+|...|--...-+...|.+.|
T Consensus 225 laga~~~~~~~l~~~g~~lGlAFQI~DD--iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L 302 (324)
T 3uca_A 225 LAEASEGDIKKLEGFGYKLGLAFQIKDD--ILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEIL 302 (324)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666566666777778889999999 6652 1 3468889999999999988888888889999999
Q ss_pred HhcCC
Q 020845 164 ASSDN 168 (320)
Q Consensus 164 ~~~~~ 168 (320)
...+.
T Consensus 303 ~~l~~ 307 (324)
T 3uca_A 303 SSIKG 307 (324)
T ss_dssp HTSSS
T ss_pred HhCCC
Confidence 88753
No 54
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2 PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens} SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Probab=47.84 E-value=86 Score=28.79 Aligned_cols=86 Identities=9% Similarity=0.013 Sum_probs=60.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHHh-CCChHHHhh
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACELV-GGHREQAIV 105 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~~-g~~~~~~~~ 105 (320)
..-+..|+.+.+++.+++++.+.+.++......+.|...|+..+=|-+.| ..++.+.|..- |. -.....
T Consensus 80 RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgi-l~~~d~ 158 (303)
T 2ixm_A 80 RFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGV-LRVDDQ 158 (303)
T ss_dssp SSSCTHHHHHHHHHHHHHHHHHHTTSCGGGGGGHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTS-SCGGGH
T ss_pred CcCChHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhCcCCCccCccCcHHHHHHHHHHHHHHHcCC-Cccchh
Confidence 34445689999999999999999988765445688888999988898888 46666666442 32 112234
Q ss_pred HHHHHHHHHHHHHHHhC
Q 020845 106 AAAALHVMHAASFIHEN 122 (320)
Q Consensus 106 lAaavEliH~asLIHDD 122 (320)
.|.++-++.-+--+.--
T Consensus 159 ~a~vL~vF~~Yl~l~R~ 175 (303)
T 2ixm_A 159 IAIVFKVFNRYLEVMRK 175 (303)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 55666666666666655
No 55
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase activator prolyl isomerase PTPA, isomerase; 2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Probab=41.39 E-value=1.3e+02 Score=27.60 Aligned_cols=87 Identities=9% Similarity=-0.061 Sum_probs=61.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHHh-CCChHHHhh
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACELV-GGHREQAIV 105 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~~-g~~~~~~~~ 105 (320)
..-+..|+.+.+++.+..++.+.+.++......+.|...|+..+=|-+.| ..++.+.|..- |.=......
T Consensus 79 RFGN~AfR~w~~~l~~~~~~ll~~~lp~~~~~~~~EL~~Yl~~SFGn~tRiDYGTGHEL~Fl~fL~cL~klgil~~~~D~ 158 (310)
T 2ixn_A 79 RFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDESWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDS 158 (310)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTSSCBTTTTEECHHHHHHHHHHHHHHHHTTSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhCcCCCccCccCchHHHHHHHHHHHHHHcCCCCcccch
Confidence 34445689999999999999999998755445688888999988899988 46666666442 332112234
Q ss_pred HHHHHHHHHHHHHHHhC
Q 020845 106 AAAALHVMHAASFIHEN 122 (320)
Q Consensus 106 lAaavEliH~asLIHDD 122 (320)
.|.++-++.-+--+.--
T Consensus 159 ~a~vL~vF~~Yl~l~R~ 175 (310)
T 2ixn_A 159 TNLVLKVFIEYLKIMRI 175 (310)
T ss_dssp HHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666777777666666
No 56
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=40.16 E-value=1.9e+02 Score=26.06 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=44.4
Q ss_pred HHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC-----CCCCCCCCCcccccCC--------hhHHHHHHHHHHHHHH
Q 020845 94 ELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR-----TSLIPKSKPTMYHAFK--------PNTELLVADAMLPFGL 160 (320)
Q Consensus 94 ~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~-----Ds~~RRG~pt~h~~~G--------~~~AIl~GD~L~~~a~ 160 (320)
.+.|.+++....+...-+.+=.|+=|.|| +.|= ..+.+.|++|+-..|+ ...|--...-+...|.
