Your job contains 1 sequence.
>020847
MMQQPPSQPSDQTSQYQQQHQQWMAYQQQSQQQQQQHQTPVPPPVGWTPQPVPPPSQQTQ
PYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFI
EFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTD
YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR
IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE
LVHVKIPAGKRCGFVQFANR
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020847
(320 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 989 1.2e-99 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 986 2.4e-99 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 966 3.2e-97 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 935 6.1e-94 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 811 8.5e-81 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 766 5.0e-76 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 761 1.7e-75 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 756 5.7e-75 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 755 7.3e-75 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 748 4.0e-74 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 456 5.4e-59 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 448 2.3e-58 2
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 492 5.4e-47 1
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 485 3.0e-46 1
UNIPROTKB|Q1RMJ7 - symbol:TRNAU1AP "tRNA selenocysteine 1... 389 4.4e-36 1
UNIPROTKB|E1BZH5 - symbol:TRNAU1AP "Uncharacterized prote... 389 4.4e-36 1
UNIPROTKB|E2QV44 - symbol:TRNAU1AP "Uncharacterized prote... 388 5.7e-36 1
UNIPROTKB|Q9NX07 - symbol:TRNAU1AP "tRNA selenocysteine 1... 388 5.7e-36 1
UNIPROTKB|I3LHP4 - symbol:TRNAU1AP "Uncharacterized prote... 388 5.7e-36 1
RGD|619995 - symbol:Secp43 "tRNA selenocysteine associate... 386 9.2e-36 1
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 250 1.2e-35 2
MGI|MGI:1919037 - symbol:Trnau1ap "tRNA selenocysteine 1 ... 384 1.5e-35 1
ZFIN|ZDB-GENE-040426-2386 - symbol:trnau1apl "tRNA seleno... 383 1.9e-35 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 312 2.6e-32 2
CGD|CAL0004999 - symbol:orf19.6790 species:5476 "Candida ... 214 7.1e-31 2
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 324 3.4e-29 1
CGD|CAL0001768 - symbol:orf19.1876 species:5476 "Candida ... 323 4.4e-29 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 322 5.6e-29 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 287 9.7e-29 2
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 316 2.4e-28 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 312 6.4e-28 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 312 6.4e-28 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 310 1.0e-27 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 309 1.3e-27 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 308 1.7e-27 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 302 7.3e-27 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 300 1.2e-26 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 300 1.2e-26 1
FB|FBgn0031607 - symbol:CG15440 species:7227 "Drosophila ... 296 3.2e-26 1
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 297 4.5e-26 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 294 5.2e-26 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 294 5.2e-26 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 290 1.4e-25 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 290 1.4e-25 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 290 1.4e-25 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 290 1.4e-25 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 289 1.8e-25 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 289 1.8e-25 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 289 1.8e-25 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 289 1.8e-25 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 289 1.8e-25 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 289 1.8e-25 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 287 2.9e-25 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 287 2.9e-25 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 287 2.9e-25 1
ZFIN|ZDB-GENE-050522-502 - symbol:trnau1ap "tRNA selenocy... 279 2.0e-24 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 212 2.3e-24 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 275 5.3e-24 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 241 2.0e-23 2
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 245 8.1e-23 2
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 222 1.7e-22 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 185 4.3e-21 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 218 7.3e-21 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 218 7.3e-21 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 249 2.4e-20 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 197 3.2e-20 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 197 3.2e-20 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 248 3.4e-20 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 201 3.4e-20 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 247 4.4e-20 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 246 5.6e-20 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 195 5.7e-20 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 245 5.9e-20 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 195 7.3e-20 2
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 240 8.8e-20 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 197 9.0e-20 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 197 9.0e-20 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 244 1.0e-19 1
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 197 1.0e-19 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 197 1.0e-19 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 197 1.2e-19 2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 195 1.2e-19 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 197 1.2e-19 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 197 1.2e-19 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 197 1.3e-19 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 196 1.3e-19 2
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 198 1.3e-19 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 196 1.3e-19 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 196 2.2e-19 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 196 2.2e-19 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 196 2.2e-19 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 195 2.9e-19 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 193 2.9e-19 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 193 2.9e-19 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 193 2.9e-19 2
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 194 3.1e-19 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 193 3.4e-19 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 193 3.7e-19 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 216 6.4e-19 2
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 228 1.1e-18 1
WARNING: Descriptions of 757 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 189/256 (73%), Positives = 217/256 (84%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+P + + +RSLWIGDLQ WM+E+Y+++ F HTGE VS KVIRNKQT SEGYGF+EF S
Sbjct: 75 SPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRS 134
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
HAAAE +LQT+NGT MP+ EQNFR+NWA+ GAGERR DD + TIFVGDLAADVTDY+LQ
Sbjct: 135 HAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERR-DDSAEHTIFVGDLAADVTDYILQ 193
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
ETF++VYSSV+GAKVVTDR TGRSKGYGFV+F DESEQLR+MTEMNGVLCSTRPMRIGPA
Sbjct: 194 ETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPA 253
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
A KK G QKATYQN Q +QGE+DPNNTTIFVGGLDP+V ++ L+ VF YGELVHV
Sbjct: 254 ANKKPV-GTP-QKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHV 311
Query: 305 KIPAGKRCGFVQFANR 320
KI AGKRCGFVQF R
Sbjct: 312 KIVAGKRCGFVQFGTR 327
Score = 122 (48.0 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 51/208 (24%), Positives = 90/208 (43%)
Query: 63 GVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIE 121
G D S++ ++++GDL + + + F V G KV+ ++ T S+GYGF++
Sbjct: 167 GERRDDSAE--HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVK 224
Query: 122 FVSHAAAERVLQTFNGTQMPSTEQNF--RLNW--------ATYGAGERRQ--DDGPDFTI 169
F + R + NG + N ATY + Q D + TI
Sbjct: 225 FADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTI 284
Query: 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229
FVG L V + L++ F + Y + K+V K GFV+FG + ++++ +
Sbjct: 285 FVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA------GKRCGFVQFGTRASAEQALSSL 337
Query: 230 NGVLCSTRPMRI--GPAATKKAATGQQY 255
NG + +R+ G + + K Q+
Sbjct: 338 NGTQLGGQSIRLSWGRSPSSKQTDQTQW 365
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 186/252 (73%), Positives = 214/252 (84%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
S+ IRSLWIGDLQPWM+E+Y+ ++FG TGE + KVIRNKQ +SEGYGFIEFV+HA A
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
ER LQT+NG MPS+EQ FRLNWA GAGERRQ +GP+ T+FVGDLA DVTD++L ETF+
Sbjct: 135 ERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
AVYSSVKGAKVV DRTTGRSKGYGFVRF DESEQ+R+MTEMNG CS+RPMR GPAA KK
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
T Q A+YQNTQG+ GE+DP NTTIFVG +D SVT+D LK+VFGQ+GELVHVKIPA
Sbjct: 255 PLT---MQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA 311
Query: 309 GKRCGFVQFANR 320
GKRCGFVQ+ANR
Sbjct: 312 GKRCGFVQYANR 323
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 45/196 (22%), Positives = 87/196 (44%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++++GDL P + + + F V G KV+ ++ T S+GYGF+ F + R +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 134 TFNG---TQMP------STEQNFRLNWATYG--AGERRQDDGPDFTIFVGDLAADVTDYV 182
NG + P + ++ + A+Y G + D + TIFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI- 241
L+ F + + K+ K GFV++ + + ++++ +NG + +R+
Sbjct: 294 LKSVF-GQFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLS 346
Query: 242 -GPAATKKAATGQQYQ 256
G + + K Q Q
Sbjct: 347 WGRSPSNKQTQPDQAQ 362
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
Identities = 187/264 (70%), Positives = 216/264 (81%)
Query: 62 YGVA---PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYG 118
YG+ P ++SD ++SLWIGDLQ WM+E+YI S+F +GE S KVIRNK T SEGYG
Sbjct: 46 YGIGSQNPGSASD-VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAAD 177
FIEFVSH+ AERVLQT+NG MPSTEQ FRLNWA GAGE+R Q +GPD TIFVGDLA +
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPE 164
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
VTDY+L +TF+ VY SVKGAKVV DRTTGRSKGYGFVRF DE+EQ+R+MTEMNG CSTR
Sbjct: 165 VTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224
Query: 238 PMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFG 296
PMRIGPAA K A Q A YQNTQG+ G+NDPNNTTIFVGGLD +VTDD LK++FG
Sbjct: 225 PMRIGPAANKNALP---MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 297 QYGELVHVKIPAGKRCGFVQFANR 320
Q+GEL+HVKIP GKRCGFVQ+AN+
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANK 305
Score = 134 (52.2 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 49/194 (25%), Positives = 89/194 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++++GDL P + + ++ F + V G KV+ ++ T S+GYGF+ F R +
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 134 TFNGTQM--------PSTEQN-FRLNWATYG--AGERRQDDGPD-FTIFVGDLAADVTDY 181
NG P+ +N + A Y G D+ P+ TIFVG L A+VTD
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+ F + + K+ K GFV++ +++ +++ +NG + +R+
Sbjct: 275 ELKSIF-GQFGELLHVKIPP------GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRL 327
Query: 242 --GPAATKKAATGQ 253
G + K++ Q
Sbjct: 328 SWGRSPNKQSDQAQ 341
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
Identities = 183/259 (70%), Positives = 211/259 (81%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V P ++D IR+LWIGDLQ WM+E+++ F HTGE VS KVIRNKQT EGYGFIEF
Sbjct: 53 VQP-TTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 124 SHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
SHAAAERVLQTFN +PS +Q FRLNWA+ +G++R DD PD+TIFVGDLAADVTDY+
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR-DDSPDYTIFVGDLAADVTDYI 170
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
L ETFRA Y SVKGAKVV DR TGR+KGYGFVRF DESEQ+R+MTEMNGV CSTRPMRIG
Sbjct: 171 LLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIG 230
Query: 243 PAATKKAATGQQYQKATYQNTQ-GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
PAA+KK TGQ + +YQ++ G +NDPNNTT+FVGGLD SVTDD LK VF QYGE+
Sbjct: 231 PAASKKGVTGQ---RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI 287
Query: 302 VHVKIPAGKRCGFVQFANR 320
VHVKIPAGKRCGFVQF+ +
Sbjct: 288 VHVKIPAGKRCGFVQFSEK 306
Score = 142 (55.0 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 53/223 (23%), Positives = 95/223 (42%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++++GDL + + + F + V G KV+ ++ T ++GYGF+ F + R +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 134 TFNGTQM--------PSTEQNF----RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
NG P+ + R ++ + AG +D + T+FVG L A VTD
Sbjct: 216 EMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDD 275
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+ F + Y + K+ K GFV+F ++S ++ +NGV +R+
Sbjct: 276 HLKNVF-SQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
Query: 242 G---PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGG 281
+ K++ Q+ Y Q G P + + GG
Sbjct: 329 SWGRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNAYYGG 371
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 158/263 (60%), Positives = 197/263 (74%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+SS+ +++WIGDLQ WM+ESY+ S F GE +S K+IRNKQT SE YGF+EF +HAA
Sbjct: 78 SSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAA 137
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+VLQ++NGT MP+TEQ FRLNWA + GE+R + G DF+IFVGDLA+DVTD +L++TF
Sbjct: 138 AEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTF 197
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
+ Y S+KGAKVV D TG SKGYGFVRFGDESE+ R+MTEMNGV CS+R MRIG A K
Sbjct: 198 ASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK 257
Query: 248 KAATGQQYQKAT------YQN----TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
K + +QY Y + T GSQ + D +NTTIFVGGLD VTD+ L+ F Q
Sbjct: 258 KPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQ 317
Query: 298 YGELVHVKIPAGKRCGFVQFANR 320
+GE+V VKIPAGK CGFVQF++R
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDR 340
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 152/260 (58%), Positives = 187/260 (71%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+ D +++LW+GDL WM+E+Y+ + F HT E S KVIRNKQT SEGYGF+EF+S +A
Sbjct: 113 SGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSA 172
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQET 186
AE LQ+F+G MP+ EQ FRLNWA++ GE+R ++GPD +IFVGDLA DV+D VL ET
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLET 232
Query: 187 FRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246
F Y SVKGAKVV D TGRSKGYGFVRFGDE+E+ R+MTEMNG CS+R MR+G A
Sbjct: 233 FAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATP 292
Query: 247 KKAAT-GQQY--QKATYQNTQGSQG---ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300
K+AA GQQ Q T G G + + NN+TIFVGGLD VT++ L F +GE
Sbjct: 293 KRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGE 352
Query: 301 LVHVKIPAGKRCGFVQFANR 320
+V VKIP GK CGFVQFANR
Sbjct: 353 VVSVKIPVGKGCGFVQFANR 372
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 60/224 (26%), Positives = 94/224 (41%)
Query: 68 ASSDGIR-SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSH 125
AS +G S+++GDL P + ++ + F V G KV+ + T S+GYGF+ F
Sbjct: 206 ASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDE 265
Query: 126 AAAERVLQTFNGTQMPSTEQNFRL----NWATYG--------------AGERRQDDGP-- 165
R + NG S + + A YG G DG
Sbjct: 266 NERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESN 325
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
+ TIFVG L ADVT+ L + F + + V K+ KG GFV+F + +
Sbjct: 326 NSTIFVGGLDADVTEEDLMQPF-SDFGEVVSVKIPV------GKGCGFVQFANRQSAEEA 378
Query: 226 MTEMNGVLCSTRPMRI--GPAATK--KAATGQQYQKATYQNTQG 265
+ +NG + +R+ G + K ++ +G Q+ Y QG
Sbjct: 379 IGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWNGG-YSRGQG 421
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 159/261 (60%), Positives = 189/261 (72%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+R+LWIGDLQ W++E+Y+ S F TGE VS KVIRNK T EGYGFIEF+SHAAAER L
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
QT+NGTQMP TE FRLNWA++G+G++ D GPD +IFVGDLA DVTDY+LQETFR YS
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK-AAT 251
SV+GAKVVTD +TGRSKGYGFV+F +ESE+ R+M EMNG+ CSTRPMRI A KK
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 252 GQQY-QKATYQNTQGS------QG-----ENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
QQY KA Y T S Q E+D TTI V LD +VT++ LK F Q G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 300 ELVHVKIPAGKRCGFVQFANR 320
E+++VKIPA K G+VQF R
Sbjct: 262 EVIYVKIPATKGYGYVQFKTR 282
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 148/250 (59%), Positives = 183/250 (73%)
Query: 74 RSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+++W+GDL WM+E+Y+ S F G E VS KVIRNK SEGYGF+EF SH A++V
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
L+ FNGT MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDL+ DV+D +L ETF
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA +K
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT- 279
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK 310
G Q Q N ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VKIP GK
Sbjct: 280 NGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK 339
Query: 311 RCGFVQFANR 320
CGFVQF NR
Sbjct: 340 GCGFVQFVNR 349
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 46/181 (25%), Positives = 81/181 (44%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ++ + F V + KV+ + T S+GYGF+ F + +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 134 TFNGTQM--------PSTEQ--NFRLNWATY---GAGERRQDDGPDFTIFVGDLAADVTD 180
NG + P+T + N Y G R + D + TIFVG L + VTD
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
L++ F + + K+ KG GFV+F + ++ ++NG + + +R
Sbjct: 318 EDLKQPFNE-FGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 370
Query: 241 I 241
+
Sbjct: 371 L 371
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 48/175 (27%), Positives = 83/175 (47%)
Query: 157 GERRQD--DGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGF 213
G + Q+ +G + TI+VGDL + + L +F + + KV+ ++ G S+GYGF
Sbjct: 89 GNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGF 148
Query: 214 VRFGDESEQLRSMTEMNGVLC--STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGEND 271
V F + + E NG + +P R+ A+ +TG++ + EN+
Sbjct: 149 VEFESHDVADKVLREFNGTTMPNTDQPFRLNWASF---STGEK------------RLENN 193
Query: 272 PNNTTIFVGGLDPSVTDDILKTVFGQ-YGELVHVKIPA------GKRCGFVQFAN 319
+ +IFVG L P V+D++L F + Y + K+ K GFV+F +
Sbjct: 194 GPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 148/250 (59%), Positives = 182/250 (72%)
Query: 74 RSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+++W+GDLQ WM+E+Y+ S F E VS KVIRNK SEGYGF+EF SH A++V
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
LQ FNG MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDLA DV+D +L ETF
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA +K
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT- 281
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK 310
G Q Q + ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VKIP GK
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Query: 311 RCGFVQFANR 320
CGFVQF NR
Sbjct: 342 GCGFVQFVNR 351
Score = 140 (54.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 47/181 (25%), Positives = 83/181 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ++ + F V + KV+ + T S+GYGF+ F + +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 134 TFNGTQM--------PSTEQ--NFRLNWATY---GAGERRQDDGPDFTIFVGDLAADVTD 180
NG + P+T + N Y GA R + D + TIFVG L + VTD
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
L++ F + + + K+ KG GFV+F + ++ ++NG + + +R
Sbjct: 320 EDLKQPF-SEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVR 372
Query: 241 I 241
+
Sbjct: 373 L 373
Score = 125 (49.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 49/175 (28%), Positives = 83/175 (47%)
Query: 157 GERRQD--DGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGF 213
G + Q+ +G + TI+VGDL + + L F + + KV+ ++ G S+GYGF
Sbjct: 91 GNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGF 150
Query: 214 VRFGDESEQLRSMTEMNGV-LCST-RPMRIGPAATKKAATGQQYQKATYQNTQGSQGEND 271
V F + + E NG + +T +P R+ A+ +TG++ + EN+
Sbjct: 151 VEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASF---STGEK------------RLENN 195
Query: 272 PNNTTIFVGGLDPSVTDDILKTVFGQ-YGELVHVKIPA------GKRCGFVQFAN 319
+ +IFVG L P V+D +L F + Y + K+ K GFV+F +
Sbjct: 196 GPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 250
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 146/264 (55%), Positives = 187/264 (70%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
S D +++LW+GDL WM+E+Y+ S F HTGE S KVIRNK T+ SEGYGF+EF+S AAA
Sbjct: 103 SGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAA 162
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ-DDGPDFTIFVGDLAADVTDYVLQETF 187
E VLQ ++G+ MP+++Q FR+NWA++ GE+R ++GPD ++FVGDL+ DVTD +L ETF
Sbjct: 163 EEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETF 222
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
Y SVK AKVV D TGRSKGYGFVRFGDE+E+ R++TEMNG CS R MR+G A K
Sbjct: 223 SDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Query: 248 KAATGQQYQKATY--------QNTQ---GSQGENDPNNTTIFVGGLDPSVTDDILKTVFG 296
+A QQ + N GSQ + + N TIFVGG+DP V D+ L+ F
Sbjct: 283 RAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFS 342
Query: 297 QYGELVHVKIPAGKRCGFVQFANR 320
Q+GE+V VKIP GK CGFVQFA+R
Sbjct: 343 QFGEVVSVKIPVGKGCGFVQFADR 366
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 456 (165.6 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 97/215 (45%), Positives = 140/215 (65%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEF 122
V P + D ++LW+G+L+PWM+E++I I+ GE V+ KVIR++Q+ + GY F+EF
Sbjct: 38 VVPQGN-DSAKTLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSG-NAGYCFVEF 95
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAG--ERRQDDGPDFTIFVGDLAADVTD 180
S AA + L NG+ +P++++ F+LNWA+ G G +RR + GP+++IFVGDL +V +
Sbjct: 96 PSSEAATKALG-LNGSPVPNSQRVFKLNWAS-GGGLVDRRDERGPEYSIFVGDLGPEVNE 153
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
+VL F+A + S K AK++TD TG+S+GYGFVRF DES+Q R++ EM GV C RPMR
Sbjct: 154 FVLVSLFQARFPSCKSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMR 213
Query: 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275
I AT K + QQY QG G N T
Sbjct: 214 IS-TATPKTRSHQQY------GNQGPHGAGPMNMT 241
Score = 167 (63.8 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
DPNNTT+FVGGL VT+D L++ F +G++ +VKIP GK CGFVQF +R
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHR 329
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 448 (162.8 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 86/186 (46%), Positives = 130/186 (69%)
Query: 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE-GYGFIEFVSHAAA 128
++G +LW+G+L+PW++E+++ +++ GE V+ K+IR+K + S GY F++F S AAA
Sbjct: 61 NEGKTTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAA 120
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDD-GPDFTIFVGDLAADVTDYVLQET 186
+ L + NGT MP+T + F+LNWAT G +R +DD GP+++IFVGDL +V +YVL
Sbjct: 121 AKAL-SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSL 179
Query: 187 FRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246
F++ + S K AK++TD +G S+GYGFVRF DE++Q R+++EM GV C RPMRI A
Sbjct: 180 FQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATP 239
Query: 247 KKAATG 252
K G
Sbjct: 240 KNKGPG 245
Score = 169 (64.5 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
DPNNTT+FVGGL VT+D L++ F +GE+ +VKIP GK CGFVQF R
Sbjct: 282 DPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQR 331
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 106/270 (39%), Positives = 158/270 (58%)
Query: 62 YGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIE 121
YG + D + +LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+E
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 122 FVS-HAAAERVLQTFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVT 179
F S H A+ + + N +P T F+LNWA+ G E+ +++IFVGDL+ +V
Sbjct: 141 FASPHEASSAM--SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVN 198
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
++ + F + Y+S K AK++TD T S+GYGFVRF DE++Q ++ EM G +C RP+
Sbjct: 199 EFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPI 258
Query: 240 RIGPAATK-KAATGQQYQKAT--------YQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290
R+G A K KA Y Q D N+T+FVGGL V+++
Sbjct: 259 RVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEE 318
Query: 291 LKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
LK +F +GE+V+VKIP GK CGFVQF NR
Sbjct: 319 LKYLFQNFGEIVYVKIPPGKGCGFVQFVNR 348
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 104/258 (40%), Positives = 151/258 (58%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE---GYGFIEFVSHAAAERV 131
+LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ SE Y F++F S AAAER
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASS-SETLISYCFVQFSSSAAAERA 144
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRA 189
L +N T +P F+LNWAT G + P+F+IFVGDL D L TFR+
Sbjct: 145 LMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
+Y S AK++ D TG S+ YGFVRF E EQ ++ M G LC RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 250 AT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A+ + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 303 HVKIPAGKRCGFVQFANR 320
++KIP GK CGFVQ++ +
Sbjct: 325 NIKIPFGKGCGFVQYSEK 342
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 82/177 (46%), Positives = 115/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+T G SKGYGFV+F DE EQ R++TE G + ++P+R+ A K
Sbjct: 121 PSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPK 176
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 146
>UNIPROTKB|E1BZH5 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:AADN02043953
IPI:IPI00576069 RefSeq:XP_417743.3 ProteinModelPortal:E1BZH5
Ensembl:ENSGALT00000001994 GeneID:419597 KEGG:gga:419597 CTD:419597
Uniprot:E1BZH5
Length = 287
Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
Identities = 81/177 (45%), Positives = 115/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++++ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL ADV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTADVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+ G SKGYGFV+F DE EQ R++TE G + ++P+R+ A K
Sbjct: 121 PSCRGGKVVLDQA-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
Score = 120 (47.3 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 45/158 (28%), Positives = 73/158 (46%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFVSRAFATMGELVLSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTADVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQAGVSKGYGFVKFTD 146
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 82/177 (46%), Positives = 115/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+T G SKGYGFV+F DE EQ R++TE G + ++P+R+ A K
Sbjct: 121 PSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 146
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 82/177 (46%), Positives = 115/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+T G SKGYGFV+F DE EQ R++TE G + ++P+R+ A K
Sbjct: 121 PSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 146
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 82/177 (46%), Positives = 115/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+T G SKGYGFV+F DE EQ R++TE G + ++P+R+ A K
Sbjct: 121 PSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 176
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 146
>RGD|619995 [details] [associations]
symbol:Secp43 "tRNA selenocysteine associated protein"
species:10116 "Rattus norvegicus" [GO:0000049 "tRNA binding"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:619995 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000049
HSSP:P11940 GO:GO:0001514 HOVERGEN:HBG056959 EMBL:AF181856
