Query 020846
Match_columns 320
No_of_seqs 428 out of 2511
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 2.6E-30 5.7E-35 244.7 11.4 108 56-170 24-135 (493)
2 KOG2640 Thioredoxin [Function 99.9 1.3E-24 2.9E-29 192.0 9.1 282 26-316 24-318 (319)
3 KOG0191 Thioredoxin/protein di 99.9 3.1E-24 6.6E-29 203.8 12.1 182 77-280 43-254 (383)
4 cd03006 PDI_a_EFP1_N PDIa fami 99.9 8.6E-22 1.9E-26 154.6 13.0 104 56-163 8-113 (113)
5 KOG0910 Thioredoxin-like prote 99.9 9.8E-22 2.1E-26 157.8 9.8 104 59-168 45-149 (150)
6 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.9E-21 1.1E-25 147.7 10.9 96 60-162 4-100 (101)
7 PF00085 Thioredoxin: Thioredo 99.9 2.4E-20 5.1E-25 143.6 14.7 102 59-166 1-103 (103)
8 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 9.1E-21 2E-25 146.9 11.1 99 59-163 3-104 (104)
9 cd02999 PDI_a_ERp44_like PDIa 99.8 1.9E-20 4E-25 144.3 11.6 90 72-163 9-100 (100)
10 TIGR02187 GlrX_arch Glutaredox 99.8 3.1E-20 6.8E-25 162.8 11.2 156 80-243 18-197 (215)
11 cd02996 PDI_a_ERp44 PDIa famil 99.8 5.6E-20 1.2E-24 143.6 10.9 98 59-163 3-108 (108)
12 PTZ00443 Thioredoxin domain-co 99.8 2.8E-19 6.2E-24 156.3 14.8 111 57-169 30-141 (224)
13 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.3E-19 2.7E-24 141.5 11.2 100 59-164 2-109 (109)
14 cd03065 PDI_b_Calsequestrin_N 99.8 4E-19 8.6E-24 140.6 12.4 104 57-167 9-119 (120)
15 PTZ00102 disulphide isomerase; 99.8 7.3E-19 1.6E-23 171.6 16.0 112 57-176 32-147 (477)
16 cd02956 ybbN ybbN protein fami 99.8 4.7E-19 1E-23 135.2 11.3 86 79-164 10-96 (96)
17 cd02994 PDI_a_TMX PDIa family, 99.8 6.6E-19 1.4E-23 135.7 12.0 97 59-165 3-101 (101)
18 KOG0190 Protein disulfide isom 99.8 1.8E-19 4E-24 171.2 9.9 127 34-168 336-474 (493)
19 PRK09381 trxA thioredoxin; Pro 99.8 1.6E-18 3.4E-23 135.5 13.5 104 58-167 4-108 (109)
20 PHA02278 thioredoxin-like prot 99.8 8.8E-19 1.9E-23 135.3 11.8 84 79-162 12-100 (103)
21 COG3118 Thioredoxin domain-con 99.8 4E-19 8.6E-24 157.3 11.0 106 61-169 25-132 (304)
22 cd02963 TRX_DnaJ TRX domain, D 99.8 9.4E-19 2E-23 137.4 11.0 87 79-165 22-110 (111)
23 cd03001 PDI_a_P5 PDIa family, 99.8 1.4E-18 2.9E-23 134.1 11.6 98 60-163 3-102 (103)
24 cd02954 DIM1 Dim1 family; Dim1 99.8 9.8E-19 2.1E-23 136.4 10.3 77 79-155 12-89 (114)
25 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.1E-18 2.4E-23 134.3 10.6 96 60-163 3-102 (102)
26 KOG4277 Uncharacterized conser 99.8 5.4E-19 1.2E-23 155.3 9.2 116 79-194 41-160 (468)
27 PRK10996 thioredoxin 2; Provis 99.8 6.5E-18 1.4E-22 138.0 13.7 102 61-167 37-139 (139)
28 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3E-18 6.5E-23 132.2 10.7 99 58-163 1-104 (104)
29 cd03000 PDI_a_TMX3 PDIa family 99.8 5E-18 1.1E-22 131.6 11.4 88 79-166 13-103 (104)
30 cd02993 PDI_a_APS_reductase PD 99.8 4.1E-18 9E-23 133.3 10.6 101 59-163 3-109 (109)
31 cd02948 TRX_NDPK TRX domain, T 99.8 6.6E-18 1.4E-22 130.6 11.5 90 69-165 10-101 (102)
32 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.6E-18 5.5E-23 134.5 9.2 96 62-166 4-115 (116)
33 TIGR01126 pdi_dom protein disu 99.8 6E-18 1.3E-22 130.0 10.6 94 69-167 6-102 (102)
34 cd02997 PDI_a_PDIR PDIa family 99.8 7.3E-18 1.6E-22 130.1 11.1 97 60-163 3-104 (104)
35 cd02985 TRX_CDSP32 TRX family, 99.8 1.7E-17 3.7E-22 128.5 12.5 84 80-165 14-101 (103)
36 PTZ00102 disulphide isomerase; 99.8 1.8E-17 3.9E-22 161.8 15.5 134 31-170 325-468 (477)
37 TIGR01130 ER_PDI_fam protein d 99.7 1.4E-17 3E-22 161.5 12.8 149 59-225 3-157 (462)
38 KOG0907 Thioredoxin [Posttrans 99.7 2.8E-17 6.1E-22 127.1 11.7 86 78-165 18-104 (106)
39 cd02965 HyaE HyaE family; HyaE 99.7 3.2E-17 6.9E-22 127.1 10.9 95 60-161 13-110 (111)
40 cd02962 TMX2 TMX2 family; comp 99.7 8.9E-17 1.9E-21 132.5 14.2 91 57-152 28-126 (152)
41 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.6E-17 5.6E-22 127.1 10.3 98 60-163 3-105 (105)
42 cd02950 TxlA TRX-like protein 99.7 1.1E-16 2.3E-21 131.2 12.9 102 64-170 8-113 (142)
43 PLN00410 U5 snRNP protein, DIM 99.7 1.2E-16 2.5E-21 129.5 12.7 97 69-168 14-121 (142)
44 TIGR01068 thioredoxin thioredo 99.7 9.4E-17 2E-21 122.9 11.5 91 77-167 10-101 (101)
45 cd02949 TRX_NTR TRX domain, no 99.7 2.4E-16 5.2E-21 120.6 11.6 89 76-164 8-97 (97)
46 cd02957 Phd_like Phosducin (Ph 99.7 2.7E-16 5.8E-21 123.8 11.6 89 57-153 4-95 (113)
47 cd02989 Phd_like_TxnDC9 Phosdu 99.7 4.3E-16 9.3E-21 122.6 12.5 87 59-153 6-94 (113)
48 cd02961 PDI_a_family Protein D 99.7 3.1E-16 6.7E-21 119.4 9.7 90 69-163 8-101 (101)
49 KOG0191 Thioredoxin/protein di 99.7 2.7E-16 5.7E-21 149.5 11.1 171 61-243 146-355 (383)
50 cd02953 DsbDgamma DsbD gamma f 99.7 5.1E-16 1.1E-20 120.2 9.0 87 78-164 8-104 (104)
51 PTZ00051 thioredoxin; Provisio 99.7 1.5E-15 3.2E-20 116.1 11.2 85 69-160 11-96 (98)
52 cd02992 PDI_a_QSOX PDIa family 99.6 9.7E-16 2.1E-20 120.8 10.4 99 58-162 2-111 (114)
53 cd02984 TRX_PICOT TRX domain, 99.6 1.7E-15 3.7E-20 115.5 11.4 82 81-163 14-96 (97)
54 PLN02309 5'-adenylylsulfate re 99.6 1.4E-15 3E-20 145.6 12.3 105 58-166 346-456 (457)
55 KOG0912 Thiol-disulfide isomer 99.6 3.3E-16 7.2E-21 138.1 7.3 142 68-225 5-154 (375)
56 KOG0908 Thioredoxin-like prote 99.6 1.4E-15 3E-20 130.8 10.9 106 59-170 3-109 (288)
57 TIGR01130 ER_PDI_fam protein d 99.6 2.9E-15 6.2E-20 145.4 14.4 133 31-171 314-458 (462)
58 TIGR00424 APS_reduc 5'-adenyly 99.6 2.2E-15 4.7E-20 144.3 12.3 104 61-166 353-462 (463)
59 cd02975 PfPDO_like_N Pyrococcu 99.6 3.4E-15 7.3E-20 117.5 11.2 89 79-168 20-111 (113)
60 cd02986 DLP Dim1 family, Dim1- 99.6 4.8E-15 1.1E-19 114.8 10.5 87 79-165 12-109 (114)
61 PTZ00062 glutaredoxin; Provisi 99.6 1.4E-15 3E-20 131.0 7.7 131 77-223 13-145 (204)
62 cd02987 Phd_like_Phd Phosducin 99.6 1E-14 2.2E-19 123.4 12.1 101 57-165 62-173 (175)
63 PRK15412 thiol:disulfide inter 99.6 4.3E-14 9.3E-19 121.0 14.4 88 79-168 66-177 (185)
64 cd02951 SoxW SoxW family; SoxW 99.6 1.6E-14 3.4E-19 115.7 10.9 91 78-168 10-120 (125)
65 cd02947 TRX_family TRX family; 99.6 2.9E-14 6.4E-19 106.3 11.3 84 79-163 8-92 (93)
66 KOG1731 FAD-dependent sulfhydr 99.5 7.6E-15 1.6E-19 139.6 7.2 114 48-167 30-153 (606)
67 PRK03147 thiol-disulfide oxido 99.5 2.7E-13 5.9E-18 114.4 15.6 102 57-166 44-171 (173)
68 TIGR01295 PedC_BrcD bacterioci 99.5 7.3E-14 1.6E-18 111.3 11.3 84 79-164 21-121 (122)
69 TIGR00411 redox_disulf_1 small 99.5 1E-13 2.2E-18 102.2 10.3 80 84-166 2-81 (82)
70 cd02988 Phd_like_VIAF Phosduci 99.5 1.6E-13 3.6E-18 117.7 11.1 100 56-165 81-190 (192)
71 PRK14018 trifunctional thiored 99.5 2.8E-13 6.2E-18 131.4 13.6 87 79-165 54-171 (521)
72 TIGR00385 dsbE periplasmic pro 99.5 1.5E-12 3.2E-17 110.3 14.9 88 79-168 61-172 (173)
73 cd02982 PDI_b'_family Protein 99.5 2.5E-13 5.5E-18 104.6 8.8 86 81-166 12-102 (103)
74 TIGR02738 TrbB type-F conjugat 99.5 1.5E-12 3.2E-17 107.7 13.6 86 80-166 49-152 (153)
75 cd02952 TRP14_like Human TRX-r 99.5 7.6E-13 1.6E-17 104.4 11.0 84 79-163 19-118 (119)
76 cd02959 ERp19 Endoplasmic reti 99.4 2.2E-13 4.9E-18 107.8 6.9 99 69-168 8-114 (117)
77 PRK13728 conjugal transfer pro 99.4 3.2E-12 6.9E-17 107.7 13.9 101 57-169 56-173 (181)
78 cd03010 TlpA_like_DsbE TlpA-li 99.4 6.4E-12 1.4E-16 100.7 10.8 79 80-159 24-126 (127)
79 PRK00293 dipZ thiol:disulfide 99.4 1.2E-11 2.7E-16 122.8 14.8 98 68-167 462-570 (571)
80 PHA02125 thioredoxin-like prot 99.4 7.1E-12 1.5E-16 91.1 9.5 70 85-162 2-72 (75)
81 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 8.1E-12 1.8E-16 99.3 10.5 95 60-162 6-121 (123)
82 TIGR00412 redox_disulf_2 small 99.3 6.4E-12 1.4E-16 91.6 8.8 73 85-163 2-75 (76)
83 PF13098 Thioredoxin_2: Thiore 99.3 3.8E-12 8.2E-17 99.6 7.6 85 79-163 3-112 (112)
84 cd03009 TryX_like_TryX_NRX Try 99.3 1.8E-11 3.8E-16 98.7 9.2 74 61-142 5-106 (131)
85 TIGR02740 TraF-like TraF-like 99.3 5.1E-11 1.1E-15 107.7 12.9 89 80-168 165-265 (271)
86 TIGR01626 ytfJ_HI0045 conserve 99.3 7E-11 1.5E-15 100.1 12.7 118 44-163 24-176 (184)
87 TIGR02187 GlrX_arch Glutaredox 99.3 3.3E-11 7.2E-16 105.6 11.1 81 82-165 134-214 (215)
88 cd02964 TryX_like_family Trypa 99.2 2.6E-11 5.6E-16 98.0 8.4 72 63-142 5-106 (132)
89 PLN02919 haloacid dehalogenase 99.2 8.1E-11 1.8E-15 124.4 13.6 101 62-168 407-537 (1057)
90 cd03008 TryX_like_RdCVF Trypar 99.2 6.4E-11 1.4E-15 96.9 9.8 71 65-143 16-120 (146)
91 cd02955 SSP411 TRX domain, SSP 99.2 8.5E-11 1.8E-15 93.7 9.9 87 78-165 12-117 (124)
92 cd02967 mauD Methylamine utili 99.2 7.6E-11 1.6E-15 92.4 8.4 86 61-152 7-112 (114)
93 cd02966 TlpA_like_family TlpA- 99.2 1.3E-10 2.8E-15 90.0 9.5 83 62-152 7-116 (116)
94 PF13905 Thioredoxin_8: Thiore 99.1 3.6E-10 7.7E-15 85.7 8.9 61 81-142 1-89 (95)
95 cd02973 TRX_GRX_like Thioredox 99.1 1.5E-10 3.3E-15 82.0 6.4 59 84-144 2-60 (67)
96 PTZ00056 glutathione peroxidas 99.1 3.5E-10 7.6E-15 97.9 9.5 105 58-170 23-181 (199)
97 TIGR02661 MauD methylamine deh 99.1 6.9E-10 1.5E-14 95.3 11.0 103 58-166 56-178 (189)
98 cd03012 TlpA_like_DipZ_like Tl 99.1 8.9E-10 1.9E-14 88.2 9.9 82 65-153 14-125 (126)
99 PF08534 Redoxin: Redoxin; In 99.1 9.3E-10 2E-14 90.2 10.1 93 62-161 16-144 (146)
100 PLN02399 phospholipid hydroper 99.1 9.9E-10 2.1E-14 97.0 10.8 102 59-168 84-235 (236)
101 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 9.5E-10 2E-14 82.6 9.2 77 80-160 11-87 (89)
102 cd02958 UAS UAS family; UAS is 99.1 2.4E-09 5.2E-14 84.2 11.2 98 69-167 6-111 (114)
103 cd03007 PDI_a_ERp29_N PDIa fam 99.0 7.5E-11 1.6E-15 92.4 0.8 88 171-277 3-115 (116)
104 COG4232 Thiol:disulfide interc 99.0 2.5E-09 5.4E-14 103.5 10.3 96 69-167 465-568 (569)
105 PRK11509 hydrogenase-1 operon 99.0 1.1E-08 2.4E-13 81.8 12.0 102 62-170 22-127 (132)
106 TIGR02540 gpx7 putative glutat 99.0 3.6E-09 7.8E-14 87.6 9.4 99 60-166 8-152 (153)
107 cd00340 GSH_Peroxidase Glutath 98.9 3.7E-09 8.1E-14 87.5 8.0 95 60-162 8-151 (152)
108 PLN02412 probable glutathione 98.9 1.3E-08 2.8E-13 85.6 10.7 102 59-168 14-165 (167)
109 cd02969 PRX_like1 Peroxiredoxi 98.9 3.3E-08 7.1E-13 83.4 12.6 107 60-173 10-158 (171)
110 cd02960 AGR Anterior Gradient 98.9 8.5E-09 1.8E-13 82.4 8.1 80 69-153 12-99 (130)
111 smart00594 UAS UAS domain. 98.8 3E-08 6.6E-13 79.0 10.2 94 69-163 16-121 (122)
112 KOG0914 Thioredoxin-like prote 98.8 7.7E-09 1.7E-13 87.7 6.2 93 53-150 120-221 (265)
113 cd03006 PDI_a_EFP1_N PDIa fami 98.8 6.1E-10 1.3E-14 87.4 -0.4 67 169-243 9-95 (113)
114 PTZ00256 glutathione peroxidas 98.8 7.6E-08 1.6E-12 82.2 11.1 103 58-168 24-182 (183)
115 PF13899 Thioredoxin_7: Thiore 98.7 2.1E-08 4.5E-13 74.1 5.8 72 69-143 6-81 (82)
116 COG0526 TrxA Thiol-disulfide i 98.7 5.3E-08 1.2E-12 74.8 8.4 83 81-163 32-120 (127)
117 KOG0913 Thiol-disulfide isomer 98.7 5.1E-09 1.1E-13 89.9 1.4 103 59-170 26-129 (248)
118 PRK00522 tpx lipid hydroperoxi 98.7 2.7E-07 5.8E-12 77.6 11.0 98 60-164 30-166 (167)
119 cd03014 PRX_Atyp2cys Peroxired 98.6 2E-07 4.4E-12 76.0 9.7 87 59-152 11-128 (143)
120 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 5.2E-09 1.1E-13 80.6 0.2 65 171-243 3-84 (104)
121 cd03017 PRX_BCP Peroxiredoxin 98.6 1.5E-07 3.3E-12 76.3 8.7 98 59-163 8-139 (140)
122 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 6.5E-09 1.4E-13 79.8 0.3 65 171-243 3-83 (101)
123 cd03015 PRX_Typ2cys Peroxiredo 98.6 2.9E-07 6.2E-12 77.8 9.9 96 65-167 20-157 (173)
124 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 5.7E-08 1.2E-12 76.9 5.3 81 63-150 14-123 (124)
125 cd02996 PDI_a_ERp44 PDIa famil 98.6 8.2E-09 1.8E-13 80.2 -0.3 65 171-243 3-89 (108)
126 PF13192 Thioredoxin_3: Thiore 98.6 3.5E-07 7.5E-12 66.5 8.2 73 86-164 3-76 (76)
127 TIGR02196 GlrX_YruB Glutaredox 98.6 4.4E-07 9.6E-12 64.6 8.1 69 85-164 2-74 (74)
128 PF01216 Calsequestrin: Calseq 98.5 6.9E-07 1.5E-11 81.2 10.2 149 57-224 34-192 (383)
129 PF13728 TraF: F plasmid trans 98.5 1.1E-06 2.5E-11 76.8 10.9 83 80-163 119-214 (215)
130 cd02970 PRX_like2 Peroxiredoxi 98.5 1.2E-06 2.6E-11 71.6 9.9 54 60-118 8-63 (149)
131 cd03018 PRX_AhpE_like Peroxire 98.5 1.6E-06 3.5E-11 71.0 10.5 98 60-163 13-147 (149)
132 PRK09437 bcp thioredoxin-depen 98.5 2.1E-06 4.7E-11 70.9 11.2 96 59-161 15-147 (154)
133 KOG2501 Thioredoxin, nucleored 98.5 3.5E-07 7.7E-12 74.7 6.1 68 80-147 32-129 (157)
134 TIGR03137 AhpC peroxiredoxin. 98.4 4.4E-06 9.4E-11 71.6 12.3 86 80-165 30-154 (187)
135 cd01659 TRX_superfamily Thiore 98.4 1.5E-06 3.2E-11 59.0 7.5 59 85-144 1-62 (69)
136 PF00085 Thioredoxin: Thioredo 98.4 2.1E-08 4.6E-13 76.5 -2.4 64 172-243 2-82 (103)
137 PRK10606 btuE putative glutath 98.4 1.3E-06 2.9E-11 74.3 8.2 53 58-118 9-63 (183)
138 KOG4277 Uncharacterized conser 98.4 4.8E-08 1E-12 86.8 -0.8 47 189-243 46-111 (468)
139 cd03002 PDI_a_MPD1_like PDI fa 98.4 8.3E-08 1.8E-12 74.4 0.6 64 172-243 3-85 (109)
140 TIGR00424 APS_reduc 5'-adenyly 98.4 5.3E-08 1.2E-12 93.8 -0.7 84 170-275 352-460 (463)
141 TIGR02200 GlrX_actino Glutared 98.4 1.2E-06 2.6E-11 63.2 6.5 69 85-164 2-76 (77)
142 cd03065 PDI_b_Calsequestrin_N 98.4 5.5E-08 1.2E-12 77.0 -0.7 68 171-243 11-98 (120)
143 TIGR03143 AhpF_homolog putativ 98.3 4.1E-06 9E-11 83.6 12.0 135 80-223 365-505 (555)
144 cd02993 PDI_a_APS_reductase PD 98.3 6.6E-08 1.4E-12 75.3 -0.8 65 171-243 3-89 (109)
145 PLN02309 5'-adenylylsulfate re 98.3 6.6E-08 1.4E-12 93.1 -1.3 86 170-277 346-456 (457)
146 COG2143 Thioredoxin-related pr 98.3 2.5E-05 5.5E-10 63.3 13.3 90 78-167 39-149 (182)
147 cd02994 PDI_a_TMX PDIa family, 98.3 1.2E-07 2.6E-12 72.5 -0.4 63 171-243 3-82 (101)
148 cd03001 PDI_a_P5 PDIa family, 98.3 1.1E-07 2.3E-12 72.9 -0.9 64 172-243 3-83 (103)
149 KOG0910 Thioredoxin-like prote 98.3 7.6E-08 1.6E-12 77.9 -1.8 63 173-243 47-126 (150)
150 cd02968 SCO SCO (an acronym fo 98.3 3.8E-06 8.3E-11 68.1 8.0 46 60-112 8-54 (142)
151 TIGR02739 TraF type-F conjugat 98.3 1.1E-05 2.3E-10 72.1 11.3 88 80-168 149-249 (256)
152 PF02114 Phosducin: Phosducin; 98.2 7.1E-06 1.5E-10 73.8 9.8 105 57-167 125-238 (265)
153 PRK13190 putative peroxiredoxi 98.2 1.3E-05 2.8E-10 69.6 10.9 95 66-167 19-154 (202)
154 cd02991 UAS_ETEA UAS family, E 98.2 1.5E-05 3.3E-10 62.7 10.0 97 69-168 6-114 (116)
155 cd02971 PRX_family Peroxiredox 98.2 1.3E-05 2.9E-10 64.7 9.9 89 60-155 8-131 (140)
156 PF14595 Thioredoxin_9: Thiore 98.2 7.5E-06 1.6E-10 65.7 8.0 75 79-155 39-118 (129)
157 KOG0911 Glutaredoxin-related p 98.2 2.1E-06 4.5E-11 73.7 4.4 79 78-157 14-93 (227)
158 PF07912 ERp29_N: ERp29, N-ter 98.2 3.3E-05 7.2E-10 60.3 10.6 101 62-169 7-121 (126)
159 PRK10382 alkyl hydroperoxide r 98.1 2.1E-05 4.6E-10 67.3 10.5 88 80-167 30-156 (187)
160 TIGR02180 GRX_euk Glutaredoxin 98.1 6.4E-06 1.4E-10 60.5 6.1 58 85-145 1-63 (84)
161 PTZ00443 Thioredoxin domain-co 98.1 3.2E-07 7E-12 80.5 -1.3 67 170-244 31-118 (224)
162 cd02992 PDI_a_QSOX PDIa family 98.1 7.5E-07 1.6E-11 70.0 0.7 65 171-243 3-89 (114)
163 PRK13703 conjugal pilus assemb 98.1 3.2E-05 6.8E-10 68.7 10.6 88 80-167 142-241 (248)
164 cd02954 DIM1 Dim1 family; Dim1 98.1 3.6E-07 7.9E-12 71.4 -1.5 60 178-245 4-81 (114)
165 PRK15000 peroxidase; Provision 98.1 3.5E-05 7.6E-10 66.7 10.2 87 80-166 33-161 (200)
166 PF06110 DUF953: Eukaryotic pr 98.1 3.4E-05 7.4E-10 60.7 9.1 66 79-144 17-98 (119)
167 PHA02278 thioredoxin-like prot 98.0 7.3E-07 1.6E-11 68.8 -0.7 59 177-243 5-83 (103)
168 PF13848 Thioredoxin_6: Thiore 98.0 0.00011 2.3E-09 62.2 12.1 100 59-165 79-184 (184)
169 PRK11200 grxA glutaredoxin 1; 98.0 3.1E-05 6.7E-10 57.3 7.7 77 84-168 2-84 (85)
170 cd02999 PDI_a_ERp44_like PDIa 98.0 8.5E-07 1.8E-11 68.0 -0.9 46 189-242 21-82 (100)
171 cd02965 HyaE HyaE family; HyaE 98.0 2.7E-06 5.9E-11 66.1 1.9 75 159-243 2-94 (111)
172 cd02948 TRX_NDPK TRX domain, T 98.0 6.8E-07 1.5E-11 68.7 -1.5 61 175-243 6-82 (102)
173 cd03005 PDI_a_ERp46 PDIa famil 98.0 9.8E-07 2.1E-11 67.3 -0.6 63 172-243 3-84 (102)
174 cd02985 TRX_CDSP32 TRX family, 98.0 2.7E-07 5.8E-12 71.2 -4.2 59 177-243 4-82 (103)
175 cd02962 TMX2 TMX2 family; comp 98.0 6.2E-07 1.3E-11 74.0 -2.6 66 171-244 30-120 (152)
176 cd02956 ybbN ybbN protein fami 98.0 2.1E-06 4.5E-11 64.9 0.5 58 178-243 2-77 (96)
177 TIGR01126 pdi_dom protein disu 97.9 1.9E-06 4.1E-11 65.5 -0.1 62 174-243 1-80 (102)
178 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 1.6E-06 3.4E-11 66.3 -0.5 64 172-243 3-84 (104)
179 cd02957 Phd_like Phosducin (Ph 97.9 1.1E-06 2.3E-11 68.9 -1.6 65 173-245 8-89 (113)
180 cd03016 PRX_1cys Peroxiredoxin 97.9 0.00012 2.7E-09 63.5 11.1 96 66-167 16-154 (203)
181 cd02998 PDI_a_ERp38 PDIa famil 97.9 3.4E-06 7.3E-11 64.5 0.9 64 172-243 3-86 (105)
182 PF13848 Thioredoxin_6: Thiore 97.9 1.8E-05 4E-10 66.9 5.3 115 98-224 7-125 (184)
183 cd02989 Phd_like_TxnDC9 Phosdu 97.9 1.6E-06 3.4E-11 68.1 -1.3 59 177-243 13-86 (113)
184 PTZ00137 2-Cys peroxiredoxin; 97.9 8.1E-05 1.8E-09 66.8 9.5 94 67-166 90-224 (261)
185 PF03190 Thioredox_DsbH: Prote 97.9 6.1E-05 1.3E-09 62.5 7.5 86 57-148 18-117 (163)
186 TIGR03143 AhpF_homolog putativ 97.8 0.00012 2.7E-09 73.1 11.0 79 81-163 475-554 (555)
187 cd02976 NrdH NrdH-redoxin (Nrd 97.8 0.00011 2.4E-09 51.9 7.8 67 85-162 2-72 (73)
188 KOG1731 FAD-dependent sulfhydr 97.8 3.6E-06 7.8E-11 81.2 -0.5 65 171-243 41-127 (606)
189 KOG3414 Component of the U4/U6 97.8 0.0002 4.4E-09 55.9 9.0 96 69-167 14-120 (142)
190 cd02963 TRX_DnaJ TRX domain, D 97.8 3.6E-06 7.8E-11 65.8 -0.6 49 187-243 25-90 (111)
191 PRK13599 putative peroxiredoxi 97.8 0.00033 7.1E-09 61.3 11.6 87 80-166 27-155 (215)
192 cd03023 DsbA_Com1_like DsbA fa 97.8 0.00024 5.1E-09 58.0 9.9 33 80-112 4-36 (154)
193 cd02997 PDI_a_PDIR PDIa family 97.8 4.4E-06 9.5E-11 63.8 -0.6 63 173-243 4-86 (104)
194 PRK10877 protein disulfide iso 97.8 0.00013 2.7E-09 64.7 8.5 84 80-166 106-230 (232)
195 PRK09381 trxA thioredoxin; Pro 97.8 5.1E-06 1.1E-10 64.4 -0.4 66 170-243 4-86 (109)
196 cd03000 PDI_a_TMX3 PDIa family 97.7 6.1E-06 1.3E-10 63.5 -0.1 58 176-242 6-82 (104)
197 KOG3425 Uncharacterized conser 97.7 0.00022 4.7E-09 55.3 8.3 74 69-144 15-104 (128)
198 PTZ00253 tryparedoxin peroxida 97.7 0.0003 6.6E-09 60.8 10.2 97 64-167 26-164 (199)
199 TIGR02183 GRXA Glutaredoxin, G 97.7 0.00031 6.8E-09 52.1 8.4 77 85-169 2-84 (86)
200 PRK13191 putative peroxiredoxi 97.7 0.00021 4.6E-09 62.5 8.5 87 80-166 32-160 (215)
201 cd02961 PDI_a_family Protein D 97.7 6.4E-06 1.4E-10 61.9 -1.1 62 174-243 3-82 (101)
202 PRK10996 thioredoxin 2; Provis 97.7 5.8E-06 1.3E-10 67.3 -1.4 62 174-243 40-117 (139)
203 PRK15317 alkyl hydroperoxide r 97.7 0.00039 8.4E-09 69.0 11.2 84 81-168 116-199 (517)
204 KOG1672 ATP binding protein [P 97.6 0.00017 3.7E-09 60.7 7.1 73 79-152 82-155 (211)
205 PRK13189 peroxiredoxin; Provis 97.6 0.00085 1.8E-08 59.0 11.5 88 80-167 34-163 (222)
206 cd02984 TRX_PICOT TRX domain, 97.6 7.6E-06 1.6E-10 61.8 -1.5 59 177-243 3-79 (97)
207 KOG0908 Thioredoxin-like prote 97.6 9.8E-06 2.1E-10 70.6 -1.0 81 176-264 9-106 (288)
208 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.00069 1.5E-08 52.9 9.4 100 60-168 2-109 (111)
209 KOG2603 Oligosaccharyltransfer 97.6 0.00096 2.1E-08 60.2 11.1 113 56-172 39-171 (331)
210 cd02983 P5_C P5 family, C-term 97.6 0.00063 1.4E-08 54.7 9.2 94 81-174 20-122 (130)
211 KOG0912 Thiol-disulfide isomer 97.5 4.2E-05 9.2E-10 68.5 2.4 61 175-243 2-83 (375)
212 PF13462 Thioredoxin_4: Thiore 97.5 0.0013 2.8E-08 54.3 11.2 82 80-165 11-162 (162)
213 PTZ00051 thioredoxin; Provisio 97.5 9.3E-06 2E-10 61.5 -2.1 60 176-243 8-82 (98)
214 cd02981 PDI_b_family Protein D 97.5 0.00096 2.1E-08 50.2 9.1 81 78-165 14-96 (97)
215 PF07449 HyaE: Hydrogenase-1 e 97.5 0.00057 1.2E-08 52.7 7.2 94 57-158 9-106 (107)
216 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00066 1.4E-08 58.5 8.6 80 80-163 76-197 (197)
217 cd03419 GRX_GRXh_1_2_like Glut 97.4 0.00031 6.7E-09 51.2 5.3 58 85-146 2-63 (82)
218 KOG0907 Thioredoxin [Posttrans 97.4 4.2E-05 9E-10 59.2 0.4 48 188-243 23-85 (106)
219 TIGR02190 GlrX-dom Glutaredoxi 97.4 0.00025 5.4E-09 51.7 4.5 73 81-163 6-78 (79)
220 cd02953 DsbDgamma DsbD gamma f 97.4 3.8E-05 8.2E-10 59.0 -0.2 57 177-241 2-81 (104)
221 cd02950 TxlA TRX-like protein 97.4 4.4E-05 9.5E-10 62.4 -0.0 60 176-243 10-88 (142)
222 cd02987 Phd_like_Phd Phosducin 97.3 2.8E-05 6E-10 65.9 -1.3 64 172-243 65-146 (175)
223 cd03073 PDI_b'_ERp72_ERp57 PDI 97.3 0.0019 4E-08 50.5 9.1 73 94-166 31-110 (111)
224 cd02986 DLP Dim1 family, Dim1- 97.3 2.8E-05 6.1E-10 60.5 -1.3 58 178-243 4-79 (114)
225 TIGR03140 AhpF alkyl hydropero 97.3 0.0019 4.1E-08 64.0 11.2 84 81-168 117-200 (515)
226 cd02988 Phd_like_VIAF Phosduci 97.3 4E-05 8.7E-10 65.8 -1.1 67 171-245 84-165 (192)
227 COG3118 Thioredoxin domain-con 97.3 4.6E-05 1E-09 68.4 -0.9 65 171-243 25-108 (304)
228 TIGR01068 thioredoxin thioredo 97.2 5E-05 1.1E-09 57.3 -0.8 61 175-243 2-79 (101)
229 PLN00410 U5 snRNP protein, DIM 97.2 3.8E-05 8.3E-10 62.4 -1.7 60 176-243 11-89 (142)
230 PF02966 DIM1: Mitosis protein 97.2 0.0062 1.3E-07 48.3 10.4 94 69-166 11-116 (133)
231 PRK11657 dsbG disulfide isomer 97.2 0.0044 9.4E-08 55.6 10.7 85 80-164 116-249 (251)
232 cd03019 DsbA_DsbA DsbA family, 97.2 0.003 6.6E-08 52.9 9.2 33 80-112 14-46 (178)
233 PHA03050 glutaredoxin; Provisi 97.2 0.00084 1.8E-08 52.1 5.3 61 85-146 15-79 (108)
234 PF00462 Glutaredoxin: Glutare 97.1 0.00031 6.6E-09 48.2 2.2 54 85-145 1-58 (60)
235 cd02066 GRX_family Glutaredoxi 97.1 0.0016 3.5E-08 45.5 5.9 56 85-147 2-61 (72)
236 cd03029 GRX_hybridPRX5 Glutare 97.1 0.0017 3.6E-08 46.3 6.0 69 85-163 3-71 (72)
237 PRK10954 periplasmic protein d 97.0 0.0046 1E-07 53.7 9.2 32 81-112 37-71 (207)
238 PF05768 DUF836: Glutaredoxin- 97.0 0.0037 8E-08 45.8 7.3 78 84-164 1-81 (81)
239 cd02975 PfPDO_like_N Pyrococcu 96.9 0.00027 5.8E-09 55.4 0.6 47 189-243 25-86 (113)
240 cd02972 DsbA_family DsbA famil 96.9 0.0033 7.2E-08 46.5 6.6 59 85-143 1-91 (98)
241 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0079 1.7E-07 42.8 7.4 66 86-161 2-70 (72)
242 PRK10329 glutaredoxin-like pro 96.8 0.0048 1E-07 45.2 6.3 72 85-167 3-77 (81)
243 KOG3170 Conserved phosducin-li 96.7 0.011 2.4E-07 50.1 8.8 103 56-166 90-200 (240)
244 PRK15317 alkyl hydroperoxide r 96.6 0.019 4.2E-07 56.9 11.3 137 80-236 17-173 (517)
245 TIGR02181 GRX_bact Glutaredoxi 96.6 0.0041 8.9E-08 45.0 4.8 54 85-145 1-58 (79)
246 TIGR02189 GlrX-like_plant Glut 96.6 0.0031 6.7E-08 48.1 4.2 57 85-145 10-70 (99)
247 cd02947 TRX_family TRX family; 96.5 0.00057 1.2E-08 50.0 -0.2 58 178-243 2-74 (93)
248 cd02949 TRX_NTR TRX domain, no 96.5 0.00051 1.1E-08 52.0 -0.6 55 181-243 7-78 (97)
249 cd03067 PDI_b_PDIR_N PDIb fami 96.4 0.023 5.1E-07 42.9 7.8 91 69-165 12-110 (112)
250 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.017 3.7E-07 41.1 6.7 54 85-145 3-60 (73)
251 PHA02125 thioredoxin-like prot 96.3 0.0005 1.1E-08 49.5 -1.4 34 202-237 8-51 (75)
252 COG1225 Bcp Peroxiredoxin [Pos 96.3 0.023 5E-07 46.9 8.1 102 58-166 14-155 (157)
253 cd03418 GRX_GRXb_1_3_like Glut 96.3 0.017 3.7E-07 41.1 6.6 54 85-145 2-60 (75)
254 TIGR01295 PedC_BrcD bacterioci 96.2 0.00074 1.6E-08 53.7 -1.4 62 174-243 11-101 (122)
255 cd02959 ERp19 Endoplasmic reti 96.1 0.0015 3.2E-08 51.5 0.1 51 185-243 18-88 (117)
256 cd02952 TRP14_like Human TRX-r 96.0 0.0015 3.3E-08 51.6 -0.3 64 177-242 10-100 (119)
257 PTZ00062 glutaredoxin; Provisi 95.9 0.00074 1.6E-08 58.5 -2.7 62 176-245 6-75 (204)
258 TIGR03140 AhpF alkyl hydropero 95.8 0.099 2.2E-06 51.9 11.5 137 81-237 19-175 (515)
259 cd03066 PDI_b_Calsequestrin_mi 95.8 0.15 3.2E-06 38.9 10.1 80 80-166 18-100 (102)
260 PF11009 DUF2847: Protein of u 95.8 0.17 3.8E-06 38.8 10.2 88 69-159 10-104 (105)
261 PF13743 Thioredoxin_5: Thiore 95.8 0.038 8.2E-07 46.8 7.3 28 87-114 2-29 (176)
262 COG0695 GrxC Glutaredoxin and 95.7 0.017 3.6E-07 42.2 4.2 57 85-145 3-62 (80)
263 PF00837 T4_deiodinase: Iodoth 95.7 0.13 2.8E-06 45.2 10.2 54 56-114 81-135 (237)
264 cd03069 PDI_b_ERp57 PDIb famil 95.6 0.17 3.8E-06 38.7 9.7 80 79-166 16-103 (104)
265 TIGR00411 redox_disulf_1 small 95.5 0.0041 9E-08 45.0 0.4 35 202-238 9-59 (82)
266 PRK10638 glutaredoxin 3; Provi 95.3 0.02 4.3E-07 41.9 3.4 54 85-145 4-61 (83)
267 cd02951 SoxW SoxW family; SoxW 95.1 0.004 8.6E-08 49.3 -0.9 56 179-242 6-94 (125)
268 cd02982 PDI_b'_family Protein 95.0 0.0033 7.2E-08 47.7 -1.6 46 188-241 14-77 (103)
269 cd03028 GRX_PICOT_like Glutare 94.7 0.018 3.9E-07 43.0 1.7 48 91-145 21-72 (90)
270 TIGR00412 redox_disulf_2 small 94.7 0.0084 1.8E-07 43.3 -0.1 38 202-243 8-58 (76)
271 TIGR00365 monothiol glutaredox 94.7 0.029 6.2E-07 42.6 2.9 48 91-145 25-76 (97)
272 cd03013 PRX5_like Peroxiredoxi 94.3 0.052 1.1E-06 44.9 3.9 64 64-133 18-88 (155)
273 KOG3171 Conserved phosducin-li 94.3 0.12 2.6E-06 44.5 5.8 103 58-166 139-250 (273)
274 KOG0914 Thioredoxin-like prote 93.8 0.012 2.6E-07 50.7 -1.0 58 189-254 147-227 (265)
275 cd02973 TRX_GRX_like Thioredox 93.7 0.017 3.7E-07 40.2 -0.2 33 202-236 9-56 (67)
276 KOG1752 Glutaredoxin and relat 93.2 0.27 5.9E-06 37.7 5.8 56 85-145 16-76 (104)
277 COG1651 DsbG Protein-disulfide 93.0 0.82 1.8E-05 40.4 9.5 37 126-166 206-242 (244)
278 PRK10824 glutaredoxin-4; Provi 93.0 0.12 2.6E-06 40.5 3.6 51 91-145 28-79 (115)
279 PRK12759 bifunctional gluaredo 92.6 0.14 3E-06 49.4 4.1 54 85-145 4-69 (410)
280 PF01323 DSBA: DSBA-like thior 92.0 1.8 3.9E-05 36.4 9.9 36 126-164 158-193 (193)
281 COG0386 BtuE Glutathione perox 91.6 1.9 4.2E-05 35.3 8.9 49 56-112 7-55 (162)
282 PRK09301 circadian clock prote 91.3 0.91 2E-05 34.6 6.4 76 80-155 4-80 (103)
283 TIGR02654 circ_KaiB circadian 91.2 1 2.2E-05 33.3 6.4 74 82-155 3-77 (87)
284 cd02978 KaiB_like KaiB-like fa 91.1 1.2 2.6E-05 31.7 6.5 67 84-150 3-70 (72)
285 PF01216 Calsequestrin: Calseq 91.0 3.5 7.6E-05 38.4 11.0 126 56-194 145-276 (383)
286 PRK11509 hydrogenase-1 operon 89.8 0.28 6.1E-06 39.3 2.7 78 158-244 9-103 (132)
287 cd02955 SSP411 TRX domain, SSP 89.7 0.027 5.8E-07 44.8 -3.3 59 178-242 7-90 (124)
288 TIGR02740 TraF-like TraF-like 89.3 0.1 2.2E-06 47.3 -0.2 46 188-241 168-238 (271)
289 cd02974 AhpF_NTD_N Alkyl hydro 89.2 5.1 0.00011 30.1 9.0 74 80-166 18-93 (94)
290 PRK00293 dipZ thiol:disulfide 88.5 0.12 2.6E-06 52.0 -0.4 47 187-241 475-543 (571)
291 PF13417 GST_N_3: Glutathione 88.5 3.8 8.3E-05 28.9 7.7 74 87-170 1-74 (75)
292 cd03060 GST_N_Omega_like GST_N 88.5 1.1 2.4E-05 31.3 4.8 53 86-141 2-54 (71)
293 cd03068 PDI_b_ERp72 PDIb famil 88.4 9.1 0.0002 29.3 10.2 78 82-166 20-107 (107)
294 TIGR02738 TrbB type-F conjugat 87.9 0.41 8.8E-06 39.5 2.5 29 187-223 51-79 (153)
295 COG1999 Uncharacterized protei 87.7 4.1 8.8E-05 35.4 8.7 75 59-140 52-135 (207)
296 PHA03075 glutaredoxin-like pro 87.1 0.87 1.9E-05 35.3 3.6 30 82-111 2-31 (123)
297 cd03011 TlpA_like_ScsD_MtbDsbE 87.0 0.2 4.3E-06 39.1 0.1 28 187-222 21-48 (123)
298 cd03026 AhpF_NTD_C TRX-GRX-lik 86.2 0.29 6.3E-06 36.4 0.7 34 202-237 22-70 (89)
299 PF13899 Thioredoxin_7: Thiore 83.4 0.089 1.9E-06 38.3 -3.2 34 185-224 16-54 (82)
300 cd03051 GST_N_GTT2_like GST_N 83.0 2 4.3E-05 29.8 3.8 57 86-143 2-59 (74)
301 KOG2792 Putative cytochrome C 82.6 18 0.00039 32.4 10.2 88 80-168 138-276 (280)
302 PF09673 TrbC_Ftype: Type-F co 82.4 7.4 0.00016 30.3 7.1 42 98-144 36-80 (113)
303 KOG2507 Ubiquitin regulatory p 81.9 10 0.00022 36.3 8.8 89 79-167 16-111 (506)
304 cd02967 mauD Methylamine utili 81.1 1.1 2.3E-05 34.3 2.0 28 188-223 23-50 (114)
305 COG3019 Predicted metal-bindin 80.4 13 0.00028 30.1 7.7 75 83-167 26-104 (149)
306 COG1331 Highly conserved prote 80.3 8.9 0.00019 38.9 8.4 75 68-148 35-123 (667)
307 cd03041 GST_N_2GST_N GST_N fam 80.2 6.2 0.00013 28.0 5.6 74 85-166 2-76 (77)
308 cd03040 GST_N_mPGES2 GST_N fam 80.1 18 0.00038 25.3 9.0 75 85-168 2-77 (77)
309 PRK13730 conjugal transfer pil 79.8 11 0.00025 32.4 7.8 43 123-165 150-192 (212)
310 PF02630 SCO1-SenC: SCO1/SenC; 79.8 2.2 4.8E-05 35.8 3.6 46 59-111 37-83 (174)
311 KOG0913 Thiol-disulfide isomer 79.5 0.14 3.1E-06 44.7 -3.7 70 170-249 25-111 (248)
312 cd00570 GST_N_family Glutathio 79.4 1.8 3.9E-05 29.0 2.5 53 86-141 2-55 (71)
313 PF07912 ERp29_N: ERp29, N-ter 79.3 0.41 8.9E-06 37.7 -0.9 84 171-278 6-119 (126)
314 TIGR02742 TrbC_Ftype type-F co 79.0 4.8 0.0001 32.2 5.0 44 123-166 59-114 (130)
315 COG3634 AhpF Alkyl hydroperoxi 78.0 9.8 0.00021 35.8 7.3 82 80-165 115-196 (520)
316 COG4232 Thiol:disulfide interc 77.0 0.38 8.3E-06 47.6 -2.1 59 178-243 464-545 (569)
317 cd03031 GRX_GRX_like Glutaredo 76.5 2.4 5.3E-05 34.7 2.8 53 85-144 2-68 (147)
318 cd03059 GST_N_SspA GST_N famil 76.0 5.3 0.00011 27.6 4.2 70 86-165 2-71 (73)
319 cd02977 ArsC_family Arsenate R 75.0 2.9 6.3E-05 31.8 2.8 21 86-106 2-22 (105)
320 PF06053 DUF929: Domain of unk 74.9 15 0.00033 32.8 7.5 58 78-142 55-112 (249)
321 COG2761 FrnE Predicted dithiol 74.2 9 0.0002 33.6 5.8 44 126-172 175-218 (225)
322 cd03045 GST_N_Delta_Epsilon GS 73.4 3.3 7E-05 28.8 2.5 54 86-140 2-56 (74)
323 PF07689 KaiB: KaiB domain; I 72.7 1.8 3.9E-05 31.7 1.0 55 88-142 3-58 (82)
324 COG4545 Glutaredoxin-related p 71.9 2 4.4E-05 30.7 1.1 63 86-148 5-77 (85)
325 KOG1651 Glutathione peroxidase 70.8 7.5 0.00016 32.3 4.3 122 56-193 16-152 (171)
326 cd02964 TryX_like_family Trypa 70.7 2.7 5.7E-05 33.3 1.7 30 188-225 19-48 (132)
327 smart00594 UAS UAS domain. 70.2 0.7 1.5E-05 36.4 -1.8 48 187-240 28-94 (122)
328 cd03035 ArsC_Yffb Arsenate Red 70.1 4.5 9.8E-05 31.0 2.8 21 86-106 2-22 (105)
329 PF09822 ABC_transp_aux: ABC-t 68.3 89 0.0019 27.9 12.1 92 78-169 21-144 (271)
330 COG3531 Predicted protein-disu 68.3 8.2 0.00018 33.1 4.1 43 125-167 164-209 (212)
331 PF00255 GSHPx: Glutathione pe 68.0 4.5 9.8E-05 31.3 2.4 47 58-112 5-51 (108)
332 KOG1672 ATP binding protein [P 67.3 1.3 2.8E-05 37.7 -0.8 87 162-256 60-162 (211)
333 cd03036 ArsC_like Arsenate Red 66.6 5.9 0.00013 30.6 2.8 21 86-106 2-22 (111)
334 PRK01655 spxA transcriptional 65.8 7.3 0.00016 31.1 3.3 22 85-106 2-23 (131)
335 cd03009 TryX_like_TryX_NRX Try 65.0 3.8 8.3E-05 32.2 1.5 30 188-225 20-49 (131)
336 cd03037 GST_N_GRX2 GST_N famil 63.4 13 0.00028 25.6 3.9 69 86-164 2-70 (71)
337 PF07449 HyaE: Hydrogenase-1 e 62.6 1.2 2.6E-05 34.4 -1.7 26 226-251 76-101 (107)
338 KOG2603 Oligosaccharyltransfer 62.2 14 0.00031 33.9 4.7 79 158-240 25-134 (331)
339 cd03024 DsbA_FrnE DsbA family, 61.1 9.7 0.00021 32.2 3.4 36 125-163 165-200 (201)
340 TIGR01617 arsC_related transcr 60.9 8.4 0.00018 29.9 2.8 20 86-105 2-21 (117)
341 cd03055 GST_N_Omega GST_N fami 60.8 23 0.00049 25.8 5.0 54 85-141 19-72 (89)
342 PF13778 DUF4174: Domain of un 58.0 87 0.0019 24.4 9.5 83 84-166 12-111 (118)
343 PRK12559 transcriptional regul 55.8 14 0.0003 29.5 3.3 22 85-106 2-23 (131)
344 cd03032 ArsC_Spx Arsenate Redu 55.8 14 0.00031 28.5 3.3 22 85-106 2-23 (115)
345 cd03010 TlpA_like_DsbE TlpA-li 54.8 6.8 0.00015 30.5 1.3 28 188-223 27-54 (127)
346 cd03056 GST_N_4 GST_N family, 54.7 11 0.00024 25.8 2.3 53 86-141 2-57 (73)
347 COG5309 Exo-beta-1,3-glucanase 53.2 23 0.00049 32.0 4.4 83 80-167 73-162 (305)
348 cd03022 DsbA_HCCA_Iso DsbA fam 52.0 16 0.00035 30.5 3.3 35 125-163 157-191 (192)
349 KOG0855 Alkyl hydroperoxide re 51.6 8.3 0.00018 32.2 1.3 64 62-131 77-145 (211)
350 cd03025 DsbA_FrnE_like DsbA fa 51.5 23 0.0005 29.6 4.2 28 85-112 3-30 (193)
351 cd03008 TryX_like_RdCVF Trypar 51.2 9.4 0.0002 31.2 1.6 29 188-224 27-55 (146)
352 cd02966 TlpA_like_family TlpA- 50.9 12 0.00026 27.6 2.1 29 188-224 21-49 (116)
353 PF13905 Thioredoxin_8: Thiore 48.7 6.1 0.00013 28.9 0.1 28 189-224 4-31 (95)
354 PRK13728 conjugal transfer pro 48.1 9 0.00019 32.5 1.1 26 190-223 73-98 (181)
355 COG0526 TrxA Thiol-disulfide i 47.1 9.7 0.00021 27.8 1.1 21 202-224 42-62 (127)
356 PRK14018 trifunctional thiored 46.0 11 0.00024 37.4 1.5 28 188-223 58-85 (521)
357 PRK13344 spxA transcriptional 45.4 25 0.00055 28.1 3.2 21 85-105 2-22 (132)
358 cd03023 DsbA_Com1_like DsbA fa 45.2 5.8 0.00013 31.6 -0.5 27 189-223 8-34 (154)
359 PF04134 DUF393: Protein of un 43.7 36 0.00078 25.9 3.8 50 88-141 2-55 (114)
360 TIGR00385 dsbE periplasmic pro 42.2 12 0.00025 31.2 0.9 26 188-221 65-90 (173)
361 cd03074 PDI_b'_Calsequestrin_C 42.0 1.6E+02 0.0035 22.8 9.9 88 80-167 19-120 (120)
362 PF13728 TraF: F plasmid trans 42.0 8.2 0.00018 33.7 -0.1 28 189-224 123-150 (215)
363 cd03012 TlpA_like_DipZ_like Tl 39.9 16 0.00035 28.4 1.4 33 188-228 25-57 (126)
364 PF04592 SelP_N: Selenoprotein 39.7 54 0.0012 29.0 4.6 33 79-111 24-56 (238)
365 KOG1422 Intracellular Cl- chan 39.1 2E+02 0.0042 25.1 7.7 69 92-170 20-88 (221)
366 PF02114 Phosducin: Phosducin; 36.7 12 0.00027 33.8 0.2 48 189-244 149-210 (265)
367 PLN02412 probable glutathione 36.4 17 0.00037 30.1 1.0 39 189-235 32-70 (167)
368 PRK15412 thiol:disulfide inter 36.3 15 0.00032 31.0 0.6 26 188-221 70-95 (185)
369 PRK03147 thiol-disulfide oxido 34.4 22 0.00047 29.2 1.3 29 189-225 64-92 (173)
370 PF09695 YtfJ_HI0045: Bacteria 34.3 2.7E+02 0.0059 23.1 9.5 117 46-164 4-155 (160)
371 TIGR02540 gpx7 putative glutat 34.2 19 0.00042 29.1 1.0 31 202-234 32-62 (153)
372 PTZ00256 glutathione peroxidas 34.2 19 0.00041 30.3 0.9 31 202-234 51-81 (183)
373 PTZ00056 glutathione peroxidas 33.3 18 0.00039 31.0 0.7 31 202-234 49-79 (199)
374 cd03033 ArsC_15kD Arsenate Red 32.4 57 0.0012 25.2 3.3 22 85-106 2-23 (113)
375 cd03053 GST_N_Phi GST_N family 32.1 52 0.0011 22.7 2.9 73 85-165 2-75 (76)
376 PLN02399 phospholipid hydroper 31.9 18 0.00039 32.1 0.4 39 188-234 101-139 (236)
377 cd03025 DsbA_FrnE_like DsbA fa 30.4 47 0.001 27.7 2.8 21 125-145 159-179 (193)
378 cd03049 GST_N_3 GST_N family, 30.1 1.1E+02 0.0024 20.8 4.3 56 86-144 2-59 (73)
379 COG0295 Cdd Cytidine deaminase 29.6 86 0.0019 25.2 3.9 12 92-103 87-98 (134)
380 PRK11372 lysozyme inhibitor; P 29.3 42 0.00092 25.9 2.0 19 1-19 1-19 (109)
381 cd03052 GST_N_GDAP1 GST_N fami 28.7 48 0.001 23.1 2.2 52 86-140 2-56 (73)
382 TIGR02661 MauD methylamine deh 28.7 32 0.00069 29.1 1.4 26 189-222 77-102 (189)
383 PRK10606 btuE putative glutath 27.1 26 0.00057 29.7 0.6 40 188-236 27-66 (183)
384 COG0278 Glutaredoxin-related p 26.8 1.2E+02 0.0027 23.1 4.0 50 90-144 27-79 (105)
385 cd02990 UAS_FAF1 UAS family, F 25.1 3.6E+02 0.0079 21.6 11.6 87 79-167 19-133 (136)
386 PF08806 Sep15_SelM: Sep15/Sel 24.8 1.1E+02 0.0025 22.0 3.5 33 135-167 41-76 (78)
387 PLN02919 haloacid dehalogenase 23.9 36 0.00077 37.1 1.0 27 189-223 423-449 (1057)
388 cd00340 GSH_Peroxidase Glutath 23.8 51 0.0011 26.6 1.7 35 188-231 24-58 (152)
389 PF05364 SecIII_SopE_N: Salmon 23.2 23 0.00049 24.5 -0.4 21 300-320 45-66 (74)
390 PLN02182 cytidine deaminase 22.9 40 0.00087 31.5 1.0 15 88-103 128-142 (339)
391 COG1393 ArsC Arsenate reductas 22.7 1E+02 0.0022 24.0 3.2 22 85-106 3-24 (117)
392 cd03034 ArsC_ArsC Arsenate Red 20.6 1E+02 0.0022 23.6 2.8 21 86-106 2-22 (112)
393 PF07700 HNOB: Heme NO binding 20.3 1.7E+02 0.0038 24.1 4.3 42 81-122 127-169 (171)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-30 Score=244.74 Aligned_cols=108 Identities=28% Similarity=0.529 Sum_probs=98.4
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccCCChhHHHhCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYG 132 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~ 132 (320)
+..|.+++.++ |++. ++.+..++|.||||||+||++++|.|+++|+.+.. .+.++.+||.++.++|++|+
T Consensus 24 ~~~Vl~Lt~dn--f~~~-----i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~ 96 (493)
T KOG0190|consen 24 EEDVLVLTKDN--FKET-----INGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYE 96 (493)
T ss_pred ccceEEEeccc--HHHH-----hccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhc
Confidence 56788888888 8888 57889999999999999999999999999999875 57788899999999999999
Q ss_pred CCccCeEEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 133 VHGFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 133 V~~~Pti~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
|++|||+.+| ||+....|+|+++.+.|+.|+.+..|+.