T Consensus 180 ~lag~~~~~~~~l~~~g~~lGlaFQI~DD--ilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~ 257 (295)
T 3ipi_A 180 YTGGAEEELAERFSHFGNALGTAYQIVDD--ILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAK 257 (295)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 34455665555666666777789999999 7772 0335778888877776 5555556666677777
Q ss_pred HHHHhcC
Q 020845 161 ELLASSD 167 (320)
Q Consensus 161 ~ll~~~~ 167 (320)
+.|...+
T Consensus 258 ~~L~~lp 264 (295)
T 3ipi_A 258 ETLETFR 264 (295)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
Confidence 7777664
No 57
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=38.71 E-value=66 Score=29.69 Aligned_cols=68 Identities=19% Similarity=0.036 Sum_probs=47.8
Q ss_pred CChHHHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhc
Q 020845 98 GHREQAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASS 166 (320)
Q Consensus 98 ~~~~~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~ 166 (320)
.+++....+...-+.+=.|+=|.|| +.|- | ++.+.|++|+-..||...|--...-+...|.+.|...
T Consensus 206 a~~~~~~~l~~~g~~lGlAFQI~DD--iLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l 283 (324)
T 3ts7_A 206 LPAEQFDRLDHYAKCIGLAFQIQDD--ILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGF 283 (324)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH--HHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555556666677778889999999 6662 1 3568899999999999888888788888888888766
Q ss_pred C
Q 020845 167 D 167 (320)
Q Consensus 167 ~ 167 (320)
+
T Consensus 284 ~ 284 (324)
T 3ts7_A 284 G 284 (324)
T ss_dssp C
T ss_pred C
Confidence 4
No 58
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=38.22 E-value=81 Score=28.76 Aligned_cols=71 Identities=17% Similarity=-0.004 Sum_probs=47.3
Q ss_pred HHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC-----------CCCCCCCCCcccccCChhHHHHHHHHHHHHHHHH
Q 020845 94 ELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR-----------TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162 (320)
Q Consensus 94 ~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~-----------Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~l 162 (320)
.+.|.+.+....+...-+.+=.|+=|.|| +.|- -++.+.|++|+-..+|...|--.-.-+...|.+.
T Consensus 199 ~laga~~~~~~~l~~~g~~lGlaFQI~DD--ilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~ 276 (302)
T 3p8l_A 199 VLANQTEEVIGLLTQFAHHYGLAFQIRDD--LLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAV 276 (302)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHH--HHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666667777778889999999 6663 1346778888888888888877777777788888
Q ss_pred HHhc
Q 020845 163 LASS 166 (320)
Q Consensus 163 l~~~ 166 (320)
|...
T Consensus 277 L~~~ 280 (302)
T 3p8l_A 277 LEKI 280 (302)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8776
No 59
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=36.37 E-value=97 Score=28.11 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=50.0
Q ss_pred CCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHH
Q 020845 80 APVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTE 148 (320)
Q Consensus 80 gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~A 148 (320)
.|..++.. |.+++.+.|.+.+ .+...-+.+=.|+=|.|| +.|- | ++.+.|++|+-..+|...|
T Consensus 179 Tg~L~~~~-~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD--ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a 252 (297)
T 3m0g_A 179 TGALISFA-AQAGAILAGADRG---PLTAYATALGLAFQIADD--ILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGA 252 (297)
T ss_dssp THHHHHHH-HHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTT--CC---------------------CCHHHHHCSSHH
T ss_pred hHHHHHHH-HHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCCccchhhcCCccHHHHHHHHHH
Confidence 34444432 2233334455554 455555667778999999 7773 1 3568889999889998888
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 020845 149 LLVADAMLPFGLELLASSD 167 (320)
Q Consensus 149 Il~GD~L~~~a~~ll~~~~ 167 (320)
--...-++..|.+.|...+
T Consensus 253 ~~~~~~~~~~A~~~L~~~~ 271 (297)
T 3m0g_A 253 KSRAADLVAEAEAALAPYG 271 (297)
T ss_dssp HHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888774
No 60
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=35.09 E-value=44 Score=30.53 Aligned_cols=67 Identities=15% Similarity=-0.008 Sum_probs=46.9
Q ss_pred ChHHHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcC
Q 020845 99 HREQAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167 (320)
Q Consensus 99 ~~~~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~ 167 (320)
+++....+...-+.+=.|+=|.|| +.|- | ++.+.|++|+-..||...|--...-+...|.+.|...+
T Consensus 207 ~~~~~~~l~~~g~~lG~aFQI~DD--ilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 207 GRAMLPHLDRYAEAVGLAFQVQDD--ILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHH--HHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344445566666777788999999 6662 1 34678889998889988888888888889999998775
No 61
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=34.76 E-value=42 Score=31.17 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=47.7
Q ss_pred HHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC--C---------CCCCCCCCcccccCChhHHHHHHHHHHHHHHHH
Q 020845 94 ELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR--T---------SLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162 (320)
Q Consensus 94 ~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~--D---------s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~l 162 (320)
.+.|.+++....+...-+.+=.|+=|.|| +.|- | ++.+.|++|+-..||...+--..+-+...|.+.