IPI:IPI00215043 RefSeq:NP_075416.1 UniGene:Rn.170540
ProteinModelPortal:Q9QZI7 SMR:Q9QZI7 GeneID:65241 KEGG:rno:65241
CTD:65241 NextBio:614199 Genevestigator:Q9QZI7 Uniprot:Q9QZI7
Length = 287
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 82/177 (46%), Positives = 114/177 (64%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D+T G SKGYGFV+F DE EQ R++TE G + +P+R+ A K
Sbjct: 121 PSCRGGKVVLDQT-GVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
Score = 133 (51.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 46/158 (29%), Positives = 75/158 (47%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-Y-----GELVHVKIPAGKRCGFVQFAN 319
D +L F + Y G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTD 146
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 250 (93.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 70/221 (31%), Positives = 115/221 (52%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVS 124
L++GDL P +++ + I+ GE ++ +++ N N ++GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 125 HAAAERVLQTFNGTQMPS-TEQNFRLNWAT--YGAGERRQDD---GPDFTIFVGDLAADV 178
A L NG +P+ + +LNWAT Y ++ G + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T+ L E F Y+S AK+V D+ TG SKGYGFV+F + EQ +++EM GV + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 239 MRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
+++GP + + QQ+ + S N+ N + F+
Sbjct: 235 IKVGPTSGQ-----QQHVSGNNDYNRSSSSLNNENVDSRFL 270
Score = 165 (63.1 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 271 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ+ +R
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDR 358
Score = 90 (36.7 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVS-GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ES + +F + S K++ ++ T S+GYGF++F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 134 TFNG 137
G
Sbjct: 224 EMQG 227
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 82/177 (46%), Positives = 113/177 (63%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
S +G KVV D TG SKGYGFV+F DE EQ R++TE G + +P+R+ A K
Sbjct: 121 PSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPK 176
Score = 132 (51.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 47/158 (29%), Positives = 74/158 (46%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P + +FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPEYS-LFVGDLTPDVD 108
Query: 288 DDILKTVFGQ-YGELVHVKI---PAG--KRCGFVQFAN 319
D +L F + Y K+ P G K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTD 146
>ZFIN|ZDB-GENE-040426-2386 [details] [associations]
symbol:trnau1apl "tRNA selenocysteine 1 associated
protein 1, like" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2386 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234338 OrthoDB:EOG44BB34 EMBL:BC098884
IPI:IPI00833586 UniGene:Dr.5347 ProteinModelPortal:Q4KM14
SMR:Q4KM14 STRING:Q4KM14 PRIDE:Q4KM14 InParanoid:Q4KM14
ArrayExpress:Q4KM14 Uniprot:Q4KM14
Length = 316
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 86/207 (41%), Positives = 122/207 (58%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 134 TFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + F +
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATK--K 248
S KGAKVVTD G S+GYGFV+F DE+EQ +++ E N +P+RI A K K
Sbjct: 124 PSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT 275
A+T Q TY Q P N+
Sbjct: 183 ASTYHN-QNNTYNTNYQQQYYRQPYNS 208
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 312 (114.9 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 73/185 (39%), Positives = 107/185 (57%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEG--YGFIEFVSHAAAERV 131
R+L++G L P + E + IF TG +S K+I +K N S+G YGF+EF AAER
Sbjct: 90 RALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFN-SKGANYGFVEFDDPGAAERA 148
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+QT NG ++ +E R+NWA ++D F IFVGDL+ +V D VL + F A +
Sbjct: 149 MQTLNGRRIHQSE--IRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA-F 205
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251
SV A+V+ D TGRS+GYGFV F + ++ +++T M+G +R +R A K +
Sbjct: 206 GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPS 265
Query: 252 GQQYQ 256
Q Q
Sbjct: 266 ISQQQ 270
Score = 123 (48.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 51/175 (29%), Positives = 74/175 (42%)
Query: 155 GAGERRQDDGPDF-TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKG--Y 211
G RR P+ ++VG L VT+ +L++ F V K++ D+ SKG Y
Sbjct: 77 GGYVRRAAPEPNKRALYVGGLDPRVTEDILKQIFETT-GHVISVKIIPDKNFN-SKGANY 134
Query: 212 GFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGEND 271
GFV F D R+M +NG +R+ A YQ NT E+
Sbjct: 135 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWA----------YQS----NTANK--EDT 178
Query: 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
N+ IFVG L V D++L F +G + ++ G+ GFV F R
Sbjct: 179 SNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRER 233
Score = 61 (26.5 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQ 316
TT +VG L P T + + +F +G ++ ++ A + F++
Sbjct: 308 TTCYVGNLTPYTTQNDIVPLFQNFGYVIETRMQADRGFAFIK 349
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 214 (80.4 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
Identities = 60/181 (33%), Positives = 96/181 (53%)
Query: 108 NKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS----TEQNF-----------RLNWA 152
N Q + GY F+EF S A+ L + NG +P ++ NF RLNWA
Sbjct: 181 NFQGLTNSGYCFVEFESFEDAQHAL-SLNGQLLPDIAMPSQSNFPNNPDNQKKYFRLNWA 239
Query: 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY-SSVKGAKVVTDRTTGRSKGY 211
+ P++++FVGDL+A T+ L F+ + +S+K +V+TD +G+S+ +
Sbjct: 240 SGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCF 299
Query: 212 GFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---TGQQY--QKATYQNTQGS 266
GFVRF +ESE+ R++ EMNG + RP+R+ A + A +++ Q YQ+ Q
Sbjct: 300 GFVRFTEESERQRALIEMNGAWFAGRPLRVALATPRNVARRFNNRRFSPQHQQYQHQQQQ 359
Query: 267 Q 267
Q
Sbjct: 360 Q 360
Score = 165 (63.1 bits), Expect = 7.1e-31, Sum P(2) = 7.1e-31
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 254 QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
Q+Q +Q+ Q Q DPNNTT+FVGGL V++ L T+F +G + VKIP GK CG
Sbjct: 501 QHQHQ-HQHLQQGQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKIPPGKNCG 559
Query: 314 FVQFANR 320
FV+++NR
Sbjct: 560 FVKYSNR 566
Score = 100 (40.3 bits), Expect = 8.6e-16, Sum P(2) = 8.6e-16
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHT-GEFVSGKVIRNKQT----NF----SEGYGFIEFVS 124
R+LW+GDL PW++E+ I ++ + V K+I+ K NF + GY F+EF S
Sbjct: 138 RTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFVEFES 197
Query: 125 HAAAERVLQTFNGTQMPS----TEQNFRLN 150
A+ L + NG +P ++ NF N
Sbjct: 198 FEDAQHAL-SLNGQLLPDIAMPSQSNFPNN 226
Score = 77 (32.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/104 (24%), Positives = 46/104 (44%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D + T+FVG L++DV++ L F+ + ++ K+ K GFV++ + E
Sbjct: 517 DPNNTTVFVGGLSSDVSEPTLHTLFKP-FGLIQQVKIPP------GKNCGFVKYSNREEA 569
Query: 223 LRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQ 264
++ M G + +R+ G + QQ Q+ Q Q
Sbjct: 570 EEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQQQQQQVAQVAQ 613
Score = 65 (27.9 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 75 SLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
SL++GDL E+++ + F + +V+ + + S +GF+ F + +R L
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRAL 314
Query: 133 QTFNG 137
NG
Sbjct: 315 IEMNG 319
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 80/254 (31%), Positives = 135/254 (53%)
Query: 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAE 129
SD R+L++G+L + E +IA++F G KVI + ++ Y F+EF H A
Sbjct: 42 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGS---NDPYAFVEFSDHGQAS 98
Query: 130 RVLQTFNGTQMPSTEQNFRLNWATY-GAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
+ LQT N + ++ ++NWA G + + D F +FVGDL+++V + L+E F+
Sbjct: 99 QALQTMNKRLL--LDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQ 156
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ V AKV+ D T +SKGYGFV + E R++ +MNG R +R AT+K
Sbjct: 157 P-FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTN-WATRK 214
Query: 249 AATGQQYQKATYQNTQGSQ--GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
G Q + + Y + + +NT+++VG + S+T+D ++ F +G + V+I
Sbjct: 215 P--GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRI 271
Query: 307 PAGKRCGFVQFANR 320
+ FV+F N+
Sbjct: 272 FKMQGYAFVKFDNK 285
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 41/170 (24%), Positives = 83/170 (48%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL ++ + F G+ KVIR+ T S+GYGF+ + AER ++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 136 NGTQMPSTEQNFRLNWATYGAGERR---------------QDDGPDFTIFVGDLAADVTD 180
NG + + R NWAT G++ Q G + +++VG++A+ +T+
Sbjct: 197 NGQWLG--RRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTE 253
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230
+++ F A + + ++ + +GY FV+F ++ +++ +MN
Sbjct: 254 DEIRQGF-ASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMN 296
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 77/258 (29%), Positives = 141/258 (54%)
Query: 76 LWIGDLQP-WMEESYIASIFGH-TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
+W+GDL P W EES I +++ + K++R++ Y F+ F + + +Q
Sbjct: 85 MWMGDLDPQWTEES-IDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQ 143
Query: 134 TFNGTQMPSTEQNFRLNWA---TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
NG ++P + + F+LN++ + G+ +R + +++IF+GDLA +V+D L F
Sbjct: 144 R-NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMK 202
Query: 191 Y-SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-- 247
Y + +K AKV+TD +T +SKG+GFV+F R++ EM G ++ +R+G AA
Sbjct: 203 YPNQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHV 262
Query: 248 ----KAATGQQYQKATYQNTQGSQGE-NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
K T + + +Q + + DPNNT+ +GGL +T+ L+ F +G+LV
Sbjct: 263 DTSFKPVTKLDHHRVPVPQSQPALNQFTDPNNTSFTIGGLSGRITESELEQHFIGFGDLV 322
Query: 303 HVKIPAGKRCGFVQFANR 320
+ ++ + G+++F +R
Sbjct: 323 YCRVSKDYQTGYIKFYSR 340
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 89/261 (34%), Positives = 137/261 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
RS+++G++ + E + IF TG S K+IR +++ YGF+ + +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
+ NG + Q ++NWA Y G+R +D F IFVGDL+ +VTD L ++F +V+SS
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFSS 169
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
A+V+ D+ TGRS+G+GFV F ++ + ++ EMNG S+R +R ATK A +G
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCN-WATKGATSGD 228
Query: 254 QYQ----KATYQNTQGSQ-------GENDPNN----TTIFVGGLDPSVTDDILKTVFGQY 298
K+ + T GS E P N TT++VG L P VT L F
Sbjct: 229 DKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHAL 288
Query: 299 GELV--HVKIPAGKRCGFVQF 317
G V V++ K GFV++
Sbjct: 289 GAGVIEEVRVQRDKGFGFVRY 309
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 287 (106.1 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 68/183 (37%), Positives = 104/183 (56%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G L + E + IF TG + K+I +K YGF+E+ AA+R +Q
Sbjct: 85 RALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAK-GYNYGFVEYDDPGAADRAMQ 143
Query: 134 TFNGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T NG ++ +E R+NWA A ++D F IFVGDL+ +V D VL + F +V+
Sbjct: 144 TLNGRRVHQSE--IRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAF-SVFG 200
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAAT 251
SV A+V+ D TGRS+GYGFV F D S+ ++++ M+G +R +R A K + +
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 252 GQQ 254
QQ
Sbjct: 261 AQQ 263
Score = 56 (24.8 bits), Expect = 9.7e-29, Sum P(2) = 9.7e-29
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQ 316
TT +VG L P T + + +F +G +V + A + F++
Sbjct: 302 TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQADRGFAFIK 343
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 90/264 (34%), Positives = 136/264 (51%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
RS++ G++ + E + IF TG S K+IR +++ YGF+ + A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAIM 118
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
T NG + Q ++NWA Y G+R +D F IFVGDL+ +VTD L ++F A S
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQR-EDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 194 ---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
+ A+V+ D+ TGRS+G+GFV F ++ + ++ EMNG S+R +R ATK A
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN-WATKGAT 233
Query: 251 TGQQYQ----KATYQNTQGSQ--G---------ENDPNNTTIFVGGLDPSVTDDILKTVF 295
G+ K+ + T GS G EN+P TT++VG L P VT L +F
Sbjct: 234 FGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLF 293
Query: 296 GQYGELV--HVKIPAGKRCGFVQF 317
G V V++ K GFV++
Sbjct: 294 YTLGAGVIEEVRVQRDKGFGFVRY 317
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/246 (29%), Positives = 126/246 (51%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G+L + E I +F G S K+I +N + Y F+EF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALA 66
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGK 122
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 254 QYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
+ T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 313 GFVQFA 318
FV+F+
Sbjct: 243 SFVRFS 248
Score = 147 (56.8 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 159 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 217 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 72/246 (29%), Positives = 126/246 (51%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G+L + E I +F G S K+I +N + Y F+EF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALA 66
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGK 122
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 254 QYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
+ T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 313 GFVQFA 318
FV+F+
Sbjct: 243 SFVRFS 248
Score = 147 (56.8 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 159 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 217 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 70/245 (28%), Positives = 129/245 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHAASALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAF-APFGR 120
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 254 QYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++ +++ K
Sbjct: 181 TYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 313 GFVQF 317
FV+F
Sbjct: 241 SFVRF 245
Score = 151 (58.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 44/173 (25%), Positives = 80/173 (46%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G +V+++ T S+GYGF+ F + AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 136 NGTQMPSTEQNFRLNWAT---------YGAGERR--QDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT Y + ++ DD P + T++ G + + +
Sbjct: 157 GGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGL 214
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
T+ ++++TF + + + +V D KGY FVRF ++ +NG
Sbjct: 215 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 260
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 72/245 (29%), Positives = 130/245 (53%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +FG G S K+I + N + Y F+EF H A L
Sbjct: 8 KTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGN--DPYCFVEFFEHRHAAASLA 65
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 66 AMNGRKIMGKE--VKVNWATSPSSQKK-DTSNHFHVFVGDLSPEITTDDIRAAF-APFGR 121
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A
Sbjct: 122 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKA 181
Query: 254 QYQKAT-YQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
Y+ T + + ++ P+N T++ GG+ +T+ +++ F +G+++ V++ K
Sbjct: 182 TYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGY 241
Query: 313 GFVQF 317
FV+F
Sbjct: 242 SFVRF 246
Score = 148 (57.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 47/200 (23%), Positives = 83/200 (41%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G +V+++ T S+GYGF+ F + AE +Q
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 136 NGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPDFTIFVGDLAADV 178
G + + R NWAT Y + Q + T++ G + +
Sbjct: 158 GGQWLGGRQ--IRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGL 215
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T+ ++++TF + + + +V D KGY FVRF ++ +NG
Sbjct: 216 TEQLMRQTF-SPFGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVSVNGTSLEGHI 268
Query: 239 MRI--GPAATKKAATGQQYQ 256
++ G T + QQ Q
Sbjct: 269 VKCYWGKETTDMVSPMQQVQ 288
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 69/247 (27%), Positives = 130/247 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAF-APFGR 120
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 254 QYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
Y+ T Q + ++ P N T++ GG+ +T+ +++ F +G+++ +++ K
Sbjct: 181 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 313 GFVQFAN 319
F++F++
Sbjct: 241 SFIRFSS 247
Score = 148 (57.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 47/213 (22%), Positives = 88/213 (41%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G +V+++ T S+GYGF+ F + AE +Q
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 136 NGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPDFTIFVGDLAADV 178
G + + R NWAT Y + ++ Q + T++ G + + +
Sbjct: 157 GGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGL 214
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T+ ++++TF + + + +V D KGY F+RF ++ +NG
Sbjct: 215 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNGTTIEGHV 267
Query: 239 MRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
++ G QQ + Y G G+
Sbjct: 268 VKCYWGKETLDMINPVQQQNQIGYPPAYGQWGQ 300
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 69/244 (28%), Positives = 128/244 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAF-APFGR 120
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 180
Query: 254 QYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++ +++ K
Sbjct: 181 TYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 313 GFVQ 316
FV+
Sbjct: 241 SFVR 244
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 68/244 (27%), Positives = 127/244 (52%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 60
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAF-APFGR 116
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ +M G R +R A K A
Sbjct: 117 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS 176
Query: 254 QYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
Y+ T Q + ++ P N T++ GG+ +T+ +++ F +G+++ +++ K
Sbjct: 177 TYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 236
Query: 313 GFVQ 316
F++
Sbjct: 237 SFIR 240
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 84/262 (32%), Positives = 139/262 (53%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
RS+++G++ + E + +F TG S K+IR ++++ YGF+ + +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAIL 109
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
+ NG + Q ++NWA Y +G+R +D F IFVGDL+ +VTD +L F +VY +
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQR-EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVYPT 164
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
A+V+ D+ TGRS+G+GFV F ++ + ++ E+ G +R +R ATK A +G+
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN-WATKGATSGE 223
Query: 254 QYQ----KATYQNTQG--------SQGENDPNN---TTIFVGGLDPSVTDDILKTVFGQY 298
Q K+ + T G + GE NN TT++VG L P V+ L F
Sbjct: 224 DKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSL 283
Query: 299 GELV--HVKIPAGKRCGFVQFA 318
G V V++ K GFV+++
Sbjct: 284 GAGVIEEVRVQRDKGFGFVRYS 305
>FB|FBgn0031607 [details] [associations]
symbol:CG15440 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
eggNOG:COG0724 GeneTree:ENSGT00510000047100 EMBL:AY089645
RefSeq:NP_608837.2 UniGene:Dm.4903 SMR:Q8SXG7 IntAct:Q8SXG7
MINT:MINT-300703 STRING:Q8SXG7 EnsemblMetazoa:FBtr0077454
GeneID:33652 KEGG:dme:Dmel_CG15440 UCSC:CG15440-RA
FlyBase:FBgn0031607 InParanoid:Q8SXG7 OMA:EREFSVW OrthoDB:EOG4F7M1N
ChiTaRS:CG15440 GenomeRNAi:33652 NextBio:784624 Uniprot:Q8SXG7
Length = 336
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 70/182 (38%), Positives = 108/182 (59%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
LW+G L+ +M E++I + F GE + +++RNK T GY F+ F+S A +
Sbjct: 8 LWMGSLESYMTENFIIAAFRKMGEDPTTVRLMRNKYTGEPAGYCFVNFISDDHALDAMHK 67
Query: 135 FNGTQMPSTEQ--NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
NG +P T FRLN A+ + + +F+++VGDL++DV DY L + F + ++
Sbjct: 68 LNGKPIPGTNPIVRFRLNSASNSY--KLPGNEREFSVWVGDLSSDVDDYQLYKVFSSKFT 125
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK-KAA 250
S+K AKV+ D + G SKGYGFVRFG E EQ ++ +MNG + T+P++I A K K+
Sbjct: 126 SIKTAKVILD-SLGFSKGYGFVRFGIEDEQKSALYDMNGYIGLGTKPIKICNAVPKPKSE 184
Query: 251 TG 252
G
Sbjct: 185 LG 186
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 297 (109.6 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 58/163 (35%), Positives = 97/163 (59%)
Query: 158 ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFG 217
+++Q D ++++GDLA DVTD L F+ Y SV+ A+V+ D TG S+GYGFV+F
Sbjct: 104 QQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFA 163
Query: 218 DESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTI 277
+ E+ +++ +MNG + +P+++ K+ + Q +T + + DPNNT I
Sbjct: 164 SDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNS----QTSTIPDLTST----DPNNTAI 215
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
+V LD + + +L+T+FG YGE+ ++K+ K FV F NR
Sbjct: 216 YVSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNR 258
Score = 126 (49.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 42/141 (29%), Positives = 63/141 (44%)
Query: 70 SDGIRSLWIGDLQPWMEESYIASIF-GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
SD SL+IGDL + + + + F G S +VI + T S GYGF++F S
Sbjct: 109 SDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEK 168
Query: 129 ERVLQTFNG---TQMPSTEQN---FRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
++ L NG P N RLN T + D + I+V L + + V
Sbjct: 169 DKALIDMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDEGV 228
Query: 183 LQETFRAVYSSVKGAKVVTDR 203
LQ F A Y + K++T++
Sbjct: 229 LQTIFGA-YGEISYIKMLTNK 248
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 67/249 (26%), Positives = 135/249 (54%)
Query: 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAER 130
D R+L++G+L + E+ I +F G S K+I + T ++ Y F+EF + A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAA 63
Query: 131 VLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
L NG ++ ++ ++NWA+ + +++ D F +FVGDL+ +++ ++ F A
Sbjct: 64 ALAAMNGRKILG--KDMKVNWASTPSSQKK-DTSNHFHVFVGDLSPEISTDDVRAAF-AP 119
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
+ + A+VV D TG+SKGYGF+ F ++ + ++ +MNG R +R A K +A
Sbjct: 120 FGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSA 179
Query: 251 TGQQYQKATYQNTQGSQ--GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+ A+ ++ + ++ P+N T++ GG+ ++D +++ F +G+++ +++
Sbjct: 180 PKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFP 239
Query: 309 GKRCGFVQF 317
K FV+F
Sbjct: 240 EKGYSFVRF 248
Score = 157 (60.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 44/174 (25%), Positives = 81/174 (46%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + + + F G+ +V+++ T S+GYGFI F++ AE +Q
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 136 NGTQMPSTEQNFRLNWATY----------GAGERR--------QDDGPDFTIFVGDLAAD 177
NG + + R NWAT GA + Q + T++ G +A+
Sbjct: 159 NGQWLGGRQ--IRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASG 216
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
++D ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 217 LSDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFDSHEGAAHAIVSVNG 263
Score = 36 (17.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 216 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK--ATYQNTQGSQGENDPN 273
+G E+ +RSM +M PM P K Q Y + +Y N Q G+ PN
Sbjct: 275 WGKETADMRSMQQM--------PM---PQQNKPTYAAQPYGQWGQSYGNGQ-QMGQYVPN 322
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 71/257 (27%), Positives = 131/257 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ PNN T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQFAN 319
+++ K FV+F++
Sbjct: 242 EIRVFPDKGYSFVRFSS 258
Score = 156 (60.0 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 52/225 (23%), Positives = 93/225 (41%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 97 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNN 213
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY FVRF ++
Sbjct: 214 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAI 266
Query: 227 TEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
+NG ++ G QQ + Y T G G+
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQWGQ 311
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 8 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 67
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 124
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 125 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 183
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 184 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 243
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 244 FGQIMEIRVFPEKGYSFVRFS 264
Score = 147 (56.8 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 175 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 232
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 233 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 278
Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 60
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 61 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 115
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 116 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 164
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 74/261 (28%), Positives = 129/261 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 147 (56.8 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT + R +D P + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 140 (54.3 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 44/169 (26%), Positives = 77/169 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGD 218
+DDG T++VG+L+ DVT+ ++ + F + K K++T++ R + GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATK-KAATGQQYQKATYQNTQGSQGENDPNNTTI 277
S E R AA + G++ K + T SQ ++ N+ +
Sbjct: 62 TSNDPYCFVEFY----EHRDAAAALAAMNGRKILGKEV-KVNWATTPSSQKKDTSNHFHV 116
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
FVG L P +T + +K+ F +G++ ++ GK GFV F N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 70/255 (27%), Positives = 129/255 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQF 317
+++ K FV+F
Sbjct: 242 EIRVFPDKGYSFVRF 256
Score = 154 (59.3 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 51/225 (22%), Positives = 92/225 (40%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 97 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSN 213
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY FVRF ++
Sbjct: 214 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 227 TEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
+NG ++ G QQ + Y G G+
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQAYGQWGQ 311
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 70/255 (27%), Positives = 129/255 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQF 317
+++ K FV+F
Sbjct: 242 EIRVFPDKGYSFVRF 256
Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 51/225 (22%), Positives = 92/225 (40%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 97 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSN 213
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY FVRF ++
Sbjct: 214 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 227 TEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
+NG ++ G QQ + Y G G+
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQAYGQWGQ 311
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 70/255 (27%), Positives = 129/255 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQF 317
+++ K FV+F
Sbjct: 242 EIRVFPDKGYSFVRF 256
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 51/225 (22%), Positives = 92/225 (40%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 97 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSN 213
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY FVRF ++
Sbjct: 214 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 227 TEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
+NG ++ G QQ + Y G G+