T Consensus 97 v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 97 VRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred CCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCC
Confidence 9999999999 8887899999999999999999986654
No 2
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=99.91 E-value=1.3e-24 Score=192.04 Aligned_cols=282 Identities=41% Similarity=0.636 Sum_probs=209.4
Q ss_pred cCCCCCCchhHHHHhhhhcCCCcccccC-CCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHH
Q 020846 26 VRFPLCPTESVTDSIFRFQDSFCPISCN-DFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFS 104 (320)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~ 104 (320)
.+.+.|..+...+.+...... +.... ....++..++++- ++.+.+.+..++..++-+.||++|||..+..+|.++
T Consensus 24 v~~~vc~~esa~~~~~l~~e~--~~~lh~~~~~~~~e~~~~~--l~~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd 99 (319)
T KOG2640|consen 24 VDLPVCGVESALFSIRLLREC--PRSLHRPSFEEAIEVDGDC--LQVLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFD 99 (319)
T ss_pred eccceeeeeehhhhhhhhhhc--cccccCCCCchhhhcccch--hhHHHHhhccccCCcccccchhcccCcccccCcccc
Confidence 666789988877766554332 11111 0111223344444 666666666677889999999999999999999999
Q ss_pred HHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCCCCCCCCCChhh-h-
Q 020846 105 VLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTASLDKISPDK-V- 182 (320)
Q Consensus 105 ~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~-~- 182 (320)
-....|+.+.++++++....+.+.++|++.+.|++.+.+..-..+|.|.++.++|++|+.+.++.. ..++..+... .
T Consensus 100 ~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l~sLv~fy~~i~~~~-v~ie~~d~~~~~~ 178 (319)
T KOG2640|consen 100 VRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDLASLVNFYTEITPMS-VLIEILDCTSCLE 178 (319)
T ss_pred hhhhhccccccccHHHHhhcccchhccccccCCcceeeccccchhhcccccHHHHHHHHHhhccch-hcccccCccccee
Confidence 999999988899988888889999999999999999999999999999999999999999999733 1111111111 0
Q ss_pred -ccCCCc-ccccccCCCcCCcccCC--CcccccChHHHHHHHHHHHHHHHHhhhchhHhhhhchhhhhhhhhcccccccc
Q 020846 183 -GKASNH-EKHNNTEEESCPFSWAR--SPENLLQQETYLALATAFVLLRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLE 258 (320)
Q Consensus 183 -~~~~~~-~~~~f~~~~~~~~~wc~--~c~~~~~~~~~~~la~~f~~~~~~i~~~Pti~~~~~~~~~~~~~~~~~~~~~~ 258 (320)
+.-..+ ..-.-.....++++|-+ ...+++++++|..+|..|...+.++..||+.+.+.+-.|..+.++++++.+.+
T Consensus 179 ~~ry~~~~~~t~l~~p~~~~~~~~r~~~~~e~~~~~~~~slat~fv~l~~~~li~P~a~~~v~~~~~~~~~~l~l~~l~e 258 (319)
T KOG2640|consen 179 PVRYVPEGGPTILLAPDGNLFTWARPASKFELLRQETYSSLATVFVSLKNNILIFPIAVSRVKFTWADVAPNLSLGILVE 258 (319)
T ss_pred eeEeccccCcccccCcCCCcchhcccccccchhhhhhHHHHHHHHHHHHhhhhhccchhhhhheeHHhhcccccccccch
Confidence 000000 00011123345678886 56777999999999999999999999999999999999999999999997776
Q ss_pred chhhHhhHHHHHH----HHhcccc--cCcccccCcccchhhcccccceeecCCCCCcCcccccc
Q 020846 259 HPRTYLNRAIQLF----KTLNEPC--KRSNLQEGALNARAWASKSLATVSIGDASSSRGACVNE 316 (320)
Q Consensus 259 ~~~~y~~r~~~~~----~~l~~~~--~t~~~~~g~~~~~~wa~~~~~~~~~~~~~~~~~~~~~~ 316 (320)
.. .+|..... .++ +.+ ++.+++++++|+++||++|||+||||++||+.+.+..+
T Consensus 259 ~~---f~~~~~~v~~~~~~i-~l~l~~~~~lq~~~~na~~w~~~~la~~si~~~S~~~~~~~~~ 318 (319)
T KOG2640|consen 259 TS---FERKLHMVDTYLLWI-ELCLTKTRNLQWFAKNARAWASSSLASVSIRTESSSSQIPSQS 318 (319)
T ss_pred hh---hhhhhhhhhhhhhhh-hhHHHHhHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCccc
Confidence 43 33322221 333 344 56899999999999999999999999999887666543
No 3
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-24 Score=203.80 Aligned_cols=182 Identities=23% Similarity=0.312 Sum_probs=151.8
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCC
Q 020846 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (320)
Q Consensus 77 ~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~ 155 (320)
....+++++|+||||||++|+.+.|.|+++++.+.+.+.++.+||+++.++|++|+|.++||+.+| .+..+..|.|.++
T Consensus 43 ~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~ 122 (383)
T KOG0191|consen 43 LLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRN 122 (383)
T ss_pred hhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCccc
Confidence 357889999999999999999999999999999999999999999999999999999999999999 5567899999999
Q ss_pred HHHHHHHHHHhhCCCCCC--------CCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH--
Q 020846 156 LDSLVAFYSDVTGMNTAS--------LDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-- 224 (320)
Q Consensus 156 ~~~l~~~i~~~~~~~~~~--------l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-- 224 (320)
.+.+.+|+.+.+...+.. ++..+++..+...+. +++.||+ |||+||+++ .+.|+.+|..+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a------Pwc~~ck~l--~~~~~~~a~~~~~~ 194 (383)
T KOG0191|consen 123 AESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYA------PWCGHCKKL--APEWEKLAKLLKSK 194 (383)
T ss_pred HHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEec------cccHHhhhc--ChHHHHHHHHhccC
Confidence 999999999988654433 445677777666665 7888875 999999999 999999998663
Q ss_pred ----------------HHHHHhhhchhHhhhhchhhhhhhhhccccccccchhhHh-hHHHHHH-HHhcccccC
Q 020846 225 ----------------LLRLVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYL-NRAIQLF-KTLNEPCKR 280 (320)
Q Consensus 225 ----------------~~~~~i~~~Pti~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~r~~~~~-~~l~~~~~t 280 (320)
+.++.|.+|||+++|++|. +....|. .|....+ .|++...++
T Consensus 195 ~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~--------------~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 195 ENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGE--------------EDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred cceEEEeeccchHHHHhhhhcccCCceEEEecCCC--------------cccccccccccHHHHHHHHHhhcCC
Confidence 4899999999999999987 3233344 5654444 777755543
No 4
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.88 E-value=8.6e-22 Score=154.62 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=89.8
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHH-HhCCCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSIL-SKYGVH 134 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~-~~~~V~ 134 (320)
..+|..++.++ |+++.+ +.+.+++++|+||||||++|+.+.|.|+++++++++.+.++.+||+.+.++| ++|+|.
T Consensus 8 ~~~v~~l~~~~--f~~~~~--v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~ 83 (113)
T cd03006 8 RSPVLDFYKGQ--LDYAEE--LRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFF 83 (113)
T ss_pred CCCeEEechhh--hHHHHh--cccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCc
Confidence 34456666666 887621 2478899999999999999999999999999999988888888999999999 589999
Q ss_pred ccCeEEEE-eCceeEEEeCCCCHHHHHHHH
Q 020846 135 GFPTLFLL-NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~~~~~~l~~~i 163 (320)
++||+++| +|+...+|.|.++.+.|+.|+
T Consensus 84 ~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 84 YFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999999 888889999999999998873
No 5
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.8e-22 Score=157.83 Aligned_cols=104 Identities=21% Similarity=0.315 Sum_probs=94.1
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCe
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
+.+++..+ |++. +.+++.||+|+|||+||++|+.+.|.+++++.+|.|...++.+|.|++.+++.+|+|.++||
T Consensus 45 ~~~~s~~~--~~~~----Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 45 FNVQSDSE--FDDK----VINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred ccccCHHH--HHHH----HHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 33444445 5555 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
+++| ||+...++.|..+.+.|.++|++.++
T Consensus 119 vlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999 88888899999999999999998864
No 6
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.85 E-value=4.9e-21 Score=147.73 Aligned_cols=96 Identities=21% Similarity=0.413 Sum_probs=86.0
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeE
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL 139 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti 139 (320)
..++.++ |++. + +.+++++|+|||+||++|+.+.|.|+++++++++...++.+||++++.+|++++|+++||+
T Consensus 4 ~~l~~~~--f~~~----v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 76 (101)
T cd03003 4 VTLDRGD--FDAA----V-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSL 76 (101)
T ss_pred EEcCHhh--HHHH----h-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEE
Confidence 4445555 8877 3 5668999999999999999999999999999998888888899999999999999999999
Q ss_pred EEE-eCceeEEEeCCCCHHHHHHH
Q 020846 140 FLL-NSSMRVRYHGSRTLDSLVAF 162 (320)
Q Consensus 140 ~l~-~g~~~~~~~G~~~~~~l~~~ 162 (320)
++| +|+...+|.|.++.++|.+|
T Consensus 77 ~~~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCcccCCCCCCHHHHHhh
Confidence 999 88888999999999999887
No 7
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=2.4e-20 Score=143.62 Aligned_cols=102 Identities=30% Similarity=0.572 Sum_probs=91.6
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCe
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
|..++.++ |++. +.+++++++|+||++||++|+.+.|.|+++++.+++.+.+..+|+++++.++++|+|.++||
T Consensus 1 v~~lt~~~--f~~~----i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 1 VIVLTDEN--FEKF----INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp SEEESTTT--HHHH----HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred CEECCHHH--HHHH----HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCE
Confidence 35667777 7777 45558999999999999999999999999999999767777779999999999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHh
Q 020846 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
+++| +|+...+|.|.++.++|.+||+++
T Consensus 75 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 75 IIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999 888888999999999999999875
No 8
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=9.1e-21 Score=146.92 Aligned_cols=99 Identities=20% Similarity=0.310 Sum_probs=86.9
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCe
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
+..++.++ |++. +.+++++++|+|||+||++|+++.|.|+++++++.+...++.+||++++++|++|+|.++||
T Consensus 3 v~~l~~~~--f~~~----i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt 76 (104)
T cd03004 3 VITLTPED--FPEL----VLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPT 76 (104)
T ss_pred ceEcCHHH--HHHH----HhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccE
Confidence 34445444 7776 56677899999999999999999999999999998888888889999999999999999999
Q ss_pred EEEE-eC-ceeEEEeCCCC-HHHHHHHH
Q 020846 139 LFLL-NS-SMRVRYHGSRT-LDSLVAFY 163 (320)
Q Consensus 139 i~l~-~g-~~~~~~~G~~~-~~~l~~~i 163 (320)
+++| +| +.+.+|.|..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999 66 88899999987 99999875
No 9
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.84 E-value=1.9e-20 Score=144.31 Aligned_cols=90 Identities=61% Similarity=1.145 Sum_probs=79.2
Q ss_pred HHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC-CChhHHHhCCCCccCeEEEE-eCceeEE
Q 020846 72 ALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLL-NSSMRVR 149 (320)
Q Consensus 72 ~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~V~~~Pti~l~-~g~~~~~ 149 (320)
..+.+...++++++|.|||+||++|+.+.|.|++++++++++..+.+ |.+ .++.++++|+|.++||+++| +| .+.+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~v-d~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~ 86 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAI-EESSIKPSLLSRYGVVGFPTILLFNST-PRVR 86 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEE-ECCCCCHHHHHhcCCeecCEEEEEcCC-ceeE
Confidence 33445557899999999999999999999999999999998777776 555 78999999999999999999 56 8889
Q ss_pred EeCCCCHHHHHHHH
Q 020846 150 YHGSRTLDSLVAFY 163 (320)
Q Consensus 150 ~~G~~~~~~l~~~i 163 (320)
|.|.++.++|.+||
T Consensus 87 ~~G~~~~~~l~~f~ 100 (100)
T cd02999 87 YNGTRTLDSLAAFY 100 (100)
T ss_pred ecCCCCHHHHHhhC
Confidence 99999999999985
No 10
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.83 E-value=3.1e-20 Score=162.76 Aligned_cols=156 Identities=14% Similarity=0.149 Sum_probs=117.0
Q ss_pred CCCeEEEEEEc---CCCHHHHhhHHHHHHHHHHcCCCC-eEEEeccCCChhHHHhCCCCccCeEEEE-eCcee-EEEeCC
Q 020846 80 SHEYVAVLFYA---SWCPFSRNFRPSFSVLSSLYSSIP-HFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VRYHGS 153 (320)
Q Consensus 80 ~~~~vlV~Fya---~wC~~Ck~~~p~~~~la~~~~~~~-~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~-~~~~G~ 153 (320)
.+...++.|++ +||++|+.+.|.+++++++++++. .+..+|.+++++++++|+|.++||+++| +|+.. .++.|.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34566777988 999999999999999999996532 2223345589999999999999999999 77776 589999
Q ss_pred CCHHHHHHHHHHhhCCC--CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHH-------
Q 020846 154 RTLDSLVAFYSDVTGMN--TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAF------- 223 (320)
Q Consensus 154 ~~~~~l~~~i~~~~~~~--~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f------- 223 (320)
.+.+++.+||+..++.. ...++.+..+.+-..... .++.|+. +||++|+.+ .+..+.++...
T Consensus 98 ~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a------~~C~~C~~~--~~~l~~l~~~~~~i~~~~ 169 (215)
T TIGR02187 98 PAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVT------PTCPYCPYA--VLMAHKFALANDKILGEM 169 (215)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEEC------CCCCCcHHH--HHHHHHHHHhcCceEEEE
Confidence 99999999999886543 222333333333322223 4444664 999999999 88888888654
Q ss_pred --------HHHHHHhhhchhHhhhhchh
Q 020846 224 --------VLLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 224 --------~~~~~~i~~~Pti~~~~~~~ 243 (320)
...+|+|.++||+.++.+|.
T Consensus 170 vD~~~~~~~~~~~~V~~vPtl~i~~~~~ 197 (215)
T TIGR02187 170 IEANENPDLAEKYGVMSVPKIVINKGVE 197 (215)
T ss_pred EeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence 23889999999999876553
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=5.6e-20 Score=143.60 Aligned_cols=98 Identities=27% Similarity=0.515 Sum_probs=83.8
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC------CCeEEEeccCCChhHHHhCC
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAIRPSILSKYG 132 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~------~~~v~~~~~~~~~~l~~~~~ 132 (320)
+..++.++ |++. .+.+++++|.||||||++|+++.|.|+++++.+++ ...+..+||+.+++++++|+
T Consensus 3 v~~l~~~~--f~~~-----i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~ 75 (108)
T cd02996 3 IVSLTSGN--IDDI-----LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYR 75 (108)
T ss_pred eEEcCHhh--HHHH-----HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCC
Confidence 45556555 8877 36678999999999999999999999999987632 36677789999999999999
Q ss_pred CCccCeEEEE-eCc-eeEEEeCCCCHHHHHHHH
Q 020846 133 VHGFPTLFLL-NSS-MRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 133 V~~~Pti~l~-~g~-~~~~~~G~~~~~~l~~~i 163 (320)
|+++||+++| +|+ ....|.|.++.++|.+||
T Consensus 76 v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 INKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999999 776 458899999999999985
No 12
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.82 E-value=2.8e-19 Score=156.28 Aligned_cols=111 Identities=19% Similarity=0.352 Sum_probs=90.9
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCcc
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGF 136 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~ 136 (320)
+.+..++.++ |++.........+++++|+||||||++|+++.|.|+++++++++...++.+|++++++++++|+|+++
T Consensus 30 ~~Vv~Lt~~n--F~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 30 NALVLLNDKN--FEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCcEECCHHH--HHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcC
Confidence 3455555555 88872211112358999999999999999999999999999998888888899999999999999999
Q ss_pred CeEEEE-eCceeEEEeCCCCHHHHHHHHHHhhCC
Q 020846 137 PTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTGM 169 (320)
Q Consensus 137 Pti~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~ 169 (320)
||+++| +|+....+.|.++.++|.+|+.+....
T Consensus 108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence 999999 676655566789999999999988753
No 13
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.82 E-value=1.3e-19 Score=141.52 Aligned_cols=100 Identities=25% Similarity=0.486 Sum_probs=86.2
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCC--ChhHHHhCCCCcc
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVHGF 136 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~--~~~l~~~~~V~~~ 136 (320)
+..++.++ |++. +.+.+++++|.|||+||++|+++.|.|+++++.+++...+..+|++. +..++++|+|.++
T Consensus 2 v~~l~~~~--~~~~----i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 75 (109)
T cd03002 2 VYELTPKN--FDKV----VHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGF 75 (109)
T ss_pred eEEcchhh--HHHH----HhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcC
Confidence 34556666 7776 56778899999999999999999999999999998877777778888 8899999999999
Q ss_pred CeEEEE-eCc-----eeEEEeCCCCHHHHHHHHH
Q 020846 137 PTLFLL-NSS-----MRVRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 137 Pti~l~-~g~-----~~~~~~G~~~~~~l~~~i~ 164 (320)
||+++| +|+ ....|.|.++.++|.+||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 999999 554 5678999999999999973
No 14
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.81 E-value=4e-19 Score=140.56 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=90.2
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHH--HH--hhHHHHHHHHHHc--CCCCeEEEeccCCChhHHHh
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF--SR--NFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSK 130 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~--Ck--~~~p~~~~la~~~--~~~~~v~~~~~~~~~~l~~~ 130 (320)
..+..++.++ |++. +.+++.+++++|||+||++ |+ .+.|.+++++.++ .+.+.++.+|++++++++++
T Consensus 9 ~~v~~lt~~n--F~~~----v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~ 82 (120)
T cd03065 9 DRVIDLNEKN--YKQV----LKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKK 82 (120)
T ss_pred cceeeCChhh--HHHH----HHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHH
Confidence 3455555555 8777 6788889999999999976 99 8899999999998 77788888999999999999
Q ss_pred CCCCccCeEEEE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 131 YGVHGFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 131 ~~V~~~Pti~l~-~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
|||+++||+++| +|+.+ .|.|.++.+.|.+||.+..
T Consensus 83 ~~I~~iPTl~lfk~G~~v-~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 83 LGLDEEDSIYVFKDDEVI-EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cCCccccEEEEEECCEEE-EeeCCCCHHHHHHHHHHHh
Confidence 999999999999 77755 4999999999999998764
No 15
>PTZ00102 disulphide isomerase; Provisional
Probab=99.80 E-value=7.3e-19 Score=171.62 Aligned_cols=112 Identities=22% Similarity=0.479 Sum_probs=95.9
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccCCChhHHHhCCC
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGV 133 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~V 133 (320)
..+..++.++ |++. .+.++.++|.|||+||++|+++.|.|+++++.+.+ .+.++.+||+.+..+|++|+|
T Consensus 32 ~~v~~l~~~~--f~~~-----i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i 104 (477)
T PTZ00102 32 EHVTVLTDST--FDKF-----ITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV 104 (477)
T ss_pred CCcEEcchhh--HHHH-----HhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC
Confidence 3456666666 8877 35678999999999999999999999999987753 467788899999999999999
Q ss_pred CccCeEEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCCCCCCCC
Q 020846 134 HGFPTLFLL-NSSMRVRYHGSRTLDSLVAFYSDVTGMNTASLDK 176 (320)
Q Consensus 134 ~~~Pti~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~ 176 (320)
.++||+++| +|+.. +|.|.++.+.|.+|+.+.+++.+..++.
T Consensus 105 ~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~ 147 (477)
T PTZ00102 105 RGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVES 147 (477)
T ss_pred CcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecC
Confidence 999999999 55554 9999999999999999999998887763
No 16
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.80 E-value=4.7e-19 Score=135.17 Aligned_cols=86 Identities=22% Similarity=0.388 Sum_probs=79.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCHH
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 157 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~~ 157 (320)
+.+++++|+|||+||++|+.+.|.++++++.+++...+..+|++.++.++++|+|.++||+++| +|+...++.|..+.+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~ 89 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEE 89 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHH
Confidence 3478999999999999999999999999999988777778899999999999999999999999 788888999999999
Q ss_pred HHHHHHH
Q 020846 158 SLVAFYS 164 (320)
Q Consensus 158 ~l~~~i~ 164 (320)
+|.+||+
T Consensus 90 ~l~~~l~ 96 (96)
T cd02956 90 QLRQMLD 96 (96)
T ss_pred HHHHHhC
Confidence 9999873
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=6.6e-19 Score=135.69 Aligned_cols=97 Identities=21% Similarity=0.464 Sum_probs=82.1
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCccC
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~~P 137 (320)
|..++.++ |++. + + +. ++|+|||+||++|+.+.|.|+++++.+++ .+.++.+|+++++.++++|+|+++|
T Consensus 3 v~~l~~~~--f~~~----~-~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 73 (101)
T cd02994 3 VVELTDSN--WTLV----L-E-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALP 73 (101)
T ss_pred eEEcChhh--HHHH----h-C-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccC
Confidence 45556555 8876 2 2 33 78999999999999999999999998865 4677788999999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHHHH
Q 020846 138 TLFLL-NSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
|+++| +|+ +.+|.|.++.++|.+|+++
T Consensus 74 t~~~~~~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 74 TIYHAKDGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEEeCCCC-EEEecCCCCHHHHHHHHhC
Confidence 99999 665 5899999999999999863
No 18
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.8e-19 Score=171.18 Aligned_cols=127 Identities=25% Similarity=0.413 Sum_probs=104.9
Q ss_pred hhHHHHhhhhcCCCccccc------CCCC-CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHH
Q 020846 34 ESVTDSIFRFQDSFCPISC------NDFQ-DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~------~~~~-~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~l 106 (320)
.++..|+.++++|+..|.. ++++ .||+++.+++ |++. +.+.++-|||.||||||+||+++.|+|++|
T Consensus 336 ~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgkn--fd~i----v~de~KdVLvEfyAPWCgHCk~laP~~eeL 409 (493)
T KOG0190|consen 336 ENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKN--FDDI----VLDEGKDVLVEFYAPWCGHCKALAPIYEEL 409 (493)
T ss_pred HHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecC--HHHH----hhccccceEEEEcCcccchhhhhhhHHHHH
Confidence 3588899999999998765 3334 6899999999 6666 789999999999999999999999999999
Q ss_pred HHHcCCC--CeEEEeccCCChhHHHhCCCCccCeEEEE-eC--ceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 107 SSLYSSI--PHFAIEESAIRPSILSKYGVHGFPTLFLL-NS--SMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 107 a~~~~~~--~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g--~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
++.|++. +.++..|.+.|. .....|.++|||++| .| ..++.|.|.|+.++|..|+.+...
T Consensus 410 Ae~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 410 AEKYKDDENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred HHHhcCCCCcEEEEecccccc--CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999974 445555554433 344577889999999 33 468999999999999999998876
No 19
>PRK09381 trxA thioredoxin; Provisional
Probab=99.79 E-value=1.6e-18 Score=135.50 Aligned_cols=104 Identities=21% Similarity=0.361 Sum_probs=92.3
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccC
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~P 137 (320)
.+..+++++ |++. +.+.+++++|+||++||++|+.+.|.++++++.+.+...+..+|++.++.++++|+|+++|
T Consensus 4 ~v~~~~~~~--~~~~----v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 77 (109)
T PRK09381 4 KIIHLTDDS--FDTD----VLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIP 77 (109)
T ss_pred cceeeChhh--HHHH----HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCC
Confidence 356666666 7765 3567889999999999999999999999999999887788888999999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 138 TLFLL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
|+++| +|+...++.|..+.++|.++|..++
T Consensus 78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999 8888889999999999999998865
No 20
>PHA02278 thioredoxin-like protein
Probab=99.79 E-value=8.8e-19 Score=135.33 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=73.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC----hhHHHhCCCCccCeEEEE-eCceeEEEeCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLL-NSSMRVRYHGS 153 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~ 153 (320)
+.+++++|+|||+||++|+.+.|.++++++++.+...+..+|.+.+ +.++++|+|.++||+++| +|+.+.+..|.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~ 91 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQ 91 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCC
Confidence 5789999999999999999999999999988655445566677664 689999999999999999 88889999999
Q ss_pred CCHHHHHHH
Q 020846 154 RTLDSLVAF 162 (320)
Q Consensus 154 ~~~~~l~~~ 162 (320)
.+.+.|.++
T Consensus 92 ~~~~~l~~~ 100 (103)
T PHA02278 92 VTPMQLQEL 100 (103)
T ss_pred CCHHHHHhh
Confidence 998888764
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4e-19 Score=157.32 Aligned_cols=106 Identities=21% Similarity=0.411 Sum_probs=97.0
Q ss_pred EEeCcchhHHHHHhHHhhcC-CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeE
Q 020846 61 VIEGDEVSLQMALNMVHKNS-HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL 139 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~-~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti 139 (320)
+++.++.||++. ++.++ .+||+|+||||||++|+.+.|.+++++.+|+|...++.+|||.++.++.+|||+++||+
T Consensus 25 I~dvT~anfe~~---V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 25 IKDVTEANFEQE---VIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ceechHhHHHHH---HHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 556666669888 33444 45999999999999999999999999999999999999999999999999999999999
Q ss_pred EEE-eCceeEEEeCCCCHHHHHHHHHHhhCC
Q 020846 140 FLL-NSSMRVRYHGSRTLDSLVAFYSDVTGM 169 (320)
Q Consensus 140 ~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~ 169 (320)
+.| +|+++..|.|....+.|.+|+.++.+.
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 999 999999999999999999999999987
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.79 E-value=9.4e-19 Score=137.44 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=79.4
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCH
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~ 156 (320)
+.+++++|+||||||++|+.+.|.++++++++++ ...+..+|++.++.++++++|.++||+++| +|+...++.|..+.
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 3679999999999999999999999999999976 366777899999999999999999999999 78888888999999
Q ss_pred HHHHHHHHH
Q 020846 157 DSLVAFYSD 165 (320)
Q Consensus 157 ~~l~~~i~~ 165 (320)
+.|.+||++
T Consensus 102 ~~l~~~i~~ 110 (111)
T cd02963 102 QHVVDFVRK 110 (111)
T ss_pred HHHHHHHhc
Confidence 999999976
No 23
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.79 E-value=1.4e-18 Score=134.10 Aligned_cols=98 Identities=24% Similarity=0.482 Sum_probs=85.4
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeE
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTL 139 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti 139 (320)
..++..+ |++. +.+.+++++|.||++||++|+++.|.|+++++++++...+...|++++++++++|+|+++||+
T Consensus 3 ~~l~~~~--~~~~----i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 76 (103)
T cd03001 3 VELTDSN--FDKK----VLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTI 76 (103)
T ss_pred EEcCHHh--HHHH----HhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEE
Confidence 3444444 7666 456677899999999999999999999999999988888888899999999999999999999
Q ss_pred EEE-eC-ceeEEEeCCCCHHHHHHHH
Q 020846 140 FLL-NS-SMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 140 ~l~-~g-~~~~~~~G~~~~~~l~~~i 163 (320)
++| +| .....|.|.++.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 999 55 5678999999999999986
No 24
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.78 E-value=9.8e-19 Score=136.41 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=70.6
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~ 155 (320)
+.+++++|+|||+||++|+.|.|.++++++++++.+.+..+|.+++++++++|+|.++||+++| +|+.+.+..|..+
T Consensus 12 ~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~ 89 (114)
T cd02954 12 EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGN 89 (114)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCC
Confidence 3678999999999999999999999999999998877778899999999999999999999999 8888888877544
No 25
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.78 E-value=1.1e-18 Score=134.32 Aligned_cols=96 Identities=25% Similarity=0.498 Sum_probs=82.3
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccCCChhHHHhCCCCcc
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGF 136 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~V~~~ 136 (320)
..+++++ |++. + ++ ++++|.|||+||++|+.+.|.++++++++++ ...+..+||+.+..+|++|+|.++
T Consensus 3 ~~l~~~~--f~~~----~-~~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~ 74 (102)
T cd03005 3 LELTEDN--FDHH----I-AE-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGY 74 (102)
T ss_pred eECCHHH--HHHH----h-hc-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcC
Confidence 3445555 7777 3 23 3599999999999999999999999999976 566777899999999999999999
Q ss_pred CeEEEE-eCceeEEEeCCCCHHHHHHHH
Q 020846 137 PTLFLL-NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 137 Pti~l~-~g~~~~~~~G~~~~~~l~~~i 163 (320)
||+++| +|+.+.+|.|.++.++|.+||
T Consensus 75 Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 75 PTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 999999 788888999999999998875
No 26
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.78 E-value=5.4e-19 Score=155.31 Aligned_cols=116 Identities=16% Similarity=0.354 Sum_probs=98.5
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~ 155 (320)
+++..|+|+||||||+||+++.|+|+++.-++++ -++++..||...+.+++++||+|||||.+|+|...+.|.|+++
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~ 120 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGRE 120 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCcc
Confidence 5678999999999999999999999999988876 4788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCChhh-hccCCCccccccc
Q 020846 156 LDSLVAFYSDVTGMNTASLDKISPDK-VGKASNHEKHNNT 194 (320)
Q Consensus 156 ~~~l~~~i~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~f~ 194 (320)
.+.|++|..+..+.-+..++..+.+. .++..+..+..|+
T Consensus 121 Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~ 160 (468)
T KOG4277|consen 121 KDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFF 160 (468)
T ss_pred HHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEE
Confidence 99999999999998888887544332 2333444444444
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=6.5e-18 Score=137.96 Aligned_cols=102 Identities=19% Similarity=0.368 Sum_probs=88.8
Q ss_pred EEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEE
Q 020846 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF 140 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~ 140 (320)
+++.+..+|++. .+.+++++|+|||+||++|+.+.|.|+++++++.+...+..+|.+++++++++|+|.++||++
T Consensus 37 ~i~~~~~~~~~~-----i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 37 VINATGETLDKL-----LQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CEEcCHHHHHHH-----HhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 344455558777 456899999999999999999999999999998876666677889999999999999999999
Q ss_pred EE-eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 141 LL-NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 141 l~-~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+| +|+.+.++.|..+.+.|.+|+++.+
T Consensus 112 i~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 99 8888889999999999999998763
No 28
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.77 E-value=3e-18 Score=132.22 Aligned_cols=99 Identities=27% Similarity=0.536 Sum_probs=84.9
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccCCChhHHHhCCCCc
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHG 135 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~~l~~~~~V~~ 135 (320)
||..+++++ |++. +.+.+++++|+||++||++|+.+.|.++++++.+++ ...++.+|++.+ +++..+++.+
T Consensus 1 ~v~~l~~~~--f~~~----i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~ 73 (104)
T cd02995 1 PVKVVVGKN--FDEV----VLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG 73 (104)
T ss_pred CeEEEchhh--hHHH----HhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC
Confidence 467778787 7666 566678999999999999999999999999999987 366677788776 6888999999
Q ss_pred cCeEEEE-eCc--eeEEEeCCCCHHHHHHHH
Q 020846 136 FPTLFLL-NSS--MRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 136 ~Pti~l~-~g~--~~~~~~G~~~~~~l~~~i 163 (320)
+||+++| +|+ ...+|.|..+.++|.+||
T Consensus 74 ~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 74 FPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 9999999 665 678999999999999885
No 29
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=5e-18 Score=131.61 Aligned_cols=88 Identities=30% Similarity=0.566 Sum_probs=77.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~ 155 (320)
..+++++|.|||+||++|+.+.|.++++++++++ ...+..+|++.++.++++|+|.++||+++|+++...+|.|.++
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~~~~G~~~ 92 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRT 92 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCceeecCCCC
Confidence 3567999999999999999999999999999853 3566667898899999999999999999996556788999999
Q ss_pred HHHHHHHHHHh
Q 020846 156 LDSLVAFYSDV 166 (320)
Q Consensus 156 ~~~l~~~i~~~ 166 (320)
.++|.+|+++.
T Consensus 93 ~~~l~~~~~~~ 103 (104)
T cd03000 93 KDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 30
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.76 E-value=4.1e-18 Score=133.29 Aligned_cols=101 Identities=22% Similarity=0.449 Sum_probs=81.8
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC-CeEEEeccCC-ChhHHH-hCCCCc
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAI-RPSILS-KYGVHG 135 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~~-~~~l~~-~~~V~~ 135 (320)
|..++.++ |+.+... .+.+++++|.|||+||++|+++.|.|+++++.+++. ..+..+|++. +..++. .++|++
T Consensus 3 v~~~~~~~--~~~~~~~--~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~ 78 (109)
T cd02993 3 VVTLSRAE--IEALAKG--ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS 78 (109)
T ss_pred ceeccHHH--HHHHHhh--hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc
Confidence 44555555 7777211 246789999999999999999999999999999863 6677778887 577886 599999
Q ss_pred cCeEEEE-e-CceeEEEeCC-CCHHHHHHHH
Q 020846 136 FPTLFLL-N-SSMRVRYHGS-RTLDSLVAFY 163 (320)
Q Consensus 136 ~Pti~l~-~-g~~~~~~~G~-~~~~~l~~~i 163 (320)
+||+++| + +.....|.|. ++.++|..||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999999 4 4578899995 8999999885
No 31
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=6.6e-18 Score=130.55 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=77.8
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCccCeEEEE-eCce
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM 146 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~ 146 (320)
|+++ .+++++++|+|||+||++|+.+.|.++++++++++ ...+..+|.+ +++++++|+|+++||+++| +|+.
T Consensus 10 ~~~~-----i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 10 WEEL-----LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred HHHH-----HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence 6666 35789999999999999999999999999999975 4567777887 7889999999999999999 7877
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 020846 147 RVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 147 ~~~~~G~~~~~~l~~~i~~ 165 (320)
+.+..|. +.+.|.++|++
T Consensus 84 ~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 84 VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEecC-ChHHHHHHHhh
Confidence 8888885 88899988875
No 32
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=2.6e-18 Score=134.48 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=80.1
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEc--CCCH---HHHhhHHHHHHHHHHcCCCCeEEEecc-----CCChhHHHhC
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYA--SWCP---FSRNFRPSFSVLSSLYSSIPHFAIEES-----AIRPSILSKY 131 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya--~wC~---~Ck~~~p~~~~la~~~~~~~~v~~~~~-----~~~~~l~~~~ 131 (320)
++.+..||++. .+.++.+||.||| |||+ +|++++|.+.+.+.. +.++.+|| .++.+||++|
T Consensus 4 v~L~~~nF~~~-----v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 4 VDLDTVTFYKV-----IPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred eECChhhHHHH-----HhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHh
Confidence 34444558888 4677899999999 9999 899998888777654 66888888 4578899999
Q ss_pred CCC--ccCeEEEE-eCc--eeEEEeCC-CCHHHHHHHHHHh
Q 020846 132 GVH--GFPTLFLL-NSS--MRVRYHGS-RTLDSLVAFYSDV 166 (320)
Q Consensus 132 ~V~--~~Pti~l~-~g~--~~~~~~G~-~~~~~l~~~i~~~ 166 (320)
+|+ +||||++| +|. .+..|.|. ++.+.|++||.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999 664 56899997 9999999999876
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.76 E-value=6e-18 Score=129.98 Aligned_cols=94 Identities=28% Similarity=0.541 Sum_probs=83.9
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccCCChhHHHhCCCCccCeEEEE-eCc
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS 145 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~ 145 (320)
|++. + .++++++|.||++||++|+.+.|.++++++.+++ ...+..+|+++++.++++|+|.++|++++| +|+
T Consensus 6 ~~~~----~-~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~ 80 (102)
T TIGR01126 6 FDDI----V-LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK 80 (102)
T ss_pred HHHH----h-ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence 6666 3 4788999999999999999999999999999987 577788899999999999999999999999 565
Q ss_pred eeEEEeCCCCHHHHHHHHHHhh
Q 020846 146 MRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 146 ~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
.+.+|.|..+.++|.+||++++
T Consensus 81 ~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 81 KPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred cceeecCCCCHHHHHHHHHhcC
Confidence 5889999999999999998753
No 34
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.76 E-value=7.3e-18 Score=130.13 Aligned_cols=97 Identities=23% Similarity=0.520 Sum_probs=82.1
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEeccCC--ChhHHHhCCCCc
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI--RPSILSKYGVHG 135 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~--~~~l~~~~~V~~ 135 (320)
..++..+ |++. .+++++++|.|||+||++|+++.|.++++++.++ +...+...|++. ++.++++++|++
T Consensus 3 ~~l~~~~--~~~~-----~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 75 (104)
T cd02997 3 VHLTDED--FRKF-----LKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG 75 (104)
T ss_pred EEechHh--HHHH-----HhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc
Confidence 4444444 7776 3456799999999999999999999999999987 445566668877 899999999999
Q ss_pred cCeEEEE-eCceeEEEeCCCCHHHHHHHH
Q 020846 136 FPTLFLL-NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 136 ~Pti~l~-~g~~~~~~~G~~~~~~l~~~i 163 (320)
+||+++| +|+.+.+|.|..+.+.|.+||
T Consensus 76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 76 FPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred ccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 9999999 788888999999999999875
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.75 E-value=1.7e-17 Score=128.46 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=70.3
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC---hhHHHhCCCCccCeEEEE-eCceeEEEeCCCC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR---PSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~---~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~ 155 (320)
.+++++|+|||+||++|+.+.|.+++++++++++ .+..+|.+++ .+++++|+|+++||+++| +|+.+.++.|. .
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v-~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~ 91 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDV-VFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGI-G 91 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCC-EEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC-C
Confidence 4899999999999999999999999999999554 4444567666 489999999999999999 88888899985 4
Q ss_pred HHHHHHHHHH
Q 020846 156 LDSLVAFYSD 165 (320)
Q Consensus 156 ~~~l~~~i~~ 165 (320)
.++|.+.+..
T Consensus 92 ~~~l~~~~~~ 101 (103)
T cd02985 92 PDELIGDVLY 101 (103)
T ss_pred HHHHHHHHHh
Confidence 5677766654
No 36
>PTZ00102 disulphide isomerase; Provisional
Probab=99.75 E-value=1.8e-17 Score=161.81 Aligned_cols=134 Identities=19% Similarity=0.333 Sum_probs=114.2
Q ss_pred CCchhHHHHhhhhcCCCccccc------CCCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHH
Q 020846 31 CPTESVTDSIFRFQDSFCPISC------NDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFS 104 (320)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~ 104 (320)
...+++.+|+..+..|+..++. +....++..+++++ |++. +.+++++++|+|||+||++|+.+.|.|+
T Consensus 325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~--f~~~----v~~~~k~vlv~f~a~wC~~C~~~~p~~~ 398 (477)
T PTZ00102 325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNT--FEEI----VFKSDKDVLLEIYAPWCGHCKNLEPVYN 398 (477)
T ss_pred CCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccc--hHHH----HhcCCCCEEEEEECCCCHHHHHHHHHHH
Confidence 4567899999999999888755 23355688899999 7766 5678899999999999999999999999
Q ss_pred HHHHHcCC--CCeEEEeccCCChhHHHhCCCCccCeEEEE-eCc-eeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 105 VLSSLYSS--IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 105 ~la~~~~~--~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~-~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
++++.+++ .+.++..|++.+..++++++|+++||+++| +|+ ...+|.|.++.++|.+||+++....
T Consensus 399 ~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 399 ELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred HHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCC
Confidence 99999875 456777789999999999999999999999 454 4568999999999999999988653
No 37
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.74 E-value=1.4e-17 Score=161.55 Aligned_cols=149 Identities=23% Similarity=0.399 Sum_probs=119.2
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC---CeEEEeccCCChhHHHhCCCCc
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHG 135 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~---~~v~~~~~~~~~~l~~~~~V~~ 135 (320)
|..++.++ |+++ .+++++++|.|||+||++|+++.|.++++++.+.+. +.++.+||+.+.++|++|+|.+
T Consensus 3 v~~l~~~~--~~~~-----i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 75 (462)
T TIGR01130 3 VLVLTKDN--FDDF-----IKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG 75 (462)
T ss_pred ceECCHHH--HHHH-----HhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc
Confidence 44455555 8777 356789999999999999999999999999987643 6777889999999999999999
Q ss_pred cCeEEEE-eCce-eEEEeCCCCHHHHHHHHHHhhCCCCCCCC-CCChhhhccCCCcccccccCCCcCCcccCCCcccccC
Q 020846 136 FPTLFLL-NSSM-RVRYHGSRTLDSLVAFYSDVTGMNTASLD-KISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQ 212 (320)
Q Consensus 136 ~Pti~l~-~g~~-~~~~~G~~~~~~l~~~i~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~ 212 (320)
+||+++| +|+. ..+|.|.++.+.|.+|+.+.+++.+..++ .++++.++......++.|+.+ .-...
T Consensus 76 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~---------~~~~~-- 144 (462)
T TIGR01130 76 YPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKD---------LDSEL-- 144 (462)
T ss_pred ccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECC---------CCcHH--
Confidence 9999999 6766 78999999999999999999998887775 677888887755555555532 11233
Q ss_pred hHHHHHHHHHHHH
Q 020846 213 QETYLALATAFVL 225 (320)
Q Consensus 213 ~~~~~~la~~f~~ 225 (320)
...|.++|..+..
T Consensus 145 ~~~~~~~a~~~~~ 157 (462)
T TIGR01130 145 NDTFLSVAEKLRD 157 (462)
T ss_pred HHHHHHHHHHhhh
Confidence 5777788877653
No 38
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.8e-17 Score=127.14 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=73.9
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCH
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~ 156 (320)
...+++++|+|||+|||+|+.+.|.+++|+.+|++ ..+..+|.|+..+++++++|+..||+++| +|+.+.++.|....
T Consensus 18 ~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 18 EAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred hCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 45579999999999999999999999999999999 55555577779999999999999999999 88888999986543
Q ss_pred HHHHHHHHH
Q 020846 157 DSLVAFYSD 165 (320)
Q Consensus 157 ~~l~~~i~~ 165 (320)
.+.+.+.+
T Consensus 97 -~l~~~i~~ 104 (106)
T KOG0907|consen 97 -ELEKKIAK 104 (106)
T ss_pred -HHHHHHHh
Confidence 77776654
No 39
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.73 E-value=3.2e-17 Score=127.08 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=84.7
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCC--CHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccC
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASW--CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~w--C~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~P 137 (320)
..++..+ |++. ...+++++|.|||+| ||+|+.+.|.+++++++|++...+..+|.++++.++.+|+|+++|
T Consensus 13 ~~~~~~~--~~~~-----~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIP 85 (111)
T cd02965 13 PRVDAAT--LDDW-----LAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTP 85 (111)
T ss_pred ccccccc--HHHH-----HhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCC
Confidence 3456666 8866 367889999999997 999999999999999999998888888999999999999999999
Q ss_pred eEEEE-eCceeEEEeCCCCHHHHHH
Q 020846 138 TLFLL-NSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 138 ti~l~-~g~~~~~~~G~~~~~~l~~ 161 (320)
|+++| +|+.+.++.|..+.+++..
T Consensus 86 Tli~fkdGk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 86 ALLFFRDGRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred EEEEEECCEEEEEEeCccCHHHHhh
Confidence 99999 8999999999999888753
No 40
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.73 E-value=8.9e-17 Score=132.49 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=75.9
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCc
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHG 135 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~ 135 (320)
..+..++.++ |++. +..+.+++++|+|||+||++|+.+.|.++++++++++ ...+..+|++++++++++|+|++
T Consensus 28 ~~v~~l~~~~--f~~~---l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~ 102 (152)
T cd02962 28 EHIKYFTPKT--LEEE---LERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVST 102 (152)
T ss_pred CccEEcCHHH--HHHH---HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCcee
Confidence 3455556555 7776 2224567999999999999999999999999999975 36677779999999999999988
Q ss_pred ------cCeEEEE-eCceeEEEeC
Q 020846 136 ------FPTLFLL-NSSMRVRYHG 152 (320)
Q Consensus 136 ------~Pti~l~-~g~~~~~~~G 152 (320)
+||+++| +|+++.++.|
T Consensus 103 ~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 103 SPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCcCCCCEEEEEECCEEEEEEec
Confidence 9999999 8999999987
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=2.6e-17 Score=127.09 Aligned_cols=98 Identities=29% Similarity=0.570 Sum_probs=83.0
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEeccCC-ChhHHHhCCCCcc
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAI-RPSILSKYGVHGF 136 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~-~~~l~~~~~V~~~ 136 (320)
..+++++ |++. +.+.+++++|.|||+||++|+++.|.|+++++.++ +...+..+|++. ++.++++|+|.++
T Consensus 3 ~~l~~~~--~~~~----~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~ 76 (105)
T cd02998 3 VELTDSN--FDKV----VGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGF 76 (105)
T ss_pred EEcchhc--HHHH----hcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCc
Confidence 4455555 7666 45566799999999999999999999999999987 345666678888 8999999999999
Q ss_pred CeEEEE-eC-ceeEEEeCCCCHHHHHHHH
Q 020846 137 PTLFLL-NS-SMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 137 Pti~l~-~g-~~~~~~~G~~~~~~l~~~i 163 (320)
||+++| +| +....|.|.++.++|.+||
T Consensus 77 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 77 PTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999999 44 6788999999999999885
No 42
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.72 E-value=1.1e-16 Score=131.19 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=84.0
Q ss_pred CcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC--CChhHHHhCCCCccCeEEE
Q 020846 64 GDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKYGVHGFPTLFL 141 (320)
Q Consensus 64 ~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~--~~~~l~~~~~V~~~Pti~l 141 (320)
.+...|+++ ...+++++|+|||+||++|+.+.|.+++++++|.+...+..++.+ ....++++|+|.++||+++
T Consensus 8 ~~~~~~~~a-----~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~ 82 (142)
T cd02950 8 ASSTPPEVA-----LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVF 82 (142)
T ss_pred hccCCHHHH-----HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEE
Confidence 334447666 467899999999999999999999999999999764444443444 3468899999999999999
Q ss_pred E--eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 142 L--NSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 142 ~--~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
| +|+.+.++.|..+.++|.++|++.+...
T Consensus 83 ~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 83 LDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred ECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9 5888889999999999999999988644
No 43
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.72 E-value=1.2e-16 Score=129.48 Aligned_cols=97 Identities=11% Similarity=0.156 Sum_probs=82.8
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEE-EE-eCc-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLF-LL-NSS- 145 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~-l~-~g~- 145 (320)
|++. +....+++++|+|||+||++|+.+.|.++++++++++...+..+|.|++++++++|+|++.||++ +| +|+
T Consensus 14 ~d~~---I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~ 90 (142)
T PLN00410 14 VDQA---ILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHI 90 (142)
T ss_pred HHHH---HHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeE
Confidence 6666 22246789999999999999999999999999999998888888999999999999999887777 66 676
Q ss_pred eeEEEeC--------CCCHHHHHHHHHHhhC
Q 020846 146 MRVRYHG--------SRTLDSLVAFYSDVTG 168 (320)
Q Consensus 146 ~~~~~~G--------~~~~~~l~~~i~~~~~ 168 (320)
.+.+..| ..+.++|++-++....
T Consensus 91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 91 MIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 6677778 5788899988887764
No 44
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.71 E-value=9.4e-17 Score=122.87 Aligned_cols=91 Identities=26% Similarity=0.402 Sum_probs=82.0
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCC
Q 020846 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (320)
Q Consensus 77 ~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~ 155 (320)
+.+.+++++|.||++||++|+.+.|.++++++.+++...+..+|++.++.++++|+|.++||+++| +|+....+.|..+
T Consensus 10 ~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~ 89 (101)
T TIGR01068 10 IASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALP 89 (101)
T ss_pred HhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCC
Confidence 445567999999999999999999999999999987677777799999999999999999999999 7888888999999
Q ss_pred HHHHHHHHHHhh
Q 020846 156 LDSLVAFYSDVT 167 (320)
Q Consensus 156 ~~~l~~~i~~~~ 167 (320)
.+.+.++|++.+
T Consensus 90 ~~~l~~~l~~~~ 101 (101)
T TIGR01068 90 KAALKQLINKNL 101 (101)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 45
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.70 E-value=2.4e-16 Score=120.62 Aligned_cols=89 Identities=17% Similarity=0.310 Sum_probs=80.9
Q ss_pred HhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCC
Q 020846 76 VHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSR 154 (320)
Q Consensus 76 ~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~ 154 (320)
.+.+.+++++|.||++||+.|+.+.|.++++++++.+...+..+|.+++++++++++|.++||+++| +|+.+.++.|..
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 3567889999999999999999999999999999987666777788899999999999999999999 888889999999
Q ss_pred CHHHHHHHHH
Q 020846 155 TLDSLVAFYS 164 (320)
Q Consensus 155 ~~~~l~~~i~ 164 (320)
+.++|.++++
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999998873
No 46
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=2.7e-16 Score=123.84 Aligned_cols=89 Identities=18% Similarity=0.230 Sum_probs=73.5
Q ss_pred CccEEEeCcchhHHHHHhHHhhcC--CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCC
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNS--HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH 134 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~--~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~ 134 (320)
+.+..++.++ |.+. +.+. +++++|+||||||++|+.+.|.+++++++++++. +..+|++++ .++++|+|.
T Consensus 4 g~v~~i~~~~--f~~~----i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~-f~~vd~~~~-~l~~~~~i~ 75 (113)
T cd02957 4 GEVREISSKE--FLEE----VTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETK-FVKINAEKA-FLVNYLDIK 75 (113)
T ss_pred ceEEEEcHHH--HHHH----HHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcE-EEEEEchhh-HHHHhcCCC
Confidence 4456666655 7766 3444 4899999999999999999999999999998754 445577777 999999999
Q ss_pred ccCeEEEE-eCceeEEEeCC
Q 020846 135 GFPTLFLL-NSSMRVRYHGS 153 (320)
Q Consensus 135 ~~Pti~l~-~g~~~~~~~G~ 153 (320)
++||+++| +|+.+.++.|.