T Consensus 235 ~laga~~~~~~~l~~~g~~lGlAFQI~DD--iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~ 312 (335)
T 2h8o_A 235 IIAGSNQAERQRLRLFGEKIGLSFQLADD--LLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASEL 312 (335)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666677777778889999999 6662 1 345778888888888777777777777777777
Q ss_pred HHhcC
Q 020845 163 LASSD 167 (320)
Q Consensus 163 l~~~~ 167 (320)
|...+
T Consensus 313 L~~l~ 317 (335)
T 2h8o_A 313 LAPYG 317 (335)
T ss_dssp TGGGG
T ss_pred HHhCc
Confidence 77653
No 62
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=33.31 E-value=71 Score=29.29 Aligned_cols=71 Identities=13% Similarity=-0.098 Sum_probs=49.4
Q ss_pred HHhCCChHHHhhHHHHHHHHHHHHHHHhCCCCCCC-----------CCCCCCCCCcccccCChhHHHHHHHHHHHHHHHH
Q 020845 94 ELVGGHREQAIVAAAALHVMHAASFIHENLPLSDR-----------TSLIPKSKPTMYHAFKPNTELLVADAMLPFGLEL 162 (320)
Q Consensus 94 ~~~g~~~~~~~~lAaavEliH~asLIHDDlPi~D~-----------Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~l 162 (320)
.+.|.+++....+...-+.+=.|+=|.|| +.|- -++.+.|++|+-..||...|--.-.-++..|.+.
T Consensus 198 ~laga~~~~~~~l~~~g~~lGlaFQI~DD--iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 198 ILGQAPEAQWPAYLQFADAFGLAFQIYDD--ILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHTTCCGGGHHHHHHHHHHHHHHHHHHHH--HHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33455666566666677778889999999 6662 1456888889888888877766666677777777
Q ss_pred HHhc
Q 020845 163 LASS 166 (320)
Q Consensus 163 l~~~ 166 (320)
+...
T Consensus 276 l~~~ 279 (309)
T 3pde_A 276 LQGL 279 (309)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 7663
No 63
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=32.90 E-value=2e+02 Score=23.40 Aligned_cols=87 Identities=7% Similarity=0.090 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcchHHHHHHHHHHhCCChHHHhhHHHHHHHHHHHHHHHhC
Q 020845 43 KSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMAPALCVAACELVGGHREQAIVAAAALHVMHAASFIHEN 122 (320)
Q Consensus 43 ~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~lAaavEliH~asLIHDD 122 (320)
+.+++.++.+|++.++..-+-. +..+.++ ++.++.. +..+++ + +.|+ =-|-+.--+.||
T Consensus 5 ~~tla~Lk~QIe~kL~~~h~Yl-~i~In~~--------------L~~Lld~--~~ipe~-~-k~ac--laIDTsmrv~d~ 63 (147)
T 3aqb_A 5 MRYLHKIELELNRLTSRYPFFK-KIAFDAE--------------IIKLVDD--LNVDEN-V-KCAI--VAIDTSMRMQDF 63 (147)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCC-CCCCCHH--------------HHHHHHT--CSSCHH-H-HHHH--HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCChHH-HHhcCcH--------------HHHHhhc--cCCChH-H-hhhe--eEeccHHHhhcc
Confidence 4677889999998887422111 1112222 3333322 333332 2 2222 335566677777
Q ss_pred CCCCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHHHHhcC
Q 020845 123 LPLSDRTSLIPKSKPTMYHAFKPNTELLVADAMLPFGLELLASSD 167 (320)
Q Consensus 123 lPi~D~Ds~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~ll~~~~ 167 (320)
|-|+ . ...-||+||++-+.-|.+|++..