Sbjct: 267 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQ 311
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 70/255 (27%), Positives = 129/255 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQF 317
+++ K FV+F
Sbjct: 242 EIRVFPDKGYSFVRF 256
Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 45/185 (24%), Positives = 82/185 (44%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 97 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 155
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 156 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSN 213
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY FVRF ++
Sbjct: 214 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAI 266
Query: 227 TEMNG 231
+NG
Sbjct: 267 VSVNG 271
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 69/257 (26%), Positives = 130/257 (50%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 60
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 61 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 118
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 119 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 177
Query: 244 AATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P N T++ GG+ +T+ +++ F +G+++
Sbjct: 178 ATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 237
Query: 303 HVKIPAGKRCGFVQFAN 319
+++ K F++F++
Sbjct: 238 EIRVFPDKGYSFIRFSS 254
Score = 150 (57.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 50/225 (22%), Positives = 92/225 (40%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123
V+ S D +++GDL P + I + F G +V+++ T S+GYGF+ F
Sbjct: 93 VSTQRSQDHFH-VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFF 151
Query: 124 SHAAAERVLQTFNGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPD 166
+ AE +Q G + + R NWAT Y + ++ Q +
Sbjct: 152 NKWDAENAIQQMGGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGN 209
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
T++ G + + +T+ ++++TF + + + +V D KGY F+RF ++
Sbjct: 210 CTVYCGGVTSGLTEQLMRQTF-SPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAI 262
Query: 227 TEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQGSQGE 269
+NG ++ G QQ + Y G G+
Sbjct: 263 VSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPAYGQWGQ 307
>ZFIN|ZDB-GENE-050522-502 [details] [associations]
symbol:trnau1ap "tRNA selenocysteine 1 associated
protein 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-502 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00510000047100 CTD:54952
HOGENOM:HOG000234338 HOVERGEN:HBG056959 OrthoDB:EOG44BB34
EMBL:BX530067 EMBL:BC095331 IPI:IPI00607273 RefSeq:NP_001018445.1
UniGene:Dr.107924 ProteinModelPortal:Q503H1 SMR:Q503H1
STRING:Q503H1 Ensembl:ENSDART00000052292 GeneID:553636
KEGG:dre:553636 InParanoid:Q503H1 OMA:NVTEANE NextBio:20880371
Bgee:Q503H1 Uniprot:Q503H1
Length = 314
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 64/179 (35%), Positives = 99/179 (55%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+ SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 132 LQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189
L+ NG +P + F+L+ + YG +Q + F++FV DL DV D +L E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHY 116
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
+SS K+V D G SK GFV F E EQ R++ ++ G + +R+ A+++
Sbjct: 117 HFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 121 (47.7 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 41/156 (26%), Positives = 75/156 (48%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++G+L + + + F + +V +++ D+ TG++ GYGFV D++ R +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT + ++ Y G QGE+ + ++FV L P V
Sbjct: 63 KVNG-----KPL---PGATPPKRF--KLSRSNY----GKQGES--STFSLFVSDLTPDVD 106
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQF 317
D +L F + G++V K CGFV F
Sbjct: 107 DGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSF 142
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 212 (79.7 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E + ++F G S K+IR ++ Y FIE+ ++ AA L
Sbjct: 7 KTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPG---NDPYAFIEYSNYQAATTALT 63
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
N E+ ++NWAT + + D IFVGDL+ ++ L+E F A +
Sbjct: 64 AMNKRLF--LEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAF-APFGE 120
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ ++V D T +SKGY FV F ++E ++ MNG +R +R +T+K +
Sbjct: 121 ISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN-WSTRKLPPPR 179
Query: 254 QYQKATYQNTQGSQGENDPNN 274
+ K Q G G P N
Sbjct: 180 EPSKGGGQG--GGMG-GGPGN 197
Score = 138 (53.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 63 GVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
G P +++GDL P +E + F GE + +++R+ T S+GY F+ F
Sbjct: 84 GNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSF 143
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153
V A AE +Q NG + S ++ R NW+T
Sbjct: 144 VKKAEAENAIQAMNGQWIGS--RSIRTNWST 172
Score = 95 (38.5 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 256 QKATYQNTQGSQGENDPNNTTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIPAGKRCGF 314
Q+ T++ ++ P NTT++ GG P+V +DD++ F Q+G + V++ K F
Sbjct: 205 QRHTFEEVYN---QSSPTNTTVYCGGFPPNVISDDLMHKHFVQFGPIQDVRVFKDKGFSF 261
Query: 315 VQFANR 320
++F +
Sbjct: 262 IKFVTK 267
Score = 69 (29.3 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 20/85 (23%), Positives = 41/85 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ T++VG+L + V++ +L F + VK K++ R G Y F+ + +
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTM-GPVKSCKII--REPGNDP-YAFIEYSNYQA 57
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAAT 246
++T MN L + +++ A +
Sbjct: 58 ATTALTAMNKRLFLEKEIKVNWATS 82
Score = 38 (18.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 161 QDDGPDFTIFVGDLAADV-TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRF 216
Q + T++ G +V +D ++ + F + ++ +V D KG+ F++F
Sbjct: 215 QSSPTNTTVYCGGFPPNVISDDLMHKHF-VQFGPIQDVRVFKD------KGFSFIKF 264
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 71/265 (26%), Positives = 136/265 (51%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR-----NKQTN-----FS-------EG 116
++L++G+L + E+ I +F G S K+I +++ N FS +
Sbjct: 8 KTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDP 67
Query: 117 YGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
Y F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSP 124
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
++T ++ F A + + A+VV D TTG+SKGYGFV F ++ + ++ M G
Sbjct: 125 EITTDDIRAAF-APFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 183
Query: 237 RPMRIGPAATKKAATGQQYQKATYQNTQGSQ--GENDPNNTTIFVGGLDPSVTDDILKTV 294
R +R AT+K + Q + + + + ++ P N T++ GG+ +T+ +++
Sbjct: 184 RQIRTN-WATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQT 242
Query: 295 FGQYGELVHVKIPAGKRCGFVQFAN 319
F +G+++ +++ K F++F++
Sbjct: 243 FSPFGQIMEIRVFPEKGYSFIRFSS 267
Score = 142 (55.0 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 41/173 (23%), Positives = 80/173 (46%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDD-----GP-DFTIFVGDLAADV 178
G + + R NWAT A + R D+ P + T++ G + + +
Sbjct: 177 GGQWLGGRQ--IRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGL 234
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
T++++++TF + + + +V + KGY F+RF ++ +NG
Sbjct: 235 TEHLMRQTF-SPFGQIMEIRVFPE------KGYSFIRFSSHESAAHAIVSVNG 280
Score = 125 (49.1 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 44/171 (25%), Positives = 77/171 (45%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+D+ T++VG+L+ DVT+ ++ + F + K K++T+++ S+ G
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQI-GPCKSCKMITEQSDS-SRKMNSSSIGFSV 59
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAA-TGQQYQ----KATYQNTQGSQGENDPNNT 275
Q S N C AA AA G++ K + T SQ ++ N+
Sbjct: 60 LQHTS----NDPYCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF 115
Query: 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
+FVG L P +T D ++ F +G++ ++ GK GFV F N+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNK 166
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 241 (89.9 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 68/211 (32%), Positives = 103/211 (48%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R L++G+L + E + F G + K++ +K N + Y F+E+ A LQ
Sbjct: 75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQ 133
Query: 134 TFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T NG Q+ E N ++NWA + + + DD F +FVGDL +V D L+ F+ S
Sbjct: 134 TLNGKQI---ENNIVKINWA-FQSQQSSSDD--TFNLFVGDLNVNVDDETLRNAFKDFPS 187
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
+ G V+ D TG S+GYGFV F + + +M M G + RP+RI AA +
Sbjct: 188 YLSG-HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNN 246
Query: 253 QQYQ-KATYQNTQ--GSQGENDPNNTTIFVG 280
YQ + Y N G + N NN + +G
Sbjct: 247 NNYQQRRNYGNNNRGGFRQYNSNNNNNMNMG 277
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+SSD +L++GDL +++ + + F ++SG V+ + QT S GYGF+ F S
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWA 152
A+ + + G + + R+NWA
Sbjct: 216 AQNAMDSMQGQDLNG--RPLRINWA 238
Score = 54 (24.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 272 PNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQF 317
P TT ++G + T+ L +F +G ++ K K C F+++
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKY 383
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 245 (91.3 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 71/205 (34%), Positives = 102/205 (49%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
L++G+L E I +F G V I N + Y FIE+ ++ A+ L T
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 136 NGTQMPSTEQNFRLNWATYGA---GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
NG + E ++NWA A G + P F IFVGDL+ +V D L+ F + +
Sbjct: 141 NGRLVDDVE--IKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAF-SKFE 197
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV-LCSTRPMRIGPAATKKAAT 251
S+K A V+ D T RS+GYGFV FG++S+ ++ MNG LC R +R A+ K
Sbjct: 198 SLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCG-RAIRCNWASHK---- 252
Query: 252 GQQYQKATYQNTQG---SQGENDPN 273
QQ Q+ Y N G S+G + N
Sbjct: 253 -QQQQQQHYNNQHGGGYSRGYRNNN 276
Score = 125 (49.1 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/96 (28%), Positives = 52/96 (54%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P+ + + + ++++GDL P + + + + F V+ + QT+ S GYGF+ F +
Sbjct: 165 PNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQ 224
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ 161
+ AE LQT NG + + R NWA++ +++Q
Sbjct: 225 SDAELALQTMNGEWLCG--RAIRCNWASHKQQQQQQ 258
Score = 47 (21.6 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQF 317
TT+++G + L + +G +V K + C FV++
Sbjct: 412 TTVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKY 454
Score = 39 (18.8 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 209 KGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+G FV++ ++ ++ G + RP++ G
Sbjct: 447 RGCAFVKYDTHERAALAIIQLAGFNLNGRPLKCG 480
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 222 (83.2 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 58/179 (32%), Positives = 89/179 (49%)
Query: 116 GYGFIEFVSHAAAERVLQ------------TFNGTQMPSTEQNFRLNWATYGAGERRQDD 163
GY F+EF + A+ L T N P+ ++ FRLNWA+ +
Sbjct: 129 GYCFVEFETQKDAKFALSLNATPLPNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPS 188
Query: 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223
P+F++FVGDL+ T+ L F+ + SVK +V+TD TG S+ +GFVRFGDE E+
Sbjct: 189 TPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERR 248
Query: 224 RSMTEMNGVLCSTRPMRIGPAATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFV 279
R++ EM+G R +R+ A + Q Q Q+ Q Q + + NN + +
Sbjct: 249 RALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLI 307
Score = 150 (57.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 35/96 (36%), Positives = 50/96 (52%)
Query: 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDP 284
+M +N L + PM + TY NT DP NTT+FVGGL P
Sbjct: 319 NMLPLNA-LHNAPPMHLNEGGISNMRVNDSLPSNTY-NT-------DPTNTTVFVGGLVP 369
Query: 285 SVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
T+ L+++F +G +++V+IP GK CGFV+F R
Sbjct: 370 KTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKR 405
Score = 73 (30.8 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ 110
+ S++ R+LW+GDL P +E+ I I+ + V K+IR K+
Sbjct: 27 ETSTEPPRTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKK 70
Score = 70 (29.7 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR---NKQTNFSEGYGFIEFVSHAAAERV 131
SL++GDL P E+ + S+F T F S K +R + T S +GF+ F R
Sbjct: 193 SLFVGDLSPTATEADLLSLF-QT-RFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250
Query: 132 LQTFNG 137
L +G
Sbjct: 251 LIEMSG 256
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 185 (70.2 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 60/216 (27%), Positives = 105/216 (48%)
Query: 112 NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT 168
N S+GYGF+ F + AAER ++ NG + + + F + + ER + G +FT
Sbjct: 103 NGSKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGARAKEFT 159
Query: 169 -IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
+++ + D+ D L++ F + KV+TD + G+SKG+GFV F + +++
Sbjct: 160 NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 217
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
EMNG + + + +G A KK + ++ Q Q N ++V LD +
Sbjct: 218 EMNGKELNGKQIYVG-RAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGID 274
Query: 288 DDILKTVFGQYGELVHVKI--PAG--KRCGFVQFAN 319
D+ L+ F +G + K+ G K GFV F++
Sbjct: 275 DERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSS 310
Score = 164 (62.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 170 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 228
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 229 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 287
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 288 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 340
Score = 115 (45.5 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 27/71 (38%), Positives = 38/71 (53%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFN 136
A AER L T N
Sbjct: 63 ADAERALDTMN 73
Score = 112 (44.5 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 35/125 (28%), Positives = 60/125 (48%)
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
S++ + VV D G SKGYGFV F + R++ +MNG+L + R + +G ++K
Sbjct: 92 SLRKSGVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---- 145
Query: 253 QQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI---PAG 309
+ G T +++ + D+ LK +FG++G + VK+ +G
Sbjct: 146 ---------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 196
Query: 310 KRCGF 314
K GF
Sbjct: 197 KSKGF 201
Score = 38 (18.4 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 461 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 512
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 218 (81.8 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 56/173 (32%), Positives = 89/173 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL + E+ + IF G S +V R+ T S GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + Q RL W+ R+ G IFV +L + + L +TF +++ ++
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTG---NIFVKNLDKSIDNKALFDTF-SMFGNI 130
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
KV TD G+SK YGFV + DE ++ ++NGV ++ + +GP K
Sbjct: 131 LSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 28/107 (26%), Positives = 57/107 (53%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+++ +L + D +L+E F + ++ AKV+ D +SKG+GFV F + E +++TE
Sbjct: 452 LYIKNLDDGIDDIMLRELFEP-FGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275
M+ + + +P+ +G A ++ + Q+ + N+P NT
Sbjct: 510 MHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHHM--NNPLNT 554
Score = 65 (27.9 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 264 QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH--VKIPAGKR--CGFVQFAN 319
+ + ND T ++V SVT+ L+ +F YGE+ VK+ R C F+ +A+
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFC-FINYAD 240
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ + + E+++ +F GE S V K N + + FI + +A+ +
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNAMDN 250
Query: 135 FNGTQMPSTEQ 145
NG ++ Q
Sbjct: 251 LNGKKITDDGQ 261
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 218 (81.8 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 56/173 (32%), Positives = 89/173 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL + E+ + IF G S +V R+ T S GY ++ + + A AER L T
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + Q RL W+ R+ G IFV +L + + L +TF +++ ++
Sbjct: 77 LNYTNIKG--QPARLMWSHRDPSLRKSGTG---NIFVKNLDKSIDNKALFDTF-SMFGNI 130
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
KV TD G+SK YGFV + DE ++ ++NGV ++ + +GP K
Sbjct: 131 LSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKK 182
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 28/107 (26%), Positives = 57/107 (53%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+++ +L + D +L+E F + ++ AKV+ D +SKG+GFV F + E +++TE
Sbjct: 452 LYIKNLDDGIDDIMLRELFEP-FGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275
M+ + + +P+ +G A ++ + Q+ + N+P NT
Sbjct: 510 MHLKIINGKPLYVGLAEKREQRLSRLQQRFRMHPIRHHM--NNPLNT 554
Score = 65 (27.9 bits), Expect = 7.3e-21, Sum P(2) = 7.3e-21
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 264 QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH--VKIPAGKR--CGFVQFAN 319
+ + ND T ++V SVT+ L+ +F YGE+ VK+ R C F+ +A+
Sbjct: 182 KSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFC-FINYAD 240
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ + + E+++ +F GE S V K N + + FI + +A+ +
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIV---KMDNKNRKFCFINYADAESAKNAMDN 250
Query: 135 FNGTQMPSTEQ 145
NG ++ Q
Sbjct: 251 LNGKKITDDGQ 261
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 249 (92.7 bits), Expect = 2.4e-20, P = 2.4e-20
Identities = 71/263 (26%), Positives = 132/263 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV+ N+ S G+GF+ F +H
Sbjct: 91 PGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD-GP---DFT-IFVGDLAADVTD 180
AA++ + T NG + + ++ + + ++R+ + G FT I+V +L D+ +
Sbjct: 149 EAAQKAINTMNGMLL----NDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDE 204
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
LQ+ F + + + KV+ D + G+S+G+GF+ F E +++ MNG S + +
Sbjct: 205 QGLQDLF-SQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLY 262
Query: 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300
+G A +K A Q K ++ + + +N ++V LD S+ DD LK VF YG
Sbjct: 263 VGRA--QKRAERQNELKRRFEQMK-QERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGV 319
Query: 301 LVHVKIPA----GKRCGFVQFAN 319
+ K+ K GFV F++
Sbjct: 320 ITSAKVMTESSHSKGFGFVCFSS 342
Score = 207 (77.9 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 55/170 (32%), Positives = 88/170 (51%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL++GDL P + E+ + +F G +S +V R+ T S GY +I F A AER L
Sbjct: 10 LSSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + Q R+ W+ G RR G IF+ +L + + L +TF + +
Sbjct: 70 DTMNFEMIKG--QPIRIMWSHRDPGLRRSGMG---NIFIKNLENSIDNKALYDTF-STFG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
S+ +KVV + G S+G+GFV F +++ MNG+L + R + +G
Sbjct: 124 SILSSKVVYNEH-G-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVG 171
Score = 198 (74.8 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 56/200 (28%), Positives = 97/200 (48%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G ++++ +L+ M+E + +F G+ S KV+R+ S G+GFI F H A++
Sbjct: 189 GFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ-SRGFGFINFEKHEEAQKA 247
Query: 132 LQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTD 180
+ NG ++ E+ L + RQ+ ++V +L + D
Sbjct: 248 VDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
L+E F + Y + AKV+T+ + SKG+GFV F E +++TEMNG + T+P+
Sbjct: 308 DRLKEVF-STYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 241 IGPAATK---KAATGQQYQK 257
+ A K KA QY++
Sbjct: 365 VALAQRKEERKAILTNQYRR 384
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 197 (74.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L ++T
Sbjct: 69 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRNMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
Score = 61 (26.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 265 GSQGENDPNNTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GF 314
G G N P N + IF+ L + IL +FG +G + +VK+ +C GF
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 315 VQFAN 319
V N
Sbjct: 290 VTMTN 294
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 197 (74.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 69 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMF-SPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
Score = 61 (26.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 265 GSQGENDPNNTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GF 314
G G N P N + IF+ L + IL +FG +G + +VK+ +C GF
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 315 VQFAN 319
V N
Sbjct: 290 VTMTN 294
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 248 (92.4 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 72/262 (27%), Positives = 131/262 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G+ +S KV+ ++ S GYGF+ F +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA R +QT NG + + + F ++ + ER + G +FT +++ + D+ D
Sbjct: 149 EAANRAIQTMNGMLL-NDRKVFVGHFKS--RRERELEYGAKVMEFTNVYIKNFGEDMDDK 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F A + + KV+ D + GRS+G+GFV +G+ E +++TEMNG + R + +
Sbjct: 206 RLKEIFSA-FGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A + G+ +K ++ + + N ++V LD + DD L+ F YG +
Sbjct: 264 GRAQKRIERQGELKRK--FEQIK-QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSTKVMTEGGHSKGFGFVCFSS 342
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 56/170 (32%), Positives = 86/170 (50%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL+IGDL P + E+ + F G +S +V R+ T S GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+ KVV D G S+GYGFV F + R++ MNG+L + R + +G
Sbjct: 124 DILSCKVVCDEY-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Score = 162 (62.1 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 50/187 (26%), Positives = 88/187 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
M++ + IF G +S KV+ + S G+GF+ + +H A++ + NG ++
Sbjct: 202 MDDKRLKEIFSAFGNTLSVKVMMDNSGR-SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRM 260
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R + ++V +L + D L++ F + Y +
Sbjct: 261 VYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF-SPYGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
+ KV+T+ G SKG+GFV F E +++TEMNG + ST+P+ + A K KA
Sbjct: 320 ITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Query: 251 TGQQYQK 257
QY +
Sbjct: 378 LTNQYMQ 384
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 201 (75.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 54/197 (27%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 105 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 157
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 158 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 246 TKKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 217 NPSQKTSQALLSQLYQS 233
Score = 61 (26.5 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 322 DFNTNKCKGFGFVTMTN 338
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 247 (92.0 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 73/262 (27%), Positives = 130/262 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F +H
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA R +QT NG + + + F ++ + ER + G +FT +++ + D+ D
Sbjct: 149 EAANRAIQTMNGMLL-NDRKVFVGHFKS--RRERELEYGAKVMEFTNVYIKNFGEDMDDK 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F A + + KV+ D +GRS+G+GFV +G+ E ++++EMNG + R + +
Sbjct: 206 RLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + N ++V LD + DD L+ F YG +
Sbjct: 264 GRA--QKRIERQSELKRKFEQIK-QERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 198 (74.8 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 55/170 (32%), Positives = 85/170 (50%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL+IGDL P + E+ + F G +S +V R+ T S Y +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
++ KVV D G S+GYGFV F R++ MNG+L + R + +G
Sbjct: 124 NILSCKVVCDEH-G-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVG 171
Score = 166 (63.5 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
M++ + IF G +S KV+ + + S G+GF+ + +H A++ + NG ++
Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R + ++V +L + D L++ F Y +
Sbjct: 261 IYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLP-YGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
+ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ + A K KA
Sbjct: 320 ITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Query: 251 TGQQYQK 257
QY +
Sbjct: 378 LTNQYMQ 384
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 246 (91.7 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 72/262 (27%), Positives = 130/262 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA R +QT NG + + + F ++ + ER + G +FT +++ + D+ D
Sbjct: 149 EAANRAIQTMNGMLL-NDRKVFVGHFKS--RRERELEYGAKVMEFTNVYIKNFGEDMDDK 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F A + + KV+ D TGRS+G+GFV +G+ E ++++EMNG + R + +
Sbjct: 206 RLREIFSA-FGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A + G+ +K ++ + + N ++V LD + DD L+ F YG +
Sbjct: 264 GRAQKRIERQGELKRK--FEQIK-QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 55/170 (32%), Positives = 87/170 (51%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
++ KVV D G S+GYGFV F + R++ MNG+L + R + +G
Sbjct: 124 NILSCKVVCDEH-G-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVG 171
Score = 171 (65.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 52/187 (27%), Positives = 90/187 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
M++ + IF G +S KV+ + T S G+GF+ + +H A++ + NG ++
Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R + ++V +L + D L++ F + Y +
Sbjct: 261 IYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEF-SPYGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
+ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ + A K KA
Sbjct: 320 ITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Query: 251 TGQQYQK 257
QY +
Sbjct: 378 LTNQYMQ 384
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 195 (73.7 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 69 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
Score = 61 (26.5 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 265 GSQGENDPNNTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GF 314
G G N P N + IF+ L + IL +FG +G + +VK+ +C GF
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 289
Query: 315 VQFAN 319
V N
Sbjct: 290 VTMTN 294
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 245 (91.3 bits), Expect = 5.9e-20, P = 5.9e-20
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL+P + E+++ IF G S +V R+ T S GY ++ F H A + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ +
Sbjct: 99 LNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDI 152
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ- 253
+K+ TD G+SKG+GFV F +E ++ +NG+L + + + + P ++K Q
Sbjct: 153 LSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 254 QYQKATYQN 262
+ KA Y N
Sbjct: 212 EETKAHYTN 220
Score = 195 (73.7 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 60/256 (23%), Positives = 113/256 (44%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G+ +S K+ ++ S+G+GF+ F
Sbjct: 118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEE 176
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA+ + NG + E + + + ++ +T ++V ++ ++ TD Q
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F A + + A + D G+ KG+GFV + + ++++ +N + + +G A
Sbjct: 237 ELF-AKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294
Query: 245 ATKKA---ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY+ + QG N +FV LD SV D+ L+ F YG +
Sbjct: 295 QKKNERMHVLKKQYEAYRLEKMAKYQGVN------LFVKNLDDSVDDEKLEEEFAPYGTI 348
Query: 302 VHVKIPA---GKRCGF 314
K+ GK GF
Sbjct: 349 TSAKVMRTENGKSKGF 364
Score = 148 (57.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 48/202 (23%), Positives = 95/202 (47%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ ++ + +F G VS + ++ +G+GF+ + H A + ++
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEA 278
Query: 135 FNGTQMP--------STEQNFRLN-----WATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
N +++ + ++N R++ + Y + + G + +FV +L V D