T Consensus 76 ~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 76 VLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred cCCEEEEEECCEEEEEEecH
Confidence 99999999 88888898874
No 47
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.69 E-value=4.3e-16 Score=122.62 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=72.7
Q ss_pred cEEEeC-cchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccC
Q 020846 59 VGVIEG-DEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 59 v~~l~~-~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~P 137 (320)
+..+.. ++ |++. ..++++++|+||++||++|+.+.|.+++++++++++ .+..+|.+++++++++|+|.++|
T Consensus 6 v~~i~~~~~--~~~~-----i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i-~f~~Vd~~~~~~l~~~~~v~~vP 77 (113)
T cd02989 6 YREVSDEKE--FFEI-----VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLET-KFIKVNAEKAPFLVEKLNIKVLP 77 (113)
T ss_pred eEEeCCHHH--HHHH-----HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCC-EEEEEEcccCHHHHHHCCCccCC
Confidence 444544 33 6666 356689999999999999999999999999999885 55556888999999999999999
Q ss_pred eEEEE-eCceeEEEeCC
Q 020846 138 TLFLL-NSSMRVRYHGS 153 (320)
Q Consensus 138 ti~l~-~g~~~~~~~G~ 153 (320)
|+++| +|+.+.++.|.
T Consensus 78 t~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 78 TVILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEEEECCEEEEEEECc
Confidence 99999 88888787763
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=3.1e-16 Score=119.40 Aligned_cols=90 Identities=32% Similarity=0.588 Sum_probs=78.8
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHc--CCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eC-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS- 144 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~--~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g- 144 (320)
|.+. ..++++++|.||++||++|+.+.|.++++++.+ .+...+..+|++.+..++++|+|.++||+++| ++
T Consensus 8 ~~~~-----i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 8 FDEL-----VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred HHHH-----HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCC
Confidence 6666 345559999999999999999999999999999 46677777799999999999999999999999 44
Q ss_pred ceeEEEeCCCCHHHHHHHH
Q 020846 145 SMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 145 ~~~~~~~G~~~~~~l~~~i 163 (320)
....+|.|..+.+++.+|+
T Consensus 83 ~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 83 KEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cccccCCCCcCHHHHHhhC
Confidence 6888999999999998874
No 49
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.7e-16 Score=149.50 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=129.8
Q ss_pred EEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEeccCCChhHHHhCCCCccCe
Q 020846 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
+.+....+|+.. +.+.+..++|.||+|||+||+.+.|.|++++..+. ..+.++..+++.+..++++++|.++||
T Consensus 146 v~~l~~~~~~~~----~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt 221 (383)
T KOG0191|consen 146 VFELTKDNFDET----VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPT 221 (383)
T ss_pred eEEccccchhhh----hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCce
Confidence 344444446665 66788999999999999999999999999999886 467777778888899999999999999
Q ss_pred EEEE-eCce-eEEEeCCCCHHHHHHHHHHhhCCC-----CCCCCCCC-hhhhc-c---------CCCcccccccCCCcCC
Q 020846 139 LFLL-NSSM-RVRYHGSRTLDSLVAFYSDVTGMN-----TASLDKIS-PDKVG-K---------ASNHEKHNNTEEESCP 200 (320)
Q Consensus 139 i~l~-~g~~-~~~~~G~~~~~~l~~~i~~~~~~~-----~~~l~~~~-~~~~~-~---------~~~~~~~~f~~~~~~~ 200 (320)
+.+| ++.. ...|.|.++.+.+..|+.+..+.. .......+ +.... . .....++.|++
T Consensus 222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----- 296 (383)
T KOG0191|consen 222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYA----- 296 (383)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhc-----
Confidence 9999 6666 778889999999999999998874 11111111 11111 1 11124556654
Q ss_pred cccCCCcccccChHHHHHHHHHH-------------------HHHHHHhhhchhHhhhhchh
Q 020846 201 FSWARSPENLLQQETYLALATAF-------------------VLLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 201 ~~wc~~c~~~~~~~~~~~la~~f-------------------~~~~~~i~~~Pti~~~~~~~ 243 (320)
+||+||... .|.|+..+... .|+...+.+||++.++..+.
T Consensus 297 -~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (383)
T KOG0191|consen 297 -PWCGHCGGF--APVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVRGYPTIKLYNYGK 355 (383)
T ss_pred -chhhccccc--chhHHHHHhccccccccceeeccccccccchhhHhhhhcCceeEeecccc
Confidence 999999999 99999998872 24777888888887776665
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.65 E-value=5.1e-16 Score=120.22 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=72.7
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCCCCeEEEeccCC----ChhHHHhCCCCccCeEEEEe---Ccee
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESAI----RPSILSKYGVHGFPTLFLLN---SSMR 147 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~~~~v~~~~~~~----~~~l~~~~~V~~~Pti~l~~---g~~~ 147 (320)
.+++++++|.|||+||++|+.+.|.+ +++++.+.+...+..+|.++ ...++++|+|.++||+++|+ |+.+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 46789999999999999999999988 68888887544444446555 57899999999999999993 6778
Q ss_pred EEEeCCCCHHHHHHHHH
Q 020846 148 VRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 148 ~~~~G~~~~~~l~~~i~ 164 (320)
.++.|..+.++|.++|+
T Consensus 88 ~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 88 LRLPGFLTADEFLEALE 104 (104)
T ss_pred cccccccCHHHHHHHhC
Confidence 89999999999998873
No 51
>PTZ00051 thioredoxin; Provisional
Probab=99.65 E-value=1.5e-15 Score=116.11 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=72.4
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCcee
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR 147 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~ 147 (320)
|++. .+.+++++|+||++||++|+.+.|.+++++++++++..+ .+|++++..++++|+|.++||+++| +|+..
T Consensus 11 ~~~~-----~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~-~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 11 FEST-----LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV-KVDVDELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred HHHH-----HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEE-EEECcchHHHHHHCCCceeeEEEEEeCCeEE
Confidence 5555 467789999999999999999999999999998875544 4578889999999999999999999 88888
Q ss_pred EEEeCCCCHHHHH
Q 020846 148 VRYHGSRTLDSLV 160 (320)
Q Consensus 148 ~~~~G~~~~~~l~ 160 (320)
.++.|. ..++|.
T Consensus 85 ~~~~G~-~~~~~~ 96 (98)
T PTZ00051 85 DTLLGA-NDEALK 96 (98)
T ss_pred EEEeCC-CHHHhh
Confidence 899986 445554
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.65 E-value=9.7e-16 Score=120.83 Aligned_cols=99 Identities=27% Similarity=0.430 Sum_probs=76.3
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC---CCeEEEeccC--CChhHHHhCC
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS---IPHFAIEESA--IRPSILSKYG 132 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~---~~~v~~~~~~--~~~~l~~~~~ 132 (320)
++..++.++ |++. +.+.+++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+||+ .+..++++|+
T Consensus 2 ~v~~l~~~~--f~~~----i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~ 75 (114)
T cd02992 2 PVIVLDAAS--FNSA----LLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFG 75 (114)
T ss_pred CeEECCHHh--HHHH----HhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCC
Confidence 355566666 7766 566678999999999999999999999999998753 5667777875 3678999999
Q ss_pred CCccCeEEEE-eCce----eEEEeCC-CCHHHHHHH
Q 020846 133 VHGFPTLFLL-NSSM----RVRYHGS-RTLDSLVAF 162 (320)
Q Consensus 133 V~~~Pti~l~-~g~~----~~~~~G~-~~~~~l~~~ 162 (320)
|+++||+++| ++.. -..|+|. +..+++.+.
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELREA 111 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence 9999999999 4432 2467776 666666543
No 53
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.65 E-value=1.7e-15 Score=115.47 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=69.5
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCHHHH
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSL 159 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~~~l 159 (320)
+++++|.||++||++|+++.|.++++++++.....+..+|+++.++++++|+|+++||+++| +|+...++.|. +.+.|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l 92 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKEL 92 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHH
Confidence 69999999999999999999999999999654555555688889999999999999999999 77777777774 56777
Q ss_pred HHHH
Q 020846 160 VAFY 163 (320)
Q Consensus 160 ~~~i 163 (320)
.+.|
T Consensus 93 ~~~~ 96 (97)
T cd02984 93 AKKV 96 (97)
T ss_pred HHhh
Confidence 6654
No 54
>PLN02309 5'-adenylylsulfate reductase
Probab=99.64 E-value=1.4e-15 Score=145.59 Aligned_cols=105 Identities=24% Similarity=0.448 Sum_probs=85.5
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC-CeEEEeccC-CChhHHH-hCCCC
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESA-IRPSILS-KYGVH 134 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~-~~~~l~~-~~~V~ 134 (320)
.|..++.++ |++++. ..+.+++++|+||||||++|+.|.|.|++++++|.+. +.+..+|++ .+..++. +|+|+
T Consensus 346 ~Vv~Lt~~n--fe~ll~--~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 346 NVVALSRAG--IENLLK--LENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CcEECCHHH--HHHHHH--hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc
Confidence 454455554 877722 1367899999999999999999999999999999764 667777888 7788886 69999
Q ss_pred ccCeEEEE-eC-ceeEEEeC-CCCHHHHHHHHHHh
Q 020846 135 GFPTLFLL-NS-SMRVRYHG-SRTLDSLVAFYSDV 166 (320)
Q Consensus 135 ~~Pti~l~-~g-~~~~~~~G-~~~~~~l~~~i~~~ 166 (320)
++||+++| +| .....|.| .++.++|+.||+..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999999 44 35778985 69999999999864
No 55
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.64 E-value=3.3e-16 Score=138.06 Aligned_cols=142 Identities=20% Similarity=0.371 Sum_probs=108.2
Q ss_pred hHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHc----C-CCCeEEEeccCCChhHHHhCCCCccCeEEEE
Q 020846 68 SLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLY----S-SIPHFAIEESAIRPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 68 ~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~----~-~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~ 142 (320)
|++.. .++...|+|.|||+||+.++.+.|+|++.|+.+ + +.+..+.+||+.+..|+.+|.|..|||+.+|
T Consensus 5 N~~~i-----l~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 5 NIDSI-----LDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred cHHHh-----hccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 35555 567899999999999999999999999998765 4 4678899999999999999999999999999
Q ss_pred -eCceeE-EEeCCCCHHHHHHHHHHhhCCCCCCCC-CCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHH
Q 020846 143 -NSSMRV-RYHGSRTLDSLVAFYSDVTGMNTASLD-KISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLAL 219 (320)
Q Consensus 143 -~g~~~~-~~~G~~~~~~l~~~i~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~l 219 (320)
||.... .|.|.|+.+.|.+||++.+...+.+.. ..++.......+..++.++...+.| + -+.+..+
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdsp--------e---y~~~~kv 148 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSP--------E---YDNLRKV 148 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCc--------h---HHHHHHH
Confidence 887765 899999999999999999987655442 3345555554455555554322221 1 3455666
Q ss_pred HHHHHH
Q 020846 220 ATAFVL 225 (320)
Q Consensus 220 a~~f~~ 225 (320)
|..+..
T Consensus 149 a~~lr~ 154 (375)
T KOG0912|consen 149 ASLLRD 154 (375)
T ss_pred HHHHhh
Confidence 766644
No 56
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=130.77 Aligned_cols=106 Identities=23% Similarity=0.351 Sum_probs=87.2
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCe
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
|.+++++. +|+..+ -....+.++|+|+|+||++|++++|.|+.|+.+|++.+++.+ |.|+.+..+..+||...||
T Consensus 3 Vi~v~~d~-df~~~l---s~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkV-dVd~c~~taa~~gV~amPT 77 (288)
T KOG0908|consen 3 VIVVNSDS-DFQREL---SAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKV-DVDECRGTAATNGVNAMPT 77 (288)
T ss_pred eEEecCcH-HHHHhh---hccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEE-eHHHhhchhhhcCcccCce
Confidence 45555544 466662 234568999999999999999999999999999999777766 6777889999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
+++| ||..+..+.|. +...|++.+.+++...
T Consensus 78 Fiff~ng~kid~~qGA-d~~gLe~kv~~~~sts 109 (288)
T KOG0908|consen 78 FIFFRNGVKIDQIQGA-DASGLEEKVAKYASTS 109 (288)
T ss_pred EEEEecCeEeeeecCC-CHHHHHHHHHHHhccC
Confidence 9999 88888888864 6788999999887654
No 57
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.64 E-value=2.9e-15 Score=145.38 Aligned_cols=133 Identities=23% Similarity=0.386 Sum_probs=109.9
Q ss_pred CCchhHHHHhhhhcCCCccccc------CCCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHH
Q 020846 31 CPTESVTDSIFRFQDSFCPISC------NDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFS 104 (320)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~ 104 (320)
...+.+.+|+..+..|+..|.. +..+.++..+++++ |++. +.+.+++++|+|||+||++|+.+.|.++
T Consensus 314 ~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~--f~~~----v~~~~~~vlv~f~a~wC~~C~~~~p~~~ 387 (462)
T TIGR01130 314 FSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKN--FDEI----VLDETKDVLVEFYAPWCGHCKNLAPIYE 387 (462)
T ss_pred CCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcC--HHHH----hccCCCeEEEEEECCCCHhHHHHHHHHH
Confidence 4567899999999999988754 22345788889999 7766 6678899999999999999999999999
Q ss_pred HHHHHcCC---CCeEEEeccCCChhHHHhCCCCccCeEEEE-eCc--eeEEEeCCCCHHHHHHHHHHhhCCCC
Q 020846 105 VLSSLYSS---IPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS--MRVRYHGSRTLDSLVAFYSDVTGMNT 171 (320)
Q Consensus 105 ~la~~~~~---~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~--~~~~~~G~~~~~~l~~~i~~~~~~~~ 171 (320)
++++.+.+ .+.++..|++.+. +.. ++|.++||+++| +|+ .+.+|.|.++.++|.+||.++...+.
T Consensus 388 ~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 388 ELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred HHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 99999987 5677777887654 444 999999999999 444 35789999999999999999886543
No 58
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.63 E-value=2.2e-15 Score=144.25 Aligned_cols=104 Identities=22% Similarity=0.415 Sum_probs=82.4
Q ss_pred EEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC-CeEEEeccCCCh-hHH-HhCCCCccC
Q 020846 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI-PHFAIEESAIRP-SIL-SKYGVHGFP 137 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~-~~v~~~~~~~~~-~l~-~~~~V~~~P 137 (320)
+++.+..||++.++ +.+.+++++|+||||||++|+.+.|.|++++++|.+. +.+..+|++.+. .++ ++|+|.++|
T Consensus 353 Vv~L~~~nf~~~v~--~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 353 VVSLSRPGIENLLK--LEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred eEECCHHHHHHHHh--hhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 34444445888721 1357889999999999999999999999999999764 567767887653 454 789999999
Q ss_pred eEEEE-eCc-eeEEEe-CCCCHHHHHHHHHHh
Q 020846 138 TLFLL-NSS-MRVRYH-GSRTLDSLVAFYSDV 166 (320)
Q Consensus 138 ti~l~-~g~-~~~~~~-G~~~~~~l~~~i~~~ 166 (320)
|+++| +|. ....|. |.++.+.|..||+..
T Consensus 431 Tii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 431 TILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred eEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 99999 553 567897 589999999999753
No 59
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.63 E-value=3.4e-15 Score=117.54 Aligned_cols=89 Identities=19% Similarity=0.257 Sum_probs=76.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCce--eEEEeCCCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM--RVRYHGSRT 155 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~--~~~~~G~~~ 155 (320)
..+..++|.|||+||++|+.+.|.++++++.+ +...+..+|.+++++++.+|+|.++||+++| +|+. ..++.|..+
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~ 98 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPA 98 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCc
Confidence 45677999999999999999999999999988 4455666788899999999999999999999 4433 338999999
Q ss_pred HHHHHHHHHHhhC
Q 020846 156 LDSLVAFYSDVTG 168 (320)
Q Consensus 156 ~~~l~~~i~~~~~ 168 (320)
.+++.++|...+.
T Consensus 99 ~~el~~~i~~i~~ 111 (113)
T cd02975 99 GYEFASLIEDIVR 111 (113)
T ss_pred hHHHHHHHHHHHh
Confidence 9999999988764
No 60
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.61 E-value=4.8e-15 Score=114.85 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=71.3
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCcee-EEE------
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMR-VRY------ 150 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~-~~~------ 150 (320)
..+++++|.|+|+||++|+.+.|.+++++++|++...+..+|.|+.+++++.|+|.+.||+++| +|+.+ .+|
T Consensus 12 ~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~ 91 (114)
T cd02986 12 TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHT 91 (114)
T ss_pred cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCc
Confidence 3589999999999999999999999999999988677777799999999999999999999988 66543 232
Q ss_pred --eCC-CCHHHHHHHHHH
Q 020846 151 --HGS-RTLDSLVAFYSD 165 (320)
Q Consensus 151 --~G~-~~~~~l~~~i~~ 165 (320)
++. .+.+++++.++-
T Consensus 92 k~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 92 KFVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEEcCchhHHHHHHHH
Confidence 222 245677766654
No 61
>PTZ00062 glutaredoxin; Provisional
Probab=99.61 E-value=1.4e-15 Score=131.04 Aligned_cols=131 Identities=9% Similarity=0.099 Sum_probs=95.0
Q ss_pred hhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCC
Q 020846 77 HKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRT 155 (320)
Q Consensus 77 ~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~ 155 (320)
+..+.+.++++|+|+||++|+.+.|.+++|+++|+++.++.+ +.+ |+|.++||+++| +|+.+.++.|. +
T Consensus 13 i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V-~~d--------~~V~~vPtfv~~~~g~~i~r~~G~-~ 82 (204)
T PTZ00062 13 IESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVV-NLA--------DANNEYGVFEFYQNSQLINSLEGC-N 82 (204)
T ss_pred HhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEE-ccc--------cCcccceEEEEEECCEEEeeeeCC-C
Confidence 333347899999999999999999999999999988666666 443 999999999999 88888899876 4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCChhhhccCCCcccccccCC-CcCCcccCCCcccccChHHHHHHHHHH
Q 020846 156 LDSLVAFYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEE-ESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 156 ~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~-~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
...|..++.++.+........+-.++++.++ .++.|..+ +++ |||+.|+++ ...+......|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~--~Vvvf~Kg~~~~--p~C~~C~~~--k~~L~~~~i~y 145 (204)
T PTZ00062 83 TSTLVSFIRGWAQKGSSEDTVEKIERLIRNH--KILLFMKGSKTF--PFCRFSNAV--VNMLNSSGVKY 145 (204)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CEEEEEccCCCC--CCChhHHHH--HHHHHHcCCCE
Confidence 8899999999887644321112234444432 33444432 345 899999987 55555444333
No 62
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=1e-14 Score=123.45 Aligned_cols=101 Identities=13% Similarity=0.220 Sum_probs=77.6
Q ss_pred CccEEEeC-cchhHHHHHhHHhhcC--CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCC
Q 020846 57 DIVGVIEG-DEVSLQMALNMVHKNS--HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV 133 (320)
Q Consensus 57 ~~v~~l~~-~~~~f~~~~~~~~~~~--~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V 133 (320)
+.+..++. ++ |.+. +.+. +.+++|+|||+||++|+.+.|.+++|+++|+.+.+ ..+|.+.. .++.+|+|
T Consensus 62 g~v~ei~~~~~--f~~~----v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF-~kVd~d~~-~l~~~f~v 133 (175)
T cd02987 62 GKVYELDSGEQ--FLDA----IDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKF-CKIRASAT-GASDEFDT 133 (175)
T ss_pred CeEEEcCCHHH--HHHH----HHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEE-EEEeccch-hhHHhCCC
Confidence 44555554 45 7666 3333 35999999999999999999999999999987544 44467665 89999999
Q ss_pred CccCeEEEE-eCceeEEEeC-------CCCHHHHHHHHHH
Q 020846 134 HGFPTLFLL-NSSMRVRYHG-------SRTLDSLVAFYSD 165 (320)
Q Consensus 134 ~~~Pti~l~-~g~~~~~~~G-------~~~~~~l~~~i~~ 165 (320)
.++||+++| +|+.+.++.| ..+.++|..++.+
T Consensus 134 ~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 134 DALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 999999999 8887777765 2466777777654
No 63
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.58 E-value=4.3e-14 Score=121.02 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=69.6
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc----------------------CCChhHHHhCCCCcc
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES----------------------AIRPSILSKYGVHGF 136 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~----------------------~~~~~l~~~~~V~~~ 136 (320)
..+++++|+|||+||++|+++.|.+++++++ ++..+.+... |.+..+...|+|.++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 3678999999999999999999999999764 4444444211 112245668999999
Q ss_pred CeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 137 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 137 Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
|+.+++ +|+...++.|..+.+++.+.++..+.
T Consensus 144 P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 144 PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 998888 78888999999999999998887764
No 64
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.58 E-value=1.6e-14 Score=115.72 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=71.9
Q ss_pred hcCC-CeEEEEEEcCCCHHHHhhHHHHH---HHHHHcCCCCeEEEeccCC-------------ChhHHHhCCCCccCeEE
Q 020846 78 KNSH-EYVAVLFYASWCPFSRNFRPSFS---VLSSLYSSIPHFAIEESAI-------------RPSILSKYGVHGFPTLF 140 (320)
Q Consensus 78 ~~~~-~~vlV~Fya~wC~~Ck~~~p~~~---~la~~~~~~~~v~~~~~~~-------------~~~l~~~~~V~~~Pti~ 140 (320)
++++ ++++|.|||+||++|+++.|.+. .+.+.+.+...+..++.+. ...++.+|+|.++||++
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 4567 89999999999999999999884 5666554422222334433 36899999999999999
Q ss_pred EE--e-CceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 141 LL--N-SSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 141 l~--~-g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
+| + |+.+.++.|..+.+.+.++|+....
T Consensus 90 ~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 90 FLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99 4 5778899999999999999988764
No 65
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.57 E-value=2.9e-14 Score=106.34 Aligned_cols=84 Identities=26% Similarity=0.484 Sum_probs=74.1
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCHH
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLD 157 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~~ 157 (320)
+.+++++|.||++||++|+.+.|.++++++.. +...+...+++.+..++++|++.++||+++| +|+....+.|..+.+
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~ 86 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY-PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKE 86 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhHHHHHHHHHC-CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHH
Confidence 44589999999999999999999999999984 4455556688888999999999999999999 788888999999989
Q ss_pred HHHHHH
Q 020846 158 SLVAFY 163 (320)
Q Consensus 158 ~l~~~i 163 (320)
.|.++|
T Consensus 87 ~l~~~i 92 (93)
T cd02947 87 ELEEFL 92 (93)
T ss_pred HHHHHh
Confidence 999887
No 66
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=7.6e-15 Score=139.65 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=89.8
Q ss_pred cccccCCCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC---CCCeEEEeccC--
Q 020846 48 CPISCNDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---SIPHFAIEESA-- 122 (320)
Q Consensus 48 ~~~~~~~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~---~~~~v~~~~~~-- 122 (320)
..|.....++++..++.++ |+.. +..+.+..+|+||++|||||++++|.|+++|+... .++.++.+||.
T Consensus 30 ~~ptLy~~~D~ii~Ld~~t--f~~~----v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~ 103 (606)
T KOG1731|consen 30 SNPTLYSPDDPIIELDVDT--FNAA----VFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE 103 (606)
T ss_pred CCCcccCCCCCeEEeehhh--hHHH----hcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch
Confidence 3444445568899999999 6666 66777799999999999999999999999998765 58899999995
Q ss_pred CChhHHHhCCCCccCeEEEE-eC----ceeEEEeCCCCHHHHHHHHHHhh
Q 020846 123 IRPSILSKYGVHGFPTLFLL-NS----SMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 123 ~~~~l~~~~~V~~~Pti~l~-~g----~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
.|..+|+.|+|.+|||+.+| .+ ..-..+.|.....++.+.+.+.+
T Consensus 104 ~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 104 ENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred hhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 47789999999999999999 22 22345566666677777666554
No 67
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=2.7e-13 Score=114.38 Aligned_cols=102 Identities=21% Similarity=0.396 Sum_probs=82.0
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEecc-------------
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES------------- 121 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~------------- 121 (320)
..+..++++.+++.+. .+++++|.||++||++|+...|.+.++.+++++ +..+.+ ++
T Consensus 44 ~~~~~~~g~~~~l~~~-------~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i-~~d~~~~~~~~~~~~ 115 (173)
T PRK03147 44 FVLTDLEGKKIELKDL-------KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAV-NVDETELAVKNFVNR 115 (173)
T ss_pred cEeecCCCCEEeHHHc-------CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEE-EcCCCHHHHHHHHHH
Confidence 3445567777666665 568999999999999999999999999999975 333443 32
Q ss_pred ---------CCChhHHHhCCCCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 020846 122 ---------AIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 122 ---------~~~~~l~~~~~V~~~Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
+.+..++++|+|.++|+++++ +|+.+..+.|..+.+++.+++++.
T Consensus 116 ~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 116 YGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred hCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 345678899999999999999 577777899999999999998764
No 68
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.54 E-value=7.3e-14 Score=111.34 Aligned_cols=84 Identities=19% Similarity=0.291 Sum_probs=65.3
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC-----------hhHHHhCC----CCccCeEEEE-
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR-----------PSILSKYG----VHGFPTLFLL- 142 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~-----------~~l~~~~~----V~~~Pti~l~- 142 (320)
.+++.++|+|+++|||+|+.+.|.+++++++.+ ..+..+|.+.+ .++.++|+ |.++||+++|
T Consensus 21 ~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k 98 (122)
T TIGR01295 21 DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHIT 98 (122)
T ss_pred HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEe
Confidence 567889999999999999999999999999843 22333344322 24556665 5569999999
Q ss_pred eCceeEEEeC-CCCHHHHHHHHH
Q 020846 143 NSSMRVRYHG-SRTLDSLVAFYS 164 (320)
Q Consensus 143 ~g~~~~~~~G-~~~~~~l~~~i~ 164 (320)
+|+.+.+..| ..+.++|.+|+.
T Consensus 99 ~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 99 DGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCeEEEEEeCCCCCHHHHHHHhh
Confidence 8889999989 457999999874
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.52 E-value=1e-13 Score=102.22 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=70.3
Q ss_pred EEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 84 vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
.+..||++||++|+.+.|.+++++++++....+..+|.+++++++++|+|.++||+++ +|+ .++.|..+.++|.+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~-~g~--~~~~G~~~~~~l~~~l 78 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI-NGD--VEFIGAPTKEELVEAI 78 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE-CCE--EEEecCCCHHHHHHHH
Confidence 4678999999999999999999999997666666778889999999999999999986 665 4888999999999998
Q ss_pred HHh
Q 020846 164 SDV 166 (320)
Q Consensus 164 ~~~ 166 (320)
++.
T Consensus 79 ~~~ 81 (82)
T TIGR00411 79 KKR 81 (82)
T ss_pred Hhh
Confidence 864
No 70
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.50 E-value=1.6e-13 Score=117.66 Aligned_cols=100 Identities=18% Similarity=0.280 Sum_probs=76.3
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcC--CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNS--HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV 133 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~--~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V 133 (320)
-+.+..++..+ |.+. +.+. +.+|+|+||++||++|+.+.|.|++||.+|+.+.++.+ +.+. ...+|+|
T Consensus 81 ~G~v~eis~~~--f~~e----V~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI-~ad~---~~~~~~i 150 (192)
T cd02988 81 FGEVYEISKPD--YVRE----VTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKI-ISTQ---CIPNYPD 150 (192)
T ss_pred CCeEEEeCHHH--HHHH----HHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEE-EhHH---hHhhCCC
Confidence 35566666655 7655 2333 35899999999999999999999999999987655544 5432 3689999
Q ss_pred CccCeEEEE-eCceeEEEeC-------CCCHHHHHHHHHH
Q 020846 134 HGFPTLFLL-NSSMRVRYHG-------SRTLDSLVAFYSD 165 (320)
Q Consensus 134 ~~~Pti~l~-~g~~~~~~~G-------~~~~~~l~~~i~~ 165 (320)
.++||+++| +|+.+.++.| ..+.++|..++.+
T Consensus 151 ~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 KNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999 8888888877 3466777777654
No 71
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.49 E-value=2.8e-13 Score=131.39 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=73.2
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEe---------------------------ccCCChhHHH
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE---------------------------ESAIRPSILS 129 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~---------------------------~~~~~~~l~~ 129 (320)
..+++++|+|||+||++|+.+.|.+++++++++ ++..+.+. ..|.+..+.+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 467999999999999999999999999999886 33333331 2345667899
Q ss_pred hCCCCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHH
Q 020846 130 KYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 130 ~~~V~~~Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
.|+|.++||++++ +|+.+.++.|..+.++|.++|+.
T Consensus 134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 9999999999888 68888999999999999999984
No 72
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.47 E-value=1.5e-12 Score=110.31 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=70.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe----------------------ccCCChhHHHhCCCCcc
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGF 136 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~----------------------~~~~~~~l~~~~~V~~~ 136 (320)
..+++++|+||++||++|+++.|.++++.+. +...+.+. ..|.+..+.++|++.++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4678999999999999999999999999875 23233222 12344567888999999
Q ss_pred CeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 137 PTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 137 Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
|+.+++ +|+...++.|..+.+++.++++++++
T Consensus 139 P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 988887 68888899999999999999998764
No 73
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.47 E-value=2.5e-13 Score=104.61 Aligned_cols=86 Identities=20% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCC--ccCeEEEEeC--ceeEEEe-CCCC
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--GFPTLFLLNS--SMRVRYH-GSRT 155 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~--~~Pti~l~~g--~~~~~~~-G~~~ 155 (320)
++++++.||++||++|+.+.|.++++|++|++.+.+..+|+++++++++.|||. ++|++++++. +....+. |..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 689999999999999999999999999999998888888999999999999999 9999999932 3334444 4459
Q ss_pred HHHHHHHHHHh
Q 020846 156 LDSLVAFYSDV 166 (320)
Q Consensus 156 ~~~l~~~i~~~ 166 (320)
.++|.+|+.+.
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 74
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.46 E-value=1.5e-12 Score=107.70 Aligned_cols=86 Identities=21% Similarity=0.509 Sum_probs=63.7
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeE--EEeccC---------CChhHH-HhC---CCCccCeEEEE--
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHF--AIEESA---------IRPSIL-SKY---GVHGFPTLFLL-- 142 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v--~~~~~~---------~~~~l~-~~~---~V~~~Pti~l~-- 142 (320)
.+++.+|+|||+||++|+++.|.+++++++|. ...+ .+++.. ...... ..| +|.++||++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 34667999999999999999999999999984 3333 332211 012333 345 89999999999
Q ss_pred eCcee-EEEeCCCCHHHHHHHHHHh
Q 020846 143 NSSMR-VRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 143 ~g~~~-~~~~G~~~~~~l~~~i~~~ 166 (320)
+|+.+ ..+.|..+.+++.+.+.+.
T Consensus 128 ~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEEEEEeecccCHHHHHHHHHHh
Confidence 45544 4688999999999888764
No 75
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.46 E-value=7.6e-13 Score=104.44 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=61.9
Q ss_pred cCCCeEEEEEEc-------CCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCC-------ChhHHHhCCCC-ccCeEEEE-
Q 020846 79 NSHEYVAVLFYA-------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-------RPSILSKYGVH-GFPTLFLL- 142 (320)
Q Consensus 79 ~~~~~vlV~Fya-------~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~-------~~~l~~~~~V~-~~Pti~l~- 142 (320)
..+++++|+||| +||++|+.+.|.++++++++++...+..+|.+. +.++..+|+|. ++||+++|
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~ 98 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWK 98 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEc
Confidence 346899999999 999999999999999999998544444445544 46899999998 99999999
Q ss_pred eCceeEEEeCCCCHHHHHHHH
Q 020846 143 NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 143 ~g~~~~~~~G~~~~~~l~~~i 163 (320)
+|+.+.... =.+.+.+..|+
T Consensus 99 ~~~~l~~~~-c~~~~~~~~~~ 118 (119)
T cd02952 99 TPQRLVEDE-CLQADLVEMFF 118 (119)
T ss_pred CCceecchh-hcCHHHHHHhh
Confidence 443322211 13555555443
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.44 E-value=2.2e-13 Score=107.76 Aligned_cols=99 Identities=15% Similarity=0.314 Sum_probs=67.7
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh-hHHHhCCCCc--cCeEEEE--e
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP-SILSKYGVHG--FPTLFLL--N 143 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~-~l~~~~~V~~--~Pti~l~--~ 143 (320)
++++++.. ..++++++|+|||+||++|+.+.|.+.+..........+..++.+.+. ....+|++.+ +||+++| +
T Consensus 8 ~~~al~~A-~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 8 LEDGIKEA-KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHH-HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 45554333 567899999999999999999999999987754332222223333333 4567899987 9999999 6
Q ss_pred CceeE---EEeCCCCHHHHHHHHHHhhC
Q 020846 144 SSMRV---RYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 144 g~~~~---~~~G~~~~~~l~~~i~~~~~ 168 (320)
|+.+. ...|..+.+.+.+.+...++
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHHHh
Confidence 66654 45566666666666655543
No 77
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.43 E-value=3.2e-12 Score=107.74 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=76.6
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe--cc----------CCC
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE--ES----------AIR 124 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~--~~----------~~~ 124 (320)
......+|+.++++++ + +|.||++||++|+++.|.+++++++|+ +..+++. +. +..
T Consensus 56 ~~f~l~dG~~v~lsd~---------~--lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~ 123 (181)
T PRK13728 56 RWFRLSNGRQVNLADW---------K--VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPP 123 (181)
T ss_pred CccCCCCCCEeehhHc---------e--EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCch
Confidence 3445558888777766 2 778999999999999999999999984 4444332 11 012
Q ss_pred hhHHHhCCC--CccCeEEEE--eCcee-EEEeCCCCHHHHHHHHHHhhCC
Q 020846 125 PSILSKYGV--HGFPTLFLL--NSSMR-VRYHGSRTLDSLVAFYSDVTGM 169 (320)
Q Consensus 125 ~~l~~~~~V--~~~Pti~l~--~g~~~-~~~~G~~~~~~l~~~i~~~~~~ 169 (320)
..+...|++ .++||.+++ +|+.. ..+.|..+.++|.+.+.+.+..
T Consensus 124 ~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 124 DVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred hHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 346678995 699999999 56664 4799999999999999988865
No 78
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.36 E-value=6.4e-12 Score=100.67 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=63.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe----------------------ccCCChhHHHhCCCCccC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE----------------------ESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~----------------------~~~~~~~l~~~~~V~~~P 137 (320)
.+++++|+||++||++|+.+.|.++++++++. +..+++. ..|.+..+++.|+|.++|
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P 102 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP 102 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence 57899999999999999999999999998873 3333332 234556788999999999
Q ss_pred eEEEE--eCceeEEEeCCCCHHHH
Q 020846 138 TLFLL--NSSMRVRYHGSRTLDSL 159 (320)
Q Consensus 138 ti~l~--~g~~~~~~~G~~~~~~l 159 (320)
+.+++ +|+.+.++.|..+.+.|
T Consensus 103 ~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 103 ETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred eEEEECCCceEEEEEeccCChHhc
Confidence 87777 68888899999887754
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.35 E-value=1.2e-11 Score=122.85 Aligned_cols=98 Identities=19% Similarity=0.350 Sum_probs=76.9
Q ss_pred hHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCCCCeEEEeccC----CChhHHHhCCCCccCeEE
Q 020846 68 SLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESA----IRPSILSKYGVHGFPTLF 140 (320)
Q Consensus 68 ~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~~~~v~~~~~~----~~~~l~~~~~V~~~Pti~ 140 (320)
++++.++.. ..++++++|+|||+||++|+.+.|.. +++.+.+++...+.+ |.+ ++.+++++|+|.++||++
T Consensus 462 ~l~~~l~~a-~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~v-Dvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 462 ELDQALAEA-KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQA-DVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHH-HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEE-ECCCCChhhHHHHHHcCCCCCCEEE
Confidence 366664332 34578999999999999999999875 778888877555544 333 346899999999999999
Q ss_pred EE--eCce--eEEEeCCCCHHHHHHHHHHhh
Q 020846 141 LL--NSSM--RVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 141 l~--~g~~--~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+| +|++ ..++.|..+.+++.+++++..
T Consensus 540 ~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 540 FFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 99 4666 368899999999999998753
No 80
>PHA02125 thioredoxin-like protein
Probab=99.35 E-value=7.1e-12 Score=91.15 Aligned_cols=70 Identities=23% Similarity=0.386 Sum_probs=55.3
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCC-CCHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAF 162 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~-~~~~~l~~~ 162 (320)
++.|||+||++|+.+.|.++++.- ..+. +|.+++++++++|+|.++||++ +|+...++.|. .+..+|.+-
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~-----~~~~-vd~~~~~~l~~~~~v~~~PT~~--~g~~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEY-----TYVD-VDTDEGVELTAKHHIRSLPTLV--NTSTLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhh-----eEEe-eeCCCCHHHHHHcCCceeCeEE--CCEEEEEEeCCCCcHHHHHHH
Confidence 789999999999999999987642 2333 4677889999999999999987 67777788885 455666554
No 81
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.34 E-value=8.1e-12 Score=99.31 Aligned_cols=95 Identities=22% Similarity=0.404 Sum_probs=72.2
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc------------------
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES------------------ 121 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~------------------ 121 (320)
..++++.++.... .+++++|.||++||++|+.+.|.+.++++++. +..+..++.
T Consensus 6 ~~~~g~~~~~~~~-------~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~ 77 (123)
T cd03011 6 TTLDGEQFDLESL-------SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPV 77 (123)
T ss_pred ecCCCCEeeHHHh-------CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccE
Confidence 3455666444444 56899999999999999999999999998853 233332221
Q ss_pred --CCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCHHHHHHH
Q 020846 122 --AIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTLDSLVAF 162 (320)
Q Consensus 122 --~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~~~l~~~ 162 (320)
+.+..++++|+|.++|+++++ +++...++.|..+.++|.+-
T Consensus 78 ~~d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 78 INDPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EECCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 345689999999999999999 45577789999999988753
No 82
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.34 E-value=6.4e-12 Score=91.60 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=57.6
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCC-CCHHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAFY 163 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~-~~~~~l~~~i 163 (320)
-|.||++||++|+.+.|.++++++++.....+..++ +.+.+.+|+|.++||+++ +|+.. +.|. .+.++|.+++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i-~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV-DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE-CCEEE--EEeccCCHHHHHHHh
Confidence 378999999999999999999999997644443333 345578899999999999 77666 7775 4557787765
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.33 E-value=3.8e-12 Score=99.58 Aligned_cols=85 Identities=18% Similarity=0.396 Sum_probs=59.8
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHH---HHcCCCCeEEEeccCC--------------------ChhHHHhCCCCc
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLS---SLYSSIPHFAIEESAI--------------------RPSILSKYGVHG 135 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la---~~~~~~~~v~~~~~~~--------------------~~~l~~~~~V~~ 135 (320)
.++++++|.|+++||++|+++.+.+.+.. ..+.....+...+.+. +.++.++|||.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 57899999999999999999999998643 3343222222222221 246899999999
Q ss_pred cCeEEEE--eCceeEEEeCCCCHHHHHHHH
Q 020846 136 FPTLFLL--NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 136 ~Pti~l~--~g~~~~~~~G~~~~~~l~~~i 163 (320)
+||++++ +|+.+.++.|..+.++|.+++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999 488888999999999998875
No 84
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.28 E-value=1.8e-11 Score=98.68 Aligned_cols=74 Identities=26% Similarity=0.472 Sum_probs=57.0
Q ss_pred EEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC----CCeEEEeccCC-------------
Q 020846 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS----IPHFAIEESAI------------- 123 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~----~~~v~~~~~~~------------- 123 (320)
.++|+.+++.+. .+++++|+||++||++|+++.|.++++.+++.+ ...+.+ +.+.
T Consensus 5 ~~~G~~v~l~~~-------~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~i-s~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 5 RNDGGKVPVSSL-------EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFI-SWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccCCCCccHHHh-------CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEE-ECCCCHHHHHHHHHcCC
Confidence 356777777776 678999999999999999999999999888753 222222 2221
Q ss_pred -----------ChhHHHhCCCCccCeEEEE
Q 020846 124 -----------RPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 124 -----------~~~l~~~~~V~~~Pti~l~ 142 (320)
...++++|+|.++||++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~v~~~P~~~li 106 (131)
T cd03009 77 WLAVPFSDRERRSRLNRTFKIEGIPTLIIL 106 (131)
T ss_pred eeEcccCCHHHHHHHHHHcCCCCCCEEEEE
Confidence 1467889999999999999
No 85
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.28 E-value=5.1e-11 Score=107.75 Aligned_cols=89 Identities=15% Similarity=0.239 Sum_probs=69.5
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEecc--------CCChhHHHhCCCCccCeEEEE-e-CceeE
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEES--------AIRPSILSKYGVHGFPTLFLL-N-SSMRV 148 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~--------~~~~~l~~~~~V~~~Pti~l~-~-g~~~~ 148 (320)
.++++||+|||+||++|+.+.|.+++++++|.- +..+.+++. ..+..++++|||.++||++++ . ++.+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 578999999999999999999999999999852 222333211 113578999999999999999 3 45544
Q ss_pred -EEeCCCCHHHHHHHHHHhhC
Q 020846 149 -RYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 149 -~~~G~~~~~~l~~~i~~~~~ 168 (320)
...|..+.++|.+.+.....
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 45688999999999987765
No 86
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.27 E-value=7e-11 Score=100.14 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=77.7
Q ss_pred cCCCcccccCCCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHH-cCC-----CCeEE
Q 020846 44 QDSFCPISCNDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSL-YSS-----IPHFA 117 (320)
Q Consensus 44 ~~~~~~~~~~~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~-~~~-----~~~v~ 117 (320)
..|+..|...-.+..-..++++++++..+-. . .-.+++.+|.|||+||++|+...|.+++++++ ++- ...+.
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~-~-~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN 101 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGS-A-ELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIIN 101 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccH-H-HcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEE
Confidence 4455554442223333445666655554411 1 12489999999999999999999999999764 321 12222
Q ss_pred Eec--------------------------cCCChhHHHhCCCCccCeE-EEE--eCceeEEEeCCCCHHHHHHHH
Q 020846 118 IEE--------------------------SAIRPSILSKYGVHGFPTL-FLL--NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 118 ~~~--------------------------~~~~~~l~~~~~V~~~Pti-~l~--~g~~~~~~~G~~~~~~l~~~i 163 (320)
.+| .|.+..+..+|++.++|+. +++ +|+...++.|..+.+++.+.+
T Consensus 102 ~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 102 ADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 221 1123356779999999888 677 688899999999888876643
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.27 E-value=3.3e-11 Score=105.59 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred CeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 020846 82 EYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 82 ~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~ 161 (320)
...++.||++||++|+.+.|.+++++.+++. +.+..+|.+.+++++++|+|.++||++++++.. ++.|..+.++|.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~-i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~--~~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDK-ILGEMIEANENPDLAEKYGVMSVPKIVINKGVE--EFVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCc-eEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE--EEECCCCHHHHHH
Confidence 3455559999999999999999999998654 444456888999999999999999999983332 3999999999999
Q ss_pred HHHH
Q 020846 162 FYSD 165 (320)
Q Consensus 162 ~i~~ 165 (320)
++.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 9875
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.25 E-value=2.6e-11 Score=97.97 Aligned_cols=72 Identities=25% Similarity=0.467 Sum_probs=54.2
Q ss_pred eCc-chhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC----CeEEEeccCCC-------------
Q 020846 63 EGD-EVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI----PHFAIEESAIR------------- 124 (320)
Q Consensus 63 ~~~-~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~----~~v~~~~~~~~------------- 124 (320)
+++ +++++++ .+++++|+|||+||++|+.+.|.++++++++.+. ..+.+ +.+..
T Consensus 5 ~~~~~v~l~~~-------~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~V-s~d~~~~~~~~~~~~~~~ 76 (132)
T cd02964 5 DGEGVVPVSAL-------EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFV-SRDRSEESFNEYFSEMPP 76 (132)
T ss_pred cCCccccHHHh-------CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEE-ecCCCHHHHHHHHhcCCC
Confidence 444 5557666 6799999999999999999999999999887642 22222 22221
Q ss_pred ------------hhHHHhCCCCccCeEEEE
Q 020846 125 ------------PSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 125 ------------~~l~~~~~V~~~Pti~l~ 142 (320)
..+.+.|+|.++||++++
T Consensus 77 ~~~~~~~d~~~~~~~~~~~~v~~iPt~~li 106 (132)
T cd02964 77 WLAVPFEDEELRELLEKQFKVEGIPTLVVL 106 (132)
T ss_pred eEeeccCcHHHHHHHHHHcCCCCCCEEEEE
Confidence 246677999999999999
No 89
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=8.1e-11 Score=124.44 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=80.7
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCC--CeEEEe----c---------------
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSI--PHFAIE----E--------------- 120 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~--~~v~~~----~--------------- 120 (320)
++++.++|.+. -.+++++|+|||+||++|+.+.|.+++++++|++. ..+++. |
T Consensus 407 ~~g~~~~l~~~------lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~ 480 (1057)
T PLN02919 407 LNTAPLQFRRD------LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRY 480 (1057)
T ss_pred cCCccccchhh------cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHh
Confidence 56666666433 15799999999999999999999999999999763 344441 1
Q ss_pred -------cCCChhHHHhCCCCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 121 -------SAIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 121 -------~~~~~~l~~~~~V~~~Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
+|.+..+.++|+|.++||++++ +|+.+.++.|....+.|.+++++.+.
T Consensus 481 ~i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 481 NISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 1234567889999999999999 68888899999999999999988753
No 90
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.23 E-value=6.4e-11 Score=96.91 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=52.6
Q ss_pred cchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC---------CCCeEEEeccCC------------
Q 020846 65 DEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---------SIPHFAIEESAI------------ 123 (320)
Q Consensus 65 ~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~---------~~~~v~~~~~~~------------ 123 (320)
+..+++++ .+++++|+|||+||++|+++.|.++++.+++. +...+.+. .+.
T Consensus 16 ~~~~ls~~-------kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs-~D~~~~~~~~f~~~~ 87 (146)
T cd03008 16 EREIVARL-------ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVS-MDQSEQQQESFLKDM 87 (146)
T ss_pred ccccHHHh-------CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEE-CCCCHHHHHHHHHHC
Confidence 33346666 67999999999999999999999999877553 23333332 111
Q ss_pred -------------ChhHHHhCCCCccCeEEEEe
Q 020846 124 -------------RPSILSKYGVHGFPTLFLLN 143 (320)
Q Consensus 124 -------------~~~l~~~~~V~~~Pti~l~~ 143 (320)
...++.+|+|.++||+++++
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId 120 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVEELPTVVVLK 120 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCCCCCEEEEEC
Confidence 12578899999999999993
No 91
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=8.5e-11 Score=93.70 Aligned_cols=87 Identities=10% Similarity=0.139 Sum_probs=59.8
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHH-H--HHHHHHcC-CCCeEEEeccCCChhHHH--------hCCCCccCeEEEE--e
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYS-SIPHFAIEESAIRPSILS--------KYGVHGFPTLFLL--N 143 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~-~--~~la~~~~-~~~~v~~~~~~~~~~l~~--------~~~V~~~Pti~l~--~ 143 (320)
.+.+++++|+|||+||+.|+.|.+. | .++++.+. +.+.+.+ |.++++++.+ .||+.++||++++ +
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~Vkv-D~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKV-DREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEE-eCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 6788999999999999999999873 3 35555543 4444444 5666666654 3689999999999 6
Q ss_pred CceeEEEeCC-----CCHHHHHHHHHH
Q 020846 144 SSMRVRYHGS-----RTLDSLVAFYSD 165 (320)
Q Consensus 144 g~~~~~~~G~-----~~~~~l~~~i~~ 165 (320)
|+.+....+. .+...+.+++++
T Consensus 91 G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 91 LKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 7776554432 233455555544
No 92
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.19 E-value=7.6e-11 Score=92.40 Aligned_cols=86 Identities=15% Similarity=0.288 Sum_probs=56.3
Q ss_pred EEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccC--CC-------------
Q 020846 61 VIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESA--IR------------- 124 (320)
Q Consensus 61 ~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~--~~------------- 124 (320)
.++|+.+++.+. .++++++|.||++||++|+.+.|.++++++++.+ ...+.+.+.+ +.
T Consensus 7 ~~~G~~~~l~~~------~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p 80 (114)
T cd02967 7 TIDGAPVRIGGI------SPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFP 80 (114)
T ss_pred cCCCCEEEcccc------cCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCc
Confidence 345666555555 2478999999999999999999999999988865 3333332211 11
Q ss_pred ----hhHHHhCCCCccCeEEEEeCceeEEEeC
Q 020846 125 ----PSILSKYGVHGFPTLFLLNSSMRVRYHG 152 (320)
Q Consensus 125 ----~~l~~~~~V~~~Pti~l~~g~~~~~~~G 152 (320)
.++.++|++.++|++++++.+-.+.|.|
T Consensus 81 ~~~~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 81 YVLSAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred EEecHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 2455666777777777774333444443
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.19 E-value=1.3e-10 Score=89.97 Aligned_cols=83 Identities=33% Similarity=0.563 Sum_probs=64.9
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEeccCCC---------------
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESAIR--------------- 124 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~~~--------------- 124 (320)
++++.+++.+. .+++++|.||++||++|++..+.+.++.+++. ++..+ .++.+.+
T Consensus 7 ~~g~~~~~~~~-------~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~-~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 7 LDGKPVSLSDL-------KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVV-GVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CCCCEeehHHc-------CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEE-EEECCCCCHHHHHHHHHHcCCC
Confidence 45566556555 47899999999999999999999999999995 43333 3355543
Q ss_pred --------hhHHHhCCCCccCeEEEE--eCceeEEEeC
Q 020846 125 --------PSILSKYGVHGFPTLFLL--NSSMRVRYHG 152 (320)
Q Consensus 125 --------~~l~~~~~V~~~Pti~l~--~g~~~~~~~G 152 (320)
..+.+.|++.++|+++++ +|+.+.++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 79 FPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 678999999999999999 5667777765
No 94
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.12 E-value=3.6e-10 Score=85.67 Aligned_cols=61 Identities=33% Similarity=0.641 Sum_probs=47.7
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC---CCCeEEEeccCCC-------------------------hhHHHhCC
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYS---SIPHFAIEESAIR-------------------------PSILSKYG 132 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~---~~~~v~~~~~~~~-------------------------~~l~~~~~ 132 (320)
+++++|+|||+||++|+...|.+.++.++|+ ++..+.+ ..+.+ ..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~V-s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFV-SLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE-E-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEE-EeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 5899999999999999999999999999999 3333333 22222 35888999
Q ss_pred CCccCeEEEE
Q 020846 133 VHGFPTLFLL 142 (320)
Q Consensus 133 V~~~Pti~l~ 142 (320)
|.++|+++++
T Consensus 80 i~~iP~~~ll 89 (95)
T PF13905_consen 80 INGIPTLVLL 89 (95)
T ss_dssp -TSSSEEEEE
T ss_pred CCcCCEEEEE
Confidence 9999999999
No 95
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.12 E-value=1.5e-10 Score=81.98 Aligned_cols=59 Identities=20% Similarity=0.437 Sum_probs=49.5
Q ss_pred EEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeC
Q 020846 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS 144 (320)
Q Consensus 84 vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g 144 (320)
-++.||++||++|+++.+.+++++..++++. +...|.+++++++++||+.++||+++ +|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~-~~~id~~~~~~l~~~~~i~~vPti~i-~~ 60 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNIS-AEMIDAAEFPDLADEYGVMSVPAIVI-NG 60 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceE-EEEEEcccCHhHHHHcCCcccCEEEE-CC
Confidence 4778999999999999999999988775544 44457778899999999999999865 55
No 96
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.11 E-value=3.5e-10 Score=97.85 Aligned_cols=105 Identities=14% Similarity=0.223 Sum_probs=77.5
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccC-----------CC
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA-----------IR 124 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~-----------~~ 124 (320)
.+..++|+.++++++ .+++++|.|||+||++|++..|.++++.++|.+ ...+++ +++ +.
T Consensus 23 ~l~d~~G~~vsL~~~-------kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv-~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 23 TVKTLEGTTVPMSSL-------KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAF-PTSQFLNQEFPNTKDI 94 (199)
T ss_pred EEECCCCCEEeHHHh-------CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEe-cchhccCCCCCCHHHH
Confidence 345567888788887 578999999999999999999999999999974 455555 221 12
Q ss_pred hhHHHhCCC--------------------------------C----ccC---eEEEE--eCceeEEEeCCCCHHHHHHHH
Q 020846 125 PSILSKYGV--------------------------------H----GFP---TLFLL--NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 125 ~~l~~~~~V--------------------------------~----~~P---ti~l~--~g~~~~~~~G~~~~~~l~~~i 163 (320)
...++++++ . ++| +.+++ +|+.+.++.|..+.+.|.+.|
T Consensus 95 ~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I 174 (199)
T PTZ00056 95 RKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKI 174 (199)
T ss_pred HHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHH
Confidence 234444443 1 122 56777 688888999989999999999
Q ss_pred HHhhCCC
Q 020846 164 SDVTGMN 170 (320)
Q Consensus 164 ~~~~~~~ 170 (320)
++.++.+
T Consensus 175 ~~ll~~~ 181 (199)
T PTZ00056 175 AELLGVK 181 (199)
T ss_pred HHHHHHH
Confidence 9887644
No 97
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.10 E-value=6.9e-10 Score=95.29 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=69.3
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc----------------
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES---------------- 121 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~---------------- 121 (320)
.++.++|+++++.+. ...+++++|+|||+||++|+++.|.+.++.+++. ...+.+.+.