T Consensus 64 --i~~n----~-----------K~riVLaGD~~Sa~fY~lLa~~~ 91 (147)
T 3aqb_A 64 --INED----N-----------KDSFVLSTDVLSALFYKYLSQPF 91 (147)
T ss_dssp --CCTT----T-----------HHHHHHHHHHHHHHHHHHTBTTB
T ss_pred --cccC----C-----------ccceEeehHHHHHHHHHHHcChh
Confidence 4222 1 12255999999999999999764
No 64
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase, PP2A phosphatase activator prolyl isomerase PTPA, nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP: a.268.1.1 PDB: 2ixp_A*
Probab=28.08 E-value=91 Score=28.91 Aligned_cols=85 Identities=9% Similarity=-0.037 Sum_probs=54.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhccCCcccHHhHHHhhccCCCCcch---------HHHHHHHHHH-hCCChHHHhh
Q 020845 36 MSTPNKNKSYWTSVHEDIGAHLRQAVVVKEPVEVYEPMRHFVFAAPVNMA---------PALCVAACEL-VGGHREQAIV 105 (320)
Q Consensus 36 ~~~~~~~~~~~~~~~~~ie~~L~~~i~~~~~~~l~e~~~y~~~~gGKrlR---------p~L~l~~~~~-~g~~~~~~~~ 105 (320)
..-+..|+.+.+++.+++.+.+.+.++......+.|...|+..+=|-+.| ..++.+.|.. +|.=.+ ..
T Consensus 92 RFGN~AfR~w~~~l~~~~~~ll~~~l~~~~~~~~~EL~~Yl~~SFGn~tRIDYGTGHEL~Fl~fL~cL~klgil~~--d~ 169 (323)
T 2ixo_A 92 RYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFPH--HR 169 (323)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHSCGGGGGGHHHHHHHHHTSSCCTTTCEECHHHHHHHHHHHHHHHHTTCSTT--CC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHhccCCCcccccCcHHHHHHHHHHHHHHHcCCCcc--cc
Confidence 34445689999999999999999998765444578888898888888877 3555555533 232111 22
Q ss_pred HHHHHHHHHHHHHHHhC
Q 020845 106 AAAALHVMHAASFIHEN 122 (320)
Q Consensus 106 lAaavEliH~asLIHDD 122 (320)
.|.++-++.-+--+.--
T Consensus 170 ~a~vL~vF~~Yl~l~R~ 186 (323)
T 2ixo_A 170 GADVFLLFNKYYTIMRR 186 (323)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHH
Confidence 34445555555444444
No 65
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=21.21 E-value=4.8e+02 Score=23.92 Aligned_cols=77 Identities=10% Similarity=-0.071 Sum_probs=44.3
Q ss_pred hhhHHHHHHhhcccCCCcccccCCCCCHHHHHHHHHhcHHHHHHHHH-HHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH
Q 020845 192 GVVEGQYNELQCSQCDDDDRKLNGITDVEMTYETYKKKEGRLHACGA-ACGAILGGGSEKEI--ELLRRYGFYVGMIQGI 268 (320)
Q Consensus 192 ~~~~GQ~lDl~~~~~~~~~~~~~~~~~~e~y~~ii~~KTg~Lf~~a~-~~Gailag~~~~~~--~~l~~~G~~lG~afQi 268 (320)
.++.+...+..|...+ ..++.++|.++-..-+|..+.+.+ .++. --..+++.. ..+.++-...+.+.-+
T Consensus 188 ~~~~a~l~Ea~w~~~g-------~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~~~i~rL 259 (382)
T 3kb9_A 188 TVIEAYDREFHNRTRG-------IVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLSQEFAAW 259 (382)
T ss_dssp HHHHHHHHHHHHHHHT-------CCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-------CCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHHHHHHHH
Confidence 4567777776665421 126889998764444443332221 1221 112334433 2566777888889999
Q ss_pred HhhhcCCc
Q 020845 269 VSRRLGPT 276 (320)
Q Consensus 269 ~DD~lD~~ 276 (320)
.||+..+.
T Consensus 260 ~NDi~S~~ 267 (382)
T 3kb9_A 260 YNDLCSLP 267 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997765
Done!