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN--LFVKNLDDSVDDE 336
Query: 182 VLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
L+E F A Y ++ AKV+ RT G+SKG+GFV F E +++TE N + + +P+
Sbjct: 337 KLEEEF-APYGTITSAKVM--RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY 393
Query: 241 IGPAATKKAATGQQYQKATYQN 262
+ A K Q Q+ +N
Sbjct: 394 VAIAQRKDVRRSQLAQQIQARN 415
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 195 (73.7 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 17 MAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 76
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 77 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 129
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 130 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 185
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 186 PITVKFAANPNQ 197
Score = 61 (26.5 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 265 GSQGENDPNNTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GF 314
G G N P N + IF+ L + IL +FG +G + +VK+ +C GF
Sbjct: 238 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 297
Query: 315 VQFAN 319
V N
Sbjct: 298 VTMTN 302
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 240 (89.5 bits), Expect = 8.8e-20, P = 8.8e-20
Identities = 56/191 (29%), Positives = 95/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+ S+ R+L++ +L P + + ++A++F G + K+I ++ Y F+EF H
Sbjct: 34 SGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQ 90
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWA--TYGAGERRQ--DDGPDFTIFVGDLAADVTDYVL 183
A LQ+ NG ++ E+ + WA GE R + F +FVGDL +++ L
Sbjct: 91 ATLALQSHNGREL--LEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKL 148
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F + V AK++ D T + KGYGFV + + R++ EMNG R +R
Sbjct: 149 REAF-VKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Query: 244 AATKKAATGQQ 254
A K G++
Sbjct: 208 ATRKPDEDGER 218
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 197 (74.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 100 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 152
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 153 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 212 NPSQKSSQALLSQLYQS 228
Score = 61 (26.5 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 317 DFNTNKCKGFGFVTMTN 333
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 197 (74.4 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 100 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 152
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 153 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 212 NPSQKSSQALLSQLYQS 228
Score = 61 (26.5 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 257 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 316
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 317 DFNTNKCKGFGFVTMTN 333
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 244 (91.0 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 74/248 (29%), Positives = 124/248 (50%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL+ GDL P + E+++ +F H VS +V R+ Q S GY +I F + A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P ++ R+ + R G IF+ +L A + + L ETF + + ++
Sbjct: 109 LNYT--PLFDRPIRIMLSNRDPSTRLSGKG---NIFIKNLDASIDNKALFETFSS-FGTI 162
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D TGRSKGYGFV+F E ++ ++NG+L + + + +G ++
Sbjct: 163 LSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ------ 215
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAGK- 310
++A +NT P T ++V L + +D L+ FG++G + V ++ +G
Sbjct: 216 -ERARDENTP------TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS 268
Query: 311 RC-GFVQF 317
RC GFV F
Sbjct: 269 RCFGFVNF 276
Score = 208 (78.3 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 69/266 (25%), Positives = 128/266 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV + T S+GYGF++F
Sbjct: 128 PSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKE 186
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG---PDFT-IFVGDLAADVTDY 181
+A+ + NG M + +Q F ++ ER +D+ P FT ++V +L ++ +
Sbjct: 187 ESAQAAIDKLNGMLM-NDKQVFVGHFIR--RQERARDENTPTPRFTNVYVKNLPKEIGED 243
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L++TF + + A V+ D++ G S+ +GFV F ++ +MNG+ + +
Sbjct: 244 ELRKTF-GKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301
Query: 242 GPAATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K + ++++ + SQG N +++ LD SV D+ LK +F +Y
Sbjct: 302 GRAQKKSEREEELRRKFEQERINRFEKSQGAN------LYLKNLDDSVDDEKLKEMFSEY 355
Query: 299 GELVHVKI---PAG--KRCGFVQFAN 319
G + K+ P G + GFV ++N
Sbjct: 356 GNVTSSKVMLNPQGMSRGFGFVAYSN 381
Score = 148 (57.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 47/187 (25%), Positives = 87/187 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L + E + FG G S V+R++ N S +GF+ F AA ++
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 135 FNGTQM-------------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
NG + E+ R + + G + +++ +L V D
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN--LYLKNLDDSVDDE 346
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + Y +V +KV+ + G S+G+GFV + + E LR+++EMNG + +P+ I
Sbjct: 347 KLKEMF-SEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Query: 242 GPAATKK 248
A K+
Sbjct: 405 ALAQRKE 411
Score = 39 (18.8 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 237 RPMRIGPA-ATKKAATG-QQY-QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKT 293
R + GP ++ AT QQ+ Q+ + S G N + G+D SV IL
Sbjct: 492 RQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPP 551
Query: 294 V 294
+
Sbjct: 552 I 552
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 197 (74.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 93 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 205 NPSQKSSQALLSQLYQS 221
Score = 61 (26.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 260 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 319
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 320 KVIRDFNTNKCKGFGFVTMTN 340
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 197 (74.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 93 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 205 NPSQKSSQALLSQLYQS 221
Score = 61 (26.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 260 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 319
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 320 KVIRDFNTNKCKGFGFVTMTN 340
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 197 (74.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 40 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 100 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 152
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 153 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 211
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 212 NPSQKSSQALLSQLYQS 228
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 267 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 326
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTN 347
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 195 (73.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 36 MAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 95
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 96 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 148
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 149 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 204
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 205 PITVKFAANPNQ 216
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 265 GSQGENDPNNTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GF 314
G G N P N + IF+ L + IL +FG +G + +VK+ +C GF
Sbjct: 257 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGF 316
Query: 315 VQFAN 319
V N
Sbjct: 317 VTMTN 321
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 197 (74.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 56 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 115
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 116 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 168
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 169 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 227
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 228 NPSQKSSQALLSQLYQS 244
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 273 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 332
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 333 DFNTNKCKGFGFVTMTN 349
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 197 (74.4 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 44 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 103
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 104 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 156
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 157 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 215
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 216 NPSQKSSQALLSQLYQS 232
Score = 61 (26.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 271 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 330
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 331 KVIRDFNTNKCKGFGFVTMTN 351
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 197 (74.4 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 105 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 157
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 158 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 216
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 217 NPSQKSSQALLSQLYQS 233
Score = 61 (26.5 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 272 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 331
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 332 KVIRDFNTNKCKGFGFVTMTN 352
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 196 (74.1 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 94 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 145
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 205
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 206 PSQKTNQAILSQLYQS 221
Score = 60 (26.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 198 (74.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ +V A
Sbjct: 62 TEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 122 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 173
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 174 SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANN 233
Query: 247 KKAATGQQYQKATYQN 262
T Q Y +
Sbjct: 234 PSQKTNQAILSQLYHS 249
Score = 60 (26.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 355
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 196 (74.1 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 94 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 145
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 205
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 206 PSQKTNQAILSQLYQS 221
Score = 60 (26.2 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 327
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 196 (74.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 62 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 122 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 173
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 174 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 234 PSQKTNQAILSQLYQS 249
Score = 60 (26.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 354
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 196 (74.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 123 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 174
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 234
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 235 PSQKTNQAILSQLYQS 250
Score = 60 (26.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 356
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 196 (74.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 63 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 123 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 174
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 234
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 235 PSQKTNQAILSQLYQS 250
Score = 60 (26.2 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 355
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 195 (73.7 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 52/199 (26%), Positives = 98/199 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P+ S D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
AE+ + T NG ++ + + ++++A + R D ++V L +T L++
Sbjct: 120 KDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQ 172
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGP 243
F + + + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ +
Sbjct: 173 LF-SQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKF 231
Query: 244 AATKKAATGQQYQKATYQN 262
A + Q YQ+
Sbjct: 232 ANNPSQKSSQALLSHLYQS 250
Score = 60 (26.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P +++L +FG +G + +VK+ +C GFV N
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 355
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 193 (73.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 106 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 157
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 158 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN 217
Query: 247 KKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 218 PSQKSSQALLSQLYQS 233
Score = 61 (26.5 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 262 KRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 322 DFNTNKCKGFGFVTMTN 338
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 193 (73.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144
M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 145 QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204
+ ++++A + R D ++V L +T L++ F + Y + ++++ D+
Sbjct: 108 KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQV 161
Query: 205 TGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAATKKAATGQQYQKATYQN 262
TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 104 (41.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223
G + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E
Sbjct: 273 GTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331
Query: 224 RSMTEMNGVLCSTRPMRI 241
++ +NG R +++
Sbjct: 332 MAIASLNGYRLGDRVLQV 349
Score = 100 (40.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS IR +L++ L M + + +F G ++ +++ ++ T S G GFI F
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE ++ NG + P + + +A
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 60 (26.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 193 (73.0 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 49/180 (27%), Positives = 90/180 (50%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144
M + + S+FG GE S K++R+K T S GYGF+ ++ AE+ + T NG ++ +
Sbjct: 50 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT-- 107
Query: 145 QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204
+ ++++A + R D ++V L +T L++ F + Y + ++++ D+
Sbjct: 108 KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQV 161
Query: 205 TGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAATKKAATGQQYQKATYQN 262
TG S+G GF+RF E ++ +NG +T P+ + A T Q YQ+
Sbjct: 162 TGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQS 221
Score = 104 (41.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223
G + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E
Sbjct: 273 GTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 331
Query: 224 RSMTEMNGVLCSTRPMRI 241
++ +NG R +++
Sbjct: 332 MAIASLNGYRLGDRVLQV 349
Score = 100 (40.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS IR +L++ L M + + +F G ++ +++ ++ T S G GFI F
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE ++ NG + P + + +A
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFA 203
Score = 60 (26.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 194 (73.4 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 52/197 (26%), Positives = 95/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
++ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 82 SNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 141
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 142 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 194
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S P+ + A
Sbjct: 195 -SQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFAN 253
Query: 246 TKKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 254 NPSQKTSQALLSQLYQS 270
Score = 62 (26.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 253 QQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
+++ T + G N P +T IFV L P + +L +FG +G + +VK+
Sbjct: 299 KRFSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 358
Query: 309 G---KRC---GFVQFAN 319
+C GFV N
Sbjct: 359 DFNTNKCKGFGFVTMTN 375
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 193 (73.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 101 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 152
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 153 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN 212
Query: 247 KKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 213 PSQKSSQALLSQLYQS 228
Score = 61 (26.5 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 267 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 326
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 327 KVIRDFNTNKCKGFGFVTMTN 347
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 193 (73.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 106 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 157
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 158 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANN 217
Query: 247 KKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 218 PSQKSSQALLSQLYQS 233
Score = 61 (26.5 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNT----TIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+A ++ T G N P +T IFV L P + +L +FG +G + +V
Sbjct: 272 SACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNV 331
Query: 305 KIPAG---KRC---GFVQFAN 319
K+ +C GFV N
Sbjct: 332 KVIRDFNTNKCKGFGFVTMTN 352
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 216 (81.1 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 156 (60.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 47/175 (26%), Positives = 81/175 (46%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + FG G +S KV+ + S G+GF+ F H A++ + NG +
Sbjct: 202 MDDERLKEWFGQYGAALSVKVMTDDHGK-SRGFGFVSFERHEDAQKAVDDMNGKDLNGKA 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + S
Sbjct: 261 IFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTP-FGS 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 144 (55.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 44/149 (29%), Positives = 70/149 (46%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKIPA---GKRCGF 314
+ LK FGQYG + VK+ GK GF
Sbjct: 205 ERLKEWFGQYGAALSVKVMTDDHGKSRGF 233
Score = 44 (20.5 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +NTQ +Q + + V G +P
Sbjct: 491 RPTTAAAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAMQQPAVHVQGQEP 542
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 66/254 (25%), Positives = 127/254 (50%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G+ +++I +L ++ + +F G +S KV+ + N S+GY ++ F S AAA R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRA 161
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
+ NG ++ + + R + A E R D FT +FV + D+ D L+E F
Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSG 221
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y + KV+ D +G+SKG+GFVR+ +++ +++G + + + +G A K
Sbjct: 222 -YGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIE 279
Query: 250 ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVK 305
+ ++ ++ + + ++ P I++ LD ++ D+ LK F +G + V V+
Sbjct: 280 RLAELRRR--FERLRLKE-KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
Query: 306 IPAGKRCGFVQFAN 319
+ GK G V F++
Sbjct: 337 VGQGKGFGVVCFSS 350
Score = 174 (66.3 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 60/227 (26%), Positives = 103/227 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++GDL P + E + F G ++ R+ T GYG++ F A AE L T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + FRL W+ +R + G IF+ +L + + L F A + ++
Sbjct: 79 MNFDLING--KPFRLMWSQ--PDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSA-FGNI 132
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG--PAATKKAATG 252
KVV D G SKGY +V F + R++ MNGV + R + +G ++AA
Sbjct: 133 LSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEV 190
Query: 253 QQYQKATYQNTQGSQGENDPNNTTI--FVGGLDPSVTDDILKTVFGQ 297
+ +AT+ N ND ++ + G P+ + +++ G+
Sbjct: 191 RTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGK 237
Score = 138 (53.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 42/168 (25%), Positives = 80/168 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL-----QTFNGTQ 139
M++ + IF G S KVIR+ S+G+GF+ + +H AA++ + ++ NG
Sbjct: 210 MDDEKLKEIFSGYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSINGKV 268
Query: 140 M------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
+ E+ L + + P I++ +L + D L+E F + + S
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSS-FGS 327
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ AKV+ + G+ KG+G V F + +++ EMNG ++P+ +
Sbjct: 328 ISRAKVMVE--VGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHV 373
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 228 (85.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 65/254 (25%), Positives = 127/254 (50%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G+ +++I +L ++ + +F G +S KV+ + N S+GY ++ F S AAA R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRA 161
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
+ NG ++ + + R + A E R D FT +FV ++ D+ D L+E F
Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-C 220
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y + KV+ D +G+SKG+GFVR+ +++ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Query: 250 ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVK 305
+ ++ ++ + + ++ P I++ LD ++ D+ LK F +G + V ++
Sbjct: 280 RLAELRRR--FERLRLKE-KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME 336
Query: 306 IPAGKRCGFVQFAN 319
+ GK G V F++
Sbjct: 337 VGQGKGFGVVCFSS 350
Score = 167 (63.8 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 55/190 (28%), Positives = 89/190 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++GDL P + E + F G ++ R+ T GYG++ F A AE L T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + FRL W+ +R + G IF+ +L + + L F A + ++
Sbjct: 79 MNFDLING--KPFRLMWSQ--PDDRLRKSGVG-NIFIKNLDKSIDNRALFYLFSA-FGNI 132
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG--PAATKKAATG 252
KVV D G SKGY +V F + R++ MNGV + R + +G ++AA
Sbjct: 133 LSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEV 190
Query: 253 QQYQKATYQN 262
+ +AT+ N
Sbjct: 191 RTRDRATFTN 200
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 40/168 (23%), Positives = 79/168 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
+++ + +F G S KVIR+ S+G+GF+ + +H AA++ + +G +
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + + P I++ +L + D L+E F + + S
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSS-FGS 327
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ AKV+ + G+ KG+G V F E +++ EMNG + ++P+ +
Sbjct: 328 ISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 373
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 227 (85.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 66/254 (25%), Positives = 128/254 (50%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
GI +++I +L ++ + +F G +S KV+ + N S+GY ++ F S AAA R
Sbjct: 104 GIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDD--NGSKGYAYVHFDSLAAANRA 161
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
+ NG ++ + + R + A E R D FT +FV + D+ D L+E F +
Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELF-S 220
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y + KV+ D ++G+SKG+GFVR+ +++ +++G + + +G A K
Sbjct: 221 EYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIE 279
Query: 250 ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVK 305
+ ++ ++ + + ++ P I++ LD ++ D+ LK F +G + V V+
Sbjct: 280 RLAELRRR--FERLRLKE-KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE 336
Query: 306 IPAGKRCGFVQFAN 319
+ GK G + F++
Sbjct: 337 VGQGKGFGVICFSS 350
Score = 172 (65.6 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 57/190 (30%), Positives = 88/190 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++GDL P + E + F G ++ R+ T GYG++ F A AE L T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + FRL W+ R+ G IF+ +L + + L F A + S+
Sbjct: 79 MNFDLING--KPFRLMWSQPDDRLRKSGIG---NIFIKNLDKSIDNRALFYLFSA-FGSI 132
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG--PAATKKAATG 252
KVV D G SKGY +V F + R++ MNGV + R + +G ++AA
Sbjct: 133 LSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEV 190
Query: 253 QQYQKATYQN 262
+ KAT+ N
Sbjct: 191 RTRDKATFTN 200
Score = 143 (55.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 40/168 (23%), Positives = 80/168 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
M++ + +F G S KVIR+ S+G+GF+ + +H AA++ + +G +
Sbjct: 210 MDDDKLKELFSEYGPTESVKVIRDSSGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 268
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + + P I++ +L + D L+E F + + S
Sbjct: 269 LYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKEEFSS-FGS 327
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ AKV+ + G+ KG+G + F E +++ EMNG + ++P+++
Sbjct: 328 ISRAKVMVE--VGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQV 373
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 226 (84.6 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 66/254 (25%), Positives = 126/254 (49%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G+ +++I +L ++ + +F G +S KV+ + N S+GY ++ F S AAA R
Sbjct: 104 GVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRA 161
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
+ NG ++ + + R + A E R D FT +FV + D+ D L++ F +
Sbjct: 162 IWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLF-S 220
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y + KV+ D TG+SKG+GFVR+ +++ E++G + + +G A K
Sbjct: 221 EYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIE 279
Query: 250 ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVK 305
+ ++ ++ + + + P I++ LD ++ D+ LK F +G + V ++
Sbjct: 280 RLAELRRR--FERLK-LKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME 336
Query: 306 IPAGKRCGFVQFAN 319
+ GK G V F++
Sbjct: 337 VGQGKGFGVVCFSS 350
Score = 166 (63.5 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 55/190 (28%), Positives = 88/190 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++GDL P + E + F G ++ R+ T GYG++ F A AE L T
Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + FRL W+ R+ G IF+ +L + + L F A + ++
Sbjct: 79 MNFDLING--KPFRLMWSQPDDHLRKSGVG---NIFIKNLDKSIDNRALFYLFSA-FGNI 132
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG--PAATKKAATG 252
KVV D G SKGY +V F + R++ MNGV + R + +G ++AA
Sbjct: 133 LSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEV 190
Query: 253 QQYQKATYQN 262
+ +AT+ N
Sbjct: 191 RTRDRATFTN 200
Score = 132 (51.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 42/168 (25%), Positives = 81/168 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144
+++ + +F G S KVIR+ T S+G+GF+ + +H AA++ + +G +
Sbjct: 210 IDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKV 268
Query: 145 QNF-RLNWATYGAGE-RRQDDG---------PDFTIFVGDLAADVTDYVLQETFRAVYSS 193
R E RR+ + P I++ +L + D L+E F +++ S
Sbjct: 269 LCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETINDEKLKEEF-SLFGS 327
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ AKV+ + G+ KG+G V F E +++ EMNG + ++ + +
Sbjct: 328 ISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHV 373
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 216 (81.1 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 213 (80.0 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 66/255 (25%), Positives = 122/255 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GYGF+ F +
Sbjct: 91 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AAER ++ NG + + + F + + ER + G +FT +++ + D+ D