T Consensus 56 ~l~d~~G~~v~l~~~-----~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~-~~vv~Is~~~~~~~~~~~~~~~~~~ 129 (189)
T TIGR02661 56 NLPDFDGEPVRIGGS-----IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE-TDVVMISDGTPAEHRRFLKDHELGG 129 (189)
T ss_pred EecCCCCCEEeccch-----hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHHHHhcCCCc
Confidence 344556777555322 1367899999999999999999999999987753 333333211
Q ss_pred ---CCChhHHHhCCCCccCeEEEEeCceeEEEeCC-CCHHHHHHHHHHh
Q 020846 122 ---AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGS-RTLDSLVAFYSDV 166 (320)
Q Consensus 122 ---~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~-~~~~~l~~~i~~~ 166 (320)
....++.+.|+|.++|+.++++.+-.+++.|. ...+.+.+.++..
T Consensus 130 ~~~~~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 130 ERYVVSAEIGMAFQVGKIPYGVLLDQDGKIRAKGLTNTREHLESLLEAD 178 (189)
T ss_pred ceeechhHHHHhccCCccceEEEECCCCeEEEccCCCCHHHHHHHHHHH
Confidence 01346788999999999999843333344564 3556777777644
No 98
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.08 E-value=8.9e-10 Score=88.18 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=62.8
Q ss_pred cchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEec----------------------
Q 020846 65 DEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEE---------------------- 120 (320)
Q Consensus 65 ~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~---------------------- 120 (320)
+.+++.+. .+++++|+||++||++|++..|.++++.++|++ +..+.+..
T Consensus 14 ~~v~l~~~-------~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~ 86 (126)
T cd03012 14 KPLSLAQL-------RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGIT 86 (126)
T ss_pred CccCHHHh-------CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCC
Confidence 44556665 578999999999999999999999999999974 34444311
Q ss_pred ----cCCChhHHHhCCCCccCeEEEE--eCceeEEEeCC
Q 020846 121 ----SAIRPSILSKYGVHGFPTLFLL--NSSMRVRYHGS 153 (320)
Q Consensus 121 ----~~~~~~l~~~~~V~~~Pti~l~--~g~~~~~~~G~ 153 (320)
.|....+.+.|++.++|+.+++ +|+.+..+.|.
T Consensus 87 ~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 87 YPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEEecC
Confidence 0122357788999999999999 57777777764
No 99
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.08 E-value=9.3e-10 Score=90.18 Aligned_cols=93 Identities=29% Similarity=0.478 Sum_probs=71.0
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEcC-CCHHHHhhHHHHHHHHHHcCC--CCeEEEecc-----------------
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEES----------------- 121 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~-wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~----------------- 121 (320)
.+++.+++.++ .+++++|.||++ |||+|+...|.++++.+.|++ +..+.+.-.
T Consensus 16 ~~g~~~~l~~~-------~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~ 88 (146)
T PF08534_consen 16 LDGKPVSLSDF-------KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFP 88 (146)
T ss_dssp TTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSE
T ss_pred CCCCEecHHHh-------CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCce
Confidence 67777777665 789999999999 999999999999999988653 333333211
Q ss_pred ---CCChhHHHhCCCC---------ccCeEEEE--eCceeEEEeCCCC--HHHHHH
Q 020846 122 ---AIRPSILSKYGVH---------GFPTLFLL--NSSMRVRYHGSRT--LDSLVA 161 (320)
Q Consensus 122 ---~~~~~l~~~~~V~---------~~Pti~l~--~g~~~~~~~G~~~--~~~l~~ 161 (320)
|.+..+.++|++. ++|+++++ +|+.+....|..+ ..++.+
T Consensus 89 ~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 89 VLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp EEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred EEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 2335789999998 99999999 6888888888765 444443
No 100
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.07 E-value=9.9e-10 Score=96.99 Aligned_cols=102 Identities=17% Similarity=0.193 Sum_probs=76.6
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccC--------C---Ch
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA--------I---RP 125 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~--------~---~~ 125 (320)
+..++|+.+++.+. .+++++|.|||+||++|+...|.++++.++|++ ...+++. ++ . ..
T Consensus 84 l~d~~G~~vsLsd~-------kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~-~d~~~~~e~~s~~ei~ 155 (236)
T PLN02399 84 VKDIDGKDVALSKF-------KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP-CNQFGGQEPGSNPEIK 155 (236)
T ss_pred EECCCCCEEeHHHh-------CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe-cccccccCCCCHHHHH
Confidence 45567888788877 578999999999999999999999999999974 4455543 21 1 11
Q ss_pred hHH-HhCC----------------------------------CCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 126 SIL-SKYG----------------------------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 126 ~l~-~~~~----------------------------------V~~~Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
+.+ ++++ |...||.+++ +|+.+.+|.|..+.++|.+.|++.+.
T Consensus 156 ~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 156 QFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred HHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 222 2221 2235889999 78899999999999999999988763
No 101
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.07 E-value=9.5e-10 Score=82.59 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=62.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (320)
.+..-+..|+++||++|+...+.+++++..+++ ..+.+.|.++.++++++|||.++||+++ +|+... .|..+.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~~~e~a~~~~V~~vPt~vi-dG~~~~--~G~~~~~e~ 86 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGALFQDEVEERGIMSVPAIFL-NGELFG--FGRMTLEEI 86 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHhCHHHHHHcCCccCCEEEE-CCEEEE--eCCCCHHHH
Confidence 456678899999999999999999999999876 4555557778899999999999999964 776544 586676665
Q ss_pred H
Q 020846 160 V 160 (320)
Q Consensus 160 ~ 160 (320)
.
T Consensus 87 ~ 87 (89)
T cd03026 87 L 87 (89)
T ss_pred h
Confidence 4
No 102
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.06 E-value=2.4e-09 Score=84.23 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=73.0
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHH-H--HHHHHHcCC-CCeEEEec-cCCChhHHHhCCCCccCeEEEE-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPS-F--SVLSSLYSS-IPHFAIEE-SAIRPSILSKYGVHGFPTLFLL- 142 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~-~--~~la~~~~~-~~~v~~~~-~~~~~~l~~~~~V~~~Pti~l~- 142 (320)
|+++++.. .+.+++++|+|+++||++|+.+... | +++.+.+.. .+.+..+- ..+..+++..|++.++|+++++
T Consensus 6 ~~~a~~~A-k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 6 FEDAKQEA-KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID 84 (114)
T ss_pred HHHHHHHH-HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEe
Confidence 56664444 5678999999999999999999653 3 344444433 23333321 1245689999999999999999
Q ss_pred --eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 143 --NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 143 --~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+|+.+.+..|..+.+++...+++..
T Consensus 85 ~~~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 85 PRTGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CccCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 3678889999999999999988764
No 103
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.01 E-value=7.5e-11 Score=92.41 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCC---CcccccChHHHHHHHH-----------------HHHHHHHHh
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWAR---SPENLLQQETYLALAT-----------------AFVLLRLVY 230 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~---~c~~~~~~~~~~~la~-----------------~f~~~~~~i 230 (320)
+..|++.+|++++..+..+++.|+ ++.|||+ ||+++ +|.|...+. .=++.||+|
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~----A~~Pwc~k~~~~~~L--A~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFD----TAYPYGEKHEAFTRL--AESSASATDDLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEe----CCCCCCCChHHHHHH--HHHHHhhcCceEEEEEecccccchhhHHHHHHhCC
Confidence 456789999999998888999998 5679999 99999 999876442 336799999
Q ss_pred h--hchhHhhhhchhhhhhhhhccccccccchhhHhh--HHHHHH-HHhccc
Q 020846 231 I--FLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYLN--RAIQLF-KTLNEP 277 (320)
Q Consensus 231 ~--~~Pti~~~~~~~~~~~~~~~~~~~~~~~~~~y~~--r~~~~~-~~l~~~ 277 (320)
. +||||++|.+|. .+.|..|.| |..+.+ +|++++
T Consensus 77 ~~~gyPTl~lF~~g~-------------~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGD-------------FENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCC-------------cCCCccCCCCcccHHHHHHHHHhc
Confidence 9 999999999983 146788994 776555 888853
No 104
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.98 E-value=2.5e-09 Score=103.45 Aligned_cols=96 Identities=20% Similarity=0.337 Sum_probs=75.4
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCCCCeEEEeccC---CChhHHHhCCCCccCeEEEE
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSSIPHFAIEESA---IRPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~~~~v~~~~~~---~~~~l~~~~~V~~~Pti~l~ 142 (320)
++++ ...+.+++|+|+|||+||-.||.+++.. .+...+.++++.+..|-.. ++.++.++||+-+.|++++|
T Consensus 465 L~~~---la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 465 LDQA---LAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHH---HHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 6666 2334446999999999999999998865 3455667787777775333 34567899999999999999
Q ss_pred --eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 143 --NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 143 --~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+|++.....|..+.+.+.+++++..
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 6777777999999999999998753
No 105
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.97 E-value=1.1e-08 Score=81.81 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=83.5
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEc--CCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCccCe
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYA--SWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya--~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~~Pt 138 (320)
++..+ ++.+ .......+|.|-. .-++.+-...=++++++++|++ ...++.+|.|+++.++.+|||.++||
T Consensus 22 ~~~~~--~~~~-----~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPT 94 (132)
T PRK11509 22 VSESR--LDDW-----LTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPA 94 (132)
T ss_pred ccccc--HHHH-----HhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCE
Confidence 44445 7777 3444445544442 3467888889999999999985 47888889999999999999999999
Q ss_pred EEEE-eCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 139 LFLL-NSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 139 i~l~-~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
+++| +|+.+.+..|.++.+++.++|++++...
T Consensus 95 Ll~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 95 TLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999 8999999999999999999999998754
No 106
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.96 E-value=3.6e-09 Score=87.63 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=72.6
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEecc--------CC---Chh
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES--------AI---RPS 126 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~--------~~---~~~ 126 (320)
..++|+.++++++ .+++++|.|||+||++|+...|.++++.++|.+ +..+++. + +. ..+
T Consensus 8 ~~~~G~~~~l~~~-------~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~-~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 8 KDARGRTVSLEKY-------RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFP-CNQFGESEPDSSKEIES 79 (153)
T ss_pred ECCCCCEecHHHh-------CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEe-ccccccCCCCCHHHHHH
Confidence 4457777778887 678999999999999999999999999999974 4444442 1 11 122
Q ss_pred HHHh-CC-----------------------C---CccCe----EEEE--eCceeEEEeCCCCHHHHHHHHHHh
Q 020846 127 ILSK-YG-----------------------V---HGFPT----LFLL--NSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 127 l~~~-~~-----------------------V---~~~Pt----i~l~--~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
.+++ ++ + .++|+ .+++ +|+...+|.|..+.++|.+.|++.
T Consensus 80 f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 80 FARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred HHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 2321 22 1 14787 7777 788899999999999999888764
No 107
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.92 E-value=3.7e-09 Score=87.47 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=66.8
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEe-cc---------CCChhH
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE-ES---------AIRPSI 127 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~-~~---------~~~~~l 127 (320)
..++++.+++.++ .+++++|.|||+||+ |+...|.++++.++|.+ ...+++. +. +...+.
T Consensus 8 ~d~~G~~v~l~~~-------~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 8 KDIDGEPVSLSKY-------KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred ECCCCCEEeHHHh-------CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 3456777778777 579999999999999 99999999999999964 4455542 10 111123
Q ss_pred HHh-CC-----------------------CCccC-----------eEEEE--eCceeEEEeCCCCHHHHHHH
Q 020846 128 LSK-YG-----------------------VHGFP-----------TLFLL--NSSMRVRYHGSRTLDSLVAF 162 (320)
Q Consensus 128 ~~~-~~-----------------------V~~~P-----------ti~l~--~g~~~~~~~G~~~~~~l~~~ 162 (320)
+++ ++ +.++| |.+++ +|+.+.++.|..+.++|.+.
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 322 22 23466 57777 78888899999888877653
No 108
>PLN02412 probable glutathione peroxidase
Probab=98.90 E-value=1.3e-08 Score=85.65 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=75.6
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEecc--------CCChh--
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES--------AIRPS-- 126 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~--------~~~~~-- 126 (320)
+..++++.++++++ .+++++|.|||+||+.|++..|.++++.++|++ ...+++. + +...+
T Consensus 14 l~d~~G~~v~l~~~-------~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~-~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 14 VKDIGGNDVSLNQY-------KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFP-CNQFLGQEPGSNEEIQ 85 (167)
T ss_pred EECCCCCEEeHHHh-------CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEec-ccccccCCCCCHHHHH
Confidence 34467777777776 568999999999999999999999999999974 4445542 2 11111
Q ss_pred --HHHhCC----------------------------------CCccCeEEEE--eCceeEEEeCCCCHHHHHHHHHHhhC
Q 020846 127 --ILSKYG----------------------------------VHGFPTLFLL--NSSMRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 127 --l~~~~~----------------------------------V~~~Pti~l~--~g~~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
.+++++ |...|+.+++ +|+.+.++.|..+.++|.+.|++.+.
T Consensus 86 ~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 86 QTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred HHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 112211 3446888888 78889999999999999999988764
No 109
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.89 E-value=3.3e-08 Score=83.36 Aligned_cols=107 Identities=20% Similarity=0.301 Sum_probs=76.4
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEeccC---------------
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEESA--------------- 122 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~~--------------- 122 (320)
...+++.++++++ ..++++||+||++||+.|.+..|.+.++.++|+ ++..+++. .+
T Consensus 10 ~~~~g~~v~l~~~------~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is-~d~~~~~~~d~~~~~~~ 82 (171)
T cd02969 10 PDTDGKTYSLADF------ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAIN-SNDIEAYPEDSPENMKA 82 (171)
T ss_pred cCCCCCEEeHHHH------hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEe-cCccccccccCHHHHHH
Confidence 3345666667765 367899999999999999999999999999997 34444442 21
Q ss_pred --------------CChhHHHhCCCCccCeEEEE--eCceeEEE---------eCCCCHHHHHHHHHHhhCCCCCC
Q 020846 123 --------------IRPSILSKYGVHGFPTLFLL--NSSMRVRY---------HGSRTLDSLVAFYSDVTGMNTAS 173 (320)
Q Consensus 123 --------------~~~~l~~~~~V~~~Pti~l~--~g~~~~~~---------~G~~~~~~l~~~i~~~~~~~~~~ 173 (320)
.+..+++.|+|...|+++++ +|+.+... .+..+.+++.+.|+..+......
T Consensus 83 ~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 83 KAKEHGYPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHHCCCCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 12356788999999999999 34433221 12246688999999888765443
No 110
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.87 E-value=8.5e-09 Score=82.36 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=49.7
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcC-CCCe--EEEeccCCChhHHHhCCCCccCeEEEE
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYS-SIPH--FAIEESAIRPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~-~~~~--v~~~~~~~~~~l~~~~~V~~~Pti~l~ 142 (320)
|++.++.. ..++++++|+||++||++|+.|...+ .++.+... +.+. +..+..+.+.. ..+ .++||++++
T Consensus 12 ~eeal~~A-k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~vPtivFl 86 (130)
T cd02960 12 YEEGLYKA-KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QYVPRIMFV 86 (130)
T ss_pred HHHHHHHH-HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cccCeEEEE
Confidence 55554444 57789999999999999999997754 23333332 2232 22222222222 234 689999999
Q ss_pred --eCceeEEEeCC
Q 020846 143 --NSSMRVRYHGS 153 (320)
Q Consensus 143 --~g~~~~~~~G~ 153 (320)
+|+.+.+..|.
T Consensus 87 d~~g~vi~~i~Gy 99 (130)
T cd02960 87 DPSLTVRADITGR 99 (130)
T ss_pred CCCCCCccccccc
Confidence 67666665553
No 111
>smart00594 UAS UAS domain.
Probab=98.84 E-value=3e-08 Score=78.95 Aligned_cols=94 Identities=14% Similarity=0.237 Sum_probs=67.3
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCC-CCeEEEe-ccCCChhHHHhCCCCccCeEEEE-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS-IPHFAIE-ESAIRPSILSKYGVHGFPTLFLL- 142 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~-~~~v~~~-~~~~~~~l~~~~~V~~~Pti~l~- 142 (320)
|+++.+.. .+.+|+++|+|+++||+.|+.+.... .++.+.+.. .+.+..+ +..+...++.+|+++++|++.++
T Consensus 16 ~~~a~~~A-k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 16 LEAAKQEA-SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred HHHHHHHH-HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 66665544 46778999999999999999996543 333333333 2333332 23345789999999999999999
Q ss_pred -eC-c----eeEEEeCCCCHHHHHHHH
Q 020846 143 -NS-S----MRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 143 -~g-~----~~~~~~G~~~~~~l~~~i 163 (320)
++ . ...+..|..+.++|+.++
T Consensus 95 ~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 95 PRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred cCCCceeEEEeccccCCCCHHHHHHhh
Confidence 43 1 355788999999998876
No 112
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.7e-09 Score=87.73 Aligned_cols=93 Identities=20% Similarity=0.378 Sum_probs=74.6
Q ss_pred CCCCCccEEE-eCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHh
Q 020846 53 NDFQDIVGVI-EGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSK 130 (320)
Q Consensus 53 ~~~~~~v~~l-~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~ 130 (320)
.+.++.++.. +++. +++. .-.+....|+|.|||.|.+.|++..|.|.+|+.+|.. ...++.+|....++.+++
T Consensus 120 y~gpe~ikyf~~~q~--~dee---l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~k 194 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQL--EDEE---LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAK 194 (265)
T ss_pred cCCchheeeecchhh--HHHH---hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHh
Confidence 3445556666 4444 4433 2456778999999999999999999999999999975 678888899899999999
Q ss_pred CCCC------ccCeEEEE-eCceeEEE
Q 020846 131 YGVH------GFPTLFLL-NSSMRVRY 150 (320)
Q Consensus 131 ~~V~------~~Pti~l~-~g~~~~~~ 150 (320)
|+|. ..||+++| +|+++.+.
T Consensus 195 fris~s~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 195 FRISLSPGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred eeeccCcccccCCeEEEEccchhhhcC
Confidence 9986 69999999 77776554
No 113
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.81 E-value=6.1e-10 Score=87.39 Aligned_cols=67 Identities=7% Similarity=0.147 Sum_probs=55.0
Q ss_pred CCCCCCCCCChhhh---ccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------H-HHH
Q 020846 169 MNTASLDKISPDKV---GKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------L-LRL 228 (320)
Q Consensus 169 ~~~~~l~~~~~~~~---~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~-~~~ 228 (320)
..+..+++++|++. +.+...+++.||+ |||++|+.+ .|.|+++|..|. + .+|
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA------~WC~~Ck~l--~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~ 80 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYA------PWDAQSQAA--RQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQK 80 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEEC------CCCHHHHHH--HHHHHHHHHHhcCCeEEEEEECCCChHHHHHhc
Confidence 44566788899987 3455558999986 999999999 999999999873 3 478
Q ss_pred HhhhchhHhhhhchh
Q 020846 229 VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~ 243 (320)
+|.+|||+++|.+|.
T Consensus 81 ~I~~~PTl~lf~~g~ 95 (113)
T cd03006 81 HFFYFPVIHLYYRSR 95 (113)
T ss_pred CCcccCEEEEEECCc
Confidence 999999999997765
No 114
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.77 E-value=7.6e-08 Score=82.19 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=72.6
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeE-EEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccC-----C--C-h-
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESA-----I--R-P- 125 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~v-lV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~-----~--~-~- 125 (320)
.+..++++.+++.++ .++++ ++.|||+||++|+...|.++++.++|++ ...+++. ++ + . .
T Consensus 24 ~l~d~~G~~vsLs~~-------~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs-~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 24 EAIDIDGQLVQLSKF-------KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP-CNQFMEQEPWDEPE 95 (183)
T ss_pred EeEcCCCCEEeHHHh-------CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe-cccccccCCCCHHH
Confidence 345567888888887 56654 5667999999999999999999999874 4455552 11 0 0 0
Q ss_pred --hH-HHh------------------------------------CCCCccCe---EEEE--eCceeEEEeCCCCHHHHHH
Q 020846 126 --SI-LSK------------------------------------YGVHGFPT---LFLL--NSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 126 --~l-~~~------------------------------------~~V~~~Pt---i~l~--~g~~~~~~~G~~~~~~l~~ 161 (320)
.. .++ +++.++|+ .+++ +|..+.++.|..+.+++.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 00 111 24557895 4677 6888889999999999999
Q ss_pred HHHHhhC
Q 020846 162 FYSDVTG 168 (320)
Q Consensus 162 ~i~~~~~ 168 (320)
.|.+.+.
T Consensus 176 ~I~~ll~ 182 (183)
T PTZ00256 176 DIEKLLN 182 (183)
T ss_pred HHHHHhc
Confidence 8887653
No 115
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.74 E-value=2.1e-08 Score=74.07 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=47.1
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHc-CCCCeEEEeccCCChhHHHhCCCCccCeEEEEe
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLY-SSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN 143 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~-~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~ 143 (320)
+++++... .+.+++++|+|+|+||++|+.+...+ .++.+.+ ++.+.+.++. +...... ++...++|++++++
T Consensus 6 ~~~al~~A-~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~-~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 6 YEEALAEA-KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDV-DDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHH-HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEET-TTHHHHH-HHHHCSSSEEEEEE
T ss_pred HHHHHHHH-HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEc-CCCChhH-HhCCccCCEEEEeC
Confidence 55554444 56789999999999999999998777 4455422 3455565543 3332222 22226799999874
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.74 E-value=5.3e-08 Score=74.76 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=63.5
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC-CChhHHHhCC--CCccCeEEEE-eCceeEEEeC--CC
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYG--VHGFPTLFLL-NSSMRVRYHG--SR 154 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~--V~~~Pti~l~-~g~~~~~~~G--~~ 154 (320)
++++++.||++||++|+.+.|.+.++++++.....+...+.. ..+.+...|+ +..+|++.++ ++.....+.+ ..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 789999999999999999999999999999863333333554 6889999999 9999999887 6665545555 44
Q ss_pred CHHHHHHHH
Q 020846 155 TLDSLVAFY 163 (320)
Q Consensus 155 ~~~~l~~~i 163 (320)
....+....
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 555554433
No 117
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.69 E-value=5.1e-09 Score=89.91 Aligned_cols=103 Identities=17% Similarity=0.327 Sum_probs=86.9
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCCccC
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVHGFP 137 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~~~P 137 (320)
++.++.++ +..+ -..-++++|+|||||.|+...|.|+.++.--.+ -+.++.+|...++-|.-+|-|...|
T Consensus 26 ~~~~~een--w~~~-------l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 26 LTRIDEEN--WKEL-------LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred eEEecccc--hhhh-------hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecc
Confidence 45556666 8777 346799999999999999999999999876555 4678888888999999999999999
Q ss_pred eEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 138 TLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 138 ti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
||+=...++.-+|.|.|+.++++.|+...--..
T Consensus 97 tIYHvkDGeFrrysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 97 TIYHVKDGEFRRYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred eEEEeeccccccccCcccchhHHHHHHhhhhhc
Confidence 998886678889999999999999998765443
No 118
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.66 E-value=2.7e-07 Score=77.64 Aligned_cols=98 Identities=16% Similarity=0.085 Sum_probs=68.8
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCC-CHHHHhhHHHHHHHHHHcCCCCeEEEec------------------
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEE------------------ 120 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~w-C~~Ck~~~p~~~~la~~~~~~~~v~~~~------------------ 120 (320)
...+++.+++.++ .+++++|.||++| |++|.+..|.++++++++.+...+++..
T Consensus 30 ~~~~g~~v~l~~~-------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~ 102 (167)
T PRK00522 30 VANDLSDVSLADF-------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENV 102 (167)
T ss_pred EcCCCcEEehHHh-------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCc
Confidence 3345666667766 5789999999999 9999999999999999986554444421
Q ss_pred ---cC-CChhHHHhCCCCccC---------eEEEE--eCceeEEEeC-----CCCHHHHHHHHH
Q 020846 121 ---SA-IRPSILSKYGVHGFP---------TLFLL--NSSMRVRYHG-----SRTLDSLVAFYS 164 (320)
Q Consensus 121 ---~~-~~~~l~~~~~V~~~P---------ti~l~--~g~~~~~~~G-----~~~~~~l~~~i~ 164 (320)
.| ....+++.||+...| +.+++ +|.....+.+ ..+.+++.++++
T Consensus 103 ~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 103 ITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred eEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 11 123678889998877 88888 5666655533 235666666654
No 119
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.65 E-value=2e-07 Score=75.99 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=63.6
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCC-CHHHHhhHHHHHHHHHHcCCCCeEEEecc----------------
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASW-CPFSRNFRPSFSVLSSLYSSIPHFAIEES---------------- 121 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~w-C~~Ck~~~p~~~~la~~~~~~~~v~~~~~---------------- 121 (320)
+...+++.+++.++ .+++++|.||+.| |++|+...|.++++.++++++..+++.-.
T Consensus 11 l~~~~g~~~~l~~~-------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~ 83 (143)
T cd03014 11 LVTSDLSEVSLADF-------AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDN 83 (143)
T ss_pred EECCCCcEEeHHHh-------CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCC
Confidence 34455667777776 5789999999999 69999999999999999987655554311
Q ss_pred -----CCC-hhHHHhCCCCc------cCeEEEE--eCceeEEEeC
Q 020846 122 -----AIR-PSILSKYGVHG------FPTLFLL--NSSMRVRYHG 152 (320)
Q Consensus 122 -----~~~-~~l~~~~~V~~------~Pti~l~--~g~~~~~~~G 152 (320)
|.. ..+++.||+.. .|+.+++ +|.....+.|
T Consensus 84 ~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 84 VTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred ceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 111 45677788763 6888888 5666666665
No 120
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.65 E-value=5.2e-09 Score=80.65 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=54.7
Q ss_pred CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhc
Q 020846 171 TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFL 233 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~ 233 (320)
+..++.++|++.+.+... +++.|++ +||++|+.+ .|.|+.++..|. +.+++|.++
T Consensus 3 v~~l~~~~f~~~i~~~~~~v~v~f~a------~wC~~C~~~--~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~ 74 (104)
T cd03004 3 VITLTPEDFPELVLNRKEPWLVDFYA------PWCGPCQAL--LPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAY 74 (104)
T ss_pred ceEcCHHHHHHHHhcCCCeEEEEEEC------CCCHHHHHH--HHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcc
Confidence 445677889988765554 8888885 999999999 999999999983 378999999
Q ss_pred hhHhhhhchh
Q 020846 234 PTLLIFAQFT 243 (320)
Q Consensus 234 Pti~~~~~~~ 243 (320)
||+.+|.+|.
T Consensus 75 Pt~~~~~~g~ 84 (104)
T cd03004 75 PTIRLYPGNA 84 (104)
T ss_pred cEEEEEcCCC
Confidence 9999999884
No 121
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.64 E-value=1.5e-07 Score=76.27 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=73.2
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEEec---------------
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE--------------- 120 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~--------------- 120 (320)
+..++++.+++.+. .+++++|.|| +.||+.|....|.+.++.+++. ++..+++..
T Consensus 8 l~~~~g~~~~l~~~-------~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 80 (140)
T cd03017 8 LPDQDGETVSLSDL-------RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGL 80 (140)
T ss_pred ccCCCCCEEeHHHh-------CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 34456777778777 4789999999 5899999999999999998875 333333311
Q ss_pred -----cCCChhHHHhCCCCcc---------CeEEEE--eCceeEEEeCCCCHHHHHHHH
Q 020846 121 -----SAIRPSILSKYGVHGF---------PTLFLL--NSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 121 -----~~~~~~l~~~~~V~~~---------Pti~l~--~g~~~~~~~G~~~~~~l~~~i 163 (320)
+|.+..+.+.||+... |+++++ +|+....+.|....+++.+-+
T Consensus 81 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 81 PFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred CceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 1234578888999988 899999 588888999987776666543
No 122
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.63 E-value=6.5e-09 Score=79.75 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=56.0
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhch
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLP 234 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~P 234 (320)
+..++.++|+..+.+...+++.|++ |||++|+.+ .|.|+.+|..|. +.+++|.+||
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a------~wC~~C~~~--~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P 74 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYS------PRCSHCHDL--APTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYP 74 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEEC------CCChHHHHh--HHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccC
Confidence 4556788999988776568889985 999999999 999999999984 3889999999
Q ss_pred hHhhhhchh
Q 020846 235 TLLIFAQFT 243 (320)
Q Consensus 235 ti~~~~~~~ 243 (320)
|+.+|.+|.
T Consensus 75 t~~~~~~g~ 83 (101)
T cd03003 75 SLYVFPSGM 83 (101)
T ss_pred EEEEEcCCC
Confidence 999998875
No 123
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.61 E-value=2.9e-07 Score=77.83 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=69.5
Q ss_pred cchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcCC--CCeEEEe--c-------------------
Q 020846 65 DEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E------------------- 120 (320)
Q Consensus 65 ~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~--~------------------- 120 (320)
+.+++.++ .+++++|.|| +.||++|....|.+++++++|.+ +..+.+. .
T Consensus 20 ~~~~l~~~-------~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~ 92 (173)
T cd03015 20 KEISLSDY-------KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGK 92 (173)
T ss_pred eEEehHHh-------CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccC
Confidence 45567666 5689999999 89999999999999999999853 3333331 1
Q ss_pred ------cCCChhHHHhCCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 020846 121 ------SAIRPSILSKYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (320)
Q Consensus 121 ------~~~~~~l~~~~~V~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~~ 167 (320)
.|....+.++|++. ..|+++++ +|.....+.+ .++.+++.+.|+...
T Consensus 93 ~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 93 INFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred cceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 12234677888886 57899999 5777777744 346788888887654
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.61 E-value=5.7e-08 Score=76.92 Aligned_cols=81 Identities=25% Similarity=0.610 Sum_probs=60.3
Q ss_pred eCcchhHHHHHhHHhhcCCCeEEEEEEcC-CCHHHHhhHHHHHHHHHHcC--CCCeEEEecc------------------
Q 020846 63 EGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYS--SIPHFAIEES------------------ 121 (320)
Q Consensus 63 ~~~~~~f~~~~~~~~~~~~~~vlV~Fya~-wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~~------------------ 121 (320)
++++++++++ .+++++|.||+. ||++|+...+.++++.++|+ ++..+.+...
T Consensus 14 ~g~~~~l~~l-------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~ 86 (124)
T PF00578_consen 14 DGKTVSLSDL-------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPV 86 (124)
T ss_dssp TSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEE
T ss_pred CCCEEEHHHH-------CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhcccccc
Confidence 4555556555 669999999999 99999999999999999887 4444444321
Q ss_pred --CCChhHHHhCCCC------ccCeEEEEeCceeEEE
Q 020846 122 --AIRPSILSKYGVH------GFPTLFLLNSSMRVRY 150 (320)
Q Consensus 122 --~~~~~l~~~~~V~------~~Pti~l~~g~~~~~~ 150 (320)
|.+..+++.|++. .+|++++++.+-.++|
T Consensus 87 ~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 87 LSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp EEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred ccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 2345788999999 9999999954444433
No 125
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.58 E-value=8.2e-09 Score=80.23 Aligned_cols=65 Identities=20% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------------HHHH
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------------LLRL 228 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------------~~~~ 228 (320)
+..++.++|++.+.....+++.|++ |||.+|+.+ .|.|+.+|..+. +.+|
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a------~wC~~C~~~--~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~ 74 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYA------DWCRFSQML--HPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY 74 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEEC------CCCHHHHhh--HHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC
Confidence 4456788999988766668888885 999999999 999999997641 2789
Q ss_pred HhhhchhHhhhhchh
Q 020846 229 VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~ 243 (320)
+|.+|||+.+|.+|.
T Consensus 75 ~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 75 RINKYPTLKLFRNGM 89 (108)
T ss_pred CCCcCCEEEEEeCCc
Confidence 999999999998876
No 126
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.58 E-value=3.5e-07 Score=66.50 Aligned_cols=73 Identities=19% Similarity=0.349 Sum_probs=56.8
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeC-CCCHHHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHG-SRTLDSLVAFYS 164 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G-~~~~~~l~~~i~ 164 (320)
|.+++++|++|..+...+++++..+ + ..+.+.+....+++ .+|||.++|++++ ||+ ..+.| ..+.++|.++|+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~~~~~-~~ygv~~vPalvI-ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIEDFEEI-EKYGVMSVPALVI-NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTTHHHH-HHTT-SSSSEEEE-TTE--EEEESS--HHHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccCHHHH-HHcCCCCCCEEEE-CCE--EEEEecCCCHHHHHHHhC
Confidence 3447888999999999999999998 4 66677777555666 9999999999954 764 66889 678899998874
No 127
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.55 E-value=4.4e-07 Score=64.62 Aligned_cols=69 Identities=16% Similarity=0.366 Sum_probs=49.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (320)
+..|+++||++|+++.+.+++. ++. +...|.+.++ ++.+++++.++|++++. |+. ..| .+.+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~i~-~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~-~~~---~~g-~~~~~i~ 70 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----GIA-FEEIDVEKDSAAREEVLKVLGQRGVPVIVIG-HKI---IVG-FDPEKLD 70 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCe-EEEEeccCCHHHHHHHHHHhCCCcccEEEEC-CEE---Eee-CCHHHHH
Confidence 5679999999999999988763 332 3333554443 35677999999999874 432 555 5778888
Q ss_pred HHHH
Q 020846 161 AFYS 164 (320)
Q Consensus 161 ~~i~ 164 (320)
++|+
T Consensus 71 ~~i~ 74 (74)
T TIGR02196 71 QLLE 74 (74)
T ss_pred HHhC
Confidence 8763
No 128
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.52 E-value=6.9e-07 Score=81.17 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=91.9
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhH------H-HHHHHHHHcCC-CCeEEEeccCCChhHH
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFR------P-SFSVLSSLYSS-IPHFAIEESAIRPSIL 128 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~------p-~~~~la~~~~~-~~~v~~~~~~~~~~l~ 128 (320)
..|..++.+| |.++ .++.+..+|+||.|-- .-+... . .++-.|+.... -+.++.+|...+..++
T Consensus 34 DRVi~LneKN--fk~~-----lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klA 105 (383)
T PF01216_consen 34 DRVIDLNEKN--FKRA-----LKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLA 105 (383)
T ss_dssp --CEEE-TTT--HHHH-----HHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHH
T ss_pred cceEEcchhH--HHHH-----HHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHH
Confidence 3455566666 8888 3455788888998863 333322 2 23333444432 4678888999999999
Q ss_pred HhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCCCCCCCC-CChhhhccCC-CcccccccCCCcCCcccCCC
Q 020846 129 SKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTASLDK-ISPDKVGKAS-NHEKHNNTEEESCPFSWARS 206 (320)
Q Consensus 129 ~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~-~~~~~~~~~~-~~~~~~f~~~~~~~~~wc~~ 206 (320)
+++|+...+++++|..+.++.|.|.++++.|++||.+.+...+..++. ..+..+-.-. ...++-|+.+..+
T Consensus 106 KKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s------- 178 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDS------- 178 (383)
T ss_dssp HHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTS-------
T ss_pred HhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCc-------
Confidence 999999999999998889999999999999999999999988777763 3343343322 2366666653222
Q ss_pred cccccChHHHHHHHHHHH
Q 020846 207 PENLLQQETYLALATAFV 224 (320)
Q Consensus 207 c~~~~~~~~~~~la~~f~ 224 (320)
+. -..|+..|..|.
T Consensus 179 -~~---yk~FeeAAe~F~ 192 (383)
T PF01216_consen 179 -EH---YKEFEEAAEHFQ 192 (383)
T ss_dssp -HH---HHHHHHHHHHCT
T ss_pred -HH---HHHHHHHHHhhc
Confidence 11 345667777764
No 129
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.50 E-value=1.1e-06 Score=76.76 Aligned_cols=83 Identities=24% Similarity=0.441 Sum_probs=65.3
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe-cc---------CCChhHHHhCCCCccCeEEEE--eC-ce
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ES---------AIRPSILSKYGVHGFPTLFLL--NS-SM 146 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~-~~---------~~~~~l~~~~~V~~~Pti~l~--~g-~~ 146 (320)
.++.-|+.||.+.|++|+.+.|++..++++| |+..+.+. |. -.+..+++++||..+|+++++ ++ +.
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeE
Confidence 4788999999999999999999999999999 54433332 21 135789999999999999999 33 34
Q ss_pred eEEEeCCCCHHHHHHHH
Q 020846 147 RVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 147 ~~~~~G~~~~~~l~~~i 163 (320)
...-.|..+.++|.+-|
T Consensus 198 ~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 198 YPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEEeeecCCHHHHHHhh
Confidence 45567889999987643
No 130
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.48 E-value=1.2e-06 Score=71.56 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=37.4
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEE
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAI 118 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~ 118 (320)
..++++.+++.+. ...+..+++.|+++||+.|+...|.+.++.+++. ++..+++
T Consensus 8 ~~~~g~~~~l~~~-----~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V 63 (149)
T cd02970 8 PDAGGETVTLSAL-----LGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAV 63 (149)
T ss_pred cCCCCCEEchHHH-----hcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 3356667667665 2233444555569999999999999999999984 4445544
No 131
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.47 E-value=1.6e-06 Score=71.04 Aligned_cols=98 Identities=17% Similarity=0.284 Sum_probs=65.8
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEEec----------------
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE---------------- 120 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~---------------- 120 (320)
...+++.++++++ ..+++++|.|| ++||+.|....|.++++.+++. ++..+++..
T Consensus 13 ~~~~g~~v~l~~~------~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~ 86 (149)
T cd03018 13 PDQNGQEVRLSEF------RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLT 86 (149)
T ss_pred cCCCCCEEeHHHH------cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCC
Confidence 3356777778777 23378888887 9999999999999999999886 343333321
Q ss_pred ----cCCC--hhHHHhCCCCc----cC--eEEEE--eCceeEEEeCC----CCHHHHHHHH
Q 020846 121 ----SAIR--PSILSKYGVHG----FP--TLFLL--NSSMRVRYHGS----RTLDSLVAFY 163 (320)
Q Consensus 121 ----~~~~--~~l~~~~~V~~----~P--ti~l~--~g~~~~~~~G~----~~~~~l~~~i 163 (320)
+|.. ..+.+.|++.. +| +++++ +|+....+.|. ++..++.+.|
T Consensus 87 ~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 87 FPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 1223 56778888873 33 77777 57777777764 3445554443
No 132
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.46 E-value=2.1e-06 Score=70.89 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=67.6
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcC-CCHHHHhhHHHHHHHHHHcCC--CCeEEEec---------------
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYAS-WCPFSRNFRPSFSVLSSLYSS--IPHFAIEE--------------- 120 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~-wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~--------------- 120 (320)
+..++++.++++++ .+++++|.||+. ||+.|....+.++++.+++.+ ...+++..
T Consensus 15 l~~~~G~~~~l~~~-------~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~ 87 (154)
T PRK09437 15 LPDQDGEQVSLTDF-------QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELL 87 (154)
T ss_pred eeCCCCCEEeHHHh-------CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCC
Confidence 44567777778777 578999999976 688899999999999888753 33333321
Q ss_pred -----cCCChhHHHhCCCCcc------------CeEEEE--eCceeEEEeCCCCHHHHHH
Q 020846 121 -----SAIRPSILSKYGVHGF------------PTLFLL--NSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 121 -----~~~~~~l~~~~~V~~~------------Pti~l~--~g~~~~~~~G~~~~~~l~~ 161 (320)
+|....+.++||+... |+.+++ +|+.+..|.|....+.+.+
T Consensus 88 ~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 88 NFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred CCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 1233567888888654 667777 6788888888665554333
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.46 E-value=3.5e-07 Score=74.65 Aligned_cols=68 Identities=24% Similarity=0.505 Sum_probs=50.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC------CCeEEEeccCC----------------------ChhHHHhC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS------IPHFAIEESAI----------------------RPSILSKY 131 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~------~~~v~~~~~~~----------------------~~~l~~~~ 131 (320)
.++.+.++|-|.|||+||.+-|.+.++.++... +++|..+...+ .++++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 569999999999999999999988887776553 23333332211 13688999
Q ss_pred CCCccCeEEEE--eCcee
Q 020846 132 GVHGFPTLFLL--NSSMR 147 (320)
Q Consensus 132 ~V~~~Pti~l~--~g~~~ 147 (320)
+|.++|++++. +|+.+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 99999999998 45444
No 134
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.42 E-value=4.4e-06 Score=71.59 Aligned_cols=86 Identities=9% Similarity=0.146 Sum_probs=62.3
Q ss_pred CCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEEe--c----------------------cCCChhHHHhCC
Q 020846 80 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E----------------------SAIRPSILSKYG 132 (320)
Q Consensus 80 ~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~----------------------~~~~~~l~~~~~ 132 (320)
.+++++|.|| +.||+.|....|.++++.++|. ++..+++. + .|.+..+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 5789999999 9999999999999999998885 34333332 1 112347888999
Q ss_pred CC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHH
Q 020846 133 VH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSD 165 (320)
Q Consensus 133 V~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~ 165 (320)
|. ..|+.+++ +|.....+.+ .++.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 86 46999999 5666655533 3477777777653
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.41 E-value=1.5e-06 Score=58.97 Aligned_cols=59 Identities=37% Similarity=0.768 Sum_probs=44.6
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHH---hCCCCccCeEEEEeC
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILS---KYGVHGFPTLFLLNS 144 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~---~~~V~~~Pti~l~~g 144 (320)
++.||++||++|+++.+.++++.... ....+...+++....... .+++.++|+++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLN-KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhC-CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 57899999999999999999993333 334444446666655544 889999999999943
No 136
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.39 E-value=2.1e-08 Score=76.51 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCCCCCChhhhccC-CCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhch
Q 020846 172 ASLDKISPDKVGKA-SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLP 234 (320)
Q Consensus 172 ~~l~~~~~~~~~~~-~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~P 234 (320)
..++.++|++.+.+ ...+++.|+. +||++|+.+ .|.++.++..+. +.+|+|.++|
T Consensus 2 ~~lt~~~f~~~i~~~~~~vvv~f~~------~~C~~C~~~--~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~P 73 (103)
T PF00085_consen 2 IVLTDENFEKFINESDKPVVVYFYA------PWCPPCKAF--KPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVP 73 (103)
T ss_dssp EEESTTTHHHHHTTTSSEEEEEEES------TTSHHHHHH--HHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSS
T ss_pred EECCHHHHHHHHHccCCCEEEEEeC------CCCCccccc--cceecccccccccccccchhhhhccchhhhccCCCCCC
Confidence 34678899999988 4448888885 999999999 999999999985 3999999999
Q ss_pred hHhhhhchh
Q 020846 235 TLLIFAQFT 243 (320)
Q Consensus 235 ti~~~~~~~ 243 (320)
|+.+|.+|.
T Consensus 74 t~~~~~~g~ 82 (103)
T PF00085_consen 74 TIIFFKNGK 82 (103)
T ss_dssp EEEEEETTE
T ss_pred EEEEEECCc
Confidence 999998886
No 137
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.39 E-value=1.3e-06 Score=74.33 Aligned_cols=53 Identities=13% Similarity=0.281 Sum_probs=42.9
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEE
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAI 118 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~ 118 (320)
.+..++|+.+++.++ .++++||.|||+||+.|++ .|.++++.++|.+ ...+++
T Consensus 9 ~~~~~~G~~v~Ls~~-------~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~ 63 (183)
T PRK10606 9 VVTTIDGEVTTLEKY-------AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGF 63 (183)
T ss_pred EeECCCCCEEeHHHh-------CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEe
Confidence 455677888888888 6799999999999999975 8899999999974 444454
No 138
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.38 E-value=4.8e-08 Score=86.75 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=41.9
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------------------HHHHhhhchhHhhhhchh
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------LRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------------------~~~~i~~~Pti~~~~~~~ 243 (320)
+++.||+ |||+|||++ .|+|..++-.... .+++|.+||||++|..+.
T Consensus 46 W~VdFYA------PWC~HCKkL--ePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 46 WFVDFYA------PWCAHCKKL--EPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH 111 (468)
T ss_pred EEEEeec------hhhhhcccc--cchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCe
Confidence 8999996 999999999 9999999877742 889999999999998764
No 139
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.38 E-value=8.3e-08 Score=74.36 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------------HHHHHhhh
Q 020846 172 ASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIF 232 (320)
Q Consensus 172 ~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------------~~~~~i~~ 232 (320)
..++.++|++.+.+... +++.|++ |||++|+.+ .|.|+.++..+. +.+++|.+
T Consensus 3 ~~l~~~~~~~~i~~~~~~~lv~f~a------~wC~~C~~~--~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~ 74 (109)
T cd03002 3 YELTPKNFDKVVHNTNYTTLVEFYA------PWCGHCKNL--KPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG 74 (109)
T ss_pred EEcchhhHHHHHhcCCCeEEEEEEC------CCCHHHHhh--ChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc
Confidence 45678899998876666 8888885 999999999 999999998873 36899999
Q ss_pred chhHhhhhchh
Q 020846 233 LPTLLIFAQFT 243 (320)
Q Consensus 233 ~Pti~~~~~~~ 243 (320)
+||+.+|.+|.
T Consensus 75 ~Pt~~~~~~~~ 85 (109)
T cd03002 75 FPTLKVFRPPK 85 (109)
T ss_pred CCEEEEEeCCC
Confidence 99999998875
No 140
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.38 E-value=5.3e-08 Score=93.75 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=65.6
Q ss_pred CCCCCCCCChhhhcc---CCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------------------HH
Q 020846 170 NTASLDKISPDKVGK---ASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------LR 227 (320)
Q Consensus 170 ~~~~l~~~~~~~~~~---~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------------------~~ 227 (320)
.+..++..+|++.+. ....+++.||+ |||++|+.| .|.|+++|..|.. .+
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA------pWC~~Ck~m--~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~ 423 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYA------PWCPFCQAM--EASYLELAEKLAGSGVKVAKFRADGDQKEFAKQE 423 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEEC------CCChHHHHH--HHHHHHHHHHhccCCcEEEEEECCCCccHHHHHH
Confidence 345577889999875 33338889986 999999999 9999999998721 46
Q ss_pred HHhhhchhHhhhhchhhhhhhhhccccccccchhhHh--hHHHHHH-HHhc
Q 020846 228 LVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYL--NRAIQLF-KTLN 275 (320)
Q Consensus 228 ~~i~~~Pti~~~~~~~~~~~~~~~~~~~~~~~~~~y~--~r~~~~~-~~l~ 275 (320)
|+|.+|||+++|.+|. ..+..|. .|..+.+ .|+|
T Consensus 424 ~~I~~~PTii~Fk~g~--------------~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 424 LQLGSFPTILFFPKHS--------------SRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred cCCCccceEEEEECCC--------------CCceeCCCCCCCHHHHHHHHH
Confidence 8999999999999987 4567786 3665555 7777
No 141
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.36 E-value=1.2e-06 Score=63.23 Aligned_cols=69 Identities=13% Similarity=0.276 Sum_probs=46.2
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHh-----CCCCccCeEEEE-eCceeEEEeCCCCHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK-----YGVHGFPTLFLL-NSSMRVRYHGSRTLDS 158 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~-----~~V~~~Pti~l~-~g~~~~~~~G~~~~~~ 158 (320)
++.||++||++|+++.+.++++...|. ..|.+.++..... +++.++|+++ + +|... ...+..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~------~idi~~~~~~~~~~~~~~~~~~~vP~i~-~~~g~~l----~~~~~~~ 70 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYE------WVDIEEDEGAADRVVSVNNGNMTVPTVK-FADGSFL----TNPSAAQ 70 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceE------EEeCcCCHhHHHHHHHHhCCCceeCEEE-ECCCeEe----cCCCHHH
Confidence 678999999999999999987754442 2344444444444 4899999974 5 55332 2455566
Q ss_pred HHHHHH
Q 020846 159 LVAFYS 164 (320)
Q Consensus 159 l~~~i~ 164 (320)
+.+.++
T Consensus 71 ~~~~l~ 76 (77)
T TIGR02200 71 VKAKLQ 76 (77)
T ss_pred HHHHhh
Confidence 766654
No 142
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.36 E-value=5.5e-08 Score=76.99 Aligned_cols=68 Identities=15% Similarity=0.030 Sum_probs=54.6
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCC--CcccccChHHHHHHHHHHH------------------HHHHHh
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWAR--SPENLLQQETYLALATAFV------------------LLRLVY 230 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~--~c~~~~~~~~~~~la~~f~------------------~~~~~i 230 (320)
+..+++++|++.+.+++..++.||. + +||+ ||++++..|..+++|..++ ..+|+|
T Consensus 11 v~~lt~~nF~~~v~~~~~~vvv~f~---a--~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 11 VIDLNEKNYKQVLKKYDVLCLLYHE---P--VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred eeeCChhhHHHHHHhCCceEEEEEC---C--CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 4456889999999988886666653 3 7776 4995444899999999983 299999
Q ss_pred hhchhHhhhhchh
Q 020846 231 IFLPTLLIFAQFT 243 (320)
Q Consensus 231 ~~~Pti~~~~~~~ 243 (320)
.++||+++|.+|.
T Consensus 86 ~~iPTl~lfk~G~ 98 (120)
T cd03065 86 DEEDSIYVFKDDE 98 (120)
T ss_pred ccccEEEEEECCE
Confidence 9999999999886
No 143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.35 E-value=4.1e-06 Score=83.60 Aligned_cols=135 Identities=14% Similarity=0.120 Sum_probs=95.1
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE--eCc-eeEEEeCCCCH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL--NSS-MRVRYHGSRTL 156 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~--~g~-~~~~~~G~~~~ 156 (320)
.+.+.++.|+.+-|..|..+...++++++. .+.+.+...|...+..++++|+|...|++.++ ++. .-++|.|-..-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G 443 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASL-SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG 443 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhc-CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence 344568888898999999999999999855 45566666677778899999999999999998 232 34899998777
Q ss_pred HHHHHHHHHhhCCC--CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 157 DSLVAFYSDVTGMN--TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 157 ~~l~~~i~~~~~~~--~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
.++..||...+... ...++++..+.+-.-... .+..|.. |+|..|.+. ......+|..-
T Consensus 444 ~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~------~~C~~Cp~~--~~~~~~~~~~~ 505 (555)
T TIGR03143 444 HELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVS------LSCTLCPDV--VLAAQRIASLN 505 (555)
T ss_pred HhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEC------CCCCCcHHH--HHHHHHHHHhC
Confidence 77777777765432 334444444444332233 3333332 889999888 66677777654
No 144
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.34 E-value=6.6e-08 Score=75.34 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=51.7
Q ss_pred CCCCCCCChhhhccC---CCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH------------------H-HH
Q 020846 171 TASLDKISPDKVGKA---SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL------------------L-RL 228 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~------------------~-~~ 228 (320)
+..++.++|+.++.. ...+++.|+. |||++|+.+ .|.|..++..|.. . ++
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a------~wC~~C~~~--~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~ 74 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYA------PWCPFCQAM--EASYEELAEKLAGSNVKVAKFNADGEQREFAKEEL 74 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEEC------CCCHHHHHH--hHHHHHHHHHhccCCeEEEEEECCccchhhHHhhc
Confidence 456677788888742 3347888875 999999999 9999999988732 2 47
Q ss_pred HhhhchhHhhhhchh
Q 020846 229 VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~ 243 (320)
+|..|||+.+|.+|.
T Consensus 75 ~v~~~Pti~~f~~~~ 89 (109)
T cd02993 75 QLKSFPTILFFPKNS 89 (109)
T ss_pred CCCcCCEEEEEcCCC
Confidence 899999999998876
No 145
>PLN02309 5'-adenylylsulfate reductase
Probab=98.33 E-value=6.6e-08 Score=93.08 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=66.2
Q ss_pred CCCCCCCCChhhhcc---CCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------------------HH
Q 020846 170 NTASLDKISPDKVGK---ASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------LR 227 (320)
Q Consensus 170 ~~~~l~~~~~~~~~~---~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------------------~~ 227 (320)
.+..++.++|++++. ....+++.||+ |||++|+.| .|.|+.+|..|.. .+
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA------pWC~~Cq~m--~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~ 417 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYA------PWCPFCQAM--EASYEELAEKLAGSGVKVAKFRADGDQKEFAKQE 417 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEEC------CCChHHHHH--HHHHHHHHHHhccCCeEEEEEECCCcchHHHHhh
Confidence 345567788888874 33338888986 999999999 9999999998831 25
Q ss_pred HHhhhchhHhhhhchhhhhhhhhccccccccchhhHh-h-HHHHHH-HHhccc
Q 020846 228 LVYIFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTYL-N-RAIQLF-KTLNEP 277 (320)
Q Consensus 228 ~~i~~~Pti~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~-r~~~~~-~~l~~~ 277 (320)
|+|.+|||+++|.+|. ..+..|. + |....+ +|+|.+
T Consensus 418 ~~I~~~PTil~f~~g~--------------~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 LQLGSFPTILLFPKNS--------------SRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCceeeEEEEEeCCC--------------CCeeecCCCCcCHHHHHHHHHHh
Confidence 8999999999999887 5677887 3 655444 888743
No 146
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.5e-05 Score=63.29 Aligned_cols=90 Identities=13% Similarity=0.339 Sum_probs=65.6
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCC-CC--eE----------EEec---cCCChhHHHhCCCCccCe
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS-IP--HF----------AIEE---SAIRPSILSKYGVHGFPT 138 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~-~~--~v----------~~~~---~~~~~~l~~~~~V~~~Pt 138 (320)
...+++.++.|-++.|+.|.++...+ .++.+.+.+ .. .+ .+.+ .....+|++.|+|+++||
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPt 118 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPT 118 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCce
Confidence 45789999999999999999997655 334443333 11 11 1111 112358999999999999
Q ss_pred EEEE--eCceeEEEeCCCCHHHHHHHHHHhh
Q 020846 139 LFLL--NSSMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 139 i~l~--~g~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+++| +|+.+....|..+.+++..-++-..