Sbjct: 149 EAAERAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGARAKEFTNVYIKNFGEDMDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L++ F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +
Sbjct: 206 RLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A KK + ++ Q Q N ++V LD + D+ L+ F +G +
Sbjct: 264 G-RAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTI 320
Query: 302 VHVKI--PAGKRCGF 314
K+ G+ GF
Sbjct: 321 TSAKVMMEGGRSKGF 335
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 46/188 (24%), Positives = 87/188 (46%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATKKAATG 252
+ AKV+ + GRSKG+GFV F +++ S+ + N V+ +P P+ AA
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFS-YMQRMASVRAVPNPVINPYQPAP--PSGYFMAAIP 374
Query: 253 QQYQKATY 260
Q +A Y
Sbjct: 375 QTQNRAAY 382
Score = 38 (18.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 453 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 504
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 73/264 (27%), Positives = 128/264 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G VS KV + S+GYGF+++ +
Sbjct: 116 PSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANE 174
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-----DGPDFT-IFVGDLAADVT 179
+A++ ++ NG + + +Q + G RRQ+ + FT ++V +LA T
Sbjct: 175 ESAQKAIEKLNGMLL-NDKQVY------VGPFLRRQERDSTANKTKFTNVYVKNLAESTT 227
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
D L+ F Y + A V+ D G+SKG+GFV F + + R++ +NG +
Sbjct: 228 DDDLKNAF-GEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEW 285
Query: 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
+G A KK+ + + QN + + + +N ++V LDPS++D+ LK +F +G
Sbjct: 286 YVG-RAQKKSERETELRVRYEQNLKEAADKFQSSN--LYVKNLDPSISDEKLKEIFSPFG 342
Query: 300 ELVHVKI---PAG--KRCGFVQFA 318
+ K+ P G K GFV FA
Sbjct: 343 TVTSSKVMRDPNGTSKGSGFVAFA 366
Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 57/211 (27%), Positives = 106/211 (50%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F +
Sbjct: 30 ATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQD 89
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A R +Q N +P + R+ ++ RR G IF+ +L + L +TF
Sbjct: 90 AARAIQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTF 144
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
+ + ++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +GP +
Sbjct: 145 SS-FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR 202
Query: 248 K----AATGQQYQKATYQNTQGSQGENDPNN 274
+ A ++ +N S ++D N
Sbjct: 203 QERDSTANKTKFTNVYVKNLAESTTDDDLKN 233
Score = 150 (57.9 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 42/134 (31%), Positives = 71/134 (52%)
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
+ ++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +GP +
Sbjct: 147 FGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR--- 202
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIP 307
Q + +T T+ T ++V L S TDD LK FG+YG++ V +K
Sbjct: 203 ---QERDSTANKTKF---------TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG 250
Query: 308 AGKR--CGFVQFAN 319
GK GFV F N
Sbjct: 251 EGKSKGFGFVNFEN 264
Score = 141 (54.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 47/192 (24%), Positives = 94/192 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ ++++ +L + + + FG G+ S V+++ + S+G+GF+ F +
Sbjct: 209 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADD 267
Query: 128 AERVLQTFNGTQMPSTEQNF-RLNWATYGAGERR----QD--DGPD-F---TIFVGDLAA 176
A R +++ NG + E R + E R Q+ + D F ++V +L
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 327
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
++D L+E F + + +V +KV+ D G SKG GFV F E +M++++G + +
Sbjct: 328 SISDEKLKEIF-SPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIES 385
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 386 KPLYVAIAQRKE 397
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKELFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 216 (81.1 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKELFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 227 (85.0 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 54/163 (33%), Positives = 86/163 (52%)
Query: 158 ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFG 217
E R D F +FVGDL+ DV++ +L+ TF + V AKV+ D T +SKGYGFV F
Sbjct: 216 EMRIDTSKHFHVFVGDLSKDVSNELLKSTFTK-FGEVSEAKVIRDVQTQKSKGYGFVSFP 274
Query: 218 DESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTI 277
++ ++ MNG R +R AA K + + K T++ S +NT++
Sbjct: 275 NKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRD--KLTFEQVFNS---TKADNTSV 329
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
+VG + TD L+ +F YG++ V+I +R FV++ +
Sbjct: 330 YVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKK 372
Score = 156 (60.0 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 44/167 (26%), Positives = 79/167 (47%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL + + S F GE KVIR+ QT S+GYGF+ F + AE +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 136 NGTQMPSTEQNFRLNWATYGAGERRQDD-----------GPDFTIFVGDLAADVTDYVLQ 184
NG + ++ R NWA E +D + +++VG+++ TD L+
Sbjct: 287 NGKWIG--KRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLR 344
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
+ F + Y + ++ +++ Y FVR+ + +++ EMNG
Sbjct: 345 DLF-STYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNG 384
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 216 (81.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 59/183 (32%), Positives = 93/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 504 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 555
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 229 (85.7 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 69/265 (26%), Positives = 129/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I ++ ++ + F G +S KV+ ++ N S+GYGF+ F +
Sbjct: 91 PGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA R ++T NG + + + F ++ + ER + G +FT +++ + D+
Sbjct: 149 EAANRAIETMNGMLL-NDRKVFVGHFKS--RKEREAEMGAKAVEFTNVYIKNFGEDIDSE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+ F + V+TD GRS+G+GFV F + + R++TEMNG + R + +
Sbjct: 206 KLKNIFTE-FGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 242 GPAATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A + G+ ++++ + Q QG N ++V LD S+ D+ L+ F Y
Sbjct: 264 GRAQKRLERQGELKRKFEQIKQERIQRYQGVN------LYVKNLDDSIDDEKLRKEFAPY 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ + GFV F++
Sbjct: 318 GTITSAKVMTDGGHSRGFGFVCFSS 342
Score = 202 (76.2 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 57/186 (30%), Positives = 92/186 (49%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL++GDL + E+ + F G+ +S +V R+ T S GY +I F A AE L
Sbjct: 10 LASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G IF+ ++ + + L +TF A +
Sbjct: 70 DTMNYEVIKG--RPIRIMWSQRDPGLRKSGVG---NIFIKNMDESIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
++ KVV D G SKGYGFV F + R++ MNG+L + R + +G ++K
Sbjct: 124 NILSCKVVCDEN-G-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 253 QQYQKA 258
+ KA
Sbjct: 182 EMGAKA 187
Score = 173 (66.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 53/185 (28%), Positives = 89/185 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
++ + +IF G+ +S V+ +++ S G+GF+ FV+H A R + NG ++
Sbjct: 202 IDSEKLKNIFTEFGKTLSVCVMTDERGR-SRGFGFVNFVNHGDARRAVTEMNGKELNGRV 260
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F A Y +
Sbjct: 261 LYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEF-APYGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
+ AKV+TD G S+G+GFV F E +++TEMNG + ST+P+ + A K KA
Sbjct: 320 ITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Query: 251 TGQQY 255
QY
Sbjct: 378 LTNQY 382
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 214 (80.4 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 59/183 (32%), Positives = 92/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 164 (62.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 142 (55.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/149 (28%), Positives = 72/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
Score = 38 (18.4 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 493 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 544
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 228 (85.3 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 72/259 (27%), Positives = 127/259 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A G+ +L++ +L ++ + F G VS KV + S GYGF++F + +
Sbjct: 128 ARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDS 186
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD--DGPDFT-IFVGDLAADVTDYVLQ 184
A+ ++ NG + + +Q F + E R+ D FT ++V +L+ TD L+
Sbjct: 187 AKNAIEKLNGKVL-NDKQIFV---GPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
TF Y S+ A V+ D G+S+ +GFV F + + R++ +NG + +G A
Sbjct: 243 TTF-GQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
KK+ + + Q + S G N + ++V LD +VTD+ L+ +F ++G +
Sbjct: 301 Q-KKSERELELSRRYEQGS--SDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSC 357
Query: 305 KI---PAG--KRCGFVQFA 318
K+ P+G K GFV F+
Sbjct: 358 KVMRDPSGTSKGSGFVAFS 376
Score = 201 (75.8 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 60/225 (26%), Positives = 106/225 (47%)
Query: 63 GVAPDASSDGIR-----SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGY 117
G+ DG+ SL++GDL + +S + F + VS +V R+ TN S GY
Sbjct: 30 GIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGY 89
Query: 118 GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAAD 177
G++ + + AE+ +Q N + + + R+ +++ + RR G +FV +L
Sbjct: 90 GYVNYSNTDDAEKAMQKLNYSYLNG--KMIRITYSSRDSSARRSGVG---NLFVKNLDKS 144
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
V + L E F ++ KV TD G+S+GYGFV+F E ++ ++NG + + +
Sbjct: 145 VDNKTLHEAFSGC-GTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDK 202
Query: 238 PMRIGPAATKK----AATGQQYQKATYQNTQGSQGENDPNNTTIF 278
+ +GP K+ AA ++ +N S+ D T F
Sbjct: 203 QIFVGPFLRKEERESAADKMKFTNVYVKNL--SEATTDDELKTTF 245
Score = 154 (59.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 53/198 (26%), Positives = 93/198 (46%)
Query: 67 DASSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
++++D ++ ++++ +L + + + FG G S V+R+ S +GF+ F +
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFEN 274
Query: 125 HAAAERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDF---TIF 170
A R ++ NG + +E+ L+ Y G D G F ++
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELS-RRYEQGS--SDGGNKFDGLNLY 331
Query: 171 VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230
V +L VTD L+E F A + ++ KV+ D +G SKG GFV F SE R + EMN
Sbjct: 332 VKNLDDTVTDEKLRELF-AEFGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 231 GVLCSTRPMRIGPAATKK 248
G + +P+ + A K+
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 50/158 (31%), Positives = 77/158 (48%)
Query: 171 VGDLAADVTDY-VLQETFRAVYS---SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
VG+L D V +T +S ++ KV TD G+S+GYGFV+F E ++
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAI 191
Query: 227 TEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV 286
++NG + + + + +GP K ++ + A + T ++V L +
Sbjct: 192 EKLNGKVLNDKQIFVGPFLRK-----EERESAA----------DKMKFTNVYVKNLSEAT 236
Query: 287 TDDILKTVFGQYGEL---VHVKIPAGK-RC-GFVQFAN 319
TDD LKT FGQYG + V ++ GK RC GFV F N
Sbjct: 237 TDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFEN 274
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 227 (85.0 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 70/262 (26%), Positives = 128/262 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV+ + S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA+ ++T NG + + + F ++ + ER + G +FT I+V +L DV +
Sbjct: 149 EAAQNAIRTMNGMLL-NDRKVFVGHFKS--RREREAELGARALEFTNIYVKNLHVDVDER 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + + + KV+ D +G S+G+GFV F + +++T+MNG S R + +
Sbjct: 206 CLQDLF-SQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + ++V LD S+ D+ L+ F YG +
Sbjct: 264 GRA--QKRVERQNELKRRFEQMKQDRLTRY-QGVNLYVKNLDDSIDDEKLRKEFAPYGMI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 200 (75.5 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G +F+ +L + + L
Sbjct: 62 PADAERALDTMNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NVFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+TF + + ++ KVV D G S+G+GFV F ++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVG 171
Score = 189 (71.6 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 57/207 (27%), Positives = 103/207 (49%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S G+GF+ F H A++ +
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ + ++ R N + +QD + ++V +L + D L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F A Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-APYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 244 AATK---KAATGQQY-QKATYQNTQGS 266
A K KA QY Q+ + GS
Sbjct: 368 AQRKEERKAILTNQYIQRLSTMRALGS 394
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 221 (82.9 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 65/250 (26%), Positives = 123/250 (49%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
GI +++I +L ++ + F G+ +S KV+ + Q S+GY F+ F + +AA+R
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRA 153
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
++ NG + + R E R +FT +++ + D+ D L++ F +
Sbjct: 154 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSK-ASEFTNVYIKNFGGDMDDERLKDVF-S 211
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-- 247
Y KV+TD ++G+SKG+GFV F +++ EMNG + + + +G A K
Sbjct: 212 KYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 270
Query: 248 -KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+A Q +++ + +G QG +++ LD ++ D+ L+ F +G + VK+
Sbjct: 271 RQAELKQMFEQLKRERIRGCQG------VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV 324
Query: 307 --PAGKRCGF 314
G+ GF
Sbjct: 325 MQEEGQSKGF 334
Score = 189 (71.6 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 55/185 (29%), Positives = 92/185 (49%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL + E + F G +S ++ R++ T S GY ++ F+ A A++ L T
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + ++ RL W+ A RR G +F+ +L + + L E F A + +
Sbjct: 71 MNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHFSA-FGKI 124
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+KV++D G SKGY FV F ++S R++ EMNG L + +G +K +
Sbjct: 125 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 182
Query: 255 YQKAT 259
KA+
Sbjct: 183 RSKAS 187
Score = 150 (57.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 42/171 (24%), Positives = 80/171 (46%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +F G+ +S KV+ + S+G+GF+ F SH AA++ ++ NG +
Sbjct: 201 MDDERLKDVFSKYGKTLSVKVMTDSSGK-SKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 259
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L R +++ +L + D L+ F + + S
Sbjct: 260 IFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSS-FGS 318
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ KV+ + G+SKG+G + F + ++MTEMNG + ++P+ I A
Sbjct: 319 ISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 225 (84.3 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 70/265 (26%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S G+GF+ F +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA R +QT NG + + + F ++ + ER + G +FT +++ + D+ D
Sbjct: 149 EAATRAIQTMNGMLL-NDRKVFVGHFKS--RKEREAEFGARAMEFTNVYIKNFGDDMDDN 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + KV+ D T GRSKG+GFV F E +++ +MNG + R + +
Sbjct: 206 RLREIFSR-FGKTLSVKVMMDHT-GRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A + ++ +++++ + QG N ++V LD + D+ L+ F Y
Sbjct: 264 GRAQKRLERQSELKRKFEQMKQERVSRYQGVN------LYVKNLDDGIDDERLRKEFSPY 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GTITSAKVMTEGGHSKGFGFVCFSS 342
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 57/184 (30%), Positives = 94/184 (51%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ + S GY +I F
Sbjct: 2 NASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + + R+ W+ G R+ G +F+ +L + + L
Sbjct: 62 PADAERALDTMNFEVIKG--RPVRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF A + ++ KVV D G S+G+GFV F + R++ MNG+L + R + +G
Sbjct: 117 DTFSA-FGNILSCKVVCDEN-G-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHF 173
Query: 245 ATKK 248
++K
Sbjct: 174 KSRK 177
Score = 180 (68.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 53/187 (28%), Positives = 91/187 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
M+++ + IF G+ +S KV+ + T S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRM 260
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + Y +
Sbjct: 261 VYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEF-SPYGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAA 250
+ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ + A K KA
Sbjct: 320 ITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAI 377
Query: 251 TGQQYQK 257
QY +
Sbjct: 378 LTNQYMQ 384
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 221 (82.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 65/250 (26%), Positives = 123/250 (49%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
GI +++I +L ++ + F G+ +S KV+ + Q S+GY F+ F + +AA+R
Sbjct: 154 GIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRA 211
Query: 132 LQTFNGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
++ NG + + R E R +FT +++ + D+ D L++ F +
Sbjct: 212 IEEMNGKLLKGCKVFVGRFKNRKDREAELRSK-ASEFTNVYIKNFGGDMDDERLKDVF-S 269
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-- 247
Y KV+TD ++G+SKG+GFV F +++ EMNG + + + +G A K
Sbjct: 270 KYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE 328
Query: 248 -KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+A Q +++ + +G QG +++ LD ++ D+ L+ F +G + VK+
Sbjct: 329 RQAELKQMFEQLKRERIRGCQG------VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKV 382
Query: 307 --PAGKRCGF 314
G+ GF
Sbjct: 383 MQEEGQSKGF 392
Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 55/185 (29%), Positives = 92/185 (49%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL + E + F G +S ++ R++ T S GY ++ F+ A A++ L T
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + ++ RL W+ A RR G +F+ +L + + L E F A + +
Sbjct: 129 MNFDIIKG--KSIRLMWSQRDAYLRRSGIG---NVFIKNLDKSIDNKTLYEHFSA-FGKI 182
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+KV++D G SKGY FV F ++S R++ EMNG L + +G +K +
Sbjct: 183 LSSKVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAEL 240
Query: 255 YQKAT 259
KA+
Sbjct: 241 RSKAS 245
Score = 150 (57.9 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 42/171 (24%), Positives = 80/171 (46%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +F G+ +S KV+ + S+G+GF+ F SH AA++ ++ NG +
Sbjct: 259 MDDERLKDVFSKYGKTLSVKVMTDSSGK-SKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 317
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L R +++ +L + D L+ F + + S
Sbjct: 318 IFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSS-FGS 376
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ KV+ + G+SKG+G + F + ++MTEMNG + ++P+ I A
Sbjct: 377 ISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 425
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 191 (72.3 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 57/209 (27%), Positives = 100/209 (47%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE--------GYG 118
D SD +L I L M + + S+F GE S K+IR+K S GYG
Sbjct: 49 DEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYG 108
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG-PDFTIFVGDLAAD 177
F+ +V+ + AER + T NG ++ S + ++++A R DG D +++ L
Sbjct: 109 FVNYVNPSDAERAINTLNGLRLQS--KTIKVSYA------RPSSDGIKDANLYISGLPKT 160
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-- 235
+T +++ F Y + ++++ D+ +G S+G F+RF SE ++ ++NG S
Sbjct: 161 MTQKNVEDMFTQ-YGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGA 219
Query: 236 TRPMRIGPAATKKAATGQQYQKATYQNTQ 264
+ P+ + AA + Q Y +TQ
Sbjct: 220 SEPITVKFAANPNQSKNSQLLSQLY-HTQ 247
Score = 52 (23.4 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L + IL +FG +G + +VK+ +C GFV N
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTN 336
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 221 (82.9 bits), Expect = 3.3e-17, P = 3.3e-17
Identities = 61/200 (30%), Positives = 100/200 (50%)
Query: 63 GVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
G P+A+ + SL+IGDL P + E+ + F G +S +V R+ + S GY ++ F
Sbjct: 47 GYPPNATYS-MASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
A AER L T N + + R+ W+ RR +G IF+ +L + +
Sbjct: 106 QQPADAERALDTMNFEVIHG--RPMRIMWSQRDPAARRAGNG---NIFIKNLDRVIDNKS 160
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+ +TF +++ ++ KV TD G SKGYGFV F E ++ ++NG+L S + + +G
Sbjct: 161 VYDTF-SLFGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG 218
Query: 243 ---PAATKKAATGQQYQKAT 259
P A + G+ K T
Sbjct: 219 KFQPRAQRMKELGESGLKYT 238
Score = 173 (66.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 60/260 (23%), Positives = 116/260 (44%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A G +++I +L ++ + F G +S KV + + N S+GYGF+ F +
Sbjct: 137 PAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETE 195
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFT-IFVGDLAADVTDYV 182
+A+ ++ NG M +++ + A ++ + G +T +FV + +
Sbjct: 196 HSAQTAIEKVNG--MLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEK 253
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN-----GVLCSTR 237
L F + + + A V+TD G+ KG+GFV F D+ +++ ++N G C
Sbjct: 254 LSAMF-SKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLS 311
Query: 238 PMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
R + + A ++Y+ + Q QG N ++V ++ + DD L+ F
Sbjct: 312 VCRAQKKSERSAELKRKYEALKQERVQRYQGVN------LYVKNIEEDLNDDGLRDHFSS 365
Query: 298 YGELVHVKIPA---GKRCGF 314
+G + K+ G+ GF
Sbjct: 366 FGTITSAKVMVDENGRSKGF 385
Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 51/213 (23%), Positives = 94/213 (44%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN-----GTQ 139
+++ ++++F GE S V+ + Q +G+GF+ F AA + ++ N GT
Sbjct: 249 LDQEKLSAMFSKFGEITSAVVMTDAQGK-PKGFGFVAFADQDAAGQAVEKLNDSILEGTD 307
Query: 140 --------MPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+E++ L + R ++V ++ D+ D L++ F + +
Sbjct: 308 CKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS-F 366
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---K 248
++ AKV+ D GRSKG+GFV F E ++T+MN + +P+ + A K +
Sbjct: 367 GTITSAKVMVDEN-GRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNTTIFVGG 281
A QY + G Q P T ++ G
Sbjct: 426 AQLASQYMQRLATLRMGQQASGVPAMTQLYQPG 458
Score = 126 (49.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 41/157 (26%), Positives = 74/157 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + + +TF +++ ++ KV TD G SKGYGFV F E ++ +
Sbjct: 147 IFIKNLDRVIDNKSVYDTF-SLFGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEK 204
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
+NG+L S + + +G K Q+ ++ GE+ T +FV +
Sbjct: 205 VNGMLLSDKKVYVG----KFQPRAQRMKEL---------GESGLKYTNVFVKNFGEHLDQ 251
Query: 289 DILKTVFGQYGELVHVKIPAG-----KRCGFVQFANR 320
+ L +F ++GE+ + K GFV FA++
Sbjct: 252 EKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQ 288
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 220 (82.5 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 70/262 (26%), Positives = 126/262 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV+ ++ S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA+ + T NG + + + F ++ + ER + G +FT I+V +L DV +
Sbjct: 149 EAAQNAISTMNGMLL-NDRKVFVGHFKS--RREREVELGARAMEFTNIYVKNLHVDVDEQ 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + + + KV+ D +G S+G+GFV F E +++ MNG S R + +
Sbjct: 206 RLQDLF-SQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + ++V LD S+ D+ L+ F YG +
Sbjct: 264 GRA--QKRVERQNELKRRFEQMKQDRLTRY-QGVNLYVKNLDDSIDDEKLRKEFSPYGVI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 57/178 (32%), Positives = 90/178 (50%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+TF + + ++ KVV D G S+G+GFV F +++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVG 171
Score = 184 (69.8 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 53/197 (26%), Positives = 99/197 (50%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S G+GF+ F H A++ +
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ + ++ R N + +QD + ++V +L + D L
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 244 AATK---KAATGQQYQK 257
A K KA QY +
Sbjct: 368 AQRKEERKAILTNQYMQ 384
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 219 (82.2 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 70/262 (26%), Positives = 126/262 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV+ + S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ + T NG + + + F ++ + ER + G +FT I+V +L DV +
Sbjct: 149 EAAQQAITTMNGMLL-NDRKVFVGHFKS--RREREVELGARAMEFTNIYVKNLHVDVDEQ 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + + KV+ D +G S+G+GFV F E +++ +MNG S R + +
Sbjct: 206 GLQDLFSR-FGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + ++V LD S+ D+ L+ F YG +
Sbjct: 264 GRA--QKRVERQSELKRRFEQLKQDRLTRY-QGVNLYVKNLDDSIDDEKLRKEFSPYGVI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 208 (78.3 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 58/178 (32%), Positives = 91/178 (51%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEVIKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+TF + + ++ KVV D G S+G+GFV F +++T MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVG 171
Score = 186 (70.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 62/246 (25%), Positives = 114/246 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S G+GF+ F H A++ +
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMD 250
Query: 135 FNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E+ L + R ++V +L + D L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVAL 367
Query: 244 AATK---KAATGQQYQK--ATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
A K KA QY + +T + G + T+ F+ PSV + + F +
Sbjct: 368 AQRKEERKAILTNQYMQRLSTVRALGGPLLGSFHQPTSYFL----PSVPQKLDRPPFKNF 423
Query: 299 GELVHV 304
+VH+
Sbjct: 424 FSVVHL 429
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 187 (70.9 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 52/197 (26%), Positives = 97/197 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ +V
Sbjct: 32 ATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 91
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 92 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKDMEQLF 144
Query: 188 RAVYSSVKGAKVVTDRTT-GRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPA 244
+ Y + ++++ D+ T G S+G GF+RF +E ++ +NG L + P+ + A
Sbjct: 145 -SQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFA 203
Query: 245 ATKKAATGQQYQKATYQ 261
TGQ YQ
Sbjct: 204 NNPSQKTGQALLTQLYQ 220
Score = 61 (26.5 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 326
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 220 (82.5 bits), Expect = 5.4e-17, P = 5.4e-17
Identities = 49/157 (31%), Positives = 87/157 (55%)
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
F IFVGDL++++ L+E F + + +VV D T +SKGYGFV F +SE ++
Sbjct: 461 FHIFVGDLSSEIETQQLREAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAI 519
Query: 227 TEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV 286
T MNG +R +R A K A+ + + T+ ++ P+N T++VGG++ ++
Sbjct: 520 TAMNGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYN---QSSPSNCTVYVGGVNSAL 576
Query: 287 T---DDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
T +++L+ F YG + +++ K FV+F+ +
Sbjct: 577 TALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTK 613
Score = 169 (64.5 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 49/181 (27%), Positives = 89/181 (49%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL +E + F GE +V+R+ QT S+GYGF+ F+ + AE +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 136 NGTQMPSTEQNFRLNWATYGAGERRQDDGP-------------DFTIFVGDLAADVT--- 179
NG + S ++ R NWAT +++ P + T++VG + + +T
Sbjct: 523 NGQWLGS--RSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALS 580
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
+ VLQ+TF A Y +++ +V D KGY FVRF + ++ ++ + +P+
Sbjct: 581 EEVLQKTF-APYGAIQEIRVFKD------KGYAFVRFSTKEAATHAIVGVHNTEINAQPV 633
Query: 240 R 240
+
Sbjct: 634 K 634
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 206 (77.6 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 57/177 (32%), Positives = 87/177 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P S + SL++GDL P + E+ + F G +S +V R++ T S GY + F
Sbjct: 3 PSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQL 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
AER L T N + + R+ W+ R+ G IFV +L + L +
Sbjct: 63 EDAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDRSIDSKTLYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
TF A + ++ KVV D G SKGYGFV F + E R++ +MNG+ + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVG 171
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 66/269 (24%), Positives = 126/269 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ ++++ +L ++ + F G +S KV+ ++ N S+GYGF+ F +
Sbjct: 91 PSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AER ++ NG + + + F + + +R+ + G +FT +++ +L D+ D
Sbjct: 149 EEAERAIEKMNGMFL-NDRKVFVGRFKS--RRDRQAELGARAKEFTNVYIKNLGEDMDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +
Sbjct: 206 RLQDLFSR-FGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTI-------FVGGLDPSVTDDILKTV 294
G A K + K + E P + ++ +V LD + D+ L+
Sbjct: 264 GRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKE 323
Query: 295 FGQYGELVHVKIPA----GKRCGFVQFAN 319
F +G + K+ K GFV F++
Sbjct: 324 FSPFGTITSAKVTMEGGRSKGFGFVCFSS 352
Score = 121 (47.7 bits), Expect = 0.00015, P = 0.00015
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
++V +L + D L++ F + + ++ AKV + GRSKG+GFV F E +++TE
Sbjct: 306 LYVKNLDDGIDDERLRKEF-SPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTE 362
Query: 229 MNGVLCSTRPMRIGPAATKK---AATGQQYQK 257
MNG + +T+P+ + A K+ A QY +
Sbjct: 363 MNGRIVATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 36 (17.7 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 235 STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNT 275
ST+ M PAA AA Y+ T G + NT
Sbjct: 493 STQMMGPHPAAASTAAAPAARTVTQYKYTAGVRNPPQHLNT 533
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 218 (81.8 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 60/193 (31%), Positives = 95/193 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKA 258
++K + +A
Sbjct: 175 SRKEREAEMGARA 187
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 47/175 (26%), Positives = 88/175 (50%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144
M++ + IF G +S +V+ + + S+G+GF+ F H A+R + NG +M +
Sbjct: 202 MDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQ 260
Query: 145 --------QNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVLQETFRAVYSS 193
+ R + +QD + ++V +L + D L++ F + + +
Sbjct: 261 VYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 135 (52.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 40/149 (26%), Positives = 70/149 (46%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETHEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAEMGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +F +YG + +++ +GK GF
Sbjct: 205 EKLKEIFCKYGPALSIRVMTDDSGKSKGF 233
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 187 (70.9 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTQLYQSS 222
Score = 61 (26.5 bits), Expect = 6.1e-17, Sum P(2) = 6.1e-17
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 335
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 217 (81.4 bits), Expect = 6.2e-17, P = 6.2e-17
Identities = 70/262 (26%), Positives = 126/262 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GYGF+ F +
Sbjct: 27 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 84
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AAER ++ NG + + + F + + ER + G +FT +++ + D+ D
Sbjct: 85 EAAERAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGARAKEFTNVYIKNFGEDMDDE 141
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +
Sbjct: 142 RLKELF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A KK + ++ Q Q N ++V LD + D+ L+ F +G +
Sbjct: 200 G-RAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTI 256
Query: 302 VHVKI--PAG--KRCGFVQFAN 319
K+ G K GFV F++
Sbjct: 257 TSAKVMMEGGRSKGFGFVCFSS 278
Score = 164 (62.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 138 MDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 196
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 197 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 255
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 256 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 308
Score = 157 (60.3 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 52/190 (27%), Positives = 87/190 (45%)
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G IF+ +L + + L +TF
Sbjct: 1 AERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTF 55
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G ++
Sbjct: 56 SA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 112
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI- 306
K + G T +++ + D+ LK +FG++G + VK+
Sbjct: 113 K-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVM 159
Query: 307 --PAGKRCGF 314
+GK GF
Sbjct: 160 TDESGKSKGF 169
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 68/265 (25%), Positives = 130/265 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA+R ++ NG + + + F + + ER + G +FT +++ + D+ D
Sbjct: 149 DAADRAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGDDMDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + Y KV+TD TG+SKG+GFV F + +++ EMNG + + + +
Sbjct: 206 RLKELF-SKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRRFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 204 (76.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 58/190 (30%), Positives = 94/190 (49%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
SS + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A A
Sbjct: 6 SSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
ER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 66 ERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFS 120
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
A + ++ KVV D G SKGY FV F + R++ +MNG+L + R + +G ++K
Sbjct: 121 A-FGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Query: 249 AATGQQYQKA 258
+ KA
Sbjct: 178 EREAELGAKA 187
Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 51/204 (25%), Positives = 95/204 (46%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +F G+ +S KV+ + T S+G+GF+ F H
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG + E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 56/193 (29%), Positives = 95/193 (49%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQ 256
A K A Y+
Sbjct: 182 ATRKPPAPKSTYE 194
Score = 150 (57.9 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 45/166 (27%), Positives = 80/166 (48%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+D+ P T++VG+L+ DVT+ ++ + F + K K++ D T G Y FV F +
Sbjct: 2 EDEMPK-TLYVGNLSRDVTEALILQLFSQI-GPCKNCKMIMD-TAGNDP-YCFVEFHEHR 57
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
++ MNG + +++ A T + + +T +TQ SQ ++ +FVG
Sbjct: 58 HAAAALAAMNGRKIMGKEVKVNWATTPSSQK-KDTSSSTVVSTQRSQ-----DHFHVFVG 111
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKI----PAGKR--CGFVQFANR 320
L P +T + +K F +G + ++ GK GFV F N+
Sbjct: 112 DLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 186 (70.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTHLYQSS 222
Score = 61 (26.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 186 (70.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTHLYQSS 222
Score = 61 (26.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 186 (70.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTHLYQSS 222
Score = 61 (26.5 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 214 (80.4 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 69/262 (26%), Positives = 126/262 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GYGF+ F +
Sbjct: 46 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 103
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AAER ++ NG + + + F + + ER + G +FT +++ + D+ D
Sbjct: 104 EAAERAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGARAKEFTNVYIKNFGEDMDDE 160
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L++ F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +
Sbjct: 161 RLKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A KK + ++ Q Q N ++V LD + D+ L+ F +G +
Sbjct: 219 G-RAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFGTI 275
Query: 302 VHVKI--PAG--KRCGFVQFAN 319
K+ G K GFV F++
Sbjct: 276 TSAKVMMEGGRSKGFGFVCFSS 297
Score = 183 (69.5 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 111 TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIF 170
T S GY ++ F A AER L T N + + R+ W+ R+ G IF
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIF 57
Query: 171 VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230
+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +MN
Sbjct: 58 IKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMN 114
Query: 231 GVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290
G+L + R + +G ++K + G T +++ + D+
Sbjct: 115 GMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDDER 161
Query: 291 LKTVFGQYGELVHVKI---PAGKRCGF 314
LK +FG++G + VK+ +GK GF
Sbjct: 162 LKDLFGKFGPALSVKVMTDESGKSKGF 188
Score = 164 (62.8 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 46/175 (26%), Positives = 87/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 157 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 215
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 216 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 274
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 275 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 327
Score = 38 (18.4 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 237 RPMRIGPAATKKAATGQQYQKAT-YQNTQ---GSQGENDPNNTTIFVGGLDP 284
RP AAT T QY+ A +N Q +Q + + V G +P
Sbjct: 448 RPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEP 499
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 182 (69.1 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 45/165 (27%), Positives = 84/165 (50%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
D D +L + L M + + S+F GE S K+IR+K S GYGF+ +++
Sbjct: 27 DELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPN 86
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQET 186
AER + T NG ++ S + ++++A + D D +++ L +T ++E
Sbjct: 87 DAERAISTLNGLRLQS--KTIKVSYARPSS-----DSIKDANLYISGLPKTMTQKDVEEM 139
Query: 187 FRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
F Y + ++V+ D+ +G S+G F+RF +E ++ ++NG
Sbjct: 140 FGR-YGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 109 (43.4 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SSD I+ +L+I L M + + +FG G ++ +V+ ++ + S G FI F A
Sbjct: 113 SSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRA 172
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE ++ NG + P + + +A
Sbjct: 173 EAEDAIKDLNGQKPPGAAEQMTVKFA 198
Score = 89 (36.4 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 20/79 (25%), Positives = 38/79 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L D + +L + F + +V KV+ D T + KG+GFV E ++
Sbjct: 260 IFIYNLGQDADEGILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIAS 318
Query: 229 MNGVLCSTRPMRIGPAATK 247
+NG + +++ +K
Sbjct: 319 LNGYRLGDKILQVSFKTSK 337
Score = 66 (28.3 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 214 VRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPN 273
V+F Q+++ T++ + + R G +A + + + + G G N P
Sbjct: 195 VKFAASPNQVKN-TQVIPQVYHQQSRRFGGPVHHQAQRFR-FSPMSVDHMSGMSGVNVPG 252
Query: 274 NTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
N++ IF+ L + IL +FG +G + +VK+
Sbjct: 253 NSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 289
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 70/262 (26%), Positives = 124/262 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV ++ S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ + T NG + + + F ++ + ER + G +FT I+V +L DV +
Sbjct: 149 EAAQQAINTMNGMLL-NDRKVFVGHFKS--RREREAELGARALEFTNIYVKNLPVDVDEQ 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + + + KV+ D + G S+ +GFV F E +++ MNG S R +
Sbjct: 206 GLQDLF-SQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + ++V LD S+ DD L+ F YG +
Sbjct: 264 GRA--QKRVERQNELKRRFEQMKQDRLRRY-QGVNLYVKNLDDSIDDDKLRKEFSPYGVI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSAKVMTEGGHSKGFGFVCFSS 342
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+TF + + ++ KV D G S+G+GFV F +++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 169 (64.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 52/197 (26%), Positives = 98/197 (49%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S +GF+ F H A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ + ++ R N + +QD + ++V +L + D L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-SPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 244 AATK---KAATGQQYQK 257
A K KA QY +
Sbjct: 368 AQRKEERKAILTNQYMQ 384
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 185 (70.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTHLYQSS 222
Score = 61 (26.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 185 (70.2 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 50/198 (25%), Positives = 97/198 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG G+ S K++R+K T S GYGF+ +
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPND 92
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
A++ + T NG ++ + + ++++A + R D ++V L ++ +++ F
Sbjct: 93 ADKAINTLNGLKLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMSQKEMEQLF 145
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG L + P+ + A
Sbjct: 146 -SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 246 TKKAATGQQYQKATYQNT 263
TGQ YQ++
Sbjct: 205 NPSQKTGQALLTHLYQSS 222
Score = 61 (26.5 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + +L +FG +G + +VK+ +C GFV N
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 205 (77.2 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 65/244 (26%), Positives = 116/244 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV ++ S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ + T NG + + + F ++ + ER + G +FT I+V +L DV +
Sbjct: 149 EAAQQAINTMNGMLL-NDRKVFVGHFKS--RREREAELGARALEFTNIYVKNLPVDVDEQ 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
LQ+ F + + + KV+ D + G S+ +GFV F E +++ MNG S R +
Sbjct: 206 GLQDLF-SQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G A +K Q K ++ + + ++V LD S+ DD L+ F YG +
Sbjct: 264 GRA--QKRVERQNELKRRFEQMKQDRLRRY-QGVNLYVKNLDDSIDDDKLRKEFSPYGVI 320
Query: 302 VHVK 305
K
Sbjct: 321 TSAK 324
Score = 204 (76.9 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 56/178 (31%), Positives = 89/178 (50%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+TF + + ++ KV D G S+G+GFV F +++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Score = 120 (47.3 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 41/154 (26%), Positives = 73/154 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF + + ++ KV D G S+G+GFV F +++
Sbjct: 101 IFIKNLEDSIDNKALYDTF-STFGNILSCKVACDEH-G-SRGFGFVHFETHEAAQQAINT 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G +++ + G T I+V L V +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRR-------------EREAELGARALEFTNIYVKNLPVDVDE 204
Query: 289 DILKTVFGQYGELVHVKIP---AG-KRC-GFVQF 317
L+ +F Q+G+++ VK+ +G RC GFV F
Sbjct: 205 QGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNF 238
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 204 (76.9 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 63/261 (24%), Positives = 120/261 (45%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ ++++ +L + + G +S V+ ++ N S+GYGF+ F +H
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQ---NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
AAER ++ NG + + F+ R + P+ +++ + D+ D
Sbjct: 149 EAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VYIKNFGEDMDDER 206
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
L++ F + KV+TD + G+SKG+GFV F + +++ EMNG + + + +G
Sbjct: 207 LKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVG 264
Query: 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A +K Q K T++ + + ++V LD + D+ L+ F +G +
Sbjct: 265 RA--QKKVERQTELKRTFEQMKQDRITRY-QVVNLYVKNLDDGIDDERLRKAFSPFGTIT 321
Query: 303 HVKI--PAG--KRCGFVQFAN 319
K+ G K GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 183 (69.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 53/183 (28%), Positives = 86/183 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P S SL++GDL P + E+ + F G +S ++ R+ T+ S Y ++ F
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
AE L T N + + R+ W+ R+ G IFV +L + + L +
Sbjct: 63 KDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
T A + ++ VV D G SKGYGFV F R++ +MNG+L + R + +G
Sbjct: 118 TVSA-FGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 39/151 (25%), Positives = 74/151 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTI---FVGDLAADVTDYVLQETFRAV 190
E+ L T+ + +QD + + +V +L + D L++ F +
Sbjct: 261 IYVGRAQKKVERQTELK-RTFE--QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAF-SP 316
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
+ ++ AKV+ + GRSKG+GFV F E
Sbjct: 317 FGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 210 (79.0 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 57/194 (29%), Positives = 96/194 (49%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
SS + SL++GDL P + ES + F G +S +V R+ T S GY ++ F A A
Sbjct: 27 SSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADA 86
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
ER + T N + + R+ W+ RR G IF+ +L + + + +TF
Sbjct: 87 ERAMDTMNFEALHG--KPMRIMWSQRDPAMRRSGAG---NIFIKNLDKVIDNKSIYDTF- 140
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG---PAA 245
+++ ++ KV D G SKGYGFV F E ++ ++NG+L + + + +G P A
Sbjct: 141 SLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 199
Query: 246 TKKAATGQQYQKAT 259
+ G+ ++ T
Sbjct: 200 QRNRELGETAKQFT 213
Score = 175 (66.7 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 58/254 (22%), Positives = 110/254 (43%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ I F G +S KV ++ FS+GYGF+ F +
Sbjct: 112 PAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETE 170
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDD-GPDFT-IFVGDLAADVTDYVL 183
AA+ +Q NG + ++ F + R + FT ++V + L
Sbjct: 171 EAAQNAIQKVNGMLLAG-KKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETL 229
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F A + ++ +V+T G+SKG+GFV F + E ++ ++ +++
Sbjct: 230 EKLF-AKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Query: 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303
+K + K ++ + + + ++V LD +V DD LK F YG +
Sbjct: 287 CRAQKKSERHAELKKKHEQHKAERMQKY-QGVNLYVKNLDETVDDDGLKKQFESYGNITS 345
Query: 304 VKIPA---GKRCGF 314
K+ G+ GF
Sbjct: 346 AKVMTDENGRSKGF 359
Score = 145 (56.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 50/184 (27%), Positives = 83/184 (45%)
Query: 90 IASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ-----TFNGTQMP--- 141
+ +F G S +V+ + S+G+GF+ F + AE +Q T GT +
Sbjct: 229 LEKLFAKFGNITSCEVMTVEGK--SKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHV 286
Query: 142 -----STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG 196
+E++ L R ++V +L V D L++ F + Y ++
Sbjct: 287 CRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITS 345
Query: 197 AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK---KAATGQ 253
AKV+TD GRSKG+GFV F E ++TEMN + ++P+ + A K +A
Sbjct: 346 AKVMTDEN-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLAS 404
Query: 254 QYQK 257
QY +
Sbjct: 405 QYMQ 408
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 47/140 (33%), Positives = 76/140 (54%)
Query: 77 WIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136
++G+L + E+ I +F G + K+I + N + Y F+EF H A L N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMN 59
Query: 137 GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG 196
G ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A + +
Sbjct: 60 GRKIMGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAF-APFGRISD 115
Query: 197 AKVVTDRTTGRSKGYGFVRF 216
A+VV D TG+SKGYGFV F
Sbjct: 116 ARVVKDMATGKSKGYGFVSF 135
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 257 KATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKR- 311
K + T SQ ++ N+ +FVG L P +T + +K F +G + ++ GK
Sbjct: 69 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK 128
Query: 312 -CGFVQFANR 320
GFV F N+
Sbjct: 129 GYGFVSFFNK 138
Score = 80 (33.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 21/77 (27%), Positives = 38/77 (49%)
Query: 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229
+VG+L+ DVT+ ++ + F + K K++ D T G Y FV F + ++ M
Sbjct: 2 YVGNLSRDVTEALILQLFSQI-GPCKNCKMIMD-TAGNDP-YCFVEFHEHRHAAAALAAM 58
Query: 230 NGVLCSTRPMRIGPAAT 246
NG + +++ A T
Sbjct: 59 NGRKIMGKEVKVNWATT 75
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 186 (70.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 52/175 (29%), Positives = 88/175 (50%)
Query: 62 YGVAPDAS-SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFI 120
Y AP+ + +L I L M + + S+F GE S K++R+K T S GYGF+
Sbjct: 29 YCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFV 88
Query: 121 EFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTD 180
+V A R + +FNG ++ QN + +Y Q G + ++V + +T
Sbjct: 89 NYVREEDALRAVSSFNGLRL----QNKTIK-VSYARPSNDQIKGSN--LYVSGIPKSMTL 141
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235
+ L+ FR + + +++++D TG SKG GFVRF + E ++ +NG + S
Sbjct: 142 HELESIFRP-FGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPS 195
Score = 108 (43.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 184 QETFRAVYSSV---KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
QE R++++S+ + K+V D+ TG+S GYGFV + E + LR+++ NG+ + ++
Sbjct: 55 QEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIK 114
Query: 241 IGPA 244
+ A
Sbjct: 115 VSYA 118
Score = 59 (25.8 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 272 PNNTT---IFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
P++T +FV L D +L +F Q+G +V+VKI
Sbjct: 368 PSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKI 405
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 58/183 (31%), Positives = 92/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M + + +FG G +S KV+ + S+G+GF+ F H A++ + NG M
Sbjct: 202 MNDERLKEMFGKYGPALSVKVMTDDNGK-SKGFGFVSFERHEDAQKAVDEMNGKDMNGKS 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + +
Sbjct: 261 MFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLP-FGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 145 (56.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIDK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGDDMND 204
Query: 289 DILKTVFGQYGELVHVKIPA---GKRCGF 314
+ LK +FG+YG + VK+ GK GF
Sbjct: 205 ERLKEMFGKYGPALSVKVMTDDNGKSKGF 233
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 58/183 (31%), Positives = 92/183 (50%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D G SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 168 (64.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + IF G +S +V+ ++ S G+GF+ F H A+R + NG +M
Sbjct: 202 MDDDKLKDIFSKYGNAMSIRVMTDENGK-SRGFGFVSFERHEDAQRAVDEMNGKEMNGKL 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 261 IYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 319
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ D GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 320 ITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 372
Score = 141 (54.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 41/149 (27%), Positives = 70/149 (46%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IF+ +L + + L +TF A + ++ KVV D G SKGYGFV F + R++ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYGFVHFETQEAAERAIEK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G T +++ + D
Sbjct: 158 MNGMLLNDRKVFVGRFKSRK-------------EREAELGARAKEFTNVYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKIPA---GKRCGF 314
D LK +F +YG + +++ GK GF
Sbjct: 205 DKLKDIFSKYGNAMSIRVMTDENGKSRGF 233
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 208 (78.3 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 59/194 (30%), Positives = 95/194 (48%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
A A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 AATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 62
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + + R+ W+ R+ G +F+ +L + + L
Sbjct: 63 PADAERALDTMNFDVVKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALY 117
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF A + ++ KVV D G SKGY FV F + R++ +MNG+L + R + +G
Sbjct: 118 DTFSA-FGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 174
Query: 245 ATKKAATGQQYQKA 258
++K + KA
Sbjct: 175 KSRKEREAEMGAKA 188
Score = 169 (64.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 51/204 (25%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +F G+ +S KV+ + T S G+GF+ + H
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHED 244
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NGT++ E+ L + R +++ +L
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 304
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 305 TIDDEKLRKEF-SPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 362 KPLYVALAQRKEERKAHLTNQYMQ 385
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 42/149 (28%), Positives = 71/149 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+ +L + + L +TF A + ++ KVV D G SKGY FV F + R++ +
Sbjct: 102 VFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G-SKGYAFVHFETQDAADRAIEK 158
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + KA T +++ + D
Sbjct: 159 MNGMLLNDRKVFVGRFKSRKEREAEMGAKAK-------------EFTNVYIKNFGDDMDD 205
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
LK +F +YG+ + VK+ P GK GF
Sbjct: 206 QRLKELFDKYGKTLSVKVMTDPTGKSRGF 234
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 208 (78.3 bits), Expect = 7.8e-16, P = 7.8e-16
Identities = 56/184 (30%), Positives = 93/184 (50%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
A A+ G SL++GDL + +S + F G+ VS +V R+ T S GYG++ + +
Sbjct: 36 AAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYAT 95
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A R L N M + R+ ++ R+ G IF+ +L + L
Sbjct: 96 PQDASRALNELNF--MALNGRAIRVMYSVRDPSLRKSGVG---NIFIKNLDKSIDHKALH 150
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFG-DESEQLRSMTEMNGVLCSTRPMRIGP 243
ETF A + + KV D +G+SKGYGFV++ DE+ Q ++ ++NG+L + + + +GP
Sbjct: 151 ETFSA-FGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQ-GAIDKLNGMLLNDKQVYVGP 207
Query: 244 AATK 247
K
Sbjct: 208 FVHK 211
Score = 203 (76.5 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 66/267 (24%), Positives = 123/267 (46%)
Query: 62 YGVA-PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFI 120
Y V P G+ +++I +L ++ + F G +S KV + S+GYGF+
Sbjct: 120 YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQ-SKGYGFV 178
Query: 121 EFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVT 179
++ + AA+ + NG M ++ + + + FT ++V +L+ ++
Sbjct: 179 QYDTDEAAQGAIDKLNG--MLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLS 236
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
D L + F + ++ D G+SKG+GFV F + + R++ +NG +
Sbjct: 237 DEELNKVF-GEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEW 294
Query: 240 RIGPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG 296
+G A K + Q+++++ + SQG N ++V LD SVTDD L+ F
Sbjct: 295 FVGKAQKKSERETELKQKFEQSLKEAADKSQGSN------LYVKNLDESVTDDKLREHFA 348
Query: 297 QYGELVHVKI---PAG--KRCGFVQFA 318
+G + K+ P+G + GFV F+
Sbjct: 349 PFGTITSCKVMRDPSGVSRGSGFVAFS 375
Score = 165 (63.1 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 50/195 (25%), Positives = 92/195 (47%)
Query: 67 DASSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
D S + ++ ++++ +L + + + +FG G S ++R+ + S+G+GF+ F +
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFEN 273
Query: 125 HAAAERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGD 173
A R + NG +E+ L + + D ++V +
Sbjct: 274 SDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKN 333
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L VTD L+E F A + ++ KV+ D +G S+G GFV F E R++TEMNG +
Sbjct: 334 LDESVTDDKLREHF-APFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKM 391
Query: 234 CSTRPMRIGPAATKK 248
T+P+ + A K+
Sbjct: 392 IVTKPLYVALAQRKE 406
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 200 (75.5 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 53/189 (28%), Positives = 99/189 (52%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
L++G+L + S ++ IFG G V +++ +K T+ S G+GF+ S A+ +Q F
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 136 NGTQMPSTEQNFRLNWATYGAGERRQ-------DDGPDFT-----IFVGDLAADVTDYVL 183
N +Q+ + ++N+ G + D+ + ++ G+L ++T L
Sbjct: 178 NSSQIGG--RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGL 235
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS-MTEMNGVLCSTRPMRIG 242