T Consensus 119 fvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 119 FVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred EEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 9999 6788889999999999887765544
No 147
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.29 E-value=1.2e-07 Score=72.54 Aligned_cols=63 Identities=16% Similarity=0.038 Sum_probs=51.9
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-----------------HHHHHhhhc
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFL 233 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-----------------~~~~~i~~~ 233 (320)
+..++.++|++.+... +++.|++ |||++|+.+ .|.|+.++..+. +.+|+|.++
T Consensus 3 v~~l~~~~f~~~~~~~--~lv~f~a------~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 72 (101)
T cd02994 3 VVELTDSNWTLVLEGE--WMIEFYA------PWCPACQQL--QPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTAL 72 (101)
T ss_pred eEEcChhhHHHHhCCC--EEEEEEC------CCCHHHHHH--hHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCccc
Confidence 4567788999887543 6788885 999999999 999999998763 278999999
Q ss_pred hhHhhhhchh
Q 020846 234 PTLLIFAQFT 243 (320)
Q Consensus 234 Pti~~~~~~~ 243 (320)
||+.++.+|.
T Consensus 73 Pt~~~~~~g~ 82 (101)
T cd02994 73 PTIYHAKDGV 82 (101)
T ss_pred CEEEEeCCCC
Confidence 9999887774
No 148
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.28 E-value=1.1e-07 Score=72.85 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhch
Q 020846 172 ASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLP 234 (320)
Q Consensus 172 ~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~P 234 (320)
..++.+++++.+.+... +++.|++ +||++|+.+ .|.|..++..|. +.+++|.++|
T Consensus 3 ~~l~~~~~~~~i~~~~~~vlv~f~a------~~C~~C~~~--~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P 74 (103)
T cd03001 3 VELTDSNFDKKVLNSDDVWLVEFYA------PWCGHCKNL--APEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFP 74 (103)
T ss_pred EEcCHHhHHHHHhcCCCcEEEEEEC------CCCHHHHHH--hHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccC
Confidence 45667788888766555 7788875 999999999 999999998873 3899999999
Q ss_pred hHhhhhchh
Q 020846 235 TLLIFAQFT 243 (320)
Q Consensus 235 ti~~~~~~~ 243 (320)
|+.+|.+|.
T Consensus 75 ~~~~~~~~~ 83 (103)
T cd03001 75 TIKVFGAGK 83 (103)
T ss_pred EEEEECCCC
Confidence 999999884
No 149
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=7.6e-08 Score=77.86 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=54.6
Q ss_pred CCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH----------------HHHHhhhchh
Q 020846 173 SLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYIFLPT 235 (320)
Q Consensus 173 ~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~----------------~~~~i~~~Pt 235 (320)
..+..+|++.+.+++. ++++|++ +||++|+-+ .|+.+.++..|.+ .+|.|...||
T Consensus 47 ~~s~~~~~~~Vi~S~~PVlVdF~A------~WCgPCk~l--~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPt 118 (150)
T KOG0910|consen 47 VQSDSEFDDKVINSDVPVLVDFHA------EWCGPCKML--GPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPT 118 (150)
T ss_pred ccCHHHHHHHHHccCCCEEEEEec------CcCccHhHh--hHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeE
Confidence 3456678777766666 9999986 999999999 9999999999854 9999999999
Q ss_pred Hhhhhchh
Q 020846 236 LLIFAQFT 243 (320)
Q Consensus 236 i~~~~~~~ 243 (320)
+++|.+|.
T Consensus 119 vlvfknGe 126 (150)
T KOG0910|consen 119 VLVFKNGE 126 (150)
T ss_pred EEEEECCE
Confidence 99999997
No 150
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.26 E-value=3.8e-06 Score=68.11 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=38.0
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHH-HHhhHHHHHHHHHHcCC
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPF-SRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~-Ck~~~p~~~~la~~~~~ 112 (320)
...+++.+++.+. .+++++|.||++||++ |.+..+.++++.+++.+
T Consensus 8 ~~~~g~~~~l~~~-------~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 8 TDQDGRPVTLSDL-------KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred EcCCCCEEchHHh-------CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 3445666666665 5789999999999997 99999999999998864
No 151
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.26 E-value=1.1e-05 Score=72.05 Aligned_cols=88 Identities=24% Similarity=0.372 Sum_probs=67.3
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe-ccC---------CChhHHHhCCCCccCeEEEE--e-Cce
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE-ESA---------IRPSILSKYGVHGFPTLFLL--N-SSM 146 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~-~~~---------~~~~l~~~~~V~~~Pti~l~--~-g~~ 146 (320)
.++.-++.||.+-|++|+++.|++..++++|. +..+.+. |.. .+..+++++||..+|+++++ + ++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45689999999999999999999999999994 4333331 211 23558899999999999999 3 333
Q ss_pred eEEEeCCCCHHHHHHHHHHhhC
Q 020846 147 RVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 147 ~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
...-.|..+.++|.+-|...+.
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHh
Confidence 4455688999999888776653
No 152
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.24 E-value=7.1e-06 Score=73.83 Aligned_cols=105 Identities=20% Similarity=0.291 Sum_probs=71.0
Q ss_pred CccEEEeC-cchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCc
Q 020846 57 DIVGVIEG-DEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHG 135 (320)
Q Consensus 57 ~~v~~l~~-~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~ 135 (320)
+.|..++. +. |-+.+++. ..+..|||.||-+.++.|+.|...+..||.+|+.+.++.+.-. .-+ +..+|.+..
T Consensus 125 G~v~ei~~~e~--~l~~ie~~--~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~-~~~-~~~~f~~~~ 198 (265)
T PF02114_consen 125 GEVYEIDSGEE--FLDAIEKE--SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRAS-KCP-ASENFPDKN 198 (265)
T ss_dssp -SEEE--SHHH--HHHHCCTS--STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEEC-GCC-TTTTS-TTC
T ss_pred ceEEEccChhh--HHHHHhcc--CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehh-ccC-cccCCcccC
Confidence 44555543 44 55552211 2345799999999999999999999999999999887776432 222 678999999
Q ss_pred cCeEEEE-eCceeEEEeC-------CCCHHHHHHHHHHhh
Q 020846 136 FPTLFLL-NSSMRVRYHG-------SRTLDSLVAFYSDVT 167 (320)
Q Consensus 136 ~Pti~l~-~g~~~~~~~G-------~~~~~~l~~~i~~~~ 167 (320)
+||+++| +|..+..+.| ..+.++|..||.++-
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999999 7777777765 346778888887664
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.23 E-value=1.3e-05 Score=69.56 Aligned_cols=95 Identities=14% Similarity=0.243 Sum_probs=66.4
Q ss_pred chhHHHHHhHHhhcCCCeEEE-EEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEE--e---------------------
Q 020846 66 EVSLQMALNMVHKNSHEYVAV-LFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAI--E--------------------- 119 (320)
Q Consensus 66 ~~~f~~~~~~~~~~~~~~vlV-~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~--~--------------------- 119 (320)
.+++.+. .++.++| .|+++||+.|....+.+.++.++|. +...+++ +
T Consensus 19 ~v~l~d~-------~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~ 91 (202)
T PRK13190 19 PIDLSKY-------KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIP 91 (202)
T ss_pred cEeHHHh-------CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCce
Confidence 4556666 4565555 6899999999999999999988885 2333332 1
Q ss_pred ---ccCCChhHHHhCCCC------ccCeEEEE--eCceeEEE----eCCCCHHHHHHHHHHhh
Q 020846 120 ---ESAIRPSILSKYGVH------GFPTLFLL--NSSMRVRY----HGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 120 ---~~~~~~~l~~~~~V~------~~Pti~l~--~g~~~~~~----~G~~~~~~l~~~i~~~~ 167 (320)
-+|.+..+++.||+. .+|+++++ +|...... .++++.+++...|+...
T Consensus 92 fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 92 FPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred EEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 123345788899984 58999999 45444333 34689999999887654
No 154
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.21 E-value=1.5e-05 Score=62.75 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=69.3
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcC----CCHHHHhh--HHHHHHHHHHcCCCCeEEEec-cCCChhHHHhCCCCccCeEEE
Q 020846 69 LQMALNMVHKNSHEYVAVLFYAS----WCPFSRNF--RPSFSVLSSLYSSIPHFAIEE-SAIRPSILSKYGVHGFPTLFL 141 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~----wC~~Ck~~--~p~~~~la~~~~~~~~v~~~~-~~~~~~l~~~~~V~~~Pti~l 141 (320)
|+++++.. .++.|.++|++|++ ||..|+.. .|.+.+.-+. +.+..+.+- ..+..+++..+++.++|++.+
T Consensus 6 ~~eAl~~a-k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~ 82 (116)
T cd02991 6 YSQALNDA-KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAM 82 (116)
T ss_pred HHHHHHHH-HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEE
Confidence 55554444 57789999999999 99999876 3444444332 233333322 234467999999999999999
Q ss_pred E---eCc--eeEEEeCCCCHHHHHHHHHHhhC
Q 020846 142 L---NSS--MRVRYHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 142 ~---~g~--~~~~~~G~~~~~~l~~~i~~~~~ 168 (320)
+ +++ .+.+..|..+.++|...+.....
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 8 333 46789999999999999987653
No 155
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.20 E-value=1.3e-05 Score=64.67 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=62.7
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEEec----------------
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIEE---------------- 120 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~~---------------- 120 (320)
..++++.+++.++ .+++++|.|| +.||+.|....|.+.++.+++. ++..+.+..
T Consensus 8 ~~~~g~~~~l~~~-------~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~ 80 (140)
T cd02971 8 PATDGGEVSLSDF-------KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGL 80 (140)
T ss_pred ccCCCcEEehHHh-------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCC
Confidence 3445677677776 6789999999 7899999999999999999874 333333321
Q ss_pred -----cCCChhHHHhCCCCccC---------eEEEE--eCceeEEEeCCCC
Q 020846 121 -----SAIRPSILSKYGVHGFP---------TLFLL--NSSMRVRYHGSRT 155 (320)
Q Consensus 121 -----~~~~~~l~~~~~V~~~P---------ti~l~--~g~~~~~~~G~~~ 155 (320)
.|.+..+.+.||+...| +++++ +|+....+.|...
T Consensus 81 ~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 81 NFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 12234677778877666 67777 4777777777543
No 156
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.19 E-value=7.5e-06 Score=65.74 Aligned_cols=75 Identities=16% Similarity=0.319 Sum_probs=47.7
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhC---CCCccCeEEEE--eCceeEEEeCC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKY---GVHGFPTLFLL--NSSMRVRYHGS 153 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~---~V~~~Pti~l~--~g~~~~~~~G~ 153 (320)
...+..++.|..+|||.|.+..|.+.++++..++ ..+.+...|++.++..+| |..++||++++ +|++..++. +
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg-e 116 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG-E 116 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE-S
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc-C
Confidence 3556788899999999999999999999999764 445555555667666655 78899999999 345555554 4
Q ss_pred CC
Q 020846 154 RT 155 (320)
Q Consensus 154 ~~ 155 (320)
+.
T Consensus 117 rP 118 (129)
T PF14595_consen 117 RP 118 (129)
T ss_dssp S-
T ss_pred CC
Confidence 43
No 157
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=2.1e-06 Score=73.73 Aligned_cols=79 Identities=15% Similarity=0.272 Sum_probs=66.4
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeCCCCH
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHGSRTL 156 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G~~~~ 156 (320)
.+.++..++.|||+||..|+++..+++.+++.+++...+ ..+.+..+.++..+.|.+.|++.++ .+..+.+..|....
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~-k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~ 92 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFL-KLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPP 92 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheee-eehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence 347889999999999999999999999999998554444 4477889999999999999999999 77777777776544
Q ss_pred H
Q 020846 157 D 157 (320)
Q Consensus 157 ~ 157 (320)
.
T Consensus 93 ~ 93 (227)
T KOG0911|consen 93 F 93 (227)
T ss_pred H
Confidence 3
No 158
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.16 E-value=3.3e-05 Score=60.28 Aligned_cols=101 Identities=24% Similarity=0.392 Sum_probs=69.2
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHH-HHcCC--CC---eEEEecc--CCChhHHHhCCC
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLS-SLYSS--IP---HFAIEES--AIRPSILSKYGV 133 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la-~~~~~--~~---~v~~~~~--~~~~~l~~~~~V 133 (320)
++.++.+|++. ....+.++|.|=... +--.-...|.++| +.... .. .+++.|- .+|.+|+++|+|
T Consensus 7 v~LD~~tFdKv-----i~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i 79 (126)
T PF07912_consen 7 VPLDELTFDKV-----IPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI 79 (126)
T ss_dssp EEESTTHHHHH-----GGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred eeccceehhhe-----eccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence 45666678888 456699999998654 2223445788888 44432 23 3344332 257899999999
Q ss_pred --CccCeEEEE--eCceeEEE--eCCCCHHHHHHHHHHhhCC
Q 020846 134 --HGFPTLFLL--NSSMRVRY--HGSRTLDSLVAFYSDVTGM 169 (320)
Q Consensus 134 --~~~Pti~l~--~g~~~~~~--~G~~~~~~l~~~i~~~~~~ 169 (320)
..+|.+++| +...+++| .|..+.+.|..|+.++++.
T Consensus 80 ~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 80 DKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred CcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 579999999 56788999 8899999999999998764
No 159
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.15 E-value=2.1e-05 Score=67.28 Aligned_cols=88 Identities=8% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEEe--c----------------------cCCChhHHHhCC
Q 020846 80 SHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E----------------------SAIRPSILSKYG 132 (320)
Q Consensus 80 ~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~----------------------~~~~~~l~~~~~ 132 (320)
.++++++.|| +.||+.|....+.|.++.++|. +...+++. + +|.+..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 5678999999 9999999999999999999985 33333321 1 123467899999
Q ss_pred C----Ccc--CeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 020846 133 V----HGF--PTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (320)
Q Consensus 133 V----~~~--Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~~ 167 (320)
+ .++ |+.+++ +|.....+.. .++.+++.+.++...
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8 366 999999 4555544432 468888888886543
No 160
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.13 E-value=6.4e-06 Score=60.45 Aligned_cols=58 Identities=17% Similarity=0.413 Sum_probs=40.5
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|+++||++|+++.+.++++. .++ ...+.++..+... .+.+.+|+.++|++++ +|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i-~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI-NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE-CCE
Confidence 47899999999999999999987 222 3344443222222 3667789999999843 664
No 161
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.12 E-value=3.2e-07 Score=80.49 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=55.6
Q ss_pred CCCCCCCCChhhhccCC-----CcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHH
Q 020846 170 NTASLDKISPDKVGKAS-----NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRL 228 (320)
Q Consensus 170 ~~~~l~~~~~~~~~~~~-----~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~ 228 (320)
.+..+++++|++++... ..+++.|++ |||++|+.+ .|.|+++|..+. +.+|
T Consensus 31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA------pWC~~Ck~~--~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~ 102 (224)
T PTZ00443 31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYA------PWCSHCRKM--APAWERLAKALKGQVNVADLDATRALNLAKRF 102 (224)
T ss_pred CcEECCHHHHHHHHhhhcccCCCCEEEEEEC------CCChHHHHH--HHHHHHHHHHcCCCeEEEEecCcccHHHHHHc
Confidence 35567888999887643 337888885 999999999 999999999884 3899
Q ss_pred HhhhchhHhhhhchhh
Q 020846 229 VYIFLPTLLIFAQFTW 244 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~~ 244 (320)
+|.+|||+.+|.+|..
T Consensus 103 ~I~~~PTl~~f~~G~~ 118 (224)
T PTZ00443 103 AIKGYPTLLLFDKGKM 118 (224)
T ss_pred CCCcCCEEEEEECCEE
Confidence 9999999999998863
No 162
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.11 E-value=7.5e-07 Score=70.02 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=53.4
Q ss_pred CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH---------------------HHHH
Q 020846 171 TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------------LLRL 228 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~---------------------~~~~ 228 (320)
+..++..+|+..+.+... +++.|++ |||++|+.+ .|.|+.++..|. +.++
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a------~wC~~C~~~--~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~ 74 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYA------SWCGHCRAF--APTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDF 74 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEEC------CCCHHHHHH--hHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhC
Confidence 345677789888776654 8888875 999999999 999999999763 2578
Q ss_pred HhhhchhHhhhhchh
Q 020846 229 VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~ 243 (320)
+|.+|||+.+|.+|.
T Consensus 75 ~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 75 GVTGYPTLRYFPPFS 89 (114)
T ss_pred CCCCCCEEEEECCCC
Confidence 999999999998886
No 163
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.09 E-value=3.2e-05 Score=68.72 Aligned_cols=88 Identities=20% Similarity=0.337 Sum_probs=66.2
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEecc--------CCChhHHHhCCCCccCeEEEE--e-Ccee
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEES--------AIRPSILSKYGVHGFPTLFLL--N-SSMR 147 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~--------~~~~~l~~~~~V~~~Pti~l~--~-g~~~ 147 (320)
.++.-|++||.+-|++|+++.|++..++++|.= +..|.+|.. -.+...++++||..+|+++++ + ++..
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVR 221 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEE
Confidence 356899999999999999999999999999942 233333221 123446789999999999999 3 3444
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 020846 148 VRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 148 ~~~~G~~~~~~l~~~i~~~~ 167 (320)
..-.|..+.++|.+-|....
T Consensus 222 pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 222 PLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEeeccCCHHHHHHHHHHHH
Confidence 45668899999988877654
No 164
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.09 E-value=3.6e-07 Score=71.42 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=48.9
Q ss_pred ChhhhccC-CC-cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhhh
Q 020846 178 SPDKVGKA-SN-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIF 239 (320)
Q Consensus 178 ~~~~~~~~-~~-~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~~ 239 (320)
+++..+.. .. .+++.|++ +||++|+.| .|.++++|..|. ..+|+|.+.||+.+|
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A------~WCgpCk~m--~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGR------DWDPVCMQM--DEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHhccCCCEEEEEEEC------CCChhHHHH--HHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 45556653 23 38888885 999999999 999999998873 289999999999999
Q ss_pred hchhhh
Q 020846 240 AQFTWR 245 (320)
Q Consensus 240 ~~~~~~ 245 (320)
.+|..+
T Consensus 76 k~G~~v 81 (114)
T cd02954 76 FRNKHM 81 (114)
T ss_pred ECCEEE
Confidence 999743
No 165
>PRK15000 peroxidase; Provisional
Probab=98.06 E-value=3.5e-05 Score=66.70 Aligned_cols=87 Identities=13% Similarity=0.314 Sum_probs=64.3
Q ss_pred CCCeEEEEEEc-CCCHHHHhhHHHHHHHHHHcCC--CCeEEE--ec-------------------------cCCChhHHH
Q 020846 80 SHEYVAVLFYA-SWCPFSRNFRPSFSVLSSLYSS--IPHFAI--EE-------------------------SAIRPSILS 129 (320)
Q Consensus 80 ~~~~vlV~Fya-~wC~~Ck~~~p~~~~la~~~~~--~~~v~~--~~-------------------------~~~~~~l~~ 129 (320)
.+++++|.||+ .||+.|....+.+.++.++|.. ...+++ ++ +|.+..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 56899999999 5999999999999999999863 323322 10 223457888
Q ss_pred hCCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 020846 130 KYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 166 (320)
Q Consensus 130 ~~~V~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~ 166 (320)
.||+. .+|+.+++ +|.....+.| .++.+++.+.++..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 89987 79999999 5666555555 46788888888653
No 166
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.06 E-value=3.4e-05 Score=60.75 Aligned_cols=66 Identities=21% Similarity=0.327 Sum_probs=42.2
Q ss_pred cCCCeEEEEEEcC-------CCHHHHhhHHHHHHHHHHcCCCCe-EEEe--cc----CCChhHHH--hCCCCccCeEEEE
Q 020846 79 NSHEYVAVLFYAS-------WCPFSRNFRPSFSVLSSLYSSIPH-FAIE--ES----AIRPSILS--KYGVHGFPTLFLL 142 (320)
Q Consensus 79 ~~~~~vlV~Fya~-------wC~~Ck~~~p~~~~la~~~~~~~~-v~~~--~~----~~~~~l~~--~~~V~~~Pti~l~ 142 (320)
+++++++|.|+++ |||.|.+..|.+++.-...++... +.+. +. +.+..... +++|+++||++-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 5668999999964 999999999999998887664333 2221 11 11233444 5999999999999
Q ss_pred eC
Q 020846 143 NS 144 (320)
Q Consensus 143 ~g 144 (320)
++
T Consensus 97 ~~ 98 (119)
T PF06110_consen 97 ET 98 (119)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 167
>PHA02278 thioredoxin-like protein
Probab=98.04 E-value=7.3e-07 Score=68.75 Aligned_cols=59 Identities=8% Similarity=-0.027 Sum_probs=48.2
Q ss_pred CChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHH--------------------HHHHHHhhhchhH
Q 020846 177 ISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF--------------------VLLRLVYIFLPTL 236 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f--------------------~~~~~~i~~~Pti 236 (320)
++|++.+.....+++.|++ |||++|+.| .|.++.++..+ +..+|.|.+.||+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A------~WCgpCk~m--~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~ 76 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQ------DNCGKCEIL--KSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVL 76 (103)
T ss_pred HHHHHHHhCCCcEEEEEEC------CCCHHHHhH--HHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEE
Confidence 4566667655668899985 999999999 99999998752 1267999999999
Q ss_pred hhhhchh
Q 020846 237 LIFAQFT 243 (320)
Q Consensus 237 ~~~~~~~ 243 (320)
.+|.+|.
T Consensus 77 i~fk~G~ 83 (103)
T PHA02278 77 IGYKDGQ 83 (103)
T ss_pred EEEECCE
Confidence 9999886
No 168
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.01 E-value=0.00011 Score=62.15 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=80.3
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCe-EEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCC--c
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH--G 135 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~-vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~--~ 135 (320)
+..++.++ +.++ .+.+.+ +++.|+.........+...++.+++++++...+..+|++..+.+++.+|+. .
T Consensus 79 v~~~t~~n--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~ 151 (184)
T PF13848_consen 79 VPELTPEN--FEKL-----FSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDD 151 (184)
T ss_dssp CEEESTTH--HHHH-----HSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSS
T ss_pred ccccchhh--HHHH-----hcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCcc
Confidence 55666666 8877 345544 888888777888999999999999999998888888998889999999998 9
Q ss_pred cCeEEEEe--Cce-eEEEeCCCCHHHHHHHHHH
Q 020846 136 FPTLFLLN--SSM-RVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 136 ~Pti~l~~--g~~-~~~~~G~~~~~~l~~~i~~ 165 (320)
+|++++++ ... ...+.|..+.++|.+|+++
T Consensus 152 ~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 152 LPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99999994 222 2334788999999999974
No 169
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.00 E-value=3.1e-05 Score=57.35 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=54.0
Q ss_pred EEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC----hhHHHhCC--CCccCeEEEEeCceeEEEeCCCCHH
Q 020846 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYG--VHGFPTLFLLNSSMRVRYHGSRTLD 157 (320)
Q Consensus 84 vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~--V~~~Pti~l~~g~~~~~~~G~~~~~ 157 (320)
-++.|+.+||++|++....++++..++.++....+ |.+.+ .++.+..+ +..+|++++ +|+.+ | ..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~i-di~~~~~~~~el~~~~~~~~~~vP~ifi-~g~~i----g--g~~ 73 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYV-DIHAEGISKADLEKTVGKPVETVPQIFV-DQKHI----G--GCT 73 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEE-ECCCChHHHHHHHHHHCCCCCcCCEEEE-CCEEE----c--CHH
Confidence 36789999999999999999999987766543333 33332 24554444 589999864 66443 2 447
Q ss_pred HHHHHHHHhhC
Q 020846 158 SLVAFYSDVTG 168 (320)
Q Consensus 158 ~l~~~i~~~~~ 168 (320)
+|.++++.+++
T Consensus 74 ~~~~~~~~~~~ 84 (85)
T PRK11200 74 DFEAYVKENLG 84 (85)
T ss_pred HHHHHHHHhcc
Confidence 88888887765
No 170
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.00 E-value=8.5e-07 Score=68.02 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=41.0
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhhhhch
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQF 242 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~~~~~ 242 (320)
+++.|++ |||++|+.+ .|.+++++..|. +.+|+|.++||+.+|.+|
T Consensus 21 vlV~F~a------~WC~~C~~~--~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 21 TAVLFYA------SWCPFSASF--RPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred EEEEEEC------CCCHHHHhH--hHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 7888885 999999999 999999999873 278999999999999877
No 171
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.00 E-value=2.7e-06 Score=66.10 Aligned_cols=75 Identities=20% Similarity=0.086 Sum_probs=59.0
Q ss_pred HHHHHHHhhCCCCCCCCCCChhhhccCCCcccccccCCCcCCccc--CCCcccccChHHHHHHHHHHH------------
Q 020846 159 LVAFYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEEESCPFSW--ARSPENLLQQETYLALATAFV------------ 224 (320)
Q Consensus 159 l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~w--c~~c~~~~~~~~~~~la~~f~------------ 224 (320)
+++++....+. ..++..+|++++......++.|++ +| |.+|..+ .|.++++|..|-
T Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~f~~------~~~~cp~c~~i--~P~leela~e~~~~v~f~kVdid~ 71 (111)
T cd02965 2 LVARLQTRHGW--PRVDAATLDDWLAAGGDLVLLLAG------DPVRFPEVLDV--AVVLPELLKAFPGRFRAAVVGRAD 71 (111)
T ss_pred HhHHHHHhcCC--cccccccHHHHHhCCCCEEEEecC------CcccCcchhhh--HhHHHHHHHHCCCcEEEEEEECCC
Confidence 45566555543 356788999988554556777764 64 9999999 999999999983
Q ss_pred ----HHHHHhhhchhHhhhhchh
Q 020846 225 ----LLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 225 ----~~~~~i~~~Pti~~~~~~~ 243 (320)
..+|+|.+.||+.+|.+|.
T Consensus 72 ~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 72 EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred CHHHHHHcCCCcCCEEEEEECCE
Confidence 3899999999999999986
No 172
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.00 E-value=6.8e-07 Score=68.75 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=51.0
Q ss_pred CCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhh
Q 020846 175 DKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLI 238 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~ 238 (320)
+.++|+.++.....+++.|++ +||++|+.+ .|.++.++..|. ..+|+|..+||+.+
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a------~wC~~Ck~~--~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~ 77 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQ------EWCGPCKAV--VSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLF 77 (102)
T ss_pred CHHHHHHHHccCCeEEEEEEC------CcCHhHHHH--hHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEE
Confidence 456788887765668889985 999999999 999999998873 17999999999999
Q ss_pred hhchh
Q 020846 239 FAQFT 243 (320)
Q Consensus 239 ~~~~~ 243 (320)
|.+|.
T Consensus 78 ~~~g~ 82 (102)
T cd02948 78 YKNGE 82 (102)
T ss_pred EECCE
Confidence 98775
No 173
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.00 E-value=9.8e-07 Score=67.30 Aligned_cols=63 Identities=21% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-------------------HHHHHhhh
Q 020846 172 ASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIF 232 (320)
Q Consensus 172 ~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-------------------~~~~~i~~ 232 (320)
..++.++|+..+.+. .+++.|++ +||++|+.+ .|.+..++..+. +.+++|.+
T Consensus 3 ~~l~~~~f~~~~~~~-~~lv~f~a------~wC~~C~~~--~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 73 (102)
T cd03005 3 LELTEDNFDHHIAEG-NHFVKFFA------PWCGHCKRL--APTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG 73 (102)
T ss_pred eECCHHHHHHHhhcC-CEEEEEEC------CCCHHHHHh--CHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc
Confidence 356777888888655 37888875 999999999 999999999883 27899999
Q ss_pred chhHhhhhchh
Q 020846 233 LPTLLIFAQFT 243 (320)
Q Consensus 233 ~Pti~~~~~~~ 243 (320)
+||+.+|.+|.
T Consensus 74 ~Pt~~~~~~g~ 84 (102)
T cd03005 74 YPTLLLFKDGE 84 (102)
T ss_pred CCEEEEEeCCC
Confidence 99999998775
No 174
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.97 E-value=2.7e-07 Score=71.18 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=47.0
Q ss_pred CChhhhccCC--CcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------------HHHHHhhhchhH
Q 020846 177 ISPDKVGKAS--NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTL 236 (320)
Q Consensus 177 ~~~~~~~~~~--~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------------~~~~~i~~~Pti 236 (320)
++|++.+.+. ..+++.|++ +||++|+.+ .|.++.++..|. ..+|+|.++||+
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a------~wC~~C~~~--~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~ 75 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFAL------KHSGPSVKI--YPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHF 75 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEEC------CCCHhHHHH--hHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEE
Confidence 4566666543 338888875 999999999 999999999872 157899999999
Q ss_pred hhhhchh
Q 020846 237 LIFAQFT 243 (320)
Q Consensus 237 ~~~~~~~ 243 (320)
.+|.+|.
T Consensus 76 ~~~~~G~ 82 (103)
T cd02985 76 LFYKDGE 82 (103)
T ss_pred EEEeCCe
Confidence 9997775
No 175
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.96 E-value=6.2e-07 Score=74.02 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCCCCCChhhhccCCC--cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-----------------HHHHHhh
Q 020846 171 TASLDKISPDKVGKASN--HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYI 231 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~--~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-----------------~~~~~i~ 231 (320)
+..+++++|++.+.... .+++.|+. |||++|+.+ .|.++.++..|. +.+|+|.
T Consensus 30 v~~l~~~~f~~~l~~~~~~~vvV~Fya------~wC~~Ck~l--~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~ 101 (152)
T cd02962 30 IKYFTPKTLEEELERDKRVTWLVEFFT------TWSPECVNF--APVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS 101 (152)
T ss_pred cEEcCHHHHHHHHHhcCCCEEEEEEEC------CCCHHHHHH--HHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce
Confidence 44456777888775433 37888885 999999999 999999999873 3788998
Q ss_pred h------chhHhhhhchhh
Q 020846 232 F------LPTLLIFAQFTW 244 (320)
Q Consensus 232 ~------~Pti~~~~~~~~ 244 (320)
. +||+.+|.+|.-
T Consensus 102 ~~~~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 102 TSPLSKQLPTIILFQGGKE 120 (152)
T ss_pred ecCCcCCCCEEEEEECCEE
Confidence 8 999999998863
No 176
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.95 E-value=2.1e-06 Score=64.94 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=47.4
Q ss_pred ChhhhccCC-C-cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhhh
Q 020846 178 SPDKVGKAS-N-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIF 239 (320)
Q Consensus 178 ~~~~~~~~~-~-~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~~ 239 (320)
+|++.+.+. . .+++.|++ |||++|+.+ .|.++.++..|. +.+|+|.++||+.+|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a------~wC~~C~~~--~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 73 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWA------PRSPPSKEL--LPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLF 73 (96)
T ss_pred ChHHHHHhcCCCeEEEEEEC------CCChHHHHH--HHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEE
Confidence 567666544 3 37788875 999999999 999999998883 389999999999999
Q ss_pred hchh
Q 020846 240 AQFT 243 (320)
Q Consensus 240 ~~~~ 243 (320)
.+|.
T Consensus 74 ~~g~ 77 (96)
T cd02956 74 AAGQ 77 (96)
T ss_pred eCCE
Confidence 8775
No 177
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.94 E-value=1.9e-06 Score=65.55 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------------HHHHHhhhchh
Q 020846 174 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPT 235 (320)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------------~~~~~i~~~Pt 235 (320)
+++++|++.+.....+++.|++ +||.+|+.+ .+.++.++..|. +.+|+|.++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~------~~C~~c~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~ 72 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYA------PWCGHCKNL--APEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPT 72 (102)
T ss_pred CchhhHHHHhccCCcEEEEEEC------CCCHHHHhh--ChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCE
Confidence 3456788888755557888886 999999999 899999998874 27899999999
Q ss_pred Hhhhhchh
Q 020846 236 LLIFAQFT 243 (320)
Q Consensus 236 i~~~~~~~ 243 (320)
+.+|.+|.
T Consensus 73 ~~~~~~~~ 80 (102)
T TIGR01126 73 IKFFPKGK 80 (102)
T ss_pred EEEecCCC
Confidence 99998876
No 178
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.94 E-value=1.6e-06 Score=66.26 Aligned_cols=64 Identities=20% Similarity=0.150 Sum_probs=52.0
Q ss_pred CCCCCCChhhhccCCC-cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-----------------HHHHHhhhc
Q 020846 172 ASLDKISPDKVGKASN-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFL 233 (320)
Q Consensus 172 ~~l~~~~~~~~~~~~~-~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-----------------~~~~~i~~~ 233 (320)
..++.++|++.+.+.. .+++.|++ |||++|+.+ .|.++.++..+. +..+.+.++
T Consensus 3 ~~l~~~~f~~~i~~~~~~~~v~f~~------~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~ 74 (104)
T cd02995 3 KVVVGKNFDEVVLDSDKDVLVEFYA------PWCGHCKAL--APIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGF 74 (104)
T ss_pred EEEchhhhHHHHhCCCCcEEEEEEC------CCCHHHHHH--hhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCC
Confidence 4567788988876654 47788875 999999999 999999998863 267788899
Q ss_pred hhHhhhhchh
Q 020846 234 PTLLIFAQFT 243 (320)
Q Consensus 234 Pti~~~~~~~ 243 (320)
||+.+|.+|.
T Consensus 75 Pt~~~~~~~~ 84 (104)
T cd02995 75 PTILFFPAGD 84 (104)
T ss_pred CEEEEEcCCC
Confidence 9999998875
No 179
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.93 E-value=1.1e-06 Score=68.95 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=52.2
Q ss_pred CCCCCChhhhccCC---CcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH--------------HHHHHhhhchh
Q 020846 173 SLDKISPDKVGKAS---NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------LLRLVYIFLPT 235 (320)
Q Consensus 173 ~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~--------------~~~~~i~~~Pt 235 (320)
.++.++|.+.+.+. ..+++.|++ |||++|+.+ .|.++.+|..|. ..+++|.++||
T Consensus 8 ~i~~~~f~~~i~~~~~~~~vvv~F~a------~~c~~C~~l--~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt 79 (113)
T cd02957 8 EISSKEFLEEVTKASKGTRVVVHFYE------PGFPRCKIL--DSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPT 79 (113)
T ss_pred EEcHHHHHHHHHccCCCCEEEEEEeC------CCCCcHHHH--HHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCE
Confidence 34556777776554 347888885 999999999 999999999873 36899999999
Q ss_pred Hhhhhchhhh
Q 020846 236 LLIFAQFTWR 245 (320)
Q Consensus 236 i~~~~~~~~~ 245 (320)
+++|.+|..+
T Consensus 80 ~~~f~~G~~v 89 (113)
T cd02957 80 LLVYKNGELI 89 (113)
T ss_pred EEEEECCEEE
Confidence 9999998743
No 180
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.92 E-value=0.00012 Score=63.46 Aligned_cols=96 Identities=10% Similarity=0.228 Sum_probs=64.4
Q ss_pred chhHHHHHhHHhhcCCC-eEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEE--ec--------------------
Q 020846 66 EVSLQMALNMVHKNSHE-YVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAI--EE-------------------- 120 (320)
Q Consensus 66 ~~~f~~~~~~~~~~~~~-~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~--~~-------------------- 120 (320)
.+++.+. ..++ .+++.|+++||+.|....+.+.++.++|.+ ...+++ ++
T Consensus 16 ~~~l~d~------~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~ 89 (203)
T cd03016 16 PIKFHDY------LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIP 89 (203)
T ss_pred cEeHHHH------cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCc
Confidence 3456665 2324 456689999999999999999999999853 333333 11
Q ss_pred ----cCCChhHHHhCCCC----c----cCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 020846 121 ----SAIRPSILSKYGVH----G----FPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (320)
Q Consensus 121 ----~~~~~~l~~~~~V~----~----~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~~ 167 (320)
+|.+..+++.||+. + .|+.+++ +|+....+.+ .++.+++.+.|+...
T Consensus 90 fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 90 FPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred eeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 12235788899986 2 3457888 5555555544 567888888887653
No 181
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.90 E-value=3.4e-06 Score=64.48 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=52.1
Q ss_pred CCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-------------------HHHHHhh
Q 020846 172 ASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYI 231 (320)
Q Consensus 172 ~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-------------------~~~~~i~ 231 (320)
..++.+++++.+..... +++.|++ +||.+|+.+ .+.+..++..+. +.+++|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~v~f~a------~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~ 74 (105)
T cd02998 3 VELTDSNFDKVVGDDKKDVLVEFYA------PWCGHCKNL--APEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVS 74 (105)
T ss_pred EEcchhcHHHHhcCCCCcEEEEEEC------CCCHHHHhh--ChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCC
Confidence 34667788888776664 7778875 999999999 999999998873 2689999
Q ss_pred hchhHhhhhchh
Q 020846 232 FLPTLLIFAQFT 243 (320)
Q Consensus 232 ~~Pti~~~~~~~ 243 (320)
++||+.+|.+|.
T Consensus 75 ~~P~~~~~~~~~ 86 (105)
T cd02998 75 GFPTLKFFPKGS 86 (105)
T ss_pred CcCEEEEEeCCC
Confidence 999999998774
No 182
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.89 E-value=1.8e-05 Score=66.86 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-e-CceeEEEeCC-CCHHHHHHHHHHhhCCCCCCC
Q 020846 98 NFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGS-RTLDSLVAFYSDVTGMNTASL 174 (320)
Q Consensus 98 ~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~-g~~~~~~~G~-~~~~~l~~~i~~~~~~~~~~l 174 (320)
.....|.++|+.+.+...++... +.++++++++.. |++++| . ++....|.|. .+.++|.+||....-+.+..+
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~ 82 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL 82 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence 35668999999999777776653 578999999999 999999 3 3567999998 899999999999999999999
Q ss_pred CCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH
Q 020846 175 DKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 175 ~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
+.++++.+...... .++.|..+. ....+.+ ...+..+|..+.
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~l~~~a~~~~ 125 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKD------NESTEAF--KKELQDIAKKFK 125 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTT------HHHHHHH--HHHHHHHHHCTT
T ss_pred chhhHHHHhcCCCceEEEEEEcCC------chhHHHH--HHHHHHHHHhcC
Confidence 99999999887655 455554211 1123444 556667776664
No 183
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.89 E-value=1.6e-06 Score=68.12 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=50.6
Q ss_pred CChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH---------------HHHHHhhhchhHhhhhc
Q 020846 177 ISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFAQ 241 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~---------------~~~~~i~~~Pti~~~~~ 241 (320)
++|++.+.+...+++.|+. |||++|+.+ .|.++.|+..|. ..+|+|...||+++|.+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a------~~c~~C~~~--~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~ 84 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYH------PEFFRCKIM--DKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFKN 84 (113)
T ss_pred HHHHHHHhCCCcEEEEEEC------CCCccHHHH--HHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEEC
Confidence 5677777666668888885 999999999 999999999872 38999999999999999
Q ss_pred hh
Q 020846 242 FT 243 (320)
Q Consensus 242 ~~ 243 (320)
|.
T Consensus 85 G~ 86 (113)
T cd02989 85 GK 86 (113)
T ss_pred CE
Confidence 86
No 184
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.88 E-value=8.1e-05 Score=66.82 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=65.9
Q ss_pred hhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcC--CCCeEEE--ec---------------------
Q 020846 67 VSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYS--SIPHFAI--EE--------------------- 120 (320)
Q Consensus 67 ~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~--~~~~v~~--~~--------------------- 120 (320)
+++.++ ..++++++.|| +.||+.|....|.|.++.++|. +...+++ ++
T Consensus 90 vsLsd~------~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~ 163 (261)
T PTZ00137 90 FNSSDY------FKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLK 163 (261)
T ss_pred EeHHHH------cCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcc
Confidence 456665 24567888888 8999999999999999999985 3333322 11
Q ss_pred ----cCCChhHHHhCCCC-----ccCeEEEE--eCceeEEE----eCCCCHHHHHHHHHHh
Q 020846 121 ----SAIRPSILSKYGVH-----GFPTLFLL--NSSMRVRY----HGSRTLDSLVAFYSDV 166 (320)
Q Consensus 121 ----~~~~~~l~~~~~V~-----~~Pti~l~--~g~~~~~~----~G~~~~~~l~~~i~~~ 166 (320)
+|.+..+++.||+. ..|+.+++ +|.....+ ..+++.+++.+.|+..
T Consensus 164 fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 164 FPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred eEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 11235788999985 58999999 45555544 2356888888887644
No 185
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.85 E-value=6.1e-05 Score=62.46 Aligned_cols=86 Identities=21% Similarity=0.333 Sum_probs=49.9
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHH-HH--HHHHHHcCC-CCeEEEeccCCChhHHHhC-
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRP-SF--SVLSSLYSS-IPHFAIEESAIRPSILSKY- 131 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p-~~--~~la~~~~~-~~~v~~~~~~~~~~l~~~~- 131 (320)
.+|.-..-++..|+++ .+.+++++|.++.+||..|+.|.. .| .++++.+.. .+-|.+ |.++.+++-..|
T Consensus 18 ~~V~W~~w~~ea~~~A-----k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~Vkv-Dree~Pdid~~y~ 91 (163)
T PF03190_consen 18 NPVNWQPWGEEALEKA-----KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKV-DREERPDIDKIYM 91 (163)
T ss_dssp SSS--B-SSHHHHHHH-----HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEE-ETTT-HHHHHHHH
T ss_pred CCCCcccCCHHHHHHH-----HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEe-ccccCccHHHHHH
Confidence 3444444443346666 678899999999999999999975 33 334444432 344444 677889988887
Q ss_pred -------CCCccCeEEEE--eCceeE
Q 020846 132 -------GVHGFPTLFLL--NSSMRV 148 (320)
Q Consensus 132 -------~V~~~Pti~l~--~g~~~~ 148 (320)
|.-|+|+.++. +|++..
T Consensus 92 ~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 92 NAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp HHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred HHHHHhcCCCCCCceEEECCCCCeee
Confidence 78899999999 555543
No 186
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.84 E-value=0.00012 Score=73.12 Aligned_cols=79 Identities=14% Similarity=0.330 Sum_probs=65.3
Q ss_pred CCeE-EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 020846 81 HEYV-AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (320)
Q Consensus 81 ~~~v-lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (320)
++++ +-.|.+++|++|.+....+++++.+.+++ ...+++....++++++|+|.++|++++ |++ ..+.|..+.+++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i-~~~~i~~~~~~~~~~~~~v~~vP~~~i-~~~--~~~~G~~~~~~~ 550 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNV-EAEMIDVSHFPDLKDEYGIMSVPAIVV-DDQ--QVYFGKKTIEEM 550 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCc-eEEEEECcccHHHHHhCCceecCEEEE-CCE--EEEeeCCCHHHH
Confidence 4555 44568999999999999999999998754 466667888999999999999999987 655 346688899999
Q ss_pred HHHH
Q 020846 160 VAFY 163 (320)
Q Consensus 160 ~~~i 163 (320)
.++|
T Consensus 551 ~~~~ 554 (555)
T TIGR03143 551 LELI 554 (555)
T ss_pred HHhh
Confidence 8876
No 187
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.83 E-value=0.00011 Score=51.87 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=42.5
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHH----hCCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILS----KYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~----~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (320)
++.|+++||++|+++.+.+++. ++ .+...+.+.+....+ ..++.++|++++ +| ....| .+.+.|.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i-~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~-~~---~~i~g-~~~~~l~ 70 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GI-PFEEVDVDEDPEALEELKKLNGYRSVPVVVI-GD---EHLSG-FRPDKLR 70 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CC-CeEEEeCCCCHHHHHHHHHHcCCcccCEEEE-CC---EEEec-CCHHHHH
Confidence 5789999999999999888763 32 222334444443333 337899999976 44 23333 4556666
Q ss_pred HH
Q 020846 161 AF 162 (320)
Q Consensus 161 ~~ 162 (320)
++
T Consensus 71 ~~ 72 (73)
T cd02976 71 AL 72 (73)
T ss_pred hh
Confidence 54
No 188
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=3.6e-06 Score=81.16 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=55.7
Q ss_pred CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHH---------------------HHHHH
Q 020846 171 TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------------VLLRL 228 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f---------------------~~~~~ 228 (320)
+..++.++|...+..+.. .+++||+ .|||||.++ +|+|+.+|... +|..+
T Consensus 41 ii~Ld~~tf~~~v~~~~~~~lVEFy~------swCGhCr~F--APtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef 112 (606)
T KOG1731|consen 41 IIELDVDTFNAAVFGSRKAKLVEFYN------SWCGHCRAF--APTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREF 112 (606)
T ss_pred eEEeehhhhHHHhcccchhHHHHHHH------hhhhhhhhc--chHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhc
Confidence 334567788888777664 8999996 899999999 99999999987 36999
Q ss_pred HhhhchhHhhhhchh
Q 020846 229 VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ~i~~~Pti~~~~~~~ 243 (320)
+|.+||||++|+.+.
T Consensus 113 ~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 113 SVSGYPTLRYFPPDS 127 (606)
T ss_pred CCCCCceeeecCCcc
Confidence 999999999999875
No 189
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.0002 Score=55.86 Aligned_cols=96 Identities=13% Similarity=0.247 Sum_probs=77.4
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCce-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSM- 146 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~- 146 (320)
.+++ +....++.++|.|.-.|.|.|.+|...+.+++....+...+..+|.++-+++.+-|++...||+++| +++-
T Consensus 14 Vdqa---I~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 14 VDQA---ILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred HHHH---HhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence 4555 3455778999999999999999999999999999999999999899999999999999999999888 6543
Q ss_pred eEEE--------eCC-CCHHHHHHHHHHhh
Q 020846 147 RVRY--------HGS-RTLDSLVAFYSDVT 167 (320)
Q Consensus 147 ~~~~--------~G~-~~~~~l~~~i~~~~ 167 (320)
..++ ++. .+.+++++.++-..
T Consensus 91 kiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 91 KIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred EEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 3333 232 36677777776554
No 190
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.80 E-value=3.6e-06 Score=65.77 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=42.3
Q ss_pred CcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-----------------HHHHHhhhchhHhhhhchh
Q 020846 187 NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 187 ~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-----------------~~~~~i~~~Pti~~~~~~~ 243 (320)
..+++.|++ |||++|+.+ .|.+++++..+. +.+++|.++||+.+|.+|.
T Consensus 25 ~~vlV~F~a------~wC~~C~~~--~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~ 90 (111)
T cd02963 25 KPYLIKITS------DWCFSCIHI--EPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQ 90 (111)
T ss_pred CeEEEEEEC------CccHhHHHh--hHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCE
Confidence 348888885 999999999 999999999884 2789999999999998775
No 191
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.79 E-value=0.00033 Score=61.32 Aligned_cols=87 Identities=10% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCe-EEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEe--c------------------------cCCChhHHHh
Q 020846 80 SHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E------------------------SAIRPSILSK 130 (320)
Q Consensus 80 ~~~~-vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~------------------------~~~~~~l~~~ 130 (320)
.++. +|+.|+++||+.|....+.|.++.++|. +...+++. + +|.+..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 3455 5678999999999999999999999985 33333321 1 1234568888
Q ss_pred CCCC-------ccCeEEEE--eCceeEEEe----CCCCHHHHHHHHHHh
Q 020846 131 YGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDV 166 (320)
Q Consensus 131 ~~V~-------~~Pti~l~--~g~~~~~~~----G~~~~~~l~~~i~~~ 166 (320)
||+. ..|+++++ +|+....+. ..++.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9873 68999999 455544432 246788898888754
No 192
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.77 E-value=0.00024 Score=57.97 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~ 112 (320)
+.+++++.|+.++||+|+++.|.+.++..++++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~ 36 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD 36 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence 457899999999999999999999998777654
No 193
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.76 E-value=4.4e-06 Score=63.83 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH--------------------HHHHHhhh
Q 020846 173 SLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------------LLRLVYIF 232 (320)
Q Consensus 173 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~--------------------~~~~~i~~ 232 (320)
.+++.+|+..+.....+++.|++ +||..|+.+ .|.+..++..|. +.+++|.+
T Consensus 4 ~l~~~~~~~~~~~~~~~~v~f~a------~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~ 75 (104)
T cd02997 4 HLTDEDFRKFLKKEKHVLVMFYA------PWCGHCKKM--KPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG 75 (104)
T ss_pred EechHhHHHHHhhCCCEEEEEEC------CCCHHHHHh--CHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc
Confidence 45667888888776668888875 999999999 999999998874 16889999
Q ss_pred chhHhhhhchh
Q 020846 233 LPTLLIFAQFT 243 (320)
Q Consensus 233 ~Pti~~~~~~~ 243 (320)
+||+.+|.+|.
T Consensus 76 ~Pt~~~~~~g~ 86 (104)
T cd02997 76 FPTFKYFENGK 86 (104)
T ss_pred ccEEEEEeCCC
Confidence 99999888775
No 194
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.76 E-value=0.00013 Score=64.72 Aligned_cols=84 Identities=18% Similarity=0.304 Sum_probs=59.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEE-------------------------------------Eecc-
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFA-------------------------------------IEES- 121 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~-------------------------------------~~~~- 121 (320)
+++.+++.|.-+.||+|+++.+.++++.+.--.+..+. ...|
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 45788999999999999999999988754200000000 0011
Q ss_pred ---CCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 020846 122 ---AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 122 ---~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
+.+..+++++||+++||+++-+|+. ..|..+.++|.++|++.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv~~~G~~---~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIVLSNGTL---VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEEEcCCeE---eeCCCCHHHHHHHHHHc
Confidence 1235789999999999999547754 47889999999999864
No 195
>PRK09381 trxA thioredoxin; Provisional
Probab=97.75 E-value=5.1e-06 Score=64.38 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=52.3
Q ss_pred CCCCCCCCChhhhccC-CCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhh
Q 020846 170 NTASLDKISPDKVGKA-SNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIF 232 (320)
Q Consensus 170 ~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~ 232 (320)
.+..++.++|++.+.+ ...+++.|+. |||.+|+.+ .|.++.++..|. ..+++|..
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~------~~C~~C~~~--~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~ 75 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWA------EWCGPCKMI--APILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG 75 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEEC------CCCHHHHHH--hHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc
Confidence 3455666788865443 3448888875 999999999 999999999983 27899999
Q ss_pred chhHhhhhchh
Q 020846 233 LPTLLIFAQFT 243 (320)
Q Consensus 233 ~Pti~~~~~~~ 243 (320)
+||+.+|.+|.
T Consensus 76 ~Pt~~~~~~G~ 86 (109)
T PRK09381 76 IPTLLLFKNGE 86 (109)
T ss_pred CCEEEEEeCCe
Confidence 99999998776
No 196
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.74 E-value=6.1e-06 Score=63.49 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=46.0
Q ss_pred CCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-------------------HHHHHhhhchhH
Q 020846 176 KISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-------------------LLRLVYIFLPTL 236 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-------------------~~~~~i~~~Pti 236 (320)
+++|+.. .....+++.|+. +||++|+.+ .|.++.++..|. +.+++|.++||+
T Consensus 6 ~~~~~~~-~~~~~vlv~f~a------~wC~~C~~~--~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~ 76 (104)
T cd03000 6 DDSFKDV-RKEDIWLVDFYA------PWCGHCKKL--EPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTI 76 (104)
T ss_pred hhhhhhh-ccCCeEEEEEEC------CCCHHHHhh--ChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEE
Confidence 3567764 333457888875 999999999 999999999872 178999999999
Q ss_pred hhhhch
Q 020846 237 LIFAQF 242 (320)
Q Consensus 237 ~~~~~~ 242 (320)
.+|.+|
T Consensus 77 ~l~~~~ 82 (104)
T cd03000 77 KLLKGD 82 (104)
T ss_pred EEEcCC
Confidence 998654
No 197
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00022 Score=55.32 Aligned_cols=74 Identities=22% Similarity=0.303 Sum_probs=51.6
Q ss_pred HHHHHhHHhhcCCCeEEEEEEc--------CCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCC-------ChhHHHhCCC
Q 020846 69 LQMALNMVHKNSHEYVAVLFYA--------SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI-------RPSILSKYGV 133 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya--------~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~-------~~~l~~~~~V 133 (320)
|++..+.. .+++.++|+|++ +|||.|.+..|.+.+.-+..+....+..++..+ +..+....++
T Consensus 15 ~~~~~~~~--~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 15 FEETLKNV--ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHH--hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 55554433 345559999997 599999999999999998877644444333322 2345555666
Q ss_pred -CccCeEEEEeC
Q 020846 134 -HGFPTLFLLNS 144 (320)
Q Consensus 134 -~~~Pti~l~~g 144 (320)
.++||++=+++
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 89999998843
No 198
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.72 E-value=0.0003 Score=60.78 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=66.3
Q ss_pred CcchhHHHHHhHHhhcCCCeEEEEEEc-CCCHHHHhhHHHHHHHHHHcC--CCCeEEEe--c------------------
Q 020846 64 GDEVSLQMALNMVHKNSHEYVAVLFYA-SWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E------------------ 120 (320)
Q Consensus 64 ~~~~~f~~~~~~~~~~~~~~vlV~Fya-~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~------------------ 120 (320)
+.++++.++ .+++++|.||+ .||+.|....+.+.+++++|. +...+++. +
T Consensus 26 ~~~v~l~d~-------~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~ 98 (199)
T PTZ00253 26 FKKISLSSY-------KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLG 98 (199)
T ss_pred CcEEeHHHH-------CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCcc
Confidence 356667777 56789999995 889999999999999999987 33333331 1
Q ss_pred -------cCCChhHHHhCCCC------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHhh
Q 020846 121 -------SAIRPSILSKYGVH------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDVT 167 (320)
Q Consensus 121 -------~~~~~~l~~~~~V~------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~~ 167 (320)
+|....+++.||+. .+|+.+++ +|.....+.+ .++.+++.+.|....