++ F V GAKV+ +R TGRS+G+GF+ F + +E ++S + MNGV R +R+
Sbjct: 236 KDAF-GDQPGVLGAKVIYERNTGRSRGFGFISF-ESAENVQSALATMNGVEVEGRALRLN 293
Query: 243 PAATKKAAT 251
A+ ++ T
Sbjct: 294 LASEREKPT 302
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
Q G + ++VG+L +T L + F +V ++V D+ T RS+G+GFV G
Sbjct: 110 QASGEEGRLYVGNLPYTITSSELSQIFGEA-GTVVDVQIVYDKVTDRSRGFGFVTMGSIE 168
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
E +M N R +++ + + + N + + P+ ++ G
Sbjct: 169 EAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV--DSPHK--VYAG 224
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKI 306
L ++T LK FG ++ K+
Sbjct: 225 NLGWNLTSQGLKDAFGDQPGVLGAKV 250
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 69/262 (26%), Positives = 125/262 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+G+GF+ F +
Sbjct: 91 PSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETE 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AAER ++ NG + + + F + + ER + G +FT +++ + + D
Sbjct: 149 EAAERAIEKMNGMLL-NDRKVFVGQFKS--RKEREAELGTRTKEFTNVYIKNFGDRMDDK 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L F + V KV+TD G+SKG+GFV F + +++ EMNG + + + +
Sbjct: 206 TLNGLFGR-FGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Query: 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
GPA KK + ++ Q TQ +G ++V LD + D+ L+ F +G +
Sbjct: 264 GPAQ-KKVDRHIELKRKFEQVTQ-DRGIRY-QGINLYVKNLDDGIDDERLQKEFSPFGTI 320
Query: 302 VHVKIPA----GKRCGFVQFAN 319
K+ K GFV F++
Sbjct: 321 TSTKVMTEGGRSKGFGFVCFSS 342
Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 56/174 (32%), Positives = 88/174 (50%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S +V R+ T S GY + F A AER L T
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ RR G +F+ +L + + L +TF A + ++
Sbjct: 72 MNFDVIKG--KPVRIMWSQRDPSLRRSGVG---NVFIKNLNKTIDNKALYDTFSA-FGNI 125
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
KVV D G SKG+GFV F E R++ +MNG+L + R + +G ++K
Sbjct: 126 LSCKVVCDEN-G-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Score = 174 (66.3 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 49/185 (26%), Positives = 97/185 (52%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I + M++ + +FG G+ +S KV+ ++ S+G+GF+ F H A++ +
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGK-SKGFGFVSFERHEDAQKAVDE 250
Query: 135 FNGTQM--------PSTEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ P+ ++ R + QD G + ++V +L + D L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
Q+ F + + ++ KV+T+ GRSKG+GFV F E ++++EMNG + +T+P+ +
Sbjct: 311 QKEF-SPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 244 AATKK 248
A K+
Sbjct: 368 AQRKE 372
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 205 (77.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/174 (28%), Positives = 89/174 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E ++ IF G + +V R+ T S Y ++ + + A AER L T
Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDT 70
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R+ G +F+ +L + L +TF A + ++
Sbjct: 71 LNNT--PIRGKACRIMWSQRDPSLRKSGVG---NVFIKNLDKGIDHKALYDTFSA-FGNI 124
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
KVVTD SKG+GFV + + +++ ++NG++ + + + +GP + K
Sbjct: 125 LSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSK 177
Score = 186 (70.5 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 60/238 (25%), Positives = 117/238 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ + N S+G+GF+ + +
Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+A++ + NG M + ++ F + + + ER Q FT +F +L+ DV L+
Sbjct: 149 ESADKAIAKVNG-MMINGQKVFVGPFKS--SKERGQPTEVKFTNVFFKNLSEDVGPDQLK 205
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGP 243
E + Y + ++ D G+SKG+GF F + +E +++ E NG + +P+ G
Sbjct: 206 ELLQQ-YGEITNITIMAD-DKGKSKGFGFANF-ESAEAAKNVVENENGKIFHGKPIYAGR 262
Query: 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
A +K + K T++ QG N +++ +D S+ +D L+ VF Q+G +
Sbjct: 263 A--QKKIEREAELKHTFETKY--QGVN------LYIKNIDDSIDNDKLREVFSQFGTI 310
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 39/151 (25%), Positives = 70/151 (46%)
Query: 114 SEGYGFIEFVSHAAAERVLQTFNGTQMPSTE-QNFRLNWATYGAGERRQDDGPDF---TI 169
S+G+GF F S AA+ V++ NG R E + + +
Sbjct: 227 SKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNL 286
Query: 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229
++ ++ + + L+E F + + ++ A V+ D SKG+GFV + E R++TEM
Sbjct: 287 YIKNIDDSIDNDKLREVF-SQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 230 NGVLCSTRPMRIGPAATK---KAATGQQYQK 257
NG + T+P+ + A K +A Q+Q+
Sbjct: 346 NGRMIGTKPLYVALAQRKDIRRAQLEMQHQQ 376
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 194 (73.4 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 63/254 (24%), Positives = 118/254 (46%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
APDA +G+ ++++ +L + + + +F G VS KV + S GYGF++F
Sbjct: 103 APDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQ 161
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVL 183
AA +QT N T + E + + R +T +++ +L ADV++ +L
Sbjct: 162 EDAAHAAIQTLNSTIVADKE----IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLL 217
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F A + + + D +GY FV F + + R+ +NG ++ + +G
Sbjct: 218 REKF-AEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGR 275
Query: 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303
A +K A +Q + ++ Q + + I+V ++ +VT++ L+ F Q G +
Sbjct: 276 A--QKKAEREQLLREQFKEKHEEQ-KMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITS 332
Query: 304 VKIPA---GKRCGF 314
K+ GK GF
Sbjct: 333 TKLMCDEKGKSKGF 346
Score = 183 (69.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 54/213 (25%), Positives = 96/213 (45%)
Query: 65 APDASSDG-----IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGF 119
A DASS G SL++GDL P + E + F S ++ ++ + S YG+
Sbjct: 10 AADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGY 69
Query: 120 IEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVT 179
F+S A ++ N + + + R+ W+ RR G +FV +L VT
Sbjct: 70 ANFLSRQDANLAIEKKNNSLLNG--KMIRVMWSVRAPDARRNGVG---NVFVKNLPESVT 124
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
+ VLQ+ F+ + ++ KV T G+S+GYGFV+F E ++ +N + + + +
Sbjct: 125 NAVLQDMFKK-FGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182
Query: 240 RIGP--AATKKAATGQQYQKATYQNTQGSQGEN 270
+G T + ++Y +N E+
Sbjct: 183 YVGKFMKKTDRVKPEEKYTNLYMKNLDADVSED 215
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 45/193 (23%), Positives = 83/193 (43%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ +L + E + F G+ VS + ++ + GY F+ F + A R +T
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAET 260
Query: 135 FNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NGT+ S E+ L E ++ I+V ++ VT+ L
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F ++ K++ D G+SKG+GFV F E + ++ +G + +P+ +
Sbjct: 321 RKHFSQC-GTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA- 377
Query: 244 AATKKAATGQQYQ 256
A KK Q Q
Sbjct: 378 IAQKKEDRKMQLQ 390
Score = 66 (28.3 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKR--C---GFVQFAN 319
T +++ LD V++D+L+ F ++G++V + I + C FV F N
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 196 (74.1 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 69 VTAKDAERAINTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRSMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 203 (76.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 64/265 (24%), Positives = 129/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 SLKELF-SQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 197 (74.4 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 53/197 (26%), Positives = 96/197 (48%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A+ D +L + L M + S+FG GE S K++R+K T S GYGF+ ++
Sbjct: 38 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 97
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 98 AEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF 150
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG S T P+ + A
Sbjct: 151 -SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFAN 209
Query: 246 TKKAATGQQYQKATYQN 262
+ Q YQ+
Sbjct: 210 NPSQKSSQALLSQLYQS 226
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 52/172 (30%), Positives = 92/172 (53%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
L++G+L ++ +A +F G +VI N+ T+ S G+GF+ + AE+ ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 136 NGTQMPSTEQNFRLNWAT-YGAGERRQDDGPD--FTIFVGDLAADVTDYVLQETFRAVYS 192
N ++ + +N A G+ RQ D F I+VG+L DV L+ F + +
Sbjct: 175 NSFEVNG--RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHG 231
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
V A+VV+DR TGRS+G+GFV+ +E+E ++ ++G R +++ A
Sbjct: 232 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 201 (75.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 49/158 (31%), Positives = 82/158 (51%)
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
F IFVGDL+A++ L++ F + + +VV D T +SKGYGFV F +SE ++
Sbjct: 96 FHIFVGDLSAEIETQQLKDAFTP-FGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAI 154
Query: 227 TEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV 286
T MNG +R +R A K AT A ++ P N T++ GG++ ++
Sbjct: 155 TAMNGQWLGSRSIRTNWATRKPPATKAD-MNAKPLTFDEVYNQSSPTNCTVYCGGINGAL 213
Query: 287 T----DDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
+ ++IL+ F YG + +++ K FV+F+ +
Sbjct: 214 SGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTK 251
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 44/180 (24%), Positives = 82/180 (45%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL +E + F GE +V+R+ QT S+GYGF+ FV + AE +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 136 NGTQMPSTEQNFRLNWATYGAGERRQD--------------DGP-DFTIFVGDLAADVTD 180
NG + S ++ R NWAT + D P + T++ G + ++
Sbjct: 158 NGQWLGS--RSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSG 215
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
++ +E + +S G + + + KGY FVRF + ++ +N + +P++
Sbjct: 216 FLNEEILQKTFSPY-GT--IQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVK 272
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 203 (76.5 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 64/265 (24%), Positives = 129/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 131 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 188
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 189 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 245
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 246 SLKELF-SQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 303
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 304 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 357
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 358 GSITSAKVMLEDGRSKGFGFVCFSS 382
Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 225 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHED 283
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 344 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 400
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 401 KPLYVALAQRKEERKAHLTNQYMQ 424
Score = 159 (61.0 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 52/190 (27%), Positives = 88/190 (46%)
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 105 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 159
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 160 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 216
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI- 306
K + KA T +++ V D+ LK +F Q+G+ + VK+
Sbjct: 217 KEREAELGAKAK-------------EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 263
Query: 307 --PAGKRCGF 314
P+GK GF
Sbjct: 264 RDPSGKSKGF 273
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 195 (73.7 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 69 VTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 195 (73.7 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 55/192 (28%), Positives = 93/192 (48%)
Query: 64 VAPDASSD-GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+A D D G +L + L M + + S+F GE S K+IR+K S GYGF+ +
Sbjct: 9 MAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNY 68
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
V+ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 69 VTAKDAERAISTLNGLRLQS--KTIKVSYARPSSEVIK-----DANLYISGLPRTMTQKD 121
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+++ F + + ++V+ D+TTG S+G F+RF SE ++T NG P
Sbjct: 122 VEDMFSR-FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSSE 177
Query: 243 PAATKKAATGQQ 254
P K AA Q
Sbjct: 178 PITVKFAANPNQ 189
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 196 (74.1 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 94 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 145
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAAT 246
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG +T P+ + A
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 205
Query: 247 KKAATGQQYQKATYQN 262
T Q YQ+
Sbjct: 206 PSQKTNQAILSQLYQS 221
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 49/158 (31%), Positives = 85/158 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG L+ ++ D L+ F + V GA+V+ +R TG+S+GYG+V F +S +++
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHI-GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
EM G RP+ + + K A+ +A Q ++ P++T +F+G L +
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAK----QYGDSQSPPSDT-LFIGNLSFNAN 282
Query: 288 DDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319
D L VFG+YG ++ ++P K G+VQF++
Sbjct: 283 RDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSS 320
Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 52/186 (27%), Positives = 93/186 (50%)
Query: 66 PDASSDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
P AS++ +L++G L W ++++++ F H G + +VI + T S GYG+++F S
Sbjct: 160 PAASTEEPATLFVGRLS-WNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFES 218
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNW----ATYGAGERRQDDG-----PDFTIFVGDLA 175
+AAE+ L+ G ++ N ++ A+ +R + G P T+F+G+L+
Sbjct: 219 KSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLS 278
Query: 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235
+ L F Y +V +V T T + KG+G+V+F E ++ MNG
Sbjct: 279 FNANRDNLFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Query: 236 TRPMRI 241
RP R+
Sbjct: 338 GRPCRL 343
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 49/158 (31%), Positives = 85/158 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG L+ ++ D L+ F + V GA+V+ +R TG+S+GYG+V F +S +++
Sbjct: 169 TLFVGRLSWNIDDAWLKREFEHI-GGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
EM G RP+ + + K A+ +A Q ++ P++T +F+G L +
Sbjct: 228 EMQGKEIDGRPINLDMSTGKPHASKSNNDRAK----QYGDSQSPPSDT-LFIGNLSFNAN 282
Query: 288 DDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319
D L VFG+YG ++ ++P K G+VQF++
Sbjct: 283 RDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSS 320
Score = 198 (74.8 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 52/186 (27%), Positives = 93/186 (50%)
Query: 66 PDASSDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
P AS++ +L++G L W ++++++ F H G + +VI + T S GYG+++F S
Sbjct: 160 PAASTEEPATLFVGRLS-WNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFES 218
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNW----ATYGAGERRQDDG-----PDFTIFVGDLA 175
+AAE+ L+ G ++ N ++ A+ +R + G P T+F+G+L+
Sbjct: 219 KSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLS 278
Query: 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235
+ L F Y +V +V T T + KG+G+V+F E ++ MNG
Sbjct: 279 FNANRDNLFNVF-GEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIE 337
Query: 236 TRPMRI 241
RP R+
Sbjct: 338 GRPCRL 343
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 202 (76.2 bits), Expect = 3.1e-15, P = 3.1e-15
Identities = 64/265 (24%), Positives = 129/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 NLKELF-SQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 201 (75.8 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 64/265 (24%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 20 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 77
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA + ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 78 EAANKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 134
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 135 NLRELF-SQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 192
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 193 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 246
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 247 GSITSAKVMLEDGRSKGFGFVCFSS 271
Score = 166 (63.5 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 50/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 114 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHED 172
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG +M E+ L + R +++ +L
Sbjct: 173 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 232
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 233 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 289
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 290 KPLYVALAQRKEERKAHLTNQYMQ 313
Score = 136 (52.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 44/170 (25%), Positives = 79/170 (46%)
Query: 148 RLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR 207
R+ W+ R+ G +F+ +L + + L +TF A + ++ KVV D G
Sbjct: 12 RIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDEN-G- 65
Query: 208 SKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQ 267
SKGY FV F + +++ +MNG+L + R + +G ++K + KA
Sbjct: 66 SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK-------- 117
Query: 268 GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP---AGKRCGF 314
T +++ V D+ L+ +F Q+G+ + VK+ +GK GF
Sbjct: 118 -----EFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGF 162
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 180 (68.4 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 46/169 (27%), Positives = 87/169 (51%)
Query: 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEF 122
V + + D +L + L M + + S+FG GE S K++R+K T S GYGF+ +
Sbjct: 56 VESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNY 115
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
+ AE+ + T NG ++ + + ++++A + R D ++V L +T
Sbjct: 116 IDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKE 168
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG
Sbjct: 169 LEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 105 (42.0 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223
G + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E
Sbjct: 303 GTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 361
Query: 224 RSMTEMNGVLCSTRPMRIGPAATK 247
++ +NG R +++ +K
Sbjct: 362 MAIASLNGYRLGDRVLQVSFKTSK 385
Score = 99 (39.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS IR +L++ L M + + +F G ++ +++ ++ T S G GFI F
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 205
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE ++ NG + P + + +A
Sbjct: 206 EAEEAIKGLNGQKPPGATEPITVKFA 231
Score = 98 (39.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT-GRSKGYGFVRFGDESEQLRSMT 227
+ V L ++T L+ F ++ ++ K+V D+ T G+S GYGFV + D + +++
Sbjct: 68 LIVNYLPQNMTQEELKSLFGSI-GEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 228 EMNGVLCSTRPMRIGPAATKKAA 250
+NG+ T+ +++ A A+
Sbjct: 127 TLNGLRLQTKTIKVSYARPSSAS 149
Score = 60 (26.2 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 356
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 201 (75.8 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 64/265 (24%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 SLKELF-SQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 196 (74.1 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 61/250 (24%), Positives = 119/250 (47%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
GI +++I +L ++ + F G+ +S KV+ +++ S+GYGF+ + AA+R
Sbjct: 96 GIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRA 153
Query: 132 LQTFNGTQM-PSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRA 189
++ NG + ST R E R+ +FT +++ + D+ D L+ F +
Sbjct: 154 IEEMNGKLLRDSTLFVARFKSRKDREAELREKPA-EFTNVYIKNFGDDMDDESLRSVF-S 211
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-- 247
Y KV+ D +G+SK +GFV F ++ +MNG + + + +G A K
Sbjct: 212 KYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVE 270
Query: 248 -KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+A + +++ + + Q +++ LD ++ D+ L+ F +G + VK+
Sbjct: 271 RQAELKEMFEQMKKERIRARQAAK------LYIKNLDDTIDDETLRKEFSVFGSICRVKV 324
Query: 307 --PAGKRCGF 314
AG+ GF
Sbjct: 325 MQEAGQSKGF 334
Score = 186 (70.5 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 53/189 (28%), Positives = 95/189 (50%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL + E + F G +S ++ R+ ++ S GYG++ F+ A++ L+T
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + ++ RL W+ A R+ G +F+ +L + + L E F + + +
Sbjct: 71 MNFDLIKG--KSIRLMWSQRDACLRKSGIG---NVFIKNLDKSIDNKTLYEHF-SPFGKI 124
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+KV+TD G SKGYGFV + D+ R++ EMNG L + + ++K +
Sbjct: 125 MSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAEL 182
Query: 255 YQK-ATYQN 262
+K A + N
Sbjct: 183 REKPAEFTN 191
Score = 139 (54.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 41/168 (24%), Positives = 80/168 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + S+F G+ +S KV+++ S+ +GF+ F SH AA+ ++ NG +
Sbjct: 201 MDDESLRSVFSKYGQTLSVKVMKDASGK-SKRFGFVSFDSHKAAKNAVEDMNGRDINGQT 259
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R +++ +L + D L++ F +V+ S
Sbjct: 260 IFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRKEF-SVFGS 318
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ KV+ + G+SKG+G + F ++M EMNG + ++P+ I
Sbjct: 319 ICRVKVMQE--AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNI 364
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 42/154 (27%), Positives = 74/154 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+ +L + + L E F + + + +KV+TD G SKGYGFV + D+ R++ E
Sbjct: 100 VFIKNLDKSIDNKTLYEHF-SPFGKIMSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEE 156
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG L + + ++K + + E T +++ + D
Sbjct: 157 MNGKLLRDSTLFVARFKSRK-------------DREAELREKPAEFTNVYIKNFGDDMDD 203
Query: 289 DILKTVFGQYGELVHVKI---PAGK--RCGFVQF 317
+ L++VF +YG+ + VK+ +GK R GFV F
Sbjct: 204 ESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSF 237
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 201 (75.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 64/265 (24%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA + ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAANKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 NLRELF-SQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 198 (74.8 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 166 (63.5 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 50/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG +M E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 201 (75.8 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 64/265 (24%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 SLKELF-SQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 201 (75.8 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 64/265 (24%), Positives = 128/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA + ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAANKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG S + + +
Sbjct: 206 NLRELF-SQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 198 (74.8 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 166 (63.5 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 50/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG +M E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 42/127 (33%), Positives = 69/127 (54%)
Query: 114 SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGD 173
++ Y F+EF H A L NG ++ E ++NWAT + +++ D F +FVGD
Sbjct: 8 NDPYCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGD 64
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L+ ++T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G
Sbjct: 65 LSPEITTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQW 123
Query: 234 CSTRPMR 240
R +R
Sbjct: 124 LGGRQIR 130
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 107 (42.7 bits), Expect = 6.1e-15, Sum P(3) = 6.1e-15
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 263
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 264 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 290
Score = 107 (42.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 428
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 429 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 455
Score = 107 (42.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 98
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 125
Score = 101 (40.6 bits), Expect = 6.1e-15, Sum P(3) = 6.1e-15
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + M+E+ I S FG G K+I N+ T S+GYGF+ FV+ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 135 ---FNGTQM 140
F+G ++
Sbjct: 100 QIHFHGKKL 108
Score = 101 (40.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + M+E+ I S FG G K+I N+ T S+GYGF+ FV+ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 135 ---FNGTQM 140
F+G ++
Sbjct: 265 QIHFHGKKL 273
Score = 93 (37.8 bits), Expect = 6.1e-15, Sum P(3) = 6.1e-15
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 243 PAAT-KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
P +T + A+ Q A Q +G+ PN T+FVGG+D + + + + FG+YG +
Sbjct: 339 PNSTISREASTQSSSAAASQGWVLPEGKIVPN--TVFVGGIDARMDETEIGSCFGRYGSV 396
Query: 302 VHVKI-----PAGKRCGFVQFAN 319
VKI K GFV F N
Sbjct: 397 KEVKIITNRTGVSKGYGFVSFVN 419
Score = 93 (37.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 243 PAAT-KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
P +T + A+ Q A Q +G+ PN T+FVGG+D + + + + FG+YG +
Sbjct: 174 PNSTISREASTQSSSAAASQGWVLPEGKIVPN--TVFVGGIDARMDETEIGSCFGRYGSV 231
Query: 302 VHVKI-----PAGKRCGFVQFAN 319
VKI K GFV F N
Sbjct: 232 KEVKIITNRTGVSKGYGFVSFVN 254
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 199 (75.1 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 63/265 (23%), Positives = 129/265 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ N S+GY F+ F +
Sbjct: 91 PSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDY 181
AA++ ++ NG + + + F + + ER + G +FT +++ + +V D
Sbjct: 149 EAADKAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDE 205
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + + KV+ D +G+SKG+GFV + + +++ EMNG + + + +
Sbjct: 206 NLKELF-SQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K +A +++++ + QG N +++ LD ++ D+ L+ F +
Sbjct: 264 GRAQKKVERQAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPF 317
Query: 299 GELVHVKIPA----GKRCGFVQFAN 319
G + K+ K GFV F++
Sbjct: 318 GSITSAKVMLEDGRSKGFGFVCFSS 342
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 57/191 (29%), Positives = 94/191 (49%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D G SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDEN-G-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKA 258
K + KA
Sbjct: 177 KEREAELGAKA 187
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 200 (75.5 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 53/198 (26%), Positives = 96/198 (48%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P AS+ SL++G+L P + E+ + +F G S +V R+ T S GY ++ + +
Sbjct: 57 PQASA----SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTT 112
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A E+ L+ N T + + R+ W+ R+ G +F+ +L + + L +
Sbjct: 113 ADGEKALEELNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHD 167
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KV D G SKGYGFV + + +++ +NG+L + + + +G
Sbjct: 168 TF-AAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHI 225
Query: 246 TKKAATGQ-QYQKATYQN 262
KK + KA + N
Sbjct: 226 PKKDRQSKFDEMKANFTN 243
Score = 192 (72.6 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 56/245 (22%), Positives = 113/245 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 141 PALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETD 199
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA + ++ NG + + + + + +FT I+V ++ +VTD +
Sbjct: 200 EAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFR 259
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
F Y V + + D+ TG+S+G+GFV F + +++ E+N + + +G A