T Consensus 99 ~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 99 TMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred ccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 11234688889986 47899999 4444444433 356677777765443
No 199
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.68 E-value=0.00031 Score=52.14 Aligned_cols=77 Identities=14% Similarity=0.250 Sum_probs=52.6
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCC----ChhHHHhCC--CCccCeEEEEeCceeEEEeCCCCHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI----RPSILSKYG--VHGFPTLFLLNSSMRVRYHGSRTLDS 158 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~----~~~l~~~~~--V~~~Pti~l~~g~~~~~~~G~~~~~~ 158 (320)
++.|..+|||+|++....++++..++.++....+ |.+. ...+.+..| +.++|++++ +|+. .| ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~i-di~~~~~~~~~l~~~~g~~~~tVP~ifi-~g~~----ig--G~~d 73 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYI-DIHAEGISKADLEKTVGKPVETVPQIFV-DEKH----VG--GCTD 73 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEE-ECCCCHHHHHHHHHHhCCCCCCcCeEEE-CCEE----ec--CHHH
Confidence 5789999999999999999998776655433332 2222 234656666 479999954 6533 33 3478
Q ss_pred HHHHHHHhhCC
Q 020846 159 LVAFYSDVTGM 169 (320)
Q Consensus 159 l~~~i~~~~~~ 169 (320)
|.+++++..+.
T Consensus 74 l~~~~~~~~~~ 84 (86)
T TIGR02183 74 FEQLVKENFDI 84 (86)
T ss_pred HHHHHHhcccc
Confidence 88888887654
No 200
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.67 E-value=0.00021 Score=62.52 Aligned_cols=87 Identities=9% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCCeEE-EEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEEe--c------------------------cCCChhHHHh
Q 020846 80 SHEYVA-VLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAIE--E------------------------SAIRPSILSK 130 (320)
Q Consensus 80 ~~~~vl-V~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~~--~------------------------~~~~~~l~~~ 130 (320)
.+++++ +.|+++||+.|....+.|++++++|. +...+++. + +|.+..++++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 455555 47889999999999999999999985 33333321 0 1224577888
Q ss_pred CCCC-------ccCeEEEE--eCceeEEEeC----CCCHHHHHHHHHHh
Q 020846 131 YGVH-------GFPTLFLL--NSSMRVRYHG----SRTLDSLVAFYSDV 166 (320)
Q Consensus 131 ~~V~-------~~Pti~l~--~g~~~~~~~G----~~~~~~l~~~i~~~ 166 (320)
||+. ..|+.+++ +|.....+.+ +++.+++...|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8874 47888999 4555444332 46889999888764
No 201
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.66 E-value=6.4e-06 Score=61.92 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------------HHHHHhhhchh
Q 020846 174 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPT 235 (320)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------------~~~~~i~~~Pt 235 (320)
++.++|.+.+.+...+++.|+. +||++|+.+ .+.+..++..+. +.+++|.++||
T Consensus 3 l~~~~~~~~i~~~~~~~v~f~~------~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02961 3 LTDDNFDELVKDSKDVLVEFYA------PWCGHCKAL--APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPT 74 (101)
T ss_pred ccHHHHHHHHhCCCcEEEEEEC------CCCHHHHhh--hHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCE
Confidence 4566788888877778888875 999999999 999999998882 28899999999
Q ss_pred Hhhhhchh
Q 020846 236 LLIFAQFT 243 (320)
Q Consensus 236 i~~~~~~~ 243 (320)
+.+|.++.
T Consensus 75 ~~~~~~~~ 82 (101)
T cd02961 75 IKLFPNGS 82 (101)
T ss_pred EEEEcCCC
Confidence 99998773
No 202
>PRK10996 thioredoxin 2; Provisional
Probab=97.66 E-value=5.8e-06 Score=67.34 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHh
Q 020846 174 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLL 237 (320)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~ 237 (320)
++.++|+.++.+.+.+++.|+. +||++|+.+ .+.+..++..+. ..+|+|.++||+.
T Consensus 40 ~~~~~~~~~i~~~k~vvv~F~a------~wC~~C~~~--~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 40 ATGETLDKLLQDDLPVVIDFWA------PWCGPCRNF--APIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred cCHHHHHHHHhCCCeEEEEEEC------CCCHHHHHH--HHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 4556677776665568888875 999999999 999999998873 2899999999999
Q ss_pred hhhchh
Q 020846 238 IFAQFT 243 (320)
Q Consensus 238 ~~~~~~ 243 (320)
+|.+|.
T Consensus 112 i~~~G~ 117 (139)
T PRK10996 112 IFKNGQ 117 (139)
T ss_pred EEECCE
Confidence 998775
No 203
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.66 E-value=0.00039 Score=68.96 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=70.5
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (320)
+..-+-.|+++.||+|......+++++...+.+. ...+|...+++++++|+|.++|++++ +++ ..+.|..+.+++.
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~~ 191 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNPNIT-HTMIDGALFQDEVEARNIMAVPTVFL-NGE--EFGQGRMTLEEIL 191 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCce-EEEEEchhCHhHHHhcCCcccCEEEE-CCc--EEEecCCCHHHHH
Confidence 3445888999999999999999999999887544 55668889999999999999999965 654 4477999999999
Q ss_pred HHHHHhhC
Q 020846 161 AFYSDVTG 168 (320)
Q Consensus 161 ~~i~~~~~ 168 (320)
+.+.+..+
T Consensus 192 ~~~~~~~~ 199 (517)
T PRK15317 192 AKLDTGAA 199 (517)
T ss_pred HHHhcccc
Confidence 99887654
No 204
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.65 E-value=0.00017 Score=60.65 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=65.0
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCceeEEEeC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSSMRVRYHG 152 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~~~~~~~G 152 (320)
....-|++.||-|.-..|+-|...++.||+.+-+..++.+ +.+..|-++.+.+|+-+|++.+| +|....++.|
T Consensus 82 ~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikv-nae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 82 KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKV-NAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVG 155 (211)
T ss_pred hcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEE-ecccCceeeeeeeeeEeeeEEEEEcCEEEEEEee
Confidence 3556799999999999999999999999999998877776 67778899999999999999999 8888887776
No 205
>PRK13189 peroxiredoxin; Provisional
Probab=97.61 E-value=0.00085 Score=59.03 Aligned_cols=88 Identities=14% Similarity=0.237 Sum_probs=60.4
Q ss_pred CCCe-EEEEEEcCCCHHHHhhHHHHHHHHHHcC--CCCeEEE--ec------------------------cCCChhHHHh
Q 020846 80 SHEY-VAVLFYASWCPFSRNFRPSFSVLSSLYS--SIPHFAI--EE------------------------SAIRPSILSK 130 (320)
Q Consensus 80 ~~~~-vlV~Fya~wC~~Ck~~~p~~~~la~~~~--~~~~v~~--~~------------------------~~~~~~l~~~ 130 (320)
.+++ +|+.|+++||+.|....+.|.+++++|. +...+++ ++ +|.+..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4554 4557789999999999999999999985 3333332 11 1233568888
Q ss_pred CCCC-------ccCeEEEE--eCceeEEEe----CCCCHHHHHHHHHHhh
Q 020846 131 YGVH-------GFPTLFLL--NSSMRVRYH----GSRTLDSLVAFYSDVT 167 (320)
Q Consensus 131 ~~V~-------~~Pti~l~--~g~~~~~~~----G~~~~~~l~~~i~~~~ 167 (320)
||+. .+|+.+++ +|....... .+++.+++...|+...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 9975 47889999 455443333 4577888888887653
No 206
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.60 E-value=7.6e-06 Score=61.82 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=48.0
Q ss_pred CChhhhccCC--CcccccccCCCcCCcccCCCcccccChHHHHHHHHHH----------------HHHHHHhhhchhHhh
Q 020846 177 ISPDKVGKAS--NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------------VLLRLVYIFLPTLLI 238 (320)
Q Consensus 177 ~~~~~~~~~~--~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f----------------~~~~~~i~~~Pti~~ 238 (320)
+++++.+... ..+++.|+. +||++|+.+ .+.++.++..+ .+.+|+|.++||+.+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~------~~C~~C~~~--~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 74 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWA------PWAEPCKQM--NQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVF 74 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEEC------CCCHHHHHH--hHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEE
Confidence 4566676665 447788875 999999999 99999999884 238899999999999
Q ss_pred hhchh
Q 020846 239 FAQFT 243 (320)
Q Consensus 239 ~~~~~ 243 (320)
|.+|.
T Consensus 75 ~~~g~ 79 (97)
T cd02984 75 FRNGT 79 (97)
T ss_pred EECCE
Confidence 98775
No 207
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=9.8e-06 Score=70.58 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCChhhhccCCC--cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH---------------HHHHhhhchhHhh
Q 020846 176 KISPDKVGKASN--HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL---------------LRLVYIFLPTLLI 238 (320)
Q Consensus 176 ~~~~~~~~~~~~--~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~---------------~~~~i~~~Pti~~ 238 (320)
+.+|+.-+.... .++++|++ .|||+|+.+ +|+++.||+.|.. ..++|..-||.++
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta------~wCGPCk~I--aP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTA------SWCGPCKRI--APIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEe------cccchHHhh--hhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 556665554433 38899986 999999999 9999999999943 6788889999999
Q ss_pred hhchhhhhhhhhccccccccchhhHh
Q 020846 239 FAQFTWRRLIRNLKLGSLLEHPRTYL 264 (320)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~y~ 264 (320)
|.+|..+..+.--....|.++..+|.
T Consensus 81 f~ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 81 FRNGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred EecCeEeeeecCCCHHHHHHHHHHHh
Confidence 99997443333222222333444444
No 208
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.58 E-value=0.00069 Score=52.89 Aligned_cols=100 Identities=10% Similarity=0.037 Sum_probs=73.9
Q ss_pred EEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHH---cCCCCeEEEeccCCChhHHHhCCCCc-
Q 020846 60 GVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSL---YSSIPHFAIEESAIRPSILSKYGVHG- 135 (320)
Q Consensus 60 ~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~---~~~~~~v~~~~~~~~~~l~~~~~V~~- 135 (320)
+.++.++ .+.. ...+.+..+.|+.+ ..-....+.+.++|++ +++.+.+..+|.+......+.+|++.
T Consensus 2 ~e~t~e~--~~~~-----~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~ 72 (111)
T cd03072 2 REITFEN--AEEL-----TEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPA 72 (111)
T ss_pred ccccccc--HHHH-----hcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHh
Confidence 3445555 5555 34556666667722 2347789999999999 99988888888887777999999997
Q ss_pred -cCeEEEEeCce--eEE-EeCCCCHHHHHHHHHHhhC
Q 020846 136 -FPTLFLLNSSM--RVR-YHGSRTLDSLVAFYSDVTG 168 (320)
Q Consensus 136 -~Pti~l~~g~~--~~~-~~G~~~~~~l~~~i~~~~~ 168 (320)
+|.+.+.+... ... +.+..+.+.|.+|+++...
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred HCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99999993222 333 5578899999999998864
No 209
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00096 Score=60.21 Aligned_cols=113 Identities=15% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEc----CCCHHHHhhHHHHHHHHHHcCC--------CCeEEEeccCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYA----SWCPFSRNFRPSFSVLSSLYSS--------IPHFAIEESAI 123 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya----~wC~~Ck~~~p~~~~la~~~~~--------~~~v~~~~~~~ 123 (320)
+..|..++++. |.+.... .-.+-.++|.|.| ..|.-|+....+|..+++.+.. ..++..+|.++
T Consensus 39 ~~~VI~~n~d~--~~~~v~~--~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e 114 (331)
T KOG2603|consen 39 ESGVIRMNDDK--FSKFVRP--PPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE 114 (331)
T ss_pred CCCeEEecCcc--hhhhccC--CCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc
Confidence 45566777777 7777221 1123346777877 4699999999999999987641 45788889999
Q ss_pred ChhHHHhCCCCccCeEEEE---eC--ceeEEEeC---CCCHHHHHHHHHHhhCCCCC
Q 020846 124 RPSILSKYGVHGFPTLFLL---NS--SMRVRYHG---SRTLDSLVAFYSDVTGMNTA 172 (320)
Q Consensus 124 ~~~l~~~~~V~~~Pti~l~---~g--~~~~~~~G---~~~~~~l~~~i~~~~~~~~~ 172 (320)
.+++.++++++..|++++| .| +....+.+ +..+|++.+|+++.+...+.
T Consensus 115 ~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 115 SPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred cHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 9999999999999999999 12 22222222 34699999999999987765
No 210
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.56 E-value=0.00063 Score=54.67 Aligned_cols=94 Identities=12% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCeEEEEEEcC--CCH-HH-HhhHHHHHHHHHHcCCC-CeEEEeccCCChhHHHhCCCC--ccCeEEEEeCce-eEE-Ee
Q 020846 81 HEYVAVLFYAS--WCP-FS-RNFRPSFSVLSSLYSSI-PHFAIEESAIRPSILSKYGVH--GFPTLFLLNSSM-RVR-YH 151 (320)
Q Consensus 81 ~~~vlV~Fya~--wC~-~C-k~~~p~~~~la~~~~~~-~~v~~~~~~~~~~l~~~~~V~--~~Pti~l~~g~~-~~~-~~ 151 (320)
++.-+|-|.-. -|. .+ ..+...+.++|+.|++. ..+...|.+....+.+.|||. ++|++++++... .+. +.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~ 99 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLK 99 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCcccccc
Confidence 45555555422 122 22 46688999999999998 788888888888899999995 499999993322 443 67
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCC
Q 020846 152 GSRTLDSLVAFYSDVTGMNTASL 174 (320)
Q Consensus 152 G~~~~~~l~~~i~~~~~~~~~~l 174 (320)
|..+.++|.+|+++.+..+...+
T Consensus 100 ~~~t~e~i~~Fv~~~l~Gkl~~~ 122 (130)
T cd02983 100 GSFSEDGINEFLRELSYGRGPTL 122 (130)
T ss_pred CccCHHHHHHHHHHHHcCCcccc
Confidence 89999999999999997765443
No 211
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.55 E-value=4.2e-05 Score=68.49 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH---------------------HHHHhhhc
Q 020846 175 DKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL---------------------LRLVYIFL 233 (320)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~---------------------~~~~i~~~ 233 (320)
+.+|++.++.....+++.||+ -||+-.+.+ .|++++.|..|.. .||.|..|
T Consensus 2 t~~N~~~il~s~elvfv~FyA------dWCrFSq~L--~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 2 TSENIDSILDSNELVFVNFYA------DWCRFSQML--KPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKY 73 (375)
T ss_pred ccccHHHhhccceEEeeeeeh------hhchHHHHH--hHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccC
Confidence 456888888887779999996 899999999 9999999999953 99999999
Q ss_pred hhHhhhhchh
Q 020846 234 PTLLIFAQFT 243 (320)
Q Consensus 234 Pti~~~~~~~ 243 (320)
||+++|.+|.
T Consensus 74 PTlKvfrnG~ 83 (375)
T KOG0912|consen 74 PTLKVFRNGE 83 (375)
T ss_pred ceeeeeeccc
Confidence 9999999997
No 212
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.54 E-value=0.0013 Score=54.29 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=60.6
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHc--CCCCeEEEeccCCC---------------------------------
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLY--SSIPHFAIEESAIR--------------------------------- 124 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~--~~~~~v~~~~~~~~--------------------------------- 124 (320)
+.+++|+.|+..-||+|+++.+.+.++.+++ ++.+.+........
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999998 55443332211000
Q ss_pred -----------------------------------hhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 020846 125 -----------------------------------PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 125 -----------------------------------~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
...+.++||.++||+++ ||+. +.|..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i-nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI-NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE-TTCE---EETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE-CCEE---eCCCCCHHHHHHHHcC
Confidence 14567789999999988 7766 4788999999999875
No 213
>PTZ00051 thioredoxin; Provisional
Probab=97.50 E-value=9.3e-06 Score=61.49 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=49.3
Q ss_pred CCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH---------------HHHHHhhhchhHhhhh
Q 020846 176 KISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFA 240 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~---------------~~~~~i~~~Pti~~~~ 240 (320)
.++++.++.....+++.|+. +||++|+.+ .+.++.++..+. ..+|+|.++||+.+|.
T Consensus 8 ~~~~~~~~~~~~~vli~f~~------~~C~~C~~~--~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYA------EWCGPCKRI--APFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred HHHHHHHHhcCCeEEEEEEC------CCCHHHHHH--hHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 45666777665667888875 999999999 999999999874 2889999999999998
Q ss_pred chh
Q 020846 241 QFT 243 (320)
Q Consensus 241 ~~~ 243 (320)
+|.
T Consensus 80 ~g~ 82 (98)
T PTZ00051 80 NGS 82 (98)
T ss_pred CCe
Confidence 775
No 214
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.50 E-value=0.00096 Score=50.25 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-e-CceeEEEeCCCC
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRYHGSRT 155 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~-g~~~~~~~G~~~ 155 (320)
...+++++|-|+.++|+ .....|.++|+.+.+...++... +..+..++++.. |++++| . ......|.|..+
T Consensus 14 ~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~y~g~~~ 86 (97)
T cd02981 14 LDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVEYDGEFT 86 (97)
T ss_pred hccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCccCCCCCC
Confidence 46788999999999987 57788999999997655665543 467888888764 999999 3 356678999999
Q ss_pred HHHHHHHHHH
Q 020846 156 LDSLVAFYSD 165 (320)
Q Consensus 156 ~~~l~~~i~~ 165 (320)
.++|.+||..
T Consensus 87 ~~~l~~fi~~ 96 (97)
T cd02981 87 EESLVEFIKD 96 (97)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 215
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.46 E-value=0.00057 Score=52.69 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=67.8
Q ss_pred CccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCH---HHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCC
Q 020846 57 DIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCP---FSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGV 133 (320)
Q Consensus 57 ~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~---~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V 133 (320)
+....++.++ ++.. ....... |.|++.-|. .+....=++-+|.+.|++....+++..+....+..+||+
T Consensus 9 ~g~~~vd~~~--ld~~-----l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv 80 (107)
T PF07449_consen 9 HGWPRVDADT--LDAF-----LAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV 80 (107)
T ss_dssp -TEEEE-CCC--HHHH-----HHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-
T ss_pred cCCeeechhh--HHHH-----HhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC
Confidence 4456677777 8877 2344444 455555444 444445578888999999888888777778999999999
Q ss_pred CccCeEEEE-eCceeEEEeCCCCHHH
Q 020846 134 HGFPTLFLL-NSSMRVRYHGSRTLDS 158 (320)
Q Consensus 134 ~~~Pti~l~-~g~~~~~~~G~~~~~~ 158 (320)
..+|+++++ +|+......|.++.++
T Consensus 81 ~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 81 RRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred ccCCeEEEEECCEEEEEecCeecccc
Confidence 999999999 7888888888888765
No 216
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.45 E-value=0.00066 Score=58.48 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCe--E----------------------------------------E
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPH--F----------------------------------------A 117 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~--v----------------------------------------~ 117 (320)
+.+..++.|..+.||+|+++.+.+.+....+. +.. + .
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~-v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVT-VRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceE-EEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 45789999999999999999998876111100 000 0 0
Q ss_pred EeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 118 IEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 118 ~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
..+.+.+..+++++||+++||+++-+|.. ..|..+.++|.++|
T Consensus 155 ~~~i~~~~~l~~~~gi~gtPtii~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLGVNGTPTIVLADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcCCCcccEEEECCCeE---ecCCCCHHHHHhhC
Confidence 00111234789999999999998336654 57888888887764
No 217
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.42 E-value=0.00031 Score=51.17 Aligned_cols=58 Identities=16% Similarity=0.363 Sum_probs=39.4
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC----hhHHHhCCCCccCeEEEEeCce
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSM 146 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~V~~~Pti~l~~g~~ 146 (320)
++.|+++|||+|+.+.+.++++...| ..+.++..+.. ..+.+..|+.++|+++ ++|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~-~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHEDGSEIQDYLQELTGQRTVPNVF-IGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCChHHHHHHHHHHhCCCCCCeEE-ECCEE
Confidence 57899999999999999999986644 33333222121 2355667899999973 36543
No 218
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.2e-05 Score=59.21 Aligned_cols=48 Identities=10% Similarity=0.168 Sum_probs=42.4
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH---------------HHHHHhhhchhHhhhhchh
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~---------------~~~~~i~~~Pti~~~~~~~ 243 (320)
..++.||+ +|||+|+.+ .|.++.||..|- +..++|..-||+.++.+|.
T Consensus 23 liVvdF~a------~wCgPCk~i--~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 23 LVVVDFYA------TWCGPCKAI--APKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE 85 (106)
T ss_pred eEEEEEEC------CCCcchhhh--hhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE
Confidence 36788885 999999999 999999999994 4899999999999997775
No 219
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.40 E-value=0.00025 Score=51.71 Aligned_cols=73 Identities=19% Similarity=0.356 Sum_probs=45.1
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (320)
++.-++.|..+||++|++....+++..-.| ..+.++..+....+....|...+|++++ +|+. .|+ .++|.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y---~~idi~~~~~~~~~~~~~g~~~vP~i~i-~g~~----igG--~~~l~ 75 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDF---EEIPLGNDARGRSLRAVTGATTVPQVFI-GGKL----IGG--SDELE 75 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCc---EEEECCCChHHHHHHHHHCCCCcCeEEE-CCEE----EcC--HHHHH
Confidence 344577899999999999999997542222 1222221112245656678999999964 6643 222 25666
Q ss_pred HHH
Q 020846 161 AFY 163 (320)
Q Consensus 161 ~~i 163 (320)
++|
T Consensus 76 ~~l 78 (79)
T TIGR02190 76 AYL 78 (79)
T ss_pred HHh
Confidence 654
No 220
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.37 E-value=3.8e-05 Score=58.96 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=43.2
Q ss_pred CChhhhccCCCcccccccCCCcCCcccCCCcccccChHHH---HHHHHHHH--------------------HHHHHhhhc
Q 020846 177 ISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETY---LALATAFV--------------------LLRLVYIFL 233 (320)
Q Consensus 177 ~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~---~~la~~f~--------------------~~~~~i~~~ 233 (320)
++|++.+.+...+++.|+. +||++|+.+ .+.+ ..++..+. ..+++|.++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a------~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~ 73 (104)
T cd02953 2 AALAQALAQGKPVFVDFTA------DWCVTCKVN--EKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP 73 (104)
T ss_pred HHHHHHHHcCCeEEEEEEc------chhHHHHHH--HHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC
Confidence 3566667666668888875 999999999 7666 35555543 167899999
Q ss_pred hhHhhhhc
Q 020846 234 PTLLIFAQ 241 (320)
Q Consensus 234 Pti~~~~~ 241 (320)
||+.+|.+
T Consensus 74 Pti~~~~~ 81 (104)
T cd02953 74 PTYLFYGP 81 (104)
T ss_pred CEEEEECC
Confidence 99999985
No 221
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.35 E-value=4.4e-05 Score=62.39 Aligned_cols=60 Identities=8% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------------HHHHHhhhchhHh
Q 020846 176 KISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------------LLRLVYIFLPTLL 237 (320)
Q Consensus 176 ~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------------~~~~~i~~~Pti~ 237 (320)
..+++..+.....+++.|++ +||++|+.+ .|.+.+++..|. ..+|+|.++||+.
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A------~WC~~C~~~--~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v 81 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYA------DWCTVCQEM--APDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFV 81 (142)
T ss_pred cCCHHHHHhCCCEEEEEEEC------CcCHHHHHh--HHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEE
Confidence 34666666666668888875 999999999 999999998873 2788999999999
Q ss_pred hhh-chh
Q 020846 238 IFA-QFT 243 (320)
Q Consensus 238 ~~~-~~~ 243 (320)
+|. +|.
T Consensus 82 ~~~~~G~ 88 (142)
T cd02950 82 FLDREGN 88 (142)
T ss_pred EECCCCC
Confidence 985 454
No 222
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.35 E-value=2.8e-05 Score=65.88 Aligned_cols=64 Identities=17% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCCCC-CChhhhccCCC---cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH--------------HHHHHhhhc
Q 020846 172 ASLDK-ISPDKVGKASN---HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV--------------LLRLVYIFL 233 (320)
Q Consensus 172 ~~l~~-~~~~~~~~~~~---~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~--------------~~~~~i~~~ 233 (320)
..++. ++|.+.+.... .+++.||+ |||++|+.| .|.++.||..|- ..+|.|...
T Consensus 65 ~ei~~~~~f~~~v~~~~~~~~VVV~Fya------~wc~~Ck~m--~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~~v 136 (175)
T cd02987 65 YELDSGEQFLDAIDKEGKDTTVVVHIYE------PGIPGCAAL--NSSLLCLAAEYPAVKFCKIRASATGASDEFDTDAL 136 (175)
T ss_pred EEcCCHHHHHHHHHhcCCCcEEEEEEEC------CCCchHHHH--HHHHHHHHHHCCCeEEEEEeccchhhHHhCCCCCC
Confidence 44555 67777765433 37788875 999999999 999999999872 378999999
Q ss_pred hhHhhhhchh
Q 020846 234 PTLLIFAQFT 243 (320)
Q Consensus 234 Pti~~~~~~~ 243 (320)
||+++|.+|.
T Consensus 137 PTlllyk~G~ 146 (175)
T cd02987 137 PALLVYKGGE 146 (175)
T ss_pred CEEEEEECCE
Confidence 9999999986
No 223
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.34 E-value=0.0019 Score=50.45 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=58.2
Q ss_pred HHHHhhHHHHHHHHHHcC-CCCeEEEeccCCChhHHHhCCCCc----cCeEEEEe-CceeEEEeCCC-CHHHHHHHHHHh
Q 020846 94 PFSRNFRPSFSVLSSLYS-SIPHFAIEESAIRPSILSKYGVHG----FPTLFLLN-SSMRVRYHGSR-TLDSLVAFYSDV 166 (320)
Q Consensus 94 ~~Ck~~~p~~~~la~~~~-~~~~v~~~~~~~~~~l~~~~~V~~----~Pti~l~~-g~~~~~~~G~~-~~~~l~~~i~~~ 166 (320)
..-..+...+.++|+.|+ +.+.+..+|.++.....+.||++. +|++.+++ ........+.. +.++|.+|+++.
T Consensus 31 ~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 31 KGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred hHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 445678999999999999 688888888877777889999984 99999994 22333346677 999999999875
No 224
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.34 E-value=2.8e-05 Score=60.55 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=46.2
Q ss_pred ChhhhccCC--CcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhhh
Q 020846 178 SPDKVGKAS--NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIF 239 (320)
Q Consensus 178 ~~~~~~~~~--~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~~ 239 (320)
++++.+.+. ..+++.|++ .||++|+.| .|.++++|..|. ..+|.|..-||..+|
T Consensus 4 ~~d~~i~~~~~klVVVdF~a------~WC~pCk~m--dp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvff 75 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGR------DEDAVCLQL--DDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFF 75 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeC------CCChhHHHH--HHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEE
Confidence 455554432 338888885 999999999 999999998874 288999999999988
Q ss_pred hchh
Q 020846 240 AQFT 243 (320)
Q Consensus 240 ~~~~ 243 (320)
.+|.
T Consensus 76 kngk 79 (114)
T cd02986 76 FNGQ 79 (114)
T ss_pred ECCc
Confidence 8876
No 225
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.33 E-value=0.0019 Score=64.03 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=69.9
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHH
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~ 160 (320)
+..-+-.|+++.||+|......+++++...+++. ...+|...+++++++|+|.++|++++ |++ ..+.|..+.+++.
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~-~~~id~~~~~~~~~~~~v~~VP~~~i-~~~--~~~~g~~~~~~~~ 192 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNPNIS-HTMIDGALFQDEVEALGIQGVPAVFL-NGE--EFHNGRMDLAELL 192 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCce-EEEEEchhCHHHHHhcCCcccCEEEE-CCc--EEEecCCCHHHHH
Confidence 4455888999999999999999999999988654 55578889999999999999999976 654 3477889999888
Q ss_pred HHHHHhhC
Q 020846 161 AFYSDVTG 168 (320)
Q Consensus 161 ~~i~~~~~ 168 (320)
+.+.+..+
T Consensus 193 ~~l~~~~~ 200 (515)
T TIGR03140 193 EKLEETAG 200 (515)
T ss_pred HHHhhccC
Confidence 88876633
No 226
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.28 E-value=4e-05 Score=65.83 Aligned_cols=67 Identities=15% Similarity=0.009 Sum_probs=51.2
Q ss_pred CCCCCCCChhhhccC-CC--cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH------------HHHHHhhhchh
Q 020846 171 TASLDKISPDKVGKA-SN--HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------LLRLVYIFLPT 235 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~-~~--~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------~~~~~i~~~Pt 235 (320)
+..++.++|...+.. +. .+++.||. +||++|+.| .+.+..||..|. ..+|.|...||
T Consensus 84 v~eis~~~f~~eV~~as~~~~VVV~Fya------~wc~~C~~m--~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPT 155 (192)
T cd02988 84 VYEISKPDYVREVTEASKDTWVVVHLYK------DGIPLCRLL--NQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPT 155 (192)
T ss_pred EEEeCHHHHHHHHHhcCCCCEEEEEEEC------CCCchHHHH--HHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCE
Confidence 444555566644432 22 37788875 999999999 999999999883 27899999999
Q ss_pred Hhhhhchhhh
Q 020846 236 LLIFAQFTWR 245 (320)
Q Consensus 236 i~~~~~~~~~ 245 (320)
+.+|.+|.-+
T Consensus 156 lliyk~G~~v 165 (192)
T cd02988 156 ILVYRNGDIV 165 (192)
T ss_pred EEEEECCEEE
Confidence 9999998743
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=4.6e-05 Score=68.43 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCCCCCChhhhcc-CCCc--ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH----------------HHHHhh
Q 020846 171 TASLDKISPDKVGK-ASNH--EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYI 231 (320)
Q Consensus 171 ~~~l~~~~~~~~~~-~~~~--~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~----------------~~~~i~ 231 (320)
+..+|..||++.+. .+.. +++.| |+ |||++|+.+ .|..+.++..|.+ .+|+|.
T Consensus 25 I~dvT~anfe~~V~~~S~~~PVlV~f----Wa--p~~~~c~qL--~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiq 96 (304)
T COG3118 25 IKDVTEANFEQEVIQSSREVPVLVDF----WA--PWCGPCKQL--TPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQ 96 (304)
T ss_pred ceechHhHHHHHHHHHccCCCeEEEe----cC--CCCchHHHH--HHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcC
Confidence 55567889987754 3333 77777 46 999999999 9999999999954 899999
Q ss_pred hchhHhhhhchh
Q 020846 232 FLPTLLIFAQFT 243 (320)
Q Consensus 232 ~~Pti~~~~~~~ 243 (320)
+-||+..|..|-
T Consensus 97 sIPtV~af~dGq 108 (304)
T COG3118 97 SIPTVYAFKDGQ 108 (304)
T ss_pred cCCeEEEeeCCc
Confidence 999999999886
No 228
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.25 E-value=5e-05 Score=57.32 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=48.1
Q ss_pred CCCChhhhccCCC-cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHh
Q 020846 175 DKISPDKVGKASN-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLL 237 (320)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~ 237 (320)
+.+++++.+.... .+++.|+. +||++|+.+ .+.+..++..+. ..+|+|..+||+.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~------~~C~~C~~~--~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~ 73 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWA------PWCGPCKMI--APILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLL 73 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEEC------CCCHHHHHh--CHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 3456777666544 47777764 999999999 899999998874 2789999999999
Q ss_pred hhhchh
Q 020846 238 IFAQFT 243 (320)
Q Consensus 238 ~~~~~~ 243 (320)
+|..|.
T Consensus 74 ~~~~g~ 79 (101)
T TIGR01068 74 LFKNGK 79 (101)
T ss_pred EEeCCc
Confidence 997765
No 229
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.23 E-value=3.8e-05 Score=62.43 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=46.0
Q ss_pred CCChhhhccCC-C-cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHh
Q 020846 176 KISPDKVGKAS-N-HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLL 237 (320)
Q Consensus 176 ~~~~~~~~~~~-~-~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~ 237 (320)
.+++++.+... + .++++|++ .||++|+.| .|.++++|..+. ..+|.|.+-||+.
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A------~WCgpCk~m--~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~ 82 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGH------DWDETCMQM--DEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVM 82 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEEC------CCChhHHHH--HHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEE
Confidence 45677666433 2 38889985 999999999 999999998873 2899999787776
Q ss_pred -hhhchh
Q 020846 238 -IFAQFT 243 (320)
Q Consensus 238 -~~~~~~ 243 (320)
+|.+|.
T Consensus 83 ~ffk~g~ 89 (142)
T PLN00410 83 FFFRNKH 89 (142)
T ss_pred EEEECCe
Confidence 666654
No 230
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.19 E-value=0.0062 Score=48.30 Aligned_cols=94 Identities=10% Similarity=0.213 Sum_probs=70.7
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCe-EEEE-eCce
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPT-LFLL-NSSM 146 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pt-i~l~-~g~~ 146 (320)
.|++ +....++.+++.|.-+|-+.|.++...+.+++.+.++...+..+|.++-+++.+-|.+. -|. +++| +++.
T Consensus 11 VDqA---I~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkh 86 (133)
T PF02966_consen 11 VDQA---ILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKH 86 (133)
T ss_dssp HHHH---HHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEE
T ss_pred HHHH---HhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeE
Confidence 6666 45567899999999999999999999999999999999999999999999999999999 676 4444 6654
Q ss_pred e-EEE--------eCC-CCHHHHHHHHHHh
Q 020846 147 R-VRY--------HGS-RTLDSLVAFYSDV 166 (320)
Q Consensus 147 ~-~~~--------~G~-~~~~~l~~~i~~~ 166 (320)
+ .++ ++. .+.+++++.++-.
T Consensus 87 m~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 87 MMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp EEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred EEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 3 333 122 2467777766544
No 231
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.16 E-value=0.0044 Score=55.60 Aligned_cols=85 Identities=13% Similarity=0.261 Sum_probs=58.2
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC-CCCeEE--Ee-------------------------------------
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS-SIPHFA--IE------------------------------------- 119 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~-~~~~v~--~~------------------------------------- 119 (320)
+.+.+++.|.-+.||+|+++.+.+.++.+.-+ .+..+- ..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 34678999999999999999988877654311 000000 00
Q ss_pred ----cc----CCChhHHHhCCCCccCeEEEEeC-ceeEEEeCCCCHHHHHHHHH
Q 020846 120 ----ES----AIRPSILSKYGVHGFPTLFLLNS-SMRVRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 120 ----~~----~~~~~l~~~~~V~~~Pti~l~~g-~~~~~~~G~~~~~~l~~~i~ 164 (320)
+| +++.++.+++||+++||+++-++ +.+....|..+.++|.+.+.
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 00 01235788899999999999853 45557789999999988764
No 232
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.16 E-value=0.003 Score=52.95 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=29.9
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~ 112 (320)
..++.++.|+...||+|+++.+.+..+.+++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 457899999999999999999999999888765
No 233
>PHA03050 glutaredoxin; Provisional
Probab=97.16 E-value=0.00084 Score=52.12 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=41.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC----hhHHHhCCCCccCeEEEEeCce
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVHGFPTLFLLNSSM 146 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~V~~~Pti~l~~g~~ 146 (320)
++.|..+|||+|++....+++..-+.+....+.+++.+.. ..+.+..|...+|++++ +|+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI-~g~~ 79 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF-GKTS 79 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE-CCEE
Confidence 6779999999999999999887544333334444332222 34556678889999954 6643
No 234
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.11 E-value=0.00031 Score=48.22 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=37.8
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|..+||++|++....+++.. ..+...|.+.++ .+.+..|..++|++++ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~------i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG------IPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT------BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC------CeeeEcccccchhHHHHHHHHcCCCccCEEEE-CCE
Confidence 57899999999999999885543 334444544443 3444459999999986 543
No 235
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.10 E-value=0.0016 Score=45.49 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=37.2
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCcee
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSSMR 147 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~~~ 147 (320)
++.|+++||++|++..+.+++.. ..+...|.+.+. .+.+..+...+|++++ +|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~-~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIFI-NGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCEEE
Confidence 56799999999999999998775 222233433333 3444567788897743 65433
No 236
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.09 E-value=0.0017 Score=46.26 Aligned_cols=69 Identities=19% Similarity=0.401 Sum_probs=42.5
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
++.|..+||++|.+.+..+++..-.| ..+.++.......+....|...+|.++ ++|+.+ | ..++|.+|+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~---~~~~v~~~~~~~~~~~~~g~~~vP~if-i~g~~i----g--g~~~l~~~l 71 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISY---EEIPLGKDITGRSLRAVTGAMTVPQVF-IDGELI----G--GSDDLEKYF 71 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc---EEEECCCChhHHHHHHHhCCCCcCeEE-ECCEEE----e--CHHHHHHHh
Confidence 67799999999999998888642222 122222111123344456889999984 366432 3 357777765
No 237
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.02 E-value=0.0046 Score=53.73 Aligned_cols=32 Identities=16% Similarity=0.407 Sum_probs=26.9
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcCC
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSF---SVLSSLYSS 112 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~~ 112 (320)
+++.+|+|+.-.||||.++.|.+ +.+.+.+++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 35679999999999999999876 777887764
No 238
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.01 E-value=0.0037 Score=45.77 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=59.5
Q ss_pred EEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEe---CceeEEEeCCCCHHHHH
Q 020846 84 VAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN---SSMRVRYHGSRTLDSLV 160 (320)
Q Consensus 84 vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~---g~~~~~~~G~~~~~~l~ 160 (320)
.++.|..+.|+-|......++++....+ ..+..+|.+.++.+..+|+. .+|.+.+-+ ........+..+.+.|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHH
Confidence 3678999999999999999998766654 56667788889999999995 799977642 11255666788999999
Q ss_pred HHHH
Q 020846 161 AFYS 164 (320)
Q Consensus 161 ~~i~ 164 (320)
++|+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9885
No 239
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.93 E-value=0.00027 Score=55.36 Aligned_cols=47 Identities=9% Similarity=-0.104 Sum_probs=38.3
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHH---------------HHHHHHhhhchhHhhhhchh
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f---------------~~~~~~i~~~Pti~~~~~~~ 243 (320)
.++.|+. +||++|+.+ .+.+++++..+ +..+|+|...||+.+|.+|.
T Consensus 25 vvv~f~a------~wC~~C~~~--~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~ 86 (113)
T cd02975 25 LVVFSSK------EGCQYCEVT--KQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGG 86 (113)
T ss_pred EEEEeCC------CCCCChHHH--HHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCe
Confidence 4555553 999999999 99999999865 12889999999999998764
No 240
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.92 E-value=0.0033 Score=46.51 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=42.5
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc----C----------------------------CChhHHHhCC
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES----A----------------------------IRPSILSKYG 132 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~----~----------------------------~~~~l~~~~~ 132 (320)
++.|+.+.||+|..+.+.++++....++...+..... . .+..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999866655333322211 0 1234677889
Q ss_pred CCccCeEEEEe
Q 020846 133 VHGFPTLFLLN 143 (320)
Q Consensus 133 V~~~Pti~l~~ 143 (320)
+.++||+++.+
T Consensus 81 ~~g~Pt~v~~~ 91 (98)
T cd02972 81 VTGTPTFVVNG 91 (98)
T ss_pred CCCCCEEEECC
Confidence 99999999854
No 241
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.80 E-value=0.0079 Score=42.79 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=42.5
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHH---hCCCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILS---KYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~---~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~ 161 (320)
..|..++|++|++.+..+++. ++. +...|.++++.... +.|..++|++++ +|. ...|+.+.+.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~-~~~~di~~~~~~~~~~~~~g~~~vP~v~~-~g~---~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIA-FEEINIDEQPEAIDYVKAQGFRQVPVIVA-DGD---LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHcCCcccCEEEE-CCC---cEEeccCHHHHHh
Confidence 568889999999999999763 332 23334444544433 348889999755 443 2445566666654
No 242
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.78 E-value=0.0048 Score=45.23 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=48.3
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhH---HHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSI---LSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVA 161 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l---~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~ 161 (320)
+..|..+||++|++.+..+++. ++. +...|.+.+++. ....|...+|++++ ++. ..++.+.+.|.+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~-~~~idi~~~~~~~~~~~~~g~~~vPvv~i-~~~----~~~Gf~~~~l~~ 71 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR-----GFD-FEMINVDRVPEAAETLRAQGFRQLPVVIA-GDL----SWSGFRPDMINR 71 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHcCCCCcCEEEE-CCE----EEecCCHHHHHH
Confidence 5678899999999999888653 433 333355555542 23457889999965 442 234667888888
Q ss_pred HHHHhh
Q 020846 162 FYSDVT 167 (320)
Q Consensus 162 ~i~~~~ 167 (320)
.+..+.
T Consensus 72 ~~~~~~ 77 (81)
T PRK10329 72 LHPAPH 77 (81)
T ss_pred HHHhhh
Confidence 876654
No 243
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.75 E-value=0.011 Score=50.13 Aligned_cols=103 Identities=17% Similarity=0.294 Sum_probs=76.8
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCc
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHG 135 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~ 135 (320)
-+.|..+++.+ |.+.+.+ ...+-.|+|..|...-+.|.-+...++.|+.+|+.+.+|.+...+. ...|-=..
T Consensus 90 fG~V~~ISg~d--yv~EVT~--As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c----IpNYPe~n 161 (240)
T KOG3170|consen 90 FGEVFPISGPD--YVKEVTK--ASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC----IPNYPESN 161 (240)
T ss_pred ccceeeccchH--HHHHHHh--ccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc----cCCCcccC
Confidence 46688888888 6555332 2456678999999999999999999999999999998888864332 23456678
Q ss_pred cCeEEEE-eCceeEEEeC------C-CCHHHHHHHHHHh
Q 020846 136 FPTLFLL-NSSMRVRYHG------S-RTLDSLVAFYSDV 166 (320)
Q Consensus 136 ~Pti~l~-~g~~~~~~~G------~-~~~~~l~~~i~~~ 166 (320)
.||+++| .|.....+.| . .+.+++..++-+.
T Consensus 162 lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 162 LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 9999999 6765544443 3 3677888777654
No 244
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.62 E-value=0.019 Score=56.89 Aligned_cols=137 Identities=9% Similarity=0.055 Sum_probs=86.3
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCc-eeEEEeCCCCHH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLD 157 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~-~~~~~~G~~~~~ 157 (320)
-.+++-+.++.+-|..|..+...++++++.-+. +.+...+.+ ...|++.+. +|+ .-++|.|-..-.
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~-i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~ 84 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLSDK-ITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGH 84 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccH
Confidence 345555555555799999999999999887643 333332211 347999888 443 358999988778
Q ss_pred HHHHHHHHhhCC--CCCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHH-----------
Q 020846 158 SLVAFYSDVTGM--NTASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAF----------- 223 (320)
Q Consensus 158 ~l~~~i~~~~~~--~~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f----------- 223 (320)
++..||...+.. ....++++..+.+-.-... .+..|.. |.|..|.+. ......+|..-
T Consensus 85 Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~------~~Cp~Cp~~--v~~~~~~a~~~~~i~~~~id~~ 156 (517)
T PRK15317 85 EFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVS------LSCHNCPDV--VQALNLMAVLNPNITHTMIDGA 156 (517)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEc------CCCCCcHHH--HHHHHHHHHhCCCceEEEEEch
Confidence 888887776542 2333444444433322223 3444443 778888887 66777777652
Q ss_pred ----HHHHHHhhhchhH
Q 020846 224 ----VLLRLVYIFLPTL 236 (320)
Q Consensus 224 ----~~~~~~i~~~Pti 236 (320)
+..+|+|...|++
T Consensus 157 ~~~~~~~~~~v~~VP~~ 173 (517)
T PRK15317 157 LFQDEVEARNIMAVPTV 173 (517)
T ss_pred hCHhHHHhcCCcccCEE
Confidence 1267777777776
No 245
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.61 E-value=0.0041 Score=45.02 Aligned_cols=54 Identities=15% Similarity=0.416 Sum_probs=35.9
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|..+|||+|++....+++..-. +...+.+.++ .+.+..|..++|++++ +|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~------~~~~di~~~~~~~~~~~~~~g~~~vP~i~i-~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT------FTEIRVDGDPALRDEMMQRSGRRTVPQIFI-GDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC------cEEEEecCCHHHHHHHHHHhCCCCcCEEEE-CCE
Confidence 3578899999999999999865322 2222333443 3444558889999843 664
No 246
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.58 E-value=0.0031 Score=48.14 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChh----HHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPS----ILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~----l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|..+|||+|++....++++.-.| ..+.++..+...+ +.+..|...+|+++ ++|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~~---~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf-i~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVNP---AVHEIDKEPAGKDIENALSRLGCSPAVPAVF-VGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCC---EEEEcCCCccHHHHHHHHHHhcCCCCcCeEE-ECCE
Confidence 66799999999999999887764333 2333332222222 34445788999974 3663
No 247
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.53 E-value=0.00057 Score=49.99 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=45.6
Q ss_pred ChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHH---------------HHHHHHhhhchhHhhhhch
Q 020846 178 SPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF---------------VLLRLVYIFLPTLLIFAQF 242 (320)
Q Consensus 178 ~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f---------------~~~~~~i~~~Pti~~~~~~ 242 (320)
+|++.+......++.|+. +||..|..+ .+.+.+++... ...++++.++||+.++.+|
T Consensus 2 ~~~~~~~~~~~~ll~~~~------~~C~~C~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 2 EFEELIKSAKPVVVDFWA------PWCGPCKAI--APVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG 73 (93)
T ss_pred chHHHHhcCCcEEEEEEC------CCChhHHHh--hHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECC
Confidence 456666665556777765 899999999 99999988873 1278999999999999877
Q ss_pred h
Q 020846 243 T 243 (320)
Q Consensus 243 ~ 243 (320)
.
T Consensus 74 ~ 74 (93)
T cd02947 74 K 74 (93)
T ss_pred E
Confidence 5
No 248
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.51 E-value=0.00051 Score=51.99 Aligned_cols=55 Identities=15% Similarity=0.005 Sum_probs=42.4
Q ss_pred hhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhhhhchh
Q 020846 181 KVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 181 ~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~~~~~~ 243 (320)
..+..... +++.|+. +||+.|+.+ .+..+.++..+. ..+++|.++||+.+|.+|.
T Consensus 7 ~~~~~~~~~vlv~f~a------~~C~~C~~~--~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~ 78 (97)
T cd02949 7 KLYHESDRLILVLYTS------PTCGPCRTL--KPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE 78 (97)
T ss_pred HHHHhCCCeEEEEEEC------CCChhHHHH--HHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe
Confidence 33333333 6777764 999999999 899999888773 1788999999999997765
No 249
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.42 E-value=0.023 Score=42.86 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=70.2
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCC--ChhHHHhCCCC----ccCeE-EE
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAI--RPSILSKYGVH----GFPTL-FL 141 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~--~~~l~~~~~V~----~~Pti-~l 141 (320)
|.++ .+...-|+|.|..+--. -......+.++|+..+|...+..+||.. .+.||+++.|. --|.. .=
T Consensus 12 fKKL-----LRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 12 FKKL-----LRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred HHHH-----HhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 6555 45566788888776533 3344558999999999999999999976 67899999998 55544 33
Q ss_pred E-eCceeEEEeCCCCHHHHHHHHHH
Q 020846 142 L-NSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 142 ~-~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
| +|.--..|.-..+..+++.|+.+
T Consensus 86 YKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccccccchhhHHHHHHHhhC
Confidence 5 78888899999999999999975
No 250
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.35 E-value=0.017 Score=41.11 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=37.0
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|..+||++|++....+++. ++. +...|.+.++ .+.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~-~~~~di~~~~~~~~el~~~~g~~~vP~v~i-~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLP-YVEINIDIFPERKAELEERTGSSVVPQIFF-NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCc-eEEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCE
Confidence 5678999999999999999874 322 2233444444 4556667788999844 653
No 251
>PHA02125 thioredoxin-like protein
Probab=96.35 E-value=0.0005 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=28.8
Q ss_pred ccCCCcccccChHHHHHHHHHHH----------HHHHHhhhchhHh
Q 020846 202 SWARSPENLLQQETYLALATAFV----------LLRLVYIFLPTLL 237 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~----------~~~~~i~~~Pti~ 237 (320)
+||++|+.+ .|.++.++..|. ..+|+|.++||+.
T Consensus 8 ~wC~~Ck~~--~~~l~~~~~~~~~vd~~~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 8 EWCANCKMV--KPMLANVEYTYVDVDTDEGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CCCHhHHHH--HHHHHHHhheEEeeeCCCCHHHHHHcCCceeCeEE
Confidence 999999999 999888765553 2889999999987
No 252
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.023 Score=46.95 Aligned_cols=102 Identities=20% Similarity=0.277 Sum_probs=70.0
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhhHHHHHHHHHHcCC--CCeEEEe--c------------
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIE--E------------ 120 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~--~------------ 120 (320)
.....+++.+++.++ .+++|+++|| ..++|-|-..+-.|++...+|.. ...+++. .
T Consensus 14 ~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 14 ELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred EeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 344456666778877 6679999999 78999999999999998888864 4444442 1
Q ss_pred ------cCCChhHHHhCCCCc------------cCeEEEE--eCceeEEEeCC---CCHHHHHHHHHHh
Q 020846 121 ------SAIRPSILSKYGVHG------------FPTLFLL--NSSMRVRYHGS---RTLDSLVAFYSDV 166 (320)
Q Consensus 121 ------~~~~~~l~~~~~V~~------------~Pti~l~--~g~~~~~~~G~---~~~~~l~~~i~~~ 166 (320)
.|.+..+++.|||.. .++.+++ +|.....+... -..+++.+.+++.
T Consensus 87 L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 87 LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 234567888998854 4566777 56666666443 2456777776654
No 253
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.32 E-value=0.017 Score=41.07 Aligned_cols=54 Identities=11% Similarity=0.368 Sum_probs=35.6
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChh----HHHhCCCC-ccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPS----ILSKYGVH-GFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~----l~~~~~V~-~~Pti~l~~g~ 145 (320)
++.|..+||++|++....+++. ++ .+...+.+.+++ +.+..+.. ++|++++ +|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i-~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i-~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GV-DYEEIDVDGDPALREEMINRSGGRRTVPQIFI-GDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CC-cEEEEECCCCHHHHHHHHHHhCCCCccCEEEE-CCE
Confidence 5678999999999999999874 32 222334444433 34446766 8998753 664
No 254
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.17 E-value=0.00074 Score=53.65 Aligned_cols=62 Identities=6% Similarity=-0.035 Sum_probs=45.3
Q ss_pred CCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------------------------HHH
Q 020846 174 LDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------------LRL 228 (320)
Q Consensus 174 l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------------------------~~~ 228 (320)
++.+++.+.+.+....++.|+. +||++|+.+ .|.+..++..... .++
T Consensus 11 it~~~~~~~i~~~~~~iv~f~~------~~Cp~C~~~--~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 11 TTVVRALEALDKKETATFFIGR------KTCPYCRKF--SGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred cCHHHHHHHHHcCCcEEEEEEC------CCChhHHHH--hHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4455677777666666777764 999999999 9999999976421 222
Q ss_pred ----HhhhchhHhhhhchh
Q 020846 229 ----VYIFLPTLLIFAQFT 243 (320)
Q Consensus 229 ----~i~~~Pti~~~~~~~ 243 (320)
.|.+-||+.+|.+|.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred CCcccCCCCCEEEEEeCCe
Confidence 345589998888886
No 255
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.12 E-value=0.0015 Score=51.53 Aligned_cols=51 Identities=8% Similarity=0.018 Sum_probs=37.1
Q ss_pred CCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-----------------HHHHHhhh--chhHhhhh-chh
Q 020846 185 ASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV-----------------LLRLVYIF--LPTLLIFA-QFT 243 (320)
Q Consensus 185 ~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~-----------------~~~~~i~~--~Pti~~~~-~~~ 243 (320)
+.+.+++.|++ +||++|+.+ .+.+...+.... ..+|.+.+ +||+.+|. +|.
T Consensus 18 ~~kpVlV~F~a------~WC~~C~~~--~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHK------TWCGACKAL--KPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeC------CcCHHHHHH--HHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCC
Confidence 34457888875 999999999 888887665431 15666765 89998884 655
No 256
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.02 E-value=0.0015 Score=51.56 Aligned_cols=64 Identities=14% Similarity=-0.092 Sum_probs=43.5
Q ss_pred CChhhhccCC--CcccccccCCCc-CCcccCCCcccccChHHHHHHHHHHHH-----------------------HHHHh
Q 020846 177 ISPDKVGKAS--NHEKHNNTEEES-CPFSWARSPENLLQQETYLALATAFVL-----------------------LRLVY 230 (320)
Q Consensus 177 ~~~~~~~~~~--~~~~~~f~~~~~-~~~~wc~~c~~~~~~~~~~~la~~f~~-----------------------~~~~i 230 (320)
++|++.+... ..+++.|++... .-.+||++|+.+ .|.++.++..+.. .++.|
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~--~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I 87 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKA--EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL 87 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhh--chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence 4455555543 237778876311 113799999999 9999999988741 44566
Q ss_pred h-hchhHhhhhch
Q 020846 231 I-FLPTLLIFAQF 242 (320)
Q Consensus 231 ~-~~Pti~~~~~~ 242 (320)
. +.||+.+|..|
T Consensus 88 ~~~iPT~~~~~~~ 100 (119)
T cd02952 88 TTGVPTLLRWKTP 100 (119)
T ss_pred ccCCCEEEEEcCC
Confidence 6 88998888544
No 257
>PTZ00062 glutaredoxin; Provisional
Probab=95.90 E-value=0.00074 Score=58.46 Aligned_cols=62 Identities=16% Similarity=-0.008 Sum_probs=47.0
Q ss_pred CCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------HHHHhhhchhHhhhhchhhh
Q 020846 176 KISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------LRLVYIFLPTLLIFAQFTWR 245 (320)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------~~~~i~~~Pti~~~~~~~~~ 245 (320)
.+++++++.+... .++.|. + +||.+|+.| .|.+.+|+..|-. ..|+|.+.||+.+|.+|.-+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~----a--~w~~~C~~m--~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVK----S--SKEPEYEQL--MDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNSQLI 75 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEe----C--CCCcchHHH--HHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECCEEE
Confidence 3456666654423 555554 3 999999999 9999999998732 55999999999999988643
No 258
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.82 E-value=0.099 Score=51.86 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=82.5
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eCc-eeEEEeCCCCHHH
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NSS-MRVRYHGSRTLDS 158 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g~-~~~~~~G~~~~~~ 158 (320)
+.+.++.|.. -|..|..+...++++++.-+. +.+...+.+ ....|++.+. +|+ .-++|.|-..-.+
T Consensus 19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~k-i~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g~E 86 (515)
T TIGR03140 19 NPVTLVLSAG-SHEKSKELLELLDEIASLSDK-ISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGGHE 86 (515)
T ss_pred CCEEEEEEeC-CCchhHHHHHHHHHHHHhCCC-eEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCcHH
Confidence 3444555555 699999999999999887643 333332211 1356999888 543 4589999877777
Q ss_pred HHHHHHHhhCCC--CCCCCCCChhhhccCCCc-ccccccCCCcCCcccCCCcccccChHHHHHHHHHH------------
Q 020846 159 LVAFYSDVTGMN--TASLDKISPDKVGKASNH-EKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------ 223 (320)
Q Consensus 159 l~~~i~~~~~~~--~~~l~~~~~~~~~~~~~~-~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f------------ 223 (320)
+..||...+... ...++++..+.+-.-... .+..|.. |-|..|... ......++...
T Consensus 87 f~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~------~~Cp~Cp~~--v~~~~~~a~~~p~i~~~~id~~~ 158 (515)
T TIGR03140 87 FTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVS------LTCQNCPDV--VQALNQMALLNPNISHTMIDGAL 158 (515)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEe------CCCCCCHHH--HHHHHHHHHhCCCceEEEEEchh
Confidence 777777765322 344554444444332223 3334432 566777776 55556666542
Q ss_pred ---HHHHHHhhhchhHh
Q 020846 224 ---VLLRLVYIFLPTLL 237 (320)
Q Consensus 224 ---~~~~~~i~~~Pti~ 237 (320)
...+|+|...|++.
T Consensus 159 ~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 159 FQDEVEALGIQGVPAVF 175 (515)
T ss_pred CHHHHHhcCCcccCEEE
Confidence 12666777677763
No 259
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.82 E-value=0.15 Score=38.89 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-e-CceeEEE-eCCCCH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-N-SSMRVRY-HGSRTL 156 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~-g~~~~~~-~G~~~~ 156 (320)
.+..++|-|+..--. .....|.++|+.+.....+++. .+..+...+++. .|+++++ + ......| .|..+.
T Consensus 18 ~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~e~~~~y~~g~~~~ 90 (102)
T cd03066 18 EDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFMEEPVTIPDKPYSE 90 (102)
T ss_pred cCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCCCCCcccCCCCCCH
Confidence 566777777766443 4556789999998665566553 245677788775 7999999 4 5556678 778899
Q ss_pred HHHHHHHHHh
Q 020846 157 DSLVAFYSDV 166 (320)
Q Consensus 157 ~~l~~~i~~~ 166 (320)
+.|.+||...
T Consensus 91 ~~l~~fi~~~ 100 (102)
T cd03066 91 EELVDFVEEH 100 (102)
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 260
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.81 E-value=0.17 Score=38.82 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=56.3
Q ss_pred HHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCC----hhHHHhCCCC-ccCeEEEE-
Q 020846 69 LQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIR----PSILSKYGVH-GFPTLFLL- 142 (320)
Q Consensus 69 f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~----~~l~~~~~V~-~~Pti~l~- 142 (320)
|+++.+ ...+++++|+=.++.||-+......|++..+..++...+...+.-++ ..++++|||. .-|.++++
T Consensus 10 l~~i~~---~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~ 86 (105)
T PF11009_consen 10 LEEILE---ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIK 86 (105)
T ss_dssp HHHHHH---H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEE
T ss_pred HHHHHH---hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEE
Confidence 565522 23578888888999999999999999999999887444444444333 4688999997 79999999
Q ss_pred eCceeEEEe-CCCCHHHH
Q 020846 143 NSSMRVRYH-GSRTLDSL 159 (320)
Q Consensus 143 ~g~~~~~~~-G~~~~~~l 159 (320)
+|+.+..-. +..+.+.|
T Consensus 87 ~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 87 NGKVVWHASHWDITAEAL 104 (105)
T ss_dssp TTEEEEEEEGGG-SHHHH
T ss_pred CCEEEEECccccCCHHhc
Confidence 777776543 35666665
No 261
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.78 E-value=0.038 Score=46.75 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=22.7
Q ss_pred EEEcCCCHHHHhhHHHHHHHHHHcCCCC
Q 020846 87 LFYASWCPFSRNFRPSFSVLSSLYSSIP 114 (320)
Q Consensus 87 ~Fya~wC~~Ck~~~p~~~~la~~~~~~~ 114 (320)
.|.-|.|+.|-.+.|.+.++..+|++.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5899999999999999999999998644
No 262
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.017 Score=42.23 Aligned_cols=57 Identities=11% Similarity=0.369 Sum_probs=35.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC--CChhHHHhC-CCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA--IRPSILSKY-GVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~--~~~~l~~~~-~V~~~Pti~l~~g~ 145 (320)
++.|..++||+|++....+++..-.| ..+.+++.+ +..+..++- |...+|+|++ +++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~---~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i-~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY---EEIDVDDDEPEEAREMVKRGKGQRTVPQIFI-GGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc---EEEEecCCcHHHHHHHHHHhCCCCCcCEEEE-CCE
Confidence 56788999999999998888442222 122222221 112344444 7899999887 443
No 263
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.67 E-value=0.13 Score=45.25 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCccEEEeCcc-hhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCC
Q 020846 56 QDIVGVIEGDE-VSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIP 114 (320)
Q Consensus 56 ~~~v~~l~~~~-~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~ 114 (320)
+.+|..+++.+ .++-+. .+.++|.+|.|.+-.||+=..-.+.|++++++|.++.
T Consensus 81 ns~vv~l~g~~~~~ildf-----~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~a 135 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDF-----AKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVA 135 (237)
T ss_pred CCceEeeCCCcceeHHHh-----ccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhh
Confidence 77788888888 667666 5788999999999999999999999999999998754
No 264
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.59 E-value=0.17 Score=38.69 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=57.9
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeC--------ceeEEE
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS--------SMRVRY 150 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g--------~~~~~~ 150 (320)
..++.++|-|+..--. .....|.++|+.+.+...++.. .+..+..++++ .|++++|++ .....|
T Consensus 16 ~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~~~k~de~~~~y 87 (104)
T cd03069 16 SDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRLSNKFEDSSVKF 87 (104)
T ss_pred ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEechhhhcccCcccccc
Confidence 4567777777766433 4667888999998665566553 23577888988 788888822 334569
Q ss_pred eCCCCHHHHHHHHHHh
Q 020846 151 HGSRTLDSLVAFYSDV 166 (320)
Q Consensus 151 ~G~~~~~~l~~~i~~~ 166 (320)
.|..+.+.|.+||...
T Consensus 88 ~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 88 DGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcCCHHHHHHHHHhh
Confidence 9988999999999864
No 265
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.54 E-value=0.0041 Score=45.00 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=30.2
Q ss_pred ccCCCcccccChHHHHHHHHHHH----------------HHHHHhhhchhHhh
Q 020846 202 SWARSPENLLQQETYLALATAFV----------------LLRLVYIFLPTLLI 238 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~----------------~~~~~i~~~Pti~~ 238 (320)
|||++|+.+ .+.++.++..+. ..++++.+.||+.+
T Consensus 9 ~~C~~C~~~--~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 9 PTCPYCPAA--KRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred CCCcchHHH--HHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE
Confidence 999999999 999999998873 27888999999864
No 266
>PRK10638 glutaredoxin 3; Provisional
Probab=95.29 E-value=0.02 Score=41.91 Aligned_cols=54 Identities=11% Similarity=0.310 Sum_probs=35.8
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
++.|..+||++|++....+++..-.| ...+.+.++ .+.+..|...+|++++ +|+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y------~~~dv~~~~~~~~~l~~~~g~~~vP~i~~-~g~ 61 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF------QEIPIDGDAAKREEMIKRSGRTTVPQIFI-DAQ 61 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc------EEEECCCCHHHHHHHHHHhCCCCcCEEEE-CCE
Confidence 56788899999999999988753222 223443333 3455568888998743 553
No 267
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.15 E-value=0.004 Score=49.33 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=36.8
Q ss_pred hhhhccCC-CcccccccCCCcCCcccCCCcccccChHHHH---HHH----HHH-------------------------HH
Q 020846 179 PDKVGKAS-NHEKHNNTEEESCPFSWARSPENLLQQETYL---ALA----TAF-------------------------VL 225 (320)
Q Consensus 179 ~~~~~~~~-~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~---~la----~~f-------------------------~~ 225 (320)
++....+. +.+++.|++ +||++|+.+ .+.+. .+. ..| +.
T Consensus 6 ~~~a~~~~~k~vlv~f~a------~wC~~C~~~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~ 77 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQ------PGCPYCDKL--KRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELA 77 (125)
T ss_pred HHHHHHcCCCcEEEEEeC------CCCHHHHHH--HHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHH
Confidence 34445555 557788875 999999998 54432 222 222 23
Q ss_pred HHHHhhhchhHhhhhch
Q 020846 226 LRLVYIFLPTLLIFAQF 242 (320)
Q Consensus 226 ~~~~i~~~Pti~~~~~~ 242 (320)
.+|+|.++||+.+|.++
T Consensus 78 ~~~~v~~~Pt~~~~~~~ 94 (125)
T cd02951 78 RKYRVRFTPTVIFLDPE 94 (125)
T ss_pred HHcCCccccEEEEEcCC
Confidence 57888899998888775
No 268
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.01 E-value=0.0033 Score=47.68 Aligned_cols=46 Identities=17% Similarity=0.038 Sum_probs=39.0
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH----------------HHHHhh--hchhHhhhhc
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----------------LRLVYI--FLPTLLIFAQ 241 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~----------------~~~~i~--~~Pti~~~~~ 241 (320)
..++.|++ +||++|+.+ .+.++.+|..|.. ..+++. ++|++.++..
T Consensus 14 ~~~~~f~~------~~~~~~~~~--~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 14 PLLVLFYN------KDDSESEEL--RERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred CEEEEEEc------CChhhHHHH--HHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 35666664 899999999 9999999999942 788898 9999999987
No 269
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.70 E-value=0.018 Score=43.00 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 91 ~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
|||++|++....+++..-.| ...|.+.+. .+.+..|-..+|++++ +|+
T Consensus 21 ~~Cp~C~~ak~~L~~~~i~y------~~idv~~~~~~~~~l~~~~g~~tvP~vfi-~g~ 72 (90)
T cd03028 21 PRCGFSRKVVQILNQLGVDF------GTFDILEDEEVRQGLKEYSNWPTFPQLYV-NGE 72 (90)
T ss_pred CCCcHHHHHHHHHHHcCCCe------EEEEcCCCHHHHHHHHHHhCCCCCCEEEE-CCE
Confidence 79999999999998764322 222333333 3455568889999843 664
No 270
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=94.70 E-value=0.0084 Score=43.25 Aligned_cols=38 Identities=5% Similarity=-0.051 Sum_probs=31.3
Q ss_pred ccCCCcccccChHHHHHHHHHHH-------------HHHHHhhhchhHhhhhchh
Q 020846 202 SWARSPENLLQQETYLALATAFV-------------LLRLVYIFLPTLLIFAQFT 243 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~-------------~~~~~i~~~Pti~~~~~~~ 243 (320)
+||++|+.+ .|.+++++..+- ..+|++.+-||+.+ +|.
T Consensus 8 ~~C~~C~~~--~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~ 58 (76)
T TIGR00412 8 TGCANCQMT--EKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGE 58 (76)
T ss_pred CCCcCHHHH--HHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCE
Confidence 999999999 999999998862 26788888898876 554
No 271
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.69 E-value=0.029 Score=42.59 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=31.2
Q ss_pred CCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCCCccCeEEEEeCc
Q 020846 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 91 ~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V~~~Pti~l~~g~ 145 (320)
||||+|++....++++.-.| . ..|.+.++ .+.+..|...+|.+++ +|+
T Consensus 25 ~~Cp~C~~ak~lL~~~~i~~-----~-~~di~~~~~~~~~l~~~tg~~tvP~vfi-~g~ 76 (97)
T TIGR00365 25 PQCGFSARAVQILKACGVPF-----A-YVNVLEDPEIRQGIKEYSNWPTIPQLYV-KGE 76 (97)
T ss_pred CCCchHHHHHHHHHHcCCCE-----E-EEECCCCHHHHHHHHHHhCCCCCCEEEE-CCE
Confidence 99999999999998764322 2 22333333 3445567788998854 553
No 272
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.35 E-value=0.052 Score=44.88 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=41.7
Q ss_pred CcchhHHHHHhHHhhcCCCeEEEEEE-cCCCHHHHhh-HHHHHHHHHHcC--CCC-eEEE--eccCCChhHHHhCCC
Q 020846 64 GDEVSLQMALNMVHKNSHEYVAVLFY-ASWCPFSRNF-RPSFSVLSSLYS--SIP-HFAI--EESAIRPSILSKYGV 133 (320)
Q Consensus 64 ~~~~~f~~~~~~~~~~~~~~vlV~Fy-a~wC~~Ck~~-~p~~~~la~~~~--~~~-~v~~--~~~~~~~~l~~~~~V 133 (320)
++.+++.++ . .++++++.|| +.||+.|... .+.|.+..++|. +.. .+++ ++.......++++++
T Consensus 18 g~~v~L~~~-----~-~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 18 PNPVNLSEL-----F-KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CceeeHHHH-----h-CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 566667774 1 3344555555 8999999998 999999999885 332 3333 222334556777776
No 273
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=94.26 E-value=0.12 Score=44.48 Aligned_cols=103 Identities=14% Similarity=0.225 Sum_probs=72.0
Q ss_pred ccEEE-eCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCcc
Q 020846 58 IVGVI-EGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGF 136 (320)
Q Consensus 58 ~v~~l-~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~ 136 (320)
.|..+ +++. |-+.+++-+ +.-.++|..|-+--+-|..+...+.-||.+|+-+.++.+- . .+-....+|...++
T Consensus 139 ~V~El~~gkq--fld~idke~--ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckik-s-s~~gas~~F~~n~l 212 (273)
T KOG3171|consen 139 FVYELETGKQ--FLDTIDKEL--KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIK-S-SNTGASDRFSLNVL 212 (273)
T ss_pred eEEEeccchh--HHHHHhccc--ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEee-e-ccccchhhhcccCC
Confidence 34444 4555 555533221 3356789999999999999999999999999876655553 2 35556789999999
Q ss_pred CeEEEE-eCceeEEEe-------CCCCHHHHHHHHHHh
Q 020846 137 PTLFLL-NSSMRVRYH-------GSRTLDSLVAFYSDV 166 (320)
Q Consensus 137 Pti~l~-~g~~~~~~~-------G~~~~~~l~~~i~~~ 166 (320)
||+.+| +|..+..|. ......+|..|++..
T Consensus 213 P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999 554433332 234567777787765
No 274
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.012 Score=50.68 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=50.1
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-----------------HHHHhh------hchhHhhhhchhhh
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-----------------LRLVYI------FLPTLLIFAQFTWR 245 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-----------------~~~~i~------~~Pti~~~~~~~~~ 245 (320)
+++.|++ .|..+|.+. +|.|-+|+.+|.+ .||+|. ..||+.+|.+|.-+
T Consensus 147 WlIeFfa------~ws~~Cv~~--spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 147 WLIEFFA------CWSPKCVRF--SPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEEe------ecChhhccc--ccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhh
Confidence 8899986 899999999 9999999999954 777775 46999999999988
Q ss_pred hhhhhcccc
Q 020846 246 RLIRNLKLG 254 (320)
Q Consensus 246 ~~~~~~~~~ 254 (320)
-..|.++..
T Consensus 219 ~RrP~vd~~ 227 (265)
T KOG0914|consen 219 SRRPDVDVK 227 (265)
T ss_pred hcCcccccc
Confidence 888877763
No 275
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=93.70 E-value=0.017 Score=40.16 Aligned_cols=33 Identities=6% Similarity=-0.098 Sum_probs=24.9
Q ss_pred ccCCCcccccChHHHHHHHHHHH---------------HHHHHhhhchhH
Q 020846 202 SWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTL 236 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~---------------~~~~~i~~~Pti 236 (320)
+||++|+.+ .+.++.++..+- ..++++.+.||+
T Consensus 9 ~~C~~C~~~--~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti 56 (67)
T cd02973 9 PTCPYCPDA--VQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAI 56 (67)
T ss_pred CCCCCcHHH--HHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEE
Confidence 899999999 899998876542 155666666665
No 276
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.27 Score=37.74 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=34.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHH----hCCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILS----KYGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~----~~~V~~~Pti~l~~g~ 145 (320)
+|.|-.+||+.|+++...|.+ +.- ...+..|+.....++-+ --+-+.+|.+++ +|+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI-~Gk 76 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI-GGK 76 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE-CCE
Confidence 566999999999998888877 322 23344433333333333 234567888766 553
No 277
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.82 Score=40.42 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=30.0
Q ss_pred hHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 020846 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 126 ~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
.++.++||.+.||+++-++ .+.|..+.++|.+.|...
T Consensus 206 ~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHh
Confidence 5677889999999988543 788888899999888764
No 278
>PRK10824 glutaredoxin-4; Provisional
Probab=93.00 E-value=0.12 Score=40.46 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=29.3
Q ss_pred CCCHHHHhhHHHHHHHHHHcCCCCeEEEecc-CCChhHHHhCCCCccCeEEEEeCc
Q 020846 91 SWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 91 ~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~V~~~Pti~l~~g~ 145 (320)
||||+|++....++.+...| ..+.+++. +....+.+.-|-..+|.+++ +|+
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~---~~idi~~d~~~~~~l~~~sg~~TVPQIFI-~G~ 79 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERF---AYVDILQNPDIRAELPKYANWPTFPQLWV-DGE 79 (115)
T ss_pred CCCchHHHHHHHHHHcCCCc---eEEEecCCHHHHHHHHHHhCCCCCCeEEE-CCE
Confidence 69999999999998874333 22333221 11122333345666777655 553
No 279
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.58 E-value=0.14 Score=49.38 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=35.3
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh---hHHHh---------CCCCccCeEEEEeCc
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP---SILSK---------YGVHGFPTLFLLNSS 145 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~---~l~~~---------~~V~~~Pti~l~~g~ 145 (320)
++.|..+|||+|++....+++. ++..- .+|.++++ ++.++ .|.+.+|++++ +|+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~-~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi-~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFT-QISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV-GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeE-EEECCCChhHHHHHHHHhhccccccCCCCccCeEEE-CCE
Confidence 6789999999999999888775 33322 22333333 22222 47789999965 553
No 280
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=91.98 E-value=1.8 Score=36.44 Aligned_cols=36 Identities=31% Similarity=0.536 Sum_probs=29.9
Q ss_pred hHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHH
Q 020846 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 126 ~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~ 164 (320)
..+.++||.|+||+++ +|+ ..+.|....+.|.+.|+
T Consensus 158 ~~a~~~gv~GvP~~vv-~g~--~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 158 AEARQLGVFGVPTFVV-NGK--YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHTTCSSSSEEEE-TTT--EEEESCSSHHHHHHHH-
T ss_pred HHHHHcCCcccCEEEE-CCE--EEEECCCCHHHHHHHhC
Confidence 4677889999999999 666 78889999999988764
No 281
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=1.9 Score=35.35 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=38.7
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~ 112 (320)
+..++.+++++++|+++ .++++||.=.|+-|+.--+.. .++.|.++|++
T Consensus 7 d~~~~~~~G~~~~l~~~-------~GkVlLIVNtASkCGfTpQYe-gLe~Ly~ky~~ 55 (162)
T COG0386 7 DFSVKDIDGEPVSLSDY-------KGKVLLIVNTASKCGFTPQYE-GLEALYKKYKD 55 (162)
T ss_pred cceeeccCCCCccHHHh-------CCcEEEEEEcccccCCcHhHH-HHHHHHHHHhh
Confidence 45678889999999998 889999999999998765443 55666677764
No 282
>PRK09301 circadian clock protein KaiB; Provisional
Probab=91.30 E-value=0.91 Score=34.63 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHH-HcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~-~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~ 155 (320)
+..+++=.|.|..-+.+++....+.++-+ .+.+...+.++|..+++++++.++|-..||++=....+..+..|..+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 44678888899999999998888888766 45677888999999999999999999999977666778888899874
No 283
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=91.22 E-value=1 Score=33.31 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=61.8
Q ss_pred CeEEEEEEcCCCHHHHhhHHHHHHHHH-HcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCC
Q 020846 82 EYVAVLFYASWCPFSRNFRPSFSVLSS-LYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRT 155 (320)
Q Consensus 82 ~~vlV~Fya~wC~~Ck~~~p~~~~la~-~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~ 155 (320)
.+++=.|.|..-+.+++....+.++-+ .+.+...+.++|..+++++++.++|-..||++=....+..+..|..+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls 77 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLS 77 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeecccc
Confidence 466777888888999988888888765 45677888999999999999999999999977666777888888764
No 284
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=91.07 E-value=1.2 Score=31.68 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=51.6
Q ss_pred EEEEEEcCCCHHHHhhHHHHHHHHHHc-CCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEE
Q 020846 84 VAVLFYASWCPFSRNFRPSFSVLSSLY-SSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRY 150 (320)
Q Consensus 84 vlV~Fya~wC~~Ck~~~p~~~~la~~~-~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~ 150 (320)
.+..|-+..-+.+++....+.++-+++ ++...+.++|..+++++++.++|-..||++=....+..+.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P~P~rrl 70 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLPPPRRRL 70 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCCCCceEe
Confidence 455666666688888888888877765 5678899999999999999999999999765434444333
No 285
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.99 E-value=3.5 Score=38.36 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccCCChhHHHhCCCC
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESAIRPSILSKYGVH 134 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~~~~~l~~~~~V~ 134 (320)
+.||.+++++.. .+.|+.+ .+.+-+|=|+.+--+. --..|+++|..|.. +.++++. ++.++++.+++
T Consensus 145 edPVeiIn~~~e--~~~Fe~i---ed~~klIGyFk~~~s~---~yk~FeeAAe~F~p~IkFfAtf----d~~vAk~L~lK 212 (383)
T PF01216_consen 145 EDPVEIINNKHE--LKAFERI---EDDIKLIGYFKSEDSE---HYKEFEEAAEHFQPYIKFFATF----DKKVAKKLGLK 212 (383)
T ss_dssp SSSEEEE-SHHH--HHHHHH-----SS-EEEEE-SSTTSH---HHHHHHHHHHHCTTTSEEEEE-----SHHHHHHHT-S
T ss_pred ccchhhhcChhh--hhhhhhc---ccceeEEEEeCCCCcH---HHHHHHHHHHhhcCceeEEEEe----cchhhhhcCcc
Confidence 567888887763 2222322 4467788877774322 23478899999976 5566663 57899999997
Q ss_pred ccCeEEEEe--CceeEEEeC-CCCHHHHHHHHHHhhCCCCCCCCCCCh-hhhccCCCc-cccccc
Q 020846 135 GFPTLFLLN--SSMRVRYHG-SRTLDSLVAFYSDVTGMNTASLDKISP-DKVGKASNH-EKHNNT 194 (320)
Q Consensus 135 ~~Pti~l~~--g~~~~~~~G-~~~~~~l~~~i~~~~~~~~~~l~~~~~-~~~~~~~~~-~~~~f~ 194 (320)
.=.+-+|. -..++...| +.+.++|++||+++..+....++.+++ +..-..... -++.|.
T Consensus 213 -~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFa 276 (383)
T PF01216_consen 213 -LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFA 276 (383)
T ss_dssp -TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE-
T ss_pred -ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEe
Confidence 77777773 234444444 578999999999999999888887774 333333222 444554
No 286
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=89.77 E-value=0.28 Score=39.34 Aligned_cols=78 Identities=12% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHH-------------
Q 020846 158 SLVAFYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV------------- 224 (320)
Q Consensus 158 ~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~------------- 224 (320)
.|.+-+..+ | -..++..+++.++......++.+. +.-. -+-.+-.. +-+.++|+..|-
T Consensus 9 ~l~~rl~~~-g--~~~~~~~~~~~~~~~~~~~vl~~~-gdp~---r~~E~~D~--avvleELa~e~~~~~v~~akVDiD~ 79 (132)
T PRK11509 9 ALWQRMLAR-G--WTPVSESRLDDWLTQAPDGVVLLS-SDPK---RTPEVSDN--PVMIGELLREFPDYTWQVAIADLEQ 79 (132)
T ss_pred HHHHHHHHc-C--CCccccccHHHHHhCCCcEEEEeC-CCCC---cCCccccH--HHHHHHHHHHhcCCceEEEEEECCC
Confidence 344444443 3 334556788888866555333332 1111 01222223 456778888874
Q ss_pred ----HHHHHhhhchhHhhhhchhh
Q 020846 225 ----LLRLVYIFLPTLLIFAQFTW 244 (320)
Q Consensus 225 ----~~~~~i~~~Pti~~~~~~~~ 244 (320)
..+|+|.+.||+.+|.+|..
T Consensus 80 ~~~LA~~fgV~siPTLl~FkdGk~ 103 (132)
T PRK11509 80 SEAIGDRFGVFRFPATLVFTGGNY 103 (132)
T ss_pred CHHHHHHcCCccCCEEEEEECCEE
Confidence 28999999999999999973
No 287
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=89.74 E-value=0.027 Score=44.84 Aligned_cols=59 Identities=12% Similarity=-0.104 Sum_probs=35.3
Q ss_pred ChhhhccCCCcccccccCCCcCCcccCCCccccc----Ch-HHHHHHHHHHHH--------------------HHHHhhh
Q 020846 178 SPDKVGKASNHEKHNNTEEESCPFSWARSPENLL----QQ-ETYLALATAFVL--------------------LRLVYIF 232 (320)
Q Consensus 178 ~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~----~~-~~~~~la~~f~~--------------------~~~~i~~ 232 (320)
.++....+++.+++.|++ .||..|+.|. .. +.-..|...|+. ..+++.+
T Consensus 7 al~~Ak~~~KpVll~f~a------~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 7 AFEKARREDKPIFLSIGY------STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred HHHHHHHcCCeEEEEEcc------CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 344445555667888875 8999999881 11 222233333421 1356789
Q ss_pred chhHhhhhch
Q 020846 233 LPTLLIFAQF 242 (320)
Q Consensus 233 ~Pti~~~~~~ 242 (320)
+||+.++...
T Consensus 81 ~Pt~vfl~~~ 90 (124)
T cd02955 81 WPLNVFLTPD 90 (124)
T ss_pred CCEEEEECCC
Confidence 9999888443
No 288
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=89.33 E-value=0.1 Score=47.34 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-------------------------HHHHhhhchhHhhhhc
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-------------------------LRLVYIFLPTLLIFAQ 241 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-------------------------~~~~i~~~Pti~~~~~ 241 (320)
.+++.|++ +||+.|+.+ .|.+..++..|.. .+++|.+.||+.++.+
T Consensus 168 ~~Lv~F~A------swCp~C~~~--~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 168 SGLFFFFK------SDCPYCHQQ--APILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred eEEEEEEC------CCCccHHHH--hHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEEC
Confidence 37777775 999999999 9999999988731 4777788888877765
No 289
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.16 E-value=5.1 Score=30.10 Aligned_cols=74 Identities=9% Similarity=0.073 Sum_probs=50.0
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE-eC-ceeEEEeCCCCHH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL-NS-SMRVRYHGSRTLD 157 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~-~g-~~~~~~~G~~~~~ 157 (320)
.+.+.++.|..+. ..|+.+...++++++.-+. +.+...+.+ ...|++.+. ++ ...++|.|-..=.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdk-I~~~~~~~~-----------~~~P~~~i~~~~~~~gIrF~GiP~Gh 84 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSDK-ITLEEDNDD-----------ERKPSFSINRPGEDTGIRFAGIPMGH 84 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCc-eEEEEecCC-----------CCCCEEEEecCCCcccEEEEecCCch
Confidence 3455566666655 9999999999999887643 333222211 147999998 44 3358999988778
Q ss_pred HHHHHHHHh
Q 020846 158 SLVAFYSDV 166 (320)
Q Consensus 158 ~l~~~i~~~ 166 (320)
++..||...
T Consensus 85 Ef~Slilai 93 (94)
T cd02974 85 EFTSLVLAL 93 (94)
T ss_pred hHHHHHHHh
Confidence 888887643
No 290
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=88.49 E-value=0.12 Score=51.99 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=33.5
Q ss_pred CcccccccCCCcCCcccCCCcccccChHHH---HHHHHHHH-------------------HHHHHhhhchhHhhhhc
Q 020846 187 NHEKHNNTEEESCPFSWARSPENLLQQETY---LALATAFV-------------------LLRLVYIFLPTLLIFAQ 241 (320)
Q Consensus 187 ~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~---~~la~~f~-------------------~~~~~i~~~Pti~~~~~ 241 (320)
+.+++.|++ +||.+|+.+ .+.. .++...+. .++|++.++||+.+|.+
T Consensus 475 K~VlVdF~A------~WC~~Ck~~--e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~ 543 (571)
T PRK00293 475 KPVMLDLYA------DWCVACKEF--EKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDA 543 (571)
T ss_pred CcEEEEEEC------CcCHhHHHH--HHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECC
Confidence 347888885 999999998 4432 33333331 26799999999999863
No 291
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=88.48 E-value=3.8 Score=28.86 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=48.4
Q ss_pred EEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHh
Q 020846 87 LFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 87 ~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~ 166 (320)
.++.++|+.|++.+=.++...-.| ....+...+....+.+...-..+|++. .+|..+ .+...|.+++++.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~---~~~~v~~~~~~~~~~~~~p~~~vPvL~-~~g~~l------~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPY---ELVPVDPEEKRPEFLKLNPKGKVPVLV-DDGEVL------TDSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEE---EEEEEBTTSTSHHHHHHSTTSBSSEEE-ETTEEE------ESHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeE---EEeccCcccchhHHHhhcccccceEEE-ECCEEE------eCHHHHHHHHHHH
Confidence 478899999999986665543222 222332223345677777778999997 554322 2678899999988
Q ss_pred hCCC
Q 020846 167 TGMN 170 (320)
Q Consensus 167 ~~~~ 170 (320)
.+..
T Consensus 71 ~~~~ 74 (75)
T PF13417_consen 71 YPGP 74 (75)
T ss_dssp STSS
T ss_pred cCCC
Confidence 7643
No 292
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.46 E-value=1.1 Score=31.28 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.2
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 141 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l 141 (320)
+.|+.+||++|++.+-.+++..-.| ..+.++..+..+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~---e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV---ELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc---EEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 4578899999999987776554333 1222221223355666667778999854
No 293
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=88.42 E-value=9.1 Score=29.33 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=53.4
Q ss_pred CeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeC--------ceeEEEeCC
Q 020846 82 EYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS--------SMRVRYHGS 153 (320)
Q Consensus 82 ~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g--------~~~~~~~G~ 153 (320)
+.++|-|+..--+ .....|.++|+.+.+...+++.. +..+..++++. .|.+++|.+ .....|.|.
T Consensus 20 ~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~~k~e~~~~~~~~~ 92 (107)
T cd03068 20 DVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQSKYEPKSHVLNKK 92 (107)
T ss_pred CEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHhhhcCcceeeeecc
Confidence 6777777766433 45667889999987666666542 35777888886 566777722 235678887
Q ss_pred -CCHHH-HHHHHHHh
Q 020846 154 -RTLDS-LVAFYSDV 166 (320)
Q Consensus 154 -~~~~~-l~~~i~~~ 166 (320)
.+.++ |.+||..+
T Consensus 93 ~~~~~~~~~~f~~~~ 107 (107)
T cd03068 93 DSTSEDELKDFFKEH 107 (107)
T ss_pred ccchHHHHHHHHhcC
Confidence 56655 99999753
No 294
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=87.88 E-value=0.41 Score=39.52 Aligned_cols=29 Identities=7% Similarity=-0.085 Sum_probs=24.1
Q ss_pred CcccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 187 NHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 187 ~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
+..++.|++ +||++|++. .|...+++..|
T Consensus 51 ~~~lvnFWA------sWCppCr~e--~P~L~~l~~~~ 79 (153)
T TIGR02738 51 DYALVFFYQ------STCPYCHQF--APVLKRFSQQF 79 (153)
T ss_pred CCEEEEEEC------CCChhHHHH--HHHHHHHHHHc
Confidence 336777764 999999999 99999998876
No 295
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=87.74 E-value=4.1 Score=35.37 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=48.7
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCH-HHHhhHHHHHHHHHHcC-C------CCeEEEeccCCChhHHHh
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCP-FSRNFRPSFSVLSSLYS-S------IPHFAIEESAIRPSILSK 130 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~-~Ck~~~p~~~~la~~~~-~------~~~v~~~~~~~~~~l~~~ 130 (320)
+..-+|+.+++..+ .+++++|.|.=+.|| -|-.+...+..+.++.. . ++.|.+|-..+.++..++
T Consensus 52 l~d~~G~~~~~~~l-------~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 52 LTDQDGKPFTLKDL-------KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred eecCCCCEeecccc-------CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 34445666444444 789999999988898 79999888888877765 2 234444333344777788
Q ss_pred CCC-CccCeEE
Q 020846 131 YGV-HGFPTLF 140 (320)
Q Consensus 131 ~~V-~~~Pti~ 140 (320)
|.. ...|-+.
T Consensus 125 Y~~~~~~~~~~ 135 (207)
T COG1999 125 YAELNFDPRWI 135 (207)
T ss_pred HhcccCCCCee
Confidence 876 4444433
No 296
>PHA03075 glutaredoxin-like protein; Provisional
Probab=87.12 E-value=0.87 Score=35.34 Aligned_cols=30 Identities=17% Similarity=0.362 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCHHHHhhHHHHHHHHHHcC
Q 020846 82 EYVAVLFYASWCPFSRNFRPSFSVLSSLYS 111 (320)
Q Consensus 82 ~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~ 111 (320)
+.+++.|..|-|+-|+.....+.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 468999999999999999999999999984
No 297
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.96 E-value=0.2 Score=39.09 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=20.4
Q ss_pred CcccccccCCCcCCcccCCCcccccChHHHHHHHHH
Q 020846 187 NHEKHNNTEEESCPFSWARSPENLLQQETYLALATA 222 (320)
Q Consensus 187 ~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~ 222 (320)
+..++.|+. +||..|..+ .+.+..++..
T Consensus 21 k~~vl~F~~------~~C~~C~~~--~~~l~~~~~~ 48 (123)
T cd03011 21 KPVLVYFWA------TWCPVCRFT--SPTVNQLAAD 48 (123)
T ss_pred CEEEEEEEC------CcChhhhhh--ChHHHHHHhh
Confidence 346777764 899999998 7777666554
No 298
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=86.22 E-value=0.29 Score=36.38 Aligned_cols=34 Identities=6% Similarity=0.006 Sum_probs=28.4
Q ss_pred ccCCCcccccChHHHHHHHHHHH---------------HHHHHhhhchhHh
Q 020846 202 SWARSPENLLQQETYLALATAFV---------------LLRLVYIFLPTLL 237 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~---------------~~~~~i~~~Pti~ 237 (320)
|||..|+.+ .+.++.++..+- ..+|+|.+.||+.
T Consensus 22 ~~C~~C~~~--~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~v 70 (89)
T cd03026 22 LSCHNCPDV--VQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIF 70 (89)
T ss_pred CCCCCcHHH--HHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEE
Confidence 899999998 888899988761 2888999999984
No 299
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=83.38 E-value=0.089 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=21.5
Q ss_pred CCCcccccccCCCcCCcccCCCcccc----cChHHHHH-HHHHHH
Q 020846 185 ASNHEKHNNTEEESCPFSWARSPENL----LQQETYLA-LATAFV 224 (320)
Q Consensus 185 ~~~~~~~~f~~~~~~~~~wc~~c~~~----~~~~~~~~-la~~f~ 224 (320)
+++.+++.|+. .||..|+.| +..+.... +...|+
T Consensus 16 ~~kpvlv~f~a------~wC~~C~~l~~~~~~~~~v~~~~~~~fv 54 (82)
T PF13899_consen 16 EGKPVLVDFGA------DWCPPCKKLEREVFSDPEVQEALNKNFV 54 (82)
T ss_dssp HTSEEEEEEET------TTTHHHHHHHHHTTTSHHHHHHHHHCSE
T ss_pred cCCCEEEEEEC------CCCHhHHHHHHHHcCCHHHHHHHHCCEE
Confidence 44457788874 899999998 23334444 555554
No 300
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=82.95 E-value=2 Score=29.77 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=34.1
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC-CChhHHHhCCCCccCeEEEEe
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLN 143 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~V~~~Pti~l~~ 143 (320)
..|+.++|++|++.+-.++...-.|.. ..+...+.+ ..+++.+...-..+|++..-+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~-~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPL-VTVDLAAGEQRSPEFLAKNPAGTVPVLELDD 59 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceE-EEeecccCccCCHHHHhhCCCCCCCEEEeCC
Confidence 457889999999999887766433322 122221111 234455555666899987533
No 301
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=82.62 E-value=18 Score=32.37 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCeEEEEEEcCCCH-HHHhhHHHHHHHHHHcC---CC----CeEEEeccCCC--------------------------h
Q 020846 80 SHEYVAVLFYASWCP-FSRNFRPSFSVLSSLYS---SI----PHFAIEESAIR--------------------------P 125 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~-~Ck~~~p~~~~la~~~~---~~----~~v~~~~~~~~--------------------------~ 125 (320)
.++.++++|.=+.|| -|-.....+..+.++.. ++ ++|.+ |.+.+ +
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsv-DPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISV-DPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEe-CcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 578999999999998 47554444433333322 21 33443 33211 3
Q ss_pred hHHHhCCCCccC-------------eEEEE--e-CceeEEEeC-CCCHHHHHHHHHHhhC
Q 020846 126 SILSKYGVHGFP-------------TLFLL--N-SSMRVRYHG-SRTLDSLVAFYSDVTG 168 (320)
Q Consensus 126 ~l~~~~~V~~~P-------------ti~l~--~-g~~~~~~~G-~~~~~~l~~~i~~~~~ 168 (320)
++|++|.|.--+ ++++| + ....++|-| .++.+++.+-|.++..
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 688888876433 35555 4 356677777 5799999998887764
No 302
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=82.35 E-value=7.4 Score=30.26 Aligned_cols=42 Identities=19% Similarity=0.564 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHcCCC---CeEEEeccCCChhHHHhCCCCccCeEEEEeC
Q 020846 98 NFRPSFSVLSSLYSSI---PHFAIEESAIRPSILSKYGVHGFPTLFLLNS 144 (320)
Q Consensus 98 ~~~p~~~~la~~~~~~---~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g 144 (320)
.+.+....+.+..... ..+. .++.+.++|+|+.+||+++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~-----IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQ-----IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCccee-----EChhHHhhCCceEcCEEEEEcC
Confidence 5666666665554432 2333 3689999999999999999854
No 303
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=81.91 E-value=10 Score=36.26 Aligned_cols=89 Identities=17% Similarity=0.093 Sum_probs=62.2
Q ss_pred cCCCeEEEEEEcCCCHHHHhhH--HHHHHHHHHcCCCCeEEE--e-ccCCChhHHHhCCCCccCeEEEE--eCceeEEEe
Q 020846 79 NSHEYVAVLFYASWCPFSRNFR--PSFSVLSSLYSSIPHFAI--E-ESAIRPSILSKYGVHGFPTLFLL--NSSMRVRYH 151 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~--p~~~~la~~~~~~~~v~~--~-~~~~~~~l~~~~~V~~~Pti~l~--~g~~~~~~~ 151 (320)
+.++.++|.|-+.-....+.|. -.++......-...+|++ . +.....++..-|.+..+|.++++ .|.++....
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevit 95 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVIT 95 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEee
Confidence 4567788888888888888876 333333333222233333 2 12233567777899999999999 789999999
Q ss_pred CCCCHHHHHHHHHHhh
Q 020846 152 GSRTLDSLVAFYSDVT 167 (320)
Q Consensus 152 G~~~~~~l~~~i~~~~ 167 (320)
|..+.++|..-|.+..
T Consensus 96 g~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 96 GFVTADELASSIEKVW 111 (506)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999888763
No 304
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=81.09 E-value=1.1 Score=34.28 Aligned_cols=28 Identities=11% Similarity=-0.169 Sum_probs=22.4
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
.+++.|+. +||++|+.+ .|.++.++..+
T Consensus 23 ~vvl~F~~------~wC~~C~~~--~p~l~~~~~~~ 50 (114)
T cd02967 23 PTLLFFLS------PTCPVCKKL--LPVIRSIARAE 50 (114)
T ss_pred eEEEEEEC------CCCcchHhH--hHHHHHHHHHh
Confidence 46667764 999999999 88888887765
No 305
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=80.44 E-value=13 Score=30.05 Aligned_cols=75 Identities=9% Similarity=0.158 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCC----ccCeEEEEeCceeEEEeCCCCHHH
Q 020846 83 YVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVH----GFPTLFLLNSSMRVRYHGSRTLDS 158 (320)
Q Consensus 83 ~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~----~~Pti~l~~g~~~~~~~G~~~~~~ 158 (320)
.-++.|+.|.|+=|..-...++. .-..+.....++...+-+++||. +-=|.+ ++| .-..|-...+.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I~G---y~vEGHVPa~a 95 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV-ING---YYVEGHVPAEA 95 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------CCcEEEEeecCcHHHHHHhcCCChhhccccEEE-EcC---EEEeccCCHHH
Confidence 34778999999999887666551 12345555555667777888875 333333 355 34567789999
Q ss_pred HHHHHHHhh
Q 020846 159 LVAFYSDVT 167 (320)
Q Consensus 159 l~~~i~~~~ 167 (320)
+..++++.-
T Consensus 96 I~~ll~~~p 104 (149)
T COG3019 96 IARLLAEKP 104 (149)
T ss_pred HHHHHhCCC
Confidence 999988654
No 306
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.32 E-value=8.9 Score=38.94 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=51.4
Q ss_pred hHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHH---HHHHHHcC-CCCeEEEeccCCChhHHHhCC--------CCc
Q 020846 68 SLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSF---SVLSSLYS-SIPHFAIEESAIRPSILSKYG--------VHG 135 (320)
Q Consensus 68 ~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~---~~la~~~~-~~~~v~~~~~~~~~~l~~~~~--------V~~ 135 (320)
-|+++ ...++|++|-...+||--|.-|..+= .++|+..+ +.+-|.+ |-++-+++-+.|. --|
T Consensus 35 Af~~A-----~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKV-DREERPDvD~~Ym~~~q~~tG~GG 108 (667)
T COG1331 35 AFAKA-----KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKV-DREERPDVDSLYMNASQAITGQGG 108 (667)
T ss_pred HHHHH-----HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeE-ChhhccCHHHHHHHHHHHhccCCC
Confidence 38877 67899999999999999999996432 34444443 3445554 5666666555542 347
Q ss_pred cCeEEEE--eCceeE
Q 020846 136 FPTLFLL--NSSMRV 148 (320)
Q Consensus 136 ~Pti~l~--~g~~~~ 148 (320)
.|-.++. ++++..
T Consensus 109 WPLtVfLTPd~kPFf 123 (667)
T COG1331 109 WPLTVFLTPDGKPFF 123 (667)
T ss_pred CceeEEECCCCceee
Confidence 9998888 666543
No 307
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.17 E-value=6.2 Score=27.96 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=41.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC-CChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
+..|+.++|++|++.+-.+++..-.|. .+.+...+ ..+++.+..+-..+|+++.-+++.. -.+...|.+++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~---~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVI---LYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEE---EEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHHHHHHHH
Confidence 345777899999998877766543331 12221111 1234444445568998854322221 13567788887
Q ss_pred HHh
Q 020846 164 SDV 166 (320)
Q Consensus 164 ~~~ 166 (320)
.+.
T Consensus 74 ~~~ 76 (77)
T cd03041 74 FKT 76 (77)
T ss_pred HHh
Confidence 754
No 308
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=80.09 E-value=18 Score=25.32 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=42.7
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEe-CceeEEEeCCCCHHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLN-SSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~-g~~~~~~~G~~~~~~l~~~i 163 (320)
+..|+.+.|+.|++.+-.+++..-.|. .+.+ +.....++ ..-+-..+|++..=+ |.... -.+...|.+++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~---~~~~-~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~----l~eS~~I~~yL 72 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYE---VVEV-NPVSRKEI-KWSSYKKVPILRVESGGDGQQ----LVDSSVIISTL 72 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceE---EEEC-CchhHHHH-HHhCCCccCEEEECCCCCccE----EEcHHHHHHHH
Confidence 456888999999999977665533332 1111 21111223 334556899887531 11111 12567888898
Q ss_pred HHhhC
Q 020846 164 SDVTG 168 (320)
Q Consensus 164 ~~~~~ 168 (320)
++.+|
T Consensus 73 ~~~~~ 77 (77)
T cd03040 73 KTYLG 77 (77)
T ss_pred HHHcC
Confidence 88765
No 309
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=79.80 E-value=11 Score=32.38 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=32.5
Q ss_pred CChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 020846 123 IRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 123 ~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
.++.+.++|+|+.+|++++..+.......|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHh
Confidence 3689999999999999999844445566787777665555554
No 310
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=79.79 E-value=2.2 Score=35.81 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=33.1
Q ss_pred cEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCH-HHHhhHHHHHHHHHHcC
Q 020846 59 VGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCP-FSRNFRPSFSVLSSLYS 111 (320)
Q Consensus 59 v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~-~Ck~~~p~~~~la~~~~ 111 (320)
....+|+.++++++ .+++++|.|.=..|+ .|-.+...+.++.+.+.
T Consensus 37 L~d~~G~~~~~~~~-------~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~ 83 (174)
T PF02630_consen 37 LTDQDGKTVTLDDL-------KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLG 83 (174)
T ss_dssp EEETTSSEEEGGGG-------TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCEecHHHh-------CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhh
Confidence 34445667666555 789999999999996 79888877777776553
No 311
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=79.53 E-value=0.14 Score=44.67 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-----------------HHHHhhh
Q 020846 170 NTASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL-----------------LRLVYIF 232 (320)
Q Consensus 170 ~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~-----------------~~~~i~~ 232 (320)
+...++++|+..+++. .+++.|++ |||-+|+++ ++.|+.+|..=.. -||.++.
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~a------p~~psc~~~--~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta 94 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGA------PWCPSCSDL--IPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA 94 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcC------CCCccccch--HHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe
Confidence 3444667777766643 47788875 999999999 9999988765421 7888888
Q ss_pred chhHhhhhchhhhhhhh
Q 020846 233 LPTLLIFAQFTWRRLIR 249 (320)
Q Consensus 233 ~Pti~~~~~~~~~~~~~ 249 (320)
.|||.-...|..++|..
T Consensus 95 LptIYHvkDGeFrrysg 111 (248)
T KOG0913|consen 95 LPTIYHVKDGEFRRYSG 111 (248)
T ss_pred cceEEEeeccccccccC
Confidence 99998888887776643
No 312
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.43 E-value=1.8 Score=29.00 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=31.6
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh-hHHHhCCCCccCeEEE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP-SILSKYGVHGFPTLFL 141 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~-~l~~~~~V~~~Pti~l 141 (320)
..|+.++|+.|++.+-.++...-.|. ...+...+... .+.+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYE---LVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcE---EEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35788999999998888776643332 12221111111 2455567778998764
No 313
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=79.35 E-value=0.41 Score=37.68 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHH------------------------HHH
Q 020846 171 TASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAF------------------------VLL 226 (320)
Q Consensus 171 ~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f------------------------~~~ 226 (320)
...++.-+|++++.....++++|- ..+||- +- .+.|.++|..- +.+
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD----~ayPyG----eK--hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Lae 75 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFD----VAYPYG----EK--HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAE 75 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEE----ESS--C----HH--HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHH
T ss_pred eeeccceehhheeccCceEEEEEe----ccCCCc----ch--HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHH
Confidence 455777899999999888888873 323442 22 57778888433 128
Q ss_pred HHHh--hhchhHhhhhchhhhhhhhhccccccccchhhH--hhHH--HHHHHHhcccc
Q 020846 227 RLVY--IFLPTLLIFAQFTWRRLIRNLKLGSLLEHPRTY--LNRA--IQLFKTLNEPC 278 (320)
Q Consensus 227 ~~~i--~~~Pti~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~r~--~~~~~~l~~~~ 278 (320)
||+| ..||.+++|..+. ++|..| .+.+ ..+-.|+++++
T Consensus 76 ry~i~ke~fPv~~LF~~~~--------------~~pv~~p~~~~~t~~~l~~fvk~~t 119 (126)
T PF07912_consen 76 RYKIDKEDFPVIYLFVGDK--------------EEPVRYPFDGDVTADNLQRFVKSNT 119 (126)
T ss_dssp HTT-SCCC-SEEEEEESST--------------TSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred HhCCCcccCCEEEEecCCC--------------CCCccCCccCCccHHHHHHHHHhCC
Confidence 9999 5699999999766 778877 4443 33447777544
No 314
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=78.96 E-value=4.8 Score=32.23 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=32.8
Q ss_pred CChhHHHhCCCCccCeEEEEeCc------------eeEEEeCCCCHHHHHHHHHHh
Q 020846 123 IRPSILSKYGVHGFPTLFLLNSS------------MRVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 123 ~~~~l~~~~~V~~~Pti~l~~g~------------~~~~~~G~~~~~~l~~~i~~~ 166 (320)
.++.+.++|+|+.+|++++..+. ......|..+.+.-.+.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 36899999999999999999433 245666777777666666544
No 315
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.97 E-value=9.8 Score=35.77 Aligned_cols=82 Identities=21% Similarity=0.322 Sum_probs=61.8
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHH
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSL 159 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l 159 (320)
++..-+=-|++=.|..|-.....++-++-..+++.+..++. ...++-.+.-+|.++||+++ ||+.. -.|.++.++|
T Consensus 115 ~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG-a~Fq~Evear~IMaVPtvfl-nGe~f--g~GRmtleei 190 (520)
T COG3634 115 DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG-ALFQDEVEARNIMAVPTVFL-NGEEF--GQGRMTLEEI 190 (520)
T ss_pred CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc-hhhHhHHHhccceecceEEE-cchhh--cccceeHHHH
Confidence 45666777889999999999999999999899999998854 35566667779999999877 55432 2355677776
Q ss_pred HHHHHH
Q 020846 160 VAFYSD 165 (320)
Q Consensus 160 ~~~i~~ 165 (320)
..-|..
T Consensus 191 laki~~ 196 (520)
T COG3634 191 LAKIDT 196 (520)
T ss_pred HHHhcC
Confidence 665543
No 316
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=76.97 E-value=0.38 Score=47.55 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=41.1
Q ss_pred ChhhhccCCC--cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH---------------------HHHHHhhhch
Q 020846 178 SPDKVGKASN--HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV---------------------LLRLVYIFLP 234 (320)
Q Consensus 178 ~~~~~~~~~~--~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~---------------------~~~~~i~~~P 234 (320)
.+++.+.+.. .++++||+ -||-.||.+ ++-++.+....+. -+|+++.+-|
T Consensus 464 ~L~~~la~~~~~pVmlDfyA------dWCvtCK~~-e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYA------DWCVTCKEN-EKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred HHHHHHHhCCCCcEEEeeeh------hHHHHhHhh-hhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 4566666666 58999996 899999997 1222322222221 1899999999
Q ss_pred hHhhhhchh
Q 020846 235 TLLIFAQFT 243 (320)
Q Consensus 235 ti~~~~~~~ 243 (320)
++.+|..+.
T Consensus 537 ~~~ff~~~g 545 (569)
T COG4232 537 TYLFFGPQG 545 (569)
T ss_pred EEEEECCCC
Confidence 999998655
No 317
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=76.51 E-value=2.4 Score=34.66 Aligned_cols=53 Identities=17% Similarity=0.338 Sum_probs=33.1
Q ss_pred EEEEEcC------CCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCCh----hHHHhCCC----CccCeEEEEeC
Q 020846 85 AVLFYAS------WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRP----SILSKYGV----HGFPTLFLLNS 144 (320)
Q Consensus 85 lV~Fya~------wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~----~l~~~~~V----~~~Pti~l~~g 144 (320)
+|.|.++ +|++|++.+..|+.+. +. +...|.+.+. +|.+..+- ..+|.+++ +|
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~-----V~-~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI-~G 68 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFR-----VK-FDERDVSMDSGFREELRELLGAELKAVSLPRVFV-DG 68 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCC-----Cc-EEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE-CC
Confidence 4566777 9999999999998763 22 2223443443 34444454 57887765 55
No 318
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=76.01 E-value=5.3 Score=27.60 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=40.0
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSD 165 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~ 165 (320)
..|+.++|+.|++.+-.+++..-.|.. +.++-....+.+.+......+|++. .+| .. -.+...|.+++.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~~---~~v~~~~~~~~~~~~~p~~~vP~l~-~~~-~~-----l~es~aI~~yL~~ 71 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVEI---IDVDPDNPPEDLAELNPYGTVPTLV-DRD-LV-----LYESRIIMEYLDE 71 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccEE---EEcCCCCCCHHHHhhCCCCCCCEEE-ECC-EE-----EEcHHHHHHHHHh
Confidence 467889999999998777665433321 1121112234455555566889764 233 21 1355667777764
No 319
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=75.04 E-value=2.9 Score=31.77 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.1
Q ss_pred EEEEcCCCHHHHhhHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~l 106 (320)
..|+.++|+.|++....+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 568899999999998888764
No 320
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=74.92 E-value=15 Score=32.81 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=39.8
Q ss_pred hcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEE
Q 020846 78 KNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 78 ~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~ 142 (320)
..++|+.+++..+.|||.|-..+=.+-.+-.+|.+. .+.-...+. .-.-..+||+.+.
T Consensus 55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~------~d~~pn~Ptl~F~ 112 (249)
T PF06053_consen 55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP------YDNYPNTPTLIFN 112 (249)
T ss_pred CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc------ccCCCCCCeEEEe
Confidence 367899999999999999998865555555677655 444333221 1122478998887
No 321
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.24 E-value=9 Score=33.62 Aligned_cols=44 Identities=16% Similarity=0.318 Sum_probs=36.6
Q ss_pred hHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCCCC
Q 020846 126 SILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTA 172 (320)
Q Consensus 126 ~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~~~ 172 (320)
..+++.||+++||+++ .......|..+.+.+...|.+.++....
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhcccc
Confidence 5778899999999998 3345677999999999999999876643
No 322
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=73.42 E-value=3.3 Score=28.85 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccC-CChhHHHhCCCCccCeEE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESA-IRPSILSKYGVHGFPTLF 140 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~-~~~~l~~~~~V~~~Pti~ 140 (320)
..|+.++|+.|++.+-.+++..-.|.- ..+...+.+ ..+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~-~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNL-KEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEE-EEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 468899999999888777765443321 111111111 235566655666899985
No 323
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=72.68 E-value=1.8 Score=31.72 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=45.0
Q ss_pred EEcCCCHHHHhhHHHHHHHHHH-cCCCCeEEEeccCCChhHHHhCCCCccCeEEEE
Q 020846 88 FYASWCPFSRNFRPSFSVLSSL-YSSIPHFAIEESAIRPSILSKYGVHGFPTLFLL 142 (320)
Q Consensus 88 Fya~wC~~Ck~~~p~~~~la~~-~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~ 142 (320)
|-+..-+.+++....++.+.+. .++...+.++|..+++++++.++|-..||++-.
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik~ 58 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLIKE 58 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHHTT
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEeec
Confidence 4455556778888888888876 556788999999999999999999999997643
No 324
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=2 Score=30.66 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=38.8
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCC----------eEEEeccCCChhHHHhCCCCccCeEEEEeCceeE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIP----------HFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRV 148 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~----------~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~ 148 (320)
+.|+|.-||.|-....+++++.-.|..+. ++..-|....-+-.+..|--|+|.+..=+|+.+.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 67999999999988888877755553211 1111111111123456777899998876666554
No 325
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=70.81 E-value=7.5 Score=32.34 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC--CCeEEEecc--------CCCh
Q 020846 56 QDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEES--------AIRP 125 (320)
Q Consensus 56 ~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~--------~~~~ 125 (320)
+-.++.++|+.++|+++ .++++||.=-|+-|+.=..--..++.|.++|+. ...++. -| ..+.
T Consensus 16 df~~~d~~G~~v~l~~y-------rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaF-PCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQY-------RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAF-PCNQFGNQEPGSNE 87 (171)
T ss_pred eeEEecCCCCCccHHHh-------CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEe-ccccccCcCCCCcH
Confidence 44567789999999999 889999999999999888555688999999864 233332 22 1223
Q ss_pred h----HHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCCCCCCCCCChhhhccCCCc-ccccc
Q 020846 126 S----ILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMNTASLDKISPDKVGKASNH-EKHNN 193 (320)
Q Consensus 126 ~----l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~f 193 (320)
+ ++.+|+..- | +|. .++.+|. ..+-+-+|+++..+.....--.=||++|+-+.+. ++-+|
T Consensus 88 Ei~~f~~~r~~~~f-~---if~---KidVNG~-~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry 152 (171)
T KOG1651|consen 88 EILNFVKVRYGAEF-P---IFQ---KIDVNGD-NADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRF 152 (171)
T ss_pred HHHHHHHhccCCCC-c---cEe---EEecCCC-CCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEee
Confidence 3 345555432 2 331 1333443 5567888888777653332113478888766655 44444
No 326
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=70.73 E-value=2.7 Score=33.31 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=23.6
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL 225 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~ 225 (320)
.+++.|.. +||++|+.. .|.+.+++..+..
T Consensus 19 ~vll~F~a------twC~~C~~~--~p~l~~l~~~~~~ 48 (132)
T cd02964 19 TVGLYFSA------SWCPPCRAF--TPKLVEFYEKLKE 48 (132)
T ss_pred EEEEEEEC------CCCchHHHH--HHHHHHHHHHHhh
Confidence 36677754 999999998 8888888887754
No 327
>smart00594 UAS UAS domain.
Probab=70.17 E-value=0.7 Score=36.37 Aligned_cols=48 Identities=10% Similarity=-0.044 Sum_probs=30.3
Q ss_pred CcccccccCCCcCCcccCCCcccc----cChHH-HHHHHHHHH--------------HHHHHhhhchhHhhhh
Q 020846 187 NHEKHNNTEEESCPFSWARSPENL----LQQET-YLALATAFV--------------LLRLVYIFLPTLLIFA 240 (320)
Q Consensus 187 ~~~~~~f~~~~~~~~~wc~~c~~~----~~~~~-~~~la~~f~--------------~~~~~i~~~Pti~~~~ 240 (320)
+..++.++. +||..|+.+ +..+. -+.+...|+ ..+|++.+||++.++.
T Consensus 28 K~~lv~~~~------~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~ 94 (122)
T smart00594 28 RLLWLYLHS------QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD 94 (122)
T ss_pred CCEEEEEeC------CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEe
Confidence 345666654 888888887 22222 223333342 3889999999988884
No 328
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=70.11 E-value=4.5 Score=30.96 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.6
Q ss_pred EEEEcCCCHHHHhhHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~l 106 (320)
..|+.|+|+.|++....+++-
T Consensus 2 ~iy~~~~C~~crka~~~L~~~ 22 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR 22 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc
Confidence 568899999999998777654
No 329
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=68.30 E-value=89 Score=27.93 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=52.7
Q ss_pred hcCCCeEEEEEEcCC------CHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHh----CCCCc------------
Q 020846 78 KNSHEYVAVLFYASW------CPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSK----YGVHG------------ 135 (320)
Q Consensus 78 ~~~~~~vlV~Fya~w------C~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~----~~V~~------------ 135 (320)
.+=++++-|.+|.+- -..=+.+...+++.+..-++.+.+..+|.+.+++..++ +||..
T Consensus 21 ~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~ 100 (271)
T PF09822_consen 21 KSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQPVQIEIVDNGKAS 100 (271)
T ss_pred HhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCccceeeccccccc
Confidence 444567766666654 33344444455555555555788888888777766655 88876
Q ss_pred ----cCeEEEEeC--ceeEEEeC----CCCHHHHHHHHHHhhCC
Q 020846 136 ----FPTLFLLNS--SMRVRYHG----SRTLDSLVAFYSDVTGM 169 (320)
Q Consensus 136 ----~Pti~l~~g--~~~~~~~G----~~~~~~l~~~i~~~~~~ 169 (320)
++.+++-.| ...+.+.. ..-..+|...|.+.+..
T Consensus 101 ~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~~ 144 (271)
T PF09822_consen 101 IVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTSD 144 (271)
T ss_pred ceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhcc
Confidence 444444322 22223222 12356677777776655
No 330
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=8.2 Score=33.07 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=34.1
Q ss_pred hhHHHhCCCCccCeEEEE-eCceeEEEeC--CCCHHHHHHHHHHhh
Q 020846 125 PSILSKYGVHGFPTLFLL-NSSMRVRYHG--SRTLDSLVAFYSDVT 167 (320)
Q Consensus 125 ~~l~~~~~V~~~Pti~l~-~g~~~~~~~G--~~~~~~l~~~i~~~~ 167 (320)
..++++.++.+|||+.+- ||+....-.| ..+.+.+..++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 468899999999999999 7777666666 357788888887664
No 331
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=67.98 E-value=4.5 Score=31.25 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=39.3
Q ss_pred ccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC
Q 020846 58 IVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 58 ~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~ 112 (320)
.+..++|++++|++. .++++||.=-|+-|+.-. --..+++|.++|..
T Consensus 5 ~~~~~~G~~v~l~~y-------~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~ 51 (108)
T PF00255_consen 5 SAKDIDGKPVSLSKY-------KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD 51 (108)
T ss_dssp EEEBTTSSEEEGGGG-------TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG
T ss_pred eeeCCCCCEECHHHc-------CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc
Confidence 345678888888888 789999999999999888 55689999999863
No 332
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=67.33 E-value=1.3 Score=37.74 Aligned_cols=87 Identities=16% Similarity=0.022 Sum_probs=61.2
Q ss_pred HHHHhhCCCCCCCCCCChhhhccCCCcccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH---------------H
Q 020846 162 FYSDVTGMNTASLDKISPDKVGKASNHEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL---------------L 226 (320)
Q Consensus 162 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~---------------~ 226 (320)
|+.+--|.-...-++.+|-..+..+..++.-||- |-...||=| ..-.+.||..+.. .
T Consensus 60 ~~~~GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~------~~f~RCKim--DkhLe~LAk~h~eTrFikvnae~~PFlv~ 131 (211)
T KOG1672|consen 60 WLSKGHGEYEEVASEKDFFEEVKKSEKVVCHFYR------PEFFRCKIM--DKHLEILAKRHVETRFIKVNAEKAPFLVT 131 (211)
T ss_pred HHHcCCceEEEeccHHHHHHHhhcCceEEEEEEc------CCCcceehH--HHHHHHHHHhcccceEEEEecccCceeee
Confidence 3333333333333466777778777788888874 555789999 8889999988753 8
Q ss_pred HHHhhhchhHhhhhchhhh-hhhhhcccccc
Q 020846 227 RLVYIFLPTLLIFAQFTWR-RLIRNLKLGSL 256 (320)
Q Consensus 227 ~~~i~~~Pti~~~~~~~~~-~~~~~~~~~~~ 256 (320)
|.+|...|++.+|.+|.-+ ++++.--||+.
T Consensus 132 kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnk 162 (211)
T KOG1672|consen 132 KLNIKVLPTVALFKNGKTVDYVVGFTDLGNK 162 (211)
T ss_pred eeeeeEeeeEEEEEcCEEEEEEeeHhhcCCC
Confidence 9999999999999999755 33444445543
No 333
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=66.62 E-value=5.9 Score=30.56 Aligned_cols=21 Identities=10% Similarity=0.127 Sum_probs=17.7
Q ss_pred EEEEcCCCHHHHhhHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~l 106 (320)
..|+.++|+.|++....+++-
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH 22 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 468899999999999888764
No 334
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=65.80 E-value=7.3 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=17.8
Q ss_pred EEEEEcCCCHHHHhhHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~l 106 (320)
+..|+.++|+.|++....+++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999988777654
No 335
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=64.96 E-value=3.8 Score=32.17 Aligned_cols=30 Identities=7% Similarity=0.062 Sum_probs=23.6
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL 225 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~ 225 (320)
.+++.|+. +||.+|+.+ .|.+..+...+..
T Consensus 20 ~vll~Fwa------~wC~~C~~~--~p~l~~~~~~~~~ 49 (131)
T cd03009 20 TVGLYFSA------SWCPPCRAF--TPKLVEFYEKLKE 49 (131)
T ss_pred EEEEEEEC------CCChHHHHH--hHHHHHHHHHHHh
Confidence 46777764 999999998 8888888777653
No 336
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=63.44 E-value=13 Score=25.60 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~ 164 (320)
..++.++|++|++.+-.+....-.|. .+.+ +.+......+..+-..+|++.. +++.. -.+...|.+++.
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~---~~~~-~~~~~~~~~~~~~~~~vP~L~~-~~~~~-----l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVE---QIIL-QNDDEATPIRMIGAKQVPILEK-DDGSF-----MAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeE---EEEC-CCCchHHHHHhcCCCccCEEEe-CCCeE-----eehHHHHHHHHh
Confidence 35778999999998877765533332 1122 2222222233344456888743 32211 124456666664
No 337
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=62.60 E-value=1.2 Score=34.36 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=19.6
Q ss_pred HHHHhhhchhHhhhhchhhhhhhhhc
Q 020846 226 LRLVYIFLPTLLIFAQFTWRRLIRNL 251 (320)
Q Consensus 226 ~~~~i~~~Pti~~~~~~~~~~~~~~~ 251 (320)
.||++..+|++.+|..|.+...++.|
T Consensus 76 ~r~gv~~~PaLvf~R~g~~lG~i~gi 101 (107)
T PF07449_consen 76 ARFGVRRWPALVFFRDGRYLGAIEGI 101 (107)
T ss_dssp HHHT-TSSSEEEEEETTEEEEEEESS
T ss_pred HHhCCccCCeEEEEECCEEEEEecCe
Confidence 89999999999999998754444433
No 338
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.21 E-value=14 Score=33.91 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHhhC----CCCCCCCCCChhhhccCCCc---ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH-----
Q 020846 158 SLVAFYSDVTG----MNTASLDKISPDKVGKASNH---EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL----- 225 (320)
Q Consensus 158 ~l~~~i~~~~~----~~~~~l~~~~~~~~~~~~~~---~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~----- 225 (320)
+|.+-+.+..+ ..+..+++..|.+++..... .++.|++ ..|.--|.-|+.. .++|..+|+.+.-
T Consensus 25 ~ls~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA--~~~~~~C~lC~~~--~~Ef~iva~S~r~~~~~s 100 (331)
T KOG2603|consen 25 DLSNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTA--LQPHSQCQLCLQA--EEEFQIVANSWRYNSPFS 100 (331)
T ss_pred HHHHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccc--cCCCCcCchhhhH--HHHHHHHHHHhhccCCCC
Confidence 35666665554 44555688999999986554 4555553 4555689999999 8999999999842
Q ss_pred -------------------HHHHhhhchhHhhhh
Q 020846 226 -------------------LRLVYIFLPTLLIFA 240 (320)
Q Consensus 226 -------------------~~~~i~~~Pti~~~~ 240 (320)
+.+++..-|++..|.
T Consensus 101 n~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~ 134 (331)
T KOG2603|consen 101 NGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFS 134 (331)
T ss_pred CcceEEEEEEeccccHHHHHHhcccCCCeEEEeC
Confidence 788888889998883
No 339
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=61.06 E-value=9.7 Score=32.20 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=28.2
Q ss_pred hhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 125 PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 125 ~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
.+.+.+.||.++||+++ +|+ ....|..+.+.+.+.|
T Consensus 165 ~~~a~~~gv~G~Pt~vv-~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLGISGVPFFVF-NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCCCCcCCEEEE-CCe--EeecCCCCHHHHHHHh
Confidence 45677899999999988 554 3467899998888765
No 340
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=60.85 E-value=8.4 Score=29.93 Aligned_cols=20 Identities=10% Similarity=0.212 Sum_probs=17.4
Q ss_pred EEEEcCCCHHHHhhHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSV 105 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~ 105 (320)
..|+.++|+.|++....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999999988876
No 341
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=60.78 E-value=23 Score=25.83 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=32.0
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEE
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFL 141 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l 141 (320)
+..|+.+.|++|++.+-.++...-.|. .+.++.......+.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl~~~---~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNIPHE---VININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCCCe---EEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455778889999998776665533332 122211112234555556678899874
No 342
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=58.03 E-value=87 Score=24.35 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=51.7
Q ss_pred EEEEEE-cCCCHHHHhhHHHHHHHHHHcCC--CCeEEEeccCCCh-----------hHHHhCCCCcc-CeEEEE--eCce
Q 020846 84 VAVLFY-ASWCPFSRNFRPSFSVLSSLYSS--IPHFAIEESAIRP-----------SILSKYGVHGF-PTLFLL--NSSM 146 (320)
Q Consensus 84 vlV~Fy-a~wC~~Ck~~~p~~~~la~~~~~--~~~v~~~~~~~~~-----------~l~~~~~V~~~-Pti~l~--~g~~ 146 (320)
++|.|- .+-.+.=+.....+++-...+.. ++.+.+.+..... .+.++|++..- -+++++ +|+.
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~v 91 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGV 91 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcE
Confidence 334343 33445555556666664444443 4445554443333 78888986632 334555 7999
Q ss_pred eEEEeCCCCHHHHHHHHHHh
Q 020846 147 RVRYHGSRTLDSLVAFYSDV 166 (320)
Q Consensus 147 ~~~~~G~~~~~~l~~~i~~~ 166 (320)
..++..+.+.++|-+.|...
T Consensus 92 K~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 92 KLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEecCCCCCHHHHHHHHhCC
Confidence 99999999999999988643
No 343
>PRK12559 transcriptional regulator Spx; Provisional
Probab=55.84 E-value=14 Score=29.49 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.7
Q ss_pred EEEEEcCCCHHHHhhHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~l 106 (320)
+..|+.++|+.|++....+++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4578899999999988776654
No 344
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=55.84 E-value=14 Score=28.53 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.9
Q ss_pred EEEEEcCCCHHHHhhHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~l 106 (320)
+..|+.++|+.|++....+++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3467889999999998888764
No 345
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=54.77 E-value=6.8 Score=30.47 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=22.0
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
.+++.|+. +||..|+.+ .|.+..++..+
T Consensus 27 ~vvv~F~a------~~C~~C~~~--~~~l~~l~~~~ 54 (127)
T cd03010 27 PYLLNVWA------SWCAPCREE--HPVLMALARQG 54 (127)
T ss_pred EEEEEEEc------CcCHHHHHH--HHHHHHHHHhc
Confidence 36777764 999999998 88888877654
No 346
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=54.68 E-value=11 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe--cc-CCChhHHHhCCCCccCeEEE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE--ES-AIRPSILSKYGVHGFPTLFL 141 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~--~~-~~~~~l~~~~~V~~~Pti~l 141 (320)
..|+.+.|+.|++.+-.++...-.|. .+.++ +. .....+.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYE---WVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcE---EEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 35788999999998877766543332 11221 11 12234444444567898864
No 347
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=53.19 E-value=23 Score=31.98 Aligned_cols=83 Identities=19% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEe---cc--CCChhHHHhCCCC-ccCeEEEE-eCceeEEEeC
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIE---ES--AIRPSILSKYGVH-GFPTLFLL-NSSMRVRYHG 152 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~---~~--~~~~~l~~~~~V~-~~Pti~l~-~g~~~~~~~G 152 (320)
......|.-|++-|..=..+.|.-+.. .-.+++++= +. +.++.+..+|... +.|++..+ -|. ...|.+
T Consensus 73 ~~~t~~IR~Y~sDCn~le~v~pAa~~~----g~kv~lGiw~tdd~~~~~~~til~ay~~~~~~d~v~~v~VGn-Eal~r~ 147 (305)
T COG5309 73 ASYTHSIRTYGSDCNTLENVLPAAEAS----GFKVFLGIWPTDDIHDAVEKTILSAYLPYNGWDDVTTVTVGN-EALNRN 147 (305)
T ss_pred ccCCceEEEeeccchhhhhhHHHHHhc----CceEEEEEeeccchhhhHHHHHHHHHhccCCCCceEEEEech-hhhhcC
Confidence 344558999998777655555544333 212333331 11 1233566666554 67777666 333 345778
Q ss_pred CCCHHHHHHHHHHhh
Q 020846 153 SRTLDSLVAFYSDVT 167 (320)
Q Consensus 153 ~~~~~~l~~~i~~~~ 167 (320)
..+.++|.+.|.+.-
T Consensus 148 ~~tasql~~~I~~vr 162 (305)
T COG5309 148 DLTASQLIEYIDDVR 162 (305)
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999998763
No 348
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=51.99 E-value=16 Score=30.48 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=26.3
Q ss_pred hhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 125 PSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 125 ~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
...+.+.||.++||+++ +|+ .+.|....+.+.+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv-~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV-DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE-CCe---eecccccHHHHHHHh
Confidence 45677899999999987 653 556877777776654
No 349
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=8.3 Score=32.15 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=37.6
Q ss_pred EeCcchhHHHHHhHHhhcCCCeEEEEEEc-CCCHHHH----hhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhC
Q 020846 62 IEGDEVSLQMALNMVHKNSHEYVAVLFYA-SWCPFSR----NFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKY 131 (320)
Q Consensus 62 l~~~~~~f~~~~~~~~~~~~~~vlV~Fya-~wC~~Ck----~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~ 131 (320)
-+++.+++.+. ..+++++++||- .--|-|- .++..|+++.+.+..+.-+..++...++.+..++
T Consensus 77 edg~sisLkki------t~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKq 145 (211)
T KOG0855|consen 77 EDGKSISLKKI------TGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQ 145 (211)
T ss_pred CCCCeeeeeee------cCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhc
Confidence 35566556555 456688899982 2223343 3567777777766656656555554444444443
No 350
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.55 E-value=23 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=25.3
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCC
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSS 112 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~ 112 (320)
+..|+-+.||.|-...+.++++.+++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~ 30 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGG 30 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCC
Confidence 6689999999999999999999999843
No 351
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=51.24 E-value=9.4 Score=31.16 Aligned_cols=29 Identities=0% Similarity=-0.262 Sum_probs=22.5
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
.+++.|. + +||..|++. .|...++...+.
T Consensus 27 ~vlL~Fw----A--sWCppCr~e--~P~L~~ly~~~~ 55 (146)
T cd03008 27 VLLLFFG----A--VVSPQCQLF--APKLKDFFVRLT 55 (146)
T ss_pred EEEEEEE----C--CCChhHHHH--HHHHHHHHHHHH
Confidence 3666664 5 999999999 888888777654
No 352
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=50.92 E-value=12 Score=27.60 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=21.4
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
..++.|+. +||.+|+.. .+.+..+...|.
T Consensus 21 ~~ll~f~~------~~C~~C~~~--~~~l~~~~~~~~ 49 (116)
T cd02966 21 VVLVNFWA------SWCPPCRAE--MPELEALAKEYK 49 (116)
T ss_pred EEEEEeec------ccChhHHHH--hHHHHHHHHHhC
Confidence 36666664 899999998 777777776653
No 353
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=48.73 E-value=6.1 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=21.9
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
.++.|. + +||.+|++. .|...++...|.
T Consensus 4 ~ll~fw----a--~~c~~c~~~--~~~l~~l~~~~~ 31 (95)
T PF13905_consen 4 VLLYFW----A--SWCPPCKKE--LPKLKELYKKYK 31 (95)
T ss_dssp EEEEEE-------TTSHHHHHH--HHHHHHHHHHHT
T ss_pred EEEEEE----C--CCCHHHHHH--HHHHHHHHHHhC
Confidence 455565 3 899999998 888888888877
No 354
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=48.11 E-value=9 Score=32.52 Aligned_cols=26 Identities=8% Similarity=-0.075 Sum_probs=21.8
Q ss_pred cccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 190 KHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 190 ~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
++.|+ + .||.+|++. .|...+++..|
T Consensus 73 lV~Fw----a--swCp~C~~e--~P~L~~l~~~~ 98 (181)
T PRK13728 73 VVLFM----Q--GHCPYCHQF--DPVLKQLAQQY 98 (181)
T ss_pred EEEEE----C--CCCHhHHHH--HHHHHHHHHHc
Confidence 55565 4 999999999 99999999886
No 355
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=47.12 E-value=9.7 Score=27.76 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.2
Q ss_pred ccCCCcccccChHHHHHHHHHHH
Q 020846 202 SWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
+||++|+.+ .|....++..+.
T Consensus 42 ~~C~~C~~~--~~~l~~~~~~~~ 62 (127)
T COG0526 42 PWCPPCRAE--APLLEELAEEYG 62 (127)
T ss_pred CcCHHHHhh--chhHHHHHHHhc
Confidence 999999999 999999998874
No 356
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=46.04 E-value=11 Score=37.45 Aligned_cols=28 Identities=11% Similarity=-0.154 Sum_probs=22.7
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
.+++.|. + +||.+|+.+ .|.+.+++..+
T Consensus 58 pVvV~FW----A--TWCppCk~e--mP~L~eL~~e~ 85 (521)
T PRK14018 58 PTLIKFW----A--SWCPLCLSE--LGETEKWAQDA 85 (521)
T ss_pred EEEEEEE----c--CCCHHHHHH--HHHHHHHHHHh
Confidence 3677776 4 999999999 88888887765
No 357
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=45.40 E-value=25 Score=28.06 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=16.4
Q ss_pred EEEEEcCCCHHHHhhHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSV 105 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~ 105 (320)
+..|+.++|+.|++....+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346788999999998766654
No 358
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=45.24 E-value=5.8 Score=31.62 Aligned_cols=27 Identities=7% Similarity=-0.201 Sum_probs=20.5
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
.++.|++ |+|.+|.++ .+....+...+
T Consensus 8 ~i~~f~D------~~Cp~C~~~--~~~l~~~~~~~ 34 (154)
T cd03023 8 TIVEFFD------YNCGYCKKL--APELEKLLKED 34 (154)
T ss_pred EEEEEEC------CCChhHHHh--hHHHHHHHHHC
Confidence 5666766 899999999 78777766544
No 359
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=43.73 E-value=36 Score=25.91 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc--CCChhHHHhCCCC--ccCeEEE
Q 020846 88 FYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES--AIRPSILSKYGVH--GFPTLFL 141 (320)
Q Consensus 88 Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~--~~~~~l~~~~~V~--~~Pti~l 141 (320)
||-.+|+.|......+... .....+..++. +...++.+.++++ ..-+.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 55 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLH 55 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeE
Confidence 7899999999999888777 22223333333 2344455667765 3444444
No 360
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=42.21 E-value=12 Score=31.24 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=19.9
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALAT 221 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~ 221 (320)
.+++.|+. .||.+|+++ .|.+.+++.
T Consensus 65 ~vll~F~a------~wC~~C~~~--~p~l~~l~~ 90 (173)
T TIGR00385 65 PVLLNVWA------SWCPPCRAE--HPYLNELAK 90 (173)
T ss_pred EEEEEEEC------CcCHHHHHH--HHHHHHHHH
Confidence 36777763 899999998 788777654
No 361
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=41.97 E-value=1.6e+02 Score=22.78 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCCCC--eEEEeccCCChhHHH----hCCCC-ccCeEEEEe---C-ceeE
Q 020846 80 SHEYVAVLFYASWCPFSRNFRPSFSVLSSLYSSIP--HFAIEESAIRPSILS----KYGVH-GFPTLFLLN---S-SMRV 148 (320)
Q Consensus 80 ~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~~~--~v~~~~~~~~~~l~~----~~~V~-~~Pti~l~~---g-~~~~ 148 (320)
-++..+|.|--+-.+.-.++.+.+.++|+++.... .+.-+|.++.+-+.. .|+|. .-|.|=+.+ . ..=.
T Consensus 19 ~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 19 LDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred cCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 35778899999999999999999999999987533 333347777765543 45554 358887762 2 2222
Q ss_pred EEeCC---CCHHHHHHHHHHhh
Q 020846 149 RYHGS---RTLDSLVAFYSDVT 167 (320)
Q Consensus 149 ~~~G~---~~~~~l~~~i~~~~ 167 (320)
+..+. .+.++|.+||++.+
T Consensus 99 ~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ecccccccCcHHHHHHHHHhhC
Confidence 33333 58899999998753
No 362
>PF13728 TraF: F plasmid transfer operon protein
Probab=41.95 E-value=8.2 Score=33.69 Aligned_cols=28 Identities=7% Similarity=-0.182 Sum_probs=23.6
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFV 224 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~ 224 (320)
.++.||. +.|..|+.+ .|+...++..|-
T Consensus 123 gL~~F~~------~~C~~C~~~--~pil~~~~~~yg 150 (215)
T PF13728_consen 123 GLFFFYR------SDCPYCQQQ--APILQQFADKYG 150 (215)
T ss_pred EEEEEEc------CCCchhHHH--HHHHHHHHHHhC
Confidence 5666775 678999999 999999999983
No 363
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=39.94 E-value=16 Score=28.36 Aligned_cols=33 Identities=6% Similarity=-0.262 Sum_probs=25.5
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRL 228 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~~~~ 228 (320)
.+++.|+ + .||..|... .|.+.++...|....+
T Consensus 25 ~vvl~F~----a--~~C~~C~~~--~p~l~~l~~~~~~~~~ 57 (126)
T cd03012 25 VVLLDFW----T--YCCINCLHT--LPYLTDLEQKYKDDGL 57 (126)
T ss_pred EEEEEEE----C--CCCccHHHH--HHHHHHHHHHcCcCCe
Confidence 3666665 4 899999998 8899999988875433
No 364
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=39.68 E-value=54 Score=28.99 Aligned_cols=33 Identities=12% Similarity=0.076 Sum_probs=28.9
Q ss_pred cCCCeEEEEEEcCCCHHHHhhHHHHHHHHHHcC
Q 020846 79 NSHEYVAVLFYASWCPFSRNFRPSFSVLSSLYS 111 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~ 111 (320)
..+.++||-+-..+|..|..-+..++.|..++.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~ 56 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLE 56 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999987653
No 365
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=39.13 E-value=2e+02 Score=25.13 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=41.1
Q ss_pred CCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHHHHhhCCC
Q 020846 92 WCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFYSDVTGMN 170 (320)
Q Consensus 92 wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i~~~~~~~ 170 (320)
.|+.|+++.-.+. .+.. ...+..+|....++-.....-.+=|-++.|++ .+..+.+.|+++|++.++..
T Consensus 20 dcpf~qr~~m~L~---~k~~-~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~------~~~tDs~~Ie~~Lee~l~~p 88 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGV-PFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE------KWVTDSDKIEEFLEEKLPPP 88 (221)
T ss_pred CChhHHHHHHHHH---HcCC-CceEEEeecCCCcHHHHhhCCCCCCCeEEeCC------ceeccHHHHHHHHHHhcCCC
Confidence 4999998876666 2211 34555556555555554433333333444444 22457889999999998754
No 366
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=36.71 E-value=12 Score=33.76 Aligned_cols=48 Identities=19% Similarity=0.050 Sum_probs=35.7
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH--------------HHHHhhhchhHhhhhchhh
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL--------------LRLVYIFLPTLLIFAQFTW 244 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~--------------~~~~i~~~Pti~~~~~~~~ 244 (320)
+++-+|. |-+..|+-| ...+..||..|.. .+|.+...|||++|.+|..
T Consensus 149 VVVHiY~------~~~~~C~~m--n~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l 210 (265)
T PF02114_consen 149 VVVHIYE------PGFPRCEIM--NSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDL 210 (265)
T ss_dssp EEEEEE-------TTSCCHHHH--HHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEE
T ss_pred EEEEEEe------CCCchHHHH--HHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEE
Confidence 5566665 556789999 9999999999942 5788889999999999863
No 367
>PLN02412 probable glutathione peroxidase
Probab=36.43 E-value=17 Score=30.12 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=29.5
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHHHHHHhhhchh
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLPT 235 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~Pt 235 (320)
+++.|. + +||+.|+.. .+.+.++...|....+.|.+.+.
T Consensus 32 vlv~f~----a--~~C~~c~~e--~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 32 LLIVNV----A--SKCGLTDSN--YKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEEe----C--CCCCChHHH--HHHHHHHHHHHhhCCcEEEEecc
Confidence 555564 3 899999976 78899999999876666666553
No 368
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=36.34 E-value=15 Score=30.98 Aligned_cols=26 Identities=12% Similarity=0.081 Sum_probs=19.6
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALAT 221 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~ 221 (320)
.+++.|. + .||.+|++. .|.+.+++.
T Consensus 70 ~vvv~Fw----a--twC~~C~~e--~p~l~~l~~ 95 (185)
T PRK15412 70 PVLLNVW----A--TWCPTCRAE--HQYLNQLSA 95 (185)
T ss_pred EEEEEEE----C--CCCHHHHHH--HHHHHHHHH
Confidence 3666775 4 999999998 787777653
No 369
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=34.39 E-value=22 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=23.3
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAFVL 225 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~ 225 (320)
.++.|+. +||..|+.. .+.+..+...|..
T Consensus 64 ~~l~f~a------~~C~~C~~~--~~~l~~~~~~~~~ 92 (173)
T PRK03147 64 VFLNFWG------TWCKPCEKE--MPYMNELYPKYKE 92 (173)
T ss_pred EEEEEEC------CcCHHHHHH--HHHHHHHHHHhhc
Confidence 6666654 899999998 8888888888764
No 370
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=34.35 E-value=2.7e+02 Score=23.10 Aligned_cols=117 Identities=8% Similarity=0.024 Sum_probs=65.2
Q ss_pred CCcccccCCCCCccEEEeCcchhHHHHHhHHhhcCCCeEEEEEEcCCCHHHHhhHHHHHHHHHH-cCC--CCeEEEeccC
Q 020846 46 SFCPISCNDFQDIVGVIEGDEVSLQMALNMVHKNSHEYVAVLFYASWCPFSRNFRPSFSVLSSL-YSS--IPHFAIEESA 122 (320)
Q Consensus 46 ~~~~~~~~~~~~~v~~l~~~~~~f~~~~~~~~~~~~~~vlV~Fya~wC~~Ck~~~p~~~~la~~-~~~--~~~v~~~~~~ 122 (320)
|+..|+..-.+..-..++++.+++..+- .. .-.+|+-+|..-|-.-..=..-.|.++.+.+. |+. .....++|.|
T Consensus 4 ~~~~p~V~v~d~Gel~l~~~~~~y~~W~-s~-~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 4 GQPVPPVTVADKGELILNGDKISYQPWN-SA-QLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred CCcCCceEecCCceEEEcCCcccccccC-cc-ccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 3333433333444466777776666661 11 12456666666665555555567788888765 654 2344444443
Q ss_pred CC-----------------------------hhHHHhCCCCcc-CeEEEE--eCceeEEEeCCCCHHHHHHHHH
Q 020846 123 IR-----------------------------PSILSKYGVHGF-PTLFLL--NSSMRVRYHGSRTLDSLVAFYS 164 (320)
Q Consensus 123 ~~-----------------------------~~l~~~~~V~~~-Pti~l~--~g~~~~~~~G~~~~~~l~~~i~ 164 (320)
+- ..+...++...- -++++. +|...+...|..+.+++.++|.
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 21 122233333322 335555 5777788889999999988875
No 371
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=34.21 E-value=19 Score=29.10 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=24.1
Q ss_pred ccCCCcccccChHHHHHHHHHHHHHHHHhhhch
Q 020846 202 SWARSPENLLQQETYLALATAFVLLRLVYIFLP 234 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~P 234 (320)
+||..|+.- -|...++...|....+.+.+++
T Consensus 32 s~C~~c~~~--~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 32 SECGFTDQN--YRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred CCCCchhhh--HHHHHHHHHHHhhCCeEEEEEe
Confidence 999999887 7888888888876555555554
No 372
>PTZ00256 glutathione peroxidase; Provisional
Probab=34.17 E-value=19 Score=30.29 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=25.3
Q ss_pred ccCCCcccccChHHHHHHHHHHHHHHHHhhhch
Q 020846 202 SWARSPENLLQQETYLALATAFVLLRLVYIFLP 234 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~P 234 (320)
.||+.|+.- .|.+.++...|....+.|.+++
T Consensus 51 twCp~C~~e--~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 51 CKCGLTSDH--YTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCCCchHHH--HHHHHHHHHHHhhCCcEEEEEe
Confidence 899999987 8889999999876666666555
No 373
>PTZ00056 glutathione peroxidase; Provisional
Probab=33.28 E-value=18 Score=31.03 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=25.3
Q ss_pred ccCCCcccccChHHHHHHHHHHHHHHHHhhhch
Q 020846 202 SWARSPENLLQQETYLALATAFVLLRLVYIFLP 234 (320)
Q Consensus 202 ~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~P 234 (320)
.||+.|.+. .|...++...|....+.|.+++
T Consensus 49 swC~~C~~e--~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 49 SKCGLTKKH--VDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred CCCCChHHH--HHHHHHHHHHHhcCceEEEEec
Confidence 899999887 7889999999876666666665
No 374
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=32.45 E-value=57 Score=25.22 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=17.1
Q ss_pred EEEEEcCCCHHHHhhHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~l 106 (320)
+..|..|.|+.|++....+++-
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~ 23 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA 23 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 3568899999999988766543
No 375
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=32.13 E-value=52 Score=22.65 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=39.0
Q ss_pred EEEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc-CCChhHHHhCCCCccCeEEEEeCceeEEEeCCCCHHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES-AIRPSILSKYGVHGFPTLFLLNSSMRVRYHGSRTLDSLVAFY 163 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~-~~~~~l~~~~~V~~~Pti~l~~g~~~~~~~G~~~~~~l~~~i 163 (320)
+..|+.+.|+.|++..-.++...-.|.. ..+..... ...+.+.+......+|++.. +| .. -.+...|.+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~-~~~~~~~~~~~~~~~~~~~P~~~vP~l~~-~g-~~-----l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYEL-VPVDLTKGEHKSPEHLARNPFGQIPALED-GD-LK-----LFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEE-EEeCccccccCCHHHHhhCCCCCCCEEEE-CC-EE-----EEcHHHHHHHH
Confidence 4456677799999988777665433321 11111111 11244555566678998742 33 11 13456677766
Q ss_pred HH
Q 020846 164 SD 165 (320)
Q Consensus 164 ~~ 165 (320)
.+
T Consensus 74 ~~ 75 (76)
T cd03053 74 AE 75 (76)
T ss_pred hh
Confidence 53
No 376
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=31.90 E-value=18 Score=32.09 Aligned_cols=39 Identities=10% Similarity=-0.056 Sum_probs=29.6
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHHHHHHhhhch
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLP 234 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~P 234 (320)
.+++.|. + .||..|... .|.+.+|...|....+.|.+++
T Consensus 101 ~vvl~Fw----A--swCp~c~~e--~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 101 VLLIVNV----A--SKCGLTSSN--YSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred eEEEEEE----c--CCCcchHHH--HHHHHHHHHHHhcCCcEEEEEe
Confidence 3566665 4 999999988 8889999998876656665555
No 377
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=30.42 E-value=47 Score=27.67 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=17.1
Q ss_pred hhHHHhCCCCccCeEEEEeCc
Q 020846 125 PSILSKYGVHGFPTLFLLNSS 145 (320)
Q Consensus 125 ~~l~~~~~V~~~Pti~l~~g~ 145 (320)
.+.+.+.||.++||+++.++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~ 179 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCC
Confidence 456778999999999999543
No 378
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=30.06 E-value=1.1e+02 Score=20.78 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=30.7
Q ss_pred EEEEcCCCHHHHhhHHHHHH--HHHHcCCCCeEEEeccCCChhHHHhCCCCccCeEEEEeC
Q 020846 86 VLFYASWCPFSRNFRPSFSV--LSSLYSSIPHFAIEESAIRPSILSKYGVHGFPTLFLLNS 144 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~--la~~~~~~~~v~~~~~~~~~~l~~~~~V~~~Pti~l~~g 144 (320)
..|+.+.|+.|.+.+-.++. ..-.| ..+.++.....+++.+......+|++..-+|
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~---~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g 59 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDV---ELVLVNPWSDDESLLAVNPLGKIPALVLDDG 59 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCc---EEEEcCcccCChHHHHhCCCCCCCEEEECCC
Confidence 35678889999988766655 22112 1222222222344555555667887764333
No 379
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=29.57 E-value=86 Score=25.21 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=8.6
Q ss_pred CCHHHHhhHHHH
Q 020846 92 WCPFSRNFRPSF 103 (320)
Q Consensus 92 wC~~Ck~~~p~~ 103 (320)
=||+||++.-+|
T Consensus 87 PCG~CRQ~i~Ef 98 (134)
T COG0295 87 PCGACRQVLAEF 98 (134)
T ss_pred CcHHHHHHHHHh
Confidence 388898876544
No 380
>PRK11372 lysozyme inhibitor; Provisional
Probab=29.27 E-value=42 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=11.5
Q ss_pred CCCcchhHHHHHHHHHHHh
Q 020846 1 MGLRFWETGILMLVLWGRL 19 (320)
Q Consensus 1 m~~r~~~~~~llll~~~~~ 19 (320)
|+|+.+.++++++++.||.
T Consensus 1 ~~mk~ll~~~~~~lL~gCs 19 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCS 19 (109)
T ss_pred CchHHHHHHHHHHHHHHhc
Confidence 7888766555555544444
No 381
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=28.73 E-value=48 Score=23.08 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=30.4
Q ss_pred EEEEcCCCHHHHhhHHHHHHHHHHcCCCCeEEEecc---CCChhHHHhCCCCccCeEE
Q 020846 86 VLFYASWCPFSRNFRPSFSVLSSLYSSIPHFAIEES---AIRPSILSKYGVHGFPTLF 140 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~---~~~~~l~~~~~V~~~Pti~ 140 (320)
..|+.+.|+.|++.+-.+++..-.| ..+.++.. ...+++.+-..-..+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~---e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRC---EEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCC---EEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 4678889999988876555553333 12222211 1223455555666899885
No 382
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=28.70 E-value=32 Score=29.12 Aligned_cols=26 Identities=15% Similarity=-0.052 Sum_probs=19.2
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATA 222 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~ 222 (320)
+++.|+ + +||..|++. .|....+...
T Consensus 77 vvl~F~----a--twCp~C~~~--lp~l~~~~~~ 102 (189)
T TIGR02661 77 TLLMFT----A--PSCPVCDKL--FPIIKSIARA 102 (189)
T ss_pred EEEEEE----C--CCChhHHHH--HHHHHHHHHh
Confidence 566665 4 999999998 7777776543
No 383
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=27.08 E-value=26 Score=29.71 Aligned_cols=40 Identities=15% Similarity=-0.011 Sum_probs=30.6
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHHHHHHhhhchhH
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYIFLPTL 236 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~~~~~i~~~Pti 236 (320)
.+++.|. + .||+.|++ -+.+++|...|....+.|.++|.-
T Consensus 27 vvLVvf~----A--S~C~~~~q---~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 27 VLLIVNV----A--SKCGLTPQ---YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred EEEEEEE----e--CCCCCcHH---HHHHHHHHHHHhhCCeEEEEeecc
Confidence 3556664 4 89999976 468889999998777888888864
No 384
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.78 E-value=1.2e+02 Score=23.07 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=29.4
Q ss_pred cCCCHHHHhhHHHHHHHHHHcCCCCeEEEeccCCChhHHHhCC-CCccCeE-EEE-eC
Q 020846 90 ASWCPFSRNFRPSFSVLSSLYSSIPHFAIEESAIRPSILSKYG-VHGFPTL-FLL-NS 144 (320)
Q Consensus 90 a~wC~~Ck~~~p~~~~la~~~~~~~~v~~~~~~~~~~l~~~~~-V~~~Pti-~l~-~g 144 (320)
.|-||++.+....+..+. .+.+..+|.-.++++.+... ....||+ -+| +|
T Consensus 27 ~P~CGFS~~~vqiL~~~g-----~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 27 FPQCGFSAQAVQILSACG-----VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred CCCCCccHHHHHHHHHcC-----CcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 578999998888776654 23333334445566655432 2456776 344 66
No 385
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=25.13 E-value=3.6e+02 Score=21.64 Aligned_cols=87 Identities=9% Similarity=0.181 Sum_probs=55.2
Q ss_pred cCCCeEEEEEEcCCCH----HHHhh--HHHHHHHHHHcCCCCeEEEec-cCCC----------------hhHHHhCCCCc
Q 020846 79 NSHEYVAVLFYASWCP----FSRNF--RPSFSVLSSLYSSIPHFAIEE-SAIR----------------PSILSKYGVHG 135 (320)
Q Consensus 79 ~~~~~vlV~Fya~wC~----~Ck~~--~p~~~~la~~~~~~~~v~~~~-~~~~----------------~~l~~~~~V~~ 135 (320)
+..|+.+|+-..|--. .|++. .+.+-+.-+ .+.+..+-+- .+++ ....+.++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 4578999999998773 56665 233333322 1233333321 1111 12455678999
Q ss_pred cCeEEEE--eC---ceeEEEeCCCCHHHHHHHHHHhh
Q 020846 136 FPTLFLL--NS---SMRVRYHGSRTLDSLVAFYSDVT 167 (320)
Q Consensus 136 ~Pti~l~--~g---~~~~~~~G~~~~~~l~~~i~~~~ 167 (320)
+|.+.++ .. ..+.+..|..+.+++.+-+....
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9999888 22 34568899999999998887654
No 386
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=24.82 E-value=1.1e+02 Score=21.95 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred ccCeEEEE--eCceeEEEe-CCCCHHHHHHHHHHhh
Q 020846 135 GFPTLFLL--NSSMRVRYH-GSRTLDSLVAFYSDVT 167 (320)
Q Consensus 135 ~~Pti~l~--~g~~~~~~~-G~~~~~~l~~~i~~~~ 167 (320)
.-|+++++ +|+...+.. ...+.+++.+|+.+..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 46899999 566555544 3568899999998753
No 387
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=23.93 E-value=36 Score=37.13 Aligned_cols=27 Identities=4% Similarity=-0.185 Sum_probs=22.6
Q ss_pred ccccccCCCcCCcccCCCcccccChHHHHHHHHHH
Q 020846 189 EKHNNTEEESCPFSWARSPENLLQQETYLALATAF 223 (320)
Q Consensus 189 ~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f 223 (320)
+++.|. + .||.+|+.. .|.++++...|
T Consensus 423 vll~FW----A--sWC~pC~~e--~P~L~~l~~~y 449 (1057)
T PLN02919 423 VILDFW----T--YCCINCMHV--LPDLEFLEKKY 449 (1057)
T ss_pred EEEEEE----C--CcChhHHhH--hHHHHHHHHHc
Confidence 667775 4 899999998 88888888877
No 388
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=23.78 E-value=51 Score=26.55 Aligned_cols=35 Identities=20% Similarity=-0.075 Sum_probs=24.4
Q ss_pred cccccccCCCcCCcccCCCcccccChHHHHHHHHHHHHHHHHhh
Q 020846 188 HEKHNNTEEESCPFSWARSPENLLQQETYLALATAFVLLRLVYI 231 (320)
Q Consensus 188 ~~~~~f~~~~~~~~~wc~~c~~~~~~~~~~~la~~f~~~~~~i~ 231 (320)
.+++.|. + .||. |..- .|.+.++...|....+.+.
T Consensus 24 ~vvl~fw----a--twC~-C~~e--~p~l~~l~~~~~~~~~~vv 58 (152)
T cd00340 24 VLLIVNV----A--SKCG-FTPQ--YEGLEALYEKYKDRGLVVL 58 (152)
T ss_pred EEEEEEE----c--CCCC-chHH--HHHHHHHHHHhcCCCEEEE
Confidence 3555564 4 8999 9887 7888888888865444333
No 389
>PF05364 SecIII_SopE_N: Salmonella type III secretion SopE effector N-terminus; InterPro: IPR016018 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Salmonella spp. secrete an effector protein called SopE that is responsible for stimulating the reorganisation of the host cell actin cytoskeleton, and ruffling of the cellular membrane []. It acts as a guanyl-nucleotide-exchange factor on Rho-GTPase proteins such as Cdc42 and Rac. As it is imperative for the bacterium to revert the cell back to its "normal" state as quickly as possible, another tyrosine phosphatase effector called SptP reverses the actions brought about by SopE []. Recently, it has been found that SopE and its protein homologue SopE2 can activate different sets of Rho-GTPases in the host cell []. Far from being a redundant set of two similar type III effectors, they both act in unison to specifically activate different Rho-GTPase signalling cascades in the host cell during infection. This entry represents the N-terminal domain of SopE. The function of this domain is unknown.
Probab=23.17 E-value=23 Score=24.55 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=15.2
Q ss_pred eeecCCC-CCcCccccccCcCC
Q 020846 300 TVSIGDA-SSSRGACVNECHFH 320 (320)
Q Consensus 300 ~~~~~~~-~~~~~~~~~~~~~~ 320 (320)
|++|-|. |+-++.-.++.|||
T Consensus 45 s~~LserF~~hkqTe~~athfH 66 (74)
T PF05364_consen 45 SSSLSERFSSHKQTESSATHFH 66 (74)
T ss_pred hccchHHHHHhhccCCCccccc
Confidence 3456666 66688888888888
No 390
>PLN02182 cytidine deaminase
Probab=22.89 E-value=40 Score=31.46 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=11.5
Q ss_pred EEcCCCHHHHhhHHHH
Q 020846 88 FYASWCPFSRNFRPSF 103 (320)
Q Consensus 88 Fya~wC~~Ck~~~p~~ 103 (320)
+++| ||+||++.-+|
T Consensus 128 ~~sP-CG~CRQfm~Ef 142 (339)
T PLN02182 128 FGTP-CGHCLQFLMEM 142 (339)
T ss_pred CcCC-CchhHHHHHHh
Confidence 3555 99999997666
No 391
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.74 E-value=1e+02 Score=24.02 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=17.9
Q ss_pred EEEEEcCCCHHHHhhHHHHHHH
Q 020846 85 AVLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 85 lV~Fya~wC~~Ck~~~p~~~~l 106 (320)
+..|+.|.|..|++....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 4568899999999998877654
No 392
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=20.59 E-value=1e+02 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=16.9
Q ss_pred EEEEcCCCHHHHhhHHHHHHH
Q 020846 86 VLFYASWCPFSRNFRPSFSVL 106 (320)
Q Consensus 86 V~Fya~wC~~Ck~~~p~~~~l 106 (320)
..|+.|.|..|++....+++-
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA 22 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC
Confidence 468889999999988777654
No 393
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=20.29 E-value=1.7e+02 Score=24.13 Aligned_cols=42 Identities=2% Similarity=-0.108 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCHHHHhhHHHHHHHHHHcCC-CCeEEEeccC
Q 020846 81 HEYVAVLFYASWCPFSRNFRPSFSVLSSLYSS-IPHFAIEESA 122 (320)
Q Consensus 81 ~~~vlV~Fya~wC~~Ck~~~p~~~~la~~~~~-~~~v~~~~~~ 122 (320)
++-+.+.++++.++.|.-+.-.++.+|+.|.+ .+.+...+|.
T Consensus 127 ~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~ 169 (171)
T PF07700_consen 127 DNELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECM 169 (171)
T ss_dssp TTEEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred CCEEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 35678899999999999999999999999988 6666666553
Done!