Sbjct: 260 TLFEK-YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + + Y+ A + QG N +++ LD V D+ L+ +F ++G +
Sbjct: 319 QKKHEREEELRKSYEAARQEKASKYQGVN------LYIKNLDDEVDDEKLRQLFSEFGPI 372
Query: 302 VHVKI 306
K+
Sbjct: 373 TSAKV 377
Score = 154 (59.3 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 44/155 (28%), Positives = 74/155 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+ +L + + L +TF A + ++ KV D G SKGYGFV + + +++
Sbjct: 151 VFIKNLDVAIDNKALHDTF-AAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKH 208
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
+NG+L + + + +G KK + Q E N T I+V ++P VTD
Sbjct: 209 VNGMLLNEKKVYVGHHIPKK-------------DRQSKFDEMKANFTNIYVKNINPEVTD 255
Query: 289 DILKTVFGQYGELVHVKIP----AGKRCGFVQFAN 319
D +T+F +YG++ + GK GF F N
Sbjct: 256 DEFRTLFEKYGDVTSSSLARDQETGKSRGF-GFVN 289
Score = 121 (47.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 36/167 (21%), Positives = 74/167 (44%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
D ++++ ++ P + + ++F G+ S + R+++T S G+GF+ F SH
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 127 AAERVLQTFN-----------GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLA 175
A + +Q N G E+ L + A + + +++ +L
Sbjct: 295 DASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLD 354
Query: 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
+V D L++ F + + + AKV+ D T + G + G+ESE+
Sbjct: 355 DEVDDEKLRQLF-SEFGPITSAKVMRDSITEPGEE-GESKEGEESEK 399
Score = 84 (34.6 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 206 GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQN 262
G+SKG+GFV F + + +++ EMN + + +P+ + A K Q Q +N
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLEQSIQARN 486
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 194 (73.4 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 AVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 100 (40.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D ++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DAAVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 62/259 (23%), Positives = 119/259 (45%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G ++++ +L ++ + +F G+ +S KV R+ + S+GYGF++F S
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSD 81
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+ NGT + +N ++ + + D FT ++V +L TD L+
Sbjct: 82 LSVYTACNFHNGTLI----RNQHIHVCPF-VSRGQWDKSRVFTNVYVKNLVETATDADLK 136
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
F + + A V+ D G+S+ +GFV F + ++ +MNGV+ + + +G A
Sbjct: 137 RLF-GEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRA 194
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
K T + KA ++ + + ++V LD SV + L+ +F ++G +
Sbjct: 195 QRKTNRT--EDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSC 252
Query: 305 KIPA-----GKRCGFVQFA 318
K+ K GFV+F+
Sbjct: 253 KVMVHSNGISKGVGFVEFS 271
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 43/186 (23%), Positives = 82/186 (44%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++ + +FG GE S V+++ + S +GF+ F AA ++
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SRRFGFVNFEKAEAAVTAIEK 178
Query: 135 FNGTQMPSTEQNF-RLNWATYGAGE-----------RRQDDGPDFTIFVGDLAADVTDYV 182
NG + E + R T + R ++V +L V +
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
L+E F + + ++ KV+ + G SKG GFV F E ++M +MNG + +P+ +
Sbjct: 239 LEELF-SEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 243 PAATKK 248
A K+
Sbjct: 297 LAQCKE 302
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 45/163 (27%), Positives = 85/163 (52%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
+ D +L + L M + + S+FG GE S K++R+K T S GYGF+ ++ A
Sbjct: 34 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
E+ + T NG ++ + + ++++A + R D ++V L +T L++ F
Sbjct: 94 EKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSGLPKTMTQKELEQLF- 145
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
+ Y + ++++ D+ TG S+G GF+RF E ++ +NG
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 107 (42.7 bits), Expect = 0.00050, P = 0.00050
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+ V L ++T L+ F ++ ++ K+V D+ TG+S GYGFV + D + +++
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSI-GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 229 MNGVLCSTRPMRIGPAATKKAA 250
+NG+ T+ +++ A A+
Sbjct: 100 LNGLRLQTKTIKVSYARPSSAS 121
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 194 (73.4 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 194 (73.4 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 50/184 (27%), Positives = 95/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ + +++ T +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ A + D G + IF+G+L ++ + +L +TF A +
Sbjct: 74 MNMIKLYG--KPIRVNKAS--AHNKNLDVGAN--IFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D TG SKGY F+ F ++ MNG RP+ + A KK + G++
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS-YAFKKDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGSA 190
Score = 105 (42.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D T++VG L V++ +L E F V + DR TG+ +GYGFV F E + +
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQA-GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ MN + +P+R+ A+
Sbjct: 71 IKIMNMIKLYGKPIRVNKAS 90
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KI---P-AG 309
Y K N + +N IF+G LDP + + +L F +G ++ KI P G
Sbjct: 80 YGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG 139
Query: 310 KRCG--FVQFAN 319
G F+ FA+
Sbjct: 140 NSKGYAFINFAS 151
>GENEDB_PFALCIPARUM|PFF1425w [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 69 SSDGIRSLWIGDLQPW----MEESYI--ASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+S ++LW+GDL+ ++E+YI + + + K+ + K +N Y FIEF
Sbjct: 18 NSYNTKTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEF 76
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER----------RQDDGPDFTIFVG 172
++ A+ + NG +P F+LNWA Y + DD ++I+VG
Sbjct: 77 STYEVAKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVG 136
Query: 173 DLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232
L + T ++ F +Y+S+ K++ + K Y F+ F + E LR++TEMNG
Sbjct: 137 SLPINTTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGY 196
Query: 233 L 233
+
Sbjct: 197 I 197
>UNIPROTKB|C6KTC9 [details] [associations]
symbol:PFF1425w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966276.1
ProteinModelPortal:C6KTC9 EnsemblProtists:PFF1425w:mRNA
GeneID:3885734 KEGG:pfa:PFF1425w EuPathDB:PlasmoDB:PF3D7_0629400
ProtClustDB:CLSZ2515346 Uniprot:C6KTC9
Length = 780
Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 69 SSDGIRSLWIGDLQPW----MEESYI--ASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122
+S ++LW+GDL+ ++E+YI + + + K+ + K +N Y FIEF
Sbjct: 18 NSYNTKTLWVGDLEKIKDEVVDENYILYCMFYEFAEDIIRIKLCKEK-SNQKNSYAFIEF 76
Query: 123 VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGER----------RQDDGPDFTIFVG 172
++ A+ + NG +P F+LNWA Y + DD ++I+VG
Sbjct: 77 STYEVAKYCFEKLNGKWIPGKAHRFKLNWAKYNMSDNITTNEKDLNIEIDDKGTYSIYVG 136
Query: 173 DLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232
L + T ++ F +Y+S+ K++ + K Y F+ F + E LR++TEMNG
Sbjct: 137 SLPINTTKEEIENLFCNIYNSICFVKMIKNTQKSPHKIYCFIHFFNYDECLRALTEMNGY 196
Query: 233 L 233
+
Sbjct: 197 I 197
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 107 (42.7 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 263
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 264 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 290
Score = 107 (42.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 371 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 428
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 429 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 455
Score = 107 (42.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
T+FVG + A + + + F Y SVK K++T+RT G SKGYGFV F ++ + + +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGR-YGSVKEVKIITNRT-GVSKGYGFVSFVNDVDVQKIVG 98
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
+ + +++GPA K+ + Q
Sbjct: 99 SQ--IHFHGKKLKLGPAIRKQKLCARHVQ 125
Score = 101 (40.6 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + M+E+ I S FG G K+I N+ T S+GYGF+ FV+ ++++ +
Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 99
Query: 135 ---FNGTQM 140
F+G ++
Sbjct: 100 QIHFHGKKL 108
Score = 101 (40.6 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + M+E+ I S FG G K+I N+ T S+GYGF+ FV+ ++++ +
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQKIVGS 264
Query: 135 ---FNGTQM 140
F+G ++
Sbjct: 265 QIHFHGKKL 273
Score = 93 (37.8 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 243 PAAT-KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
P +T + A+ Q A Q +G+ PN T+FVGG+D + + + + FG+YG +
Sbjct: 339 PNSTISREASTQSSSAAASQGWVLPEGKIVPN--TVFVGGIDARMDETEIGSCFGRYGSV 396
Query: 302 VHVKI-----PAGKRCGFVQFAN 319
VKI K GFV F N
Sbjct: 397 KEVKIITNRTGVSKGYGFVSFVN 419
Score = 93 (37.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 243 PAAT-KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
P +T + A+ Q A Q +G+ PN T+FVGG+D + + + + FG+YG +
Sbjct: 174 PNSTISREASTQSSSAAASQGWVLPEGKIVPN--TVFVGGIDARMDETEIGSCFGRYGSV 231
Query: 302 VHVKI-----PAGKRCGFVQFAN 319
VKI K GFV F N
Sbjct: 232 KEVKIITNRTGVSKGYGFVSFVN 254
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + IF G+ S +V R+ + S GY ++ + + E+ ++
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N P + R+ W+ RR DG IF+ +L + + L +TF A + +
Sbjct: 113 LNYN--PIEGRPCRIMWSQRDPSARRSGDG---NIFIKNLHPAIDNKALHDTFSA-FGKI 166
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ- 253
KV TD G+SK +GFV + ++ +NG+L + R + +G +KK +
Sbjct: 167 LSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKF 225
Query: 254 QYQKATYQN 262
+ KA + N
Sbjct: 226 EEMKANFTN 234
Score = 178 (67.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 58/256 (22%), Positives = 119/256 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A G +++I +L P ++ + F G+ +S KV + + S+ +GF+ + +
Sbjct: 132 PSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETA 190
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AAE ++ NG + E + + + ++ +FT I+V ++ + ++ +
Sbjct: 191 EAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFE 250
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + + + D+ G+SKG+GFV F D ++++ E+N + + + +G A
Sbjct: 251 KLF-SPFGKITSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRA 308
Query: 245 ATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K+ + QY+ + QG N +FV LD ++ + L+ F +G +
Sbjct: 309 QKKRERLEELKKQYEAVRLEKLAKYQGVN------LFVKNLDDTIDSEKLEEEFKPFGTI 362
Query: 302 VHVKI---PAGKRCGF 314
K+ AGK GF
Sbjct: 363 TSAKVMVDEAGKSKGF 378
Score = 143 (55.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 51/199 (25%), Positives = 90/199 (45%)
Query: 80 DLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ 139
DL + EES+ +F G+ S + Q S+G+GF+ F H +A + ++ N +
Sbjct: 241 DLN-YSEESF-EKLFSPFGKITS-IYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKE 297
Query: 140 MP--------STEQNFRLNWAT--YGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
+ + ++ RL Y A + +FV +L + L+E F+
Sbjct: 298 INGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFK 357
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ ++ AKV+ D G+SKG+GFV F E +++TEMN + + +P+ + A K
Sbjct: 358 P-FGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKD 415
Query: 249 AATGQQYQKATYQNTQGSQ 267
Q Q+ +N Q
Sbjct: 416 VRRSQLEQQIQARNQMRMQ 434
Score = 117 (46.2 bits), Expect = 0.00042, P = 0.00042
Identities = 40/157 (25%), Positives = 75/157 (47%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D IF+ +L + + L +TF A + + KV TD G+SK +GFV + +
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSA-FGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAA 196
Query: 226 MTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPS 285
+ +NG+L + R + +G +KK +++ ++ E N T I+V +D +
Sbjct: 197 IENVNGMLLNDREVFVGKHISKKD------RESKFE-------EMKANFTNIYVKNIDLN 243
Query: 286 VTDDILKTVFGQYGELVHV---KIPAGKRCGFVQFAN 319
+++ + +F +G++ + K GK GF F N
Sbjct: 244 YSEESFEKLFSPFGKITSIYLEKDQDGKSKGF-GFVN 279
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 194 (73.4 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + A ER L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++
Sbjct: 103 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 156
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ- 253
KV D G SKGYGFV + ++ +NG+L + + + +G +KK +
Sbjct: 157 LSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKF 215
Query: 254 QYQKATYQN 262
+ KA + N
Sbjct: 216 EEMKANFTN 224
Score = 180 (68.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 56/245 (22%), Positives = 111/245 (45%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV ++ + S+GYGF+ + +
Sbjct: 122 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETA 180
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT I++ ++ +V D +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFR 240
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D + G+S+G+GFV F ++ EMN ++ + +G A
Sbjct: 241 KLFEK-FGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L V DD L+ +FG YG +
Sbjct: 299 QKKHEREEELRKQYEAARMEKASKYQGVN------LYVKNLTDDVDDDKLRELFGPYGTI 352
Query: 302 VHVKI 306
K+
Sbjct: 353 TSAKV 357
Score = 135 (52.6 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 41/155 (26%), Positives = 73/155 (47%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+ +L + + + L +TF A + ++ KV D G SKGYGFV + ++
Sbjct: 132 VFIKNLDSAIDNKALHDTF-AAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKH 189
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
+NG+L + + + +G +KK + Q E N T I++ +DP V D
Sbjct: 190 VNGMLLNDKKVFVGHHISKK-------------DRQSKFEEMKANFTNIYIKNIDPEVED 236
Query: 289 DILKTVFGQYGELVHVKIPA---GKR--CGFVQFA 318
+ + +F ++GE+ + GK GFV F+
Sbjct: 237 EEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFS 271
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 53/204 (25%), Positives = 95/204 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S ++ R+K T S GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ R+ G +F+ +L + + L F A + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AAT 251
KV D G KGYGFV F + R++ MNG+ + R + +G + K A
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 252 GQQYQKATYQNTQGSQGENDPNNT 275
G +++T + + + + D T
Sbjct: 175 GAWARQSTSADVKDFEEDTDEEAT 198
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 53/204 (25%), Positives = 95/204 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S ++ R+K T S GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ R+ G +F+ +L + + L F A + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AAT 251
KV D G KGYGFV F + R++ MNG+ + R + +G + K A
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 252 GQQYQKATYQNTQGSQGENDPNNT 275
G +++T + + + + D T
Sbjct: 175 GAWARQSTSADVKDFEEDTDEEAT 198
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 53/204 (25%), Positives = 95/204 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S ++ R+K T S GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ R+ G +F+ +L + + L F A + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AAT 251
KV D G KGYGFV F + R++ MNG+ + R + +G + K A
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 252 GQQYQKATYQNTQGSQGENDPNNT 275
G +++T + + + + D T
Sbjct: 175 GAWARQSTSADVKDFEEDTDEEAT 198
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 183 (69.5 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 53/183 (28%), Positives = 86/183 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P S SL++GDL P + E+ + F G +S ++ R+ T+ S Y ++ F
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
AE L T N + + R+ W+ R+ G IFV +L + + L +
Sbjct: 63 KDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
T A + ++ VV D G SKGYGFV F R++ +MNG+L + R + +G
Sbjct: 118 TVSA-FGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 161 (61.7 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 43/169 (25%), Positives = 81/169 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ ++++ +L + + G +S V+ ++ N S+GYGF+ F +H
Sbjct: 91 PSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQ---NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYV 182
AAER ++ NG + + F+ R + P+ +++ + D+ D
Sbjct: 149 EAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPN--VYIKNFGEDMDDER 206
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
L++ F + KV+TD + G+SKG+GFV F + +++ EMNG
Sbjct: 207 LKDLF-GKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 136 (52.9 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 42/149 (28%), Positives = 73/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IFV +L + + L +T A + ++ VV D G SKGYGFV F R++ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G++ + PN +++ + D
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAEL----------GARAKEFPN---VYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 175 (66.7 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 49/183 (26%), Positives = 87/183 (47%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+ T NG ++ S + ++++A + + D +++ L +T +++ F +
Sbjct: 78 INTLNGLRLQS--KTIKVSFARPSSETIK-----DANLYISGLPRTMTQKDVEDMFLP-F 129
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251
+ ++V+ D+ TG S+G F+RF SE ++ NG P P K AA
Sbjct: 130 GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAAN 186
Query: 252 GQQ 254
Q
Sbjct: 187 PNQ 189
Score = 51 (23.0 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IF+ L + IL +FG +G + +VK+ +C GFV N
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 53/204 (25%), Positives = 95/204 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S ++ R+K T S GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ R+ G +F+ +L + + L F A + ++
Sbjct: 63 LNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AAT 251
KV D G KGYGFV F + R++ MNG+ + R + +G + K A
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 252 GQQYQKATYQNTQGSQGENDPNNT 275
G +++T + + + + D T
Sbjct: 175 GAWARQSTSADVKDFEEDTDEEAT 198
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 188 (71.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 55/190 (28%), Positives = 94/190 (49%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P+ S + L++G+L + +A +F G +VI N++T+ S G+GF+ S
Sbjct: 144 PEPSEEA--KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWAT-YGAGERRQDD--GPDFTIFVGDLAADVTDYV 182
AE ++ FN + + +N A G+ R P F ++VG+L DV +
Sbjct: 202 DEAETAVEKFNRYDLNG--RLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGR 259
Query: 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
L++ F + + V A+VV DR TGRS+G+GFV D E +++ ++G R +R+
Sbjct: 260 LEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Query: 243 PAATKKAATG 252
A + G
Sbjct: 319 VAEERPPRRG 328
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 53/204 (25%), Positives = 95/204 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + ES + F G +S ++ R+K T S GY ++ + A+R L+T
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + R+ W+ R+ G +F+ +L + + L F A + ++
Sbjct: 63 MNFDVING--RPVRIMWSQRDPSLRKSGVG---NVFIKNLGKTIDNKALYNIFSA-FGNI 116
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AAT 251
KV D G KGYGFV F + R++ +NG+ + R + +G + K A
Sbjct: 117 LSCKVACDEK-G-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAER 174
Query: 252 GQQYQKATYQNTQGSQGENDPNNT 275
G +++T + + ++D T
Sbjct: 175 GAWARQSTSADFKDFDDDSDDEAT 198
>FB|FBgn0037342 [details] [associations]
symbol:CG2931 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
HSSP:P09651 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
EMBL:AY071420 RefSeq:NP_649552.1 UniGene:Dm.1071 SMR:Q9VND7
IntAct:Q9VND7 MINT:MINT-754250 EnsemblMetazoa:FBtr0078753
GeneID:40673 KEGG:dme:Dmel_CG2931 UCSC:CG2931-RA
FlyBase:FBgn0037342 InParanoid:Q9VND7 OMA:RAMKEMD OrthoDB:EOG4DJHC6
GenomeRNAi:40673 NextBio:819972 Uniprot:Q9VND7
Length = 302
Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 45/123 (36%), Positives = 67/123 (54%)
Query: 121 EFVSHAAAERVLQTFNGTQMPSTEQN-FRLNWATYGAGERRQD-DGPDFTIFVGDLAADV 178
E + A A LQ+F T+ ++ R+ T D DF IF GDL DV
Sbjct: 150 EAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDV 209
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
D VL TF + S + A+VV D+ TG+SKG+GFV F + ++ +R+M EM+G +RP
Sbjct: 210 NDEVLTRTFNK-FPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRP 268
Query: 239 MRI 241
+++
Sbjct: 269 IKL 271
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 115 (45.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
+ +KG VV D G SKGYGFV F + R++ +MNG+L + R + +G ++K
Sbjct: 69 FDVIKGKPVVCDEN-G-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK-- 124
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+ G T +++ + D+ LK +FG++G + VK+
Sbjct: 125 -----------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKV 169
Score = 106 (42.4 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+ + F G +S +V R+ T S GY ++ F A AER L T
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 135 FN 136
N
Sbjct: 67 MN 68
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 189 (71.6 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 62/256 (24%), Positives = 125/256 (48%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I +L ++ + F G +S KV+ ++ N S+GY F+ F + AA++ ++
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 59
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT-IFVGDLAADVTDYVLQETFRAV 190
NG + + + F + + ER + G +FT +++ + +V D L+E F +
Sbjct: 60 MNGMLL-NDRKVFVGRFKS--RKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF-SQ 115
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK--- 247
+ KV+ D G+SKG+GFV + + +++ EMNG S + + +G A K
Sbjct: 116 FGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 174
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307
+A +++++ + QG N +++ LD ++ D+ L+ F +G + K+
Sbjct: 175 QAELKRKFEQLKQERISRYQGVN------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 228
Query: 308 A----GKRCGFVQFAN 319
K GFV F++
Sbjct: 229 LEDGRSKGFGFVCFSS 244
Score = 164 (62.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 49/204 (24%), Positives = 96/204 (47%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 87 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHED 145
Query: 128 AERVLQTFNGTQMPS-----------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 146 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 205
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 206 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 262
Query: 237 RPMRIGPAATK---KAATGQQYQK 257
+P+ + A K KA QY +
Sbjct: 263 KPLYVALAQRKEERKAHLTNQYMQ 286
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 188 (71.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 51/168 (30%), Positives = 92/168 (54%)
Query: 158 ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFG 217
++ ++ TIFVG L+ + D L++ F + V GA+V+ +R T RS+GYG+V F
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHI-GGVIGARVIYERGTDRSRGYGYVDFE 217
Query: 218 DESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTI 277
++S +++ EM G RP+ + +K A + +K + +T ++P++T +
Sbjct: 218 NKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKK--FGDTP-----SEPSDT-L 269
Query: 278 FVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319
F+G L + D + +F ++GE+V V+IP K G+VQF+N
Sbjct: 270 FLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSN 317
Score = 181 (68.8 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 45/202 (22%), Positives = 99/202 (49%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L +++ ++ F H G + +VI + T+ S GYG+++F + + AE+ +Q
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228
Query: 135 FNGTQMPSTEQNFRLNWAT-YGAGERRQDDG-----PDFTIFVGDLAADVTDYVLQETFR 188
G ++ N ++ + G +R + G P T+F+G+L+ + + E F
Sbjct: 229 MQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELF- 287
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
A + V ++ T T + KG+G+V+F + + +++ + G RP+R+ ++ +
Sbjct: 288 AKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347
Query: 249 AATGQQYQKATYQNTQGSQGEN 270
G + + G +G N
Sbjct: 348 NNDGGRGGSRGFGGRGGGRGGN 369
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 44/152 (28%), Positives = 80/152 (52%)
Query: 107 RNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPD 166
+++ T +GYGF+EF+S A+ ++ N ++ + R+N A+ A + D G +
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYG--KPIRVNKAS--AHNKNLDVGAN 58
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
IF+G+L ++ + +L +TF A ++ K++ D TG SKGY F+ F ++
Sbjct: 59 --IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 116
Query: 227 TEMNGVLCSTRPMRIGPAATKKAATGQQYQKA 258
MNG RP+ + A KK + G+++ A
Sbjct: 117 EAMNGQYLCNRPITVS-YAFKKDSKGERHGSA 147
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 185 (70.2 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 61/242 (25%), Positives = 114/242 (47%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + +F G V+ V +++ TN + YGFIE+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+N A+ ++ D G + +F+G+L DV + +L +TF A
Sbjct: 86 LNMIKLHG--KPIRVNKASQD--KKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
K++ D TG S+G+GF+ + ++ M G S R + + A KK G++
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVS-YAYKKDTKGER 198
Query: 255 Y---QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI--LKTVFGQYGELVHVKIPAG 309
+ + T + ++ P+ T+F G PS + L F G + V IPA
Sbjct: 199 HGTPAERLLAATNPTAQKSRPH--TLFAMG-PPSSAPQVNGLPRPFAN-GSMQPVPIPAP 254
Query: 310 KR 311
++
Sbjct: 255 RQ 256
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 188 (71.2 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 52/199 (26%), Positives = 94/199 (47%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P ++ SL++G+L P + E+ + +F G S +V R+ T S GY ++ F +
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
E+ L N T + + R+ W+ R+ G +F+ +L + + L +
Sbjct: 132 EDGEKALDELNYTLIKG--RPCRIMWSQRDPSLRKMGTG---NVFIKNLDPAIDNKALHD 186
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE-MNGVLCSTRPMRIGPA 244
TF A + + KV D G +KGYGFV F D E + E +NG+L + + + +G
Sbjct: 187 TFSA-FGKILSCKVAVDEL-GNAKGYGFVHF-DSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 245 ATKKAATGQ-QYQKATYQN 262
+++ + + KA + N
Sbjct: 244 VSRRERQSKVEALKANFTN 262
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 47/200 (23%), Positives = 96/200 (48%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
+A +++I +L + E + +FG GE S ++++ Q + G+GF+ + +H
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Query: 127 AAERVLQTFN-----GTQM--------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGD 173
A++ + N G ++ E+ R + + + G + +F+ +
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVN--LFIKN 370
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L +V D L+ F A + ++ AK++TD G+SKG+GFV + E +++TEMN +
Sbjct: 371 LQDEVDDERLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRM 428
Query: 234 CSTRPMRIGPAATKKAATGQ 253
+ +P+ + A K+ Q
Sbjct: 429 LAGKPLYVALAQRKEVRRSQ 448
Score = 162 (62.1 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 54/253 (21%), Positives = 113/253 (44%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G+ +S KV ++ N ++GYGF+ F S
Sbjct: 160 PSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSV 218
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+A ++ NG + + + + + + +FT +++ +L ++T+
Sbjct: 219 ESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFS 278
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + +V D+ + +G+GFV + + +++ E+N + + +G
Sbjct: 279 DLF-GQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVG-R 335
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
A KK ++ +K Y+ + + N +F+ L V D+ LK F +G +
Sbjct: 336 AQKKHEREEELRKR-YEQMK-LEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSA 393
Query: 305 KIPA---GKRCGF 314
KI GK GF
Sbjct: 394 KIMTDEQGKSKGF 406
Score = 134 (52.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 40/157 (25%), Positives = 73/157 (46%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+ +L + + L +TF A + + KV D G +KGYGFV F D E + E
Sbjct: 170 VFIKNLDPAIDNKALHDTFSA-FGKILSCKVAVDEL-GNAKGYGFVHF-DSVESANAAIE 226
Query: 229 -MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
+NG+L + + + +G +++ ++ K N T +++ LD +T
Sbjct: 227 HVNGMLLNDKKVYVGHHVSRR----ERQSKVEALKA---------NFTNVYIKNLDTEIT 273
Query: 288 DDILKTVFGQYGELVHVKIPAGKR-----CGFVQFAN 319
+ +FGQ+GE+ + + + GFV +AN
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 181 (68.8 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 61/216 (28%), Positives = 105/216 (48%)
Query: 112 NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGP---DFT 168
N S+GYGF+ F + AAER ++ NG + + + F + + ER + G +FT
Sbjct: 7 NGSKGYGFVHFETQEAAERAIEKMNGMLL-NDRKVFVGRFKS--RKEREAELGARAKEFT 63
Query: 169 -IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
+++ + D+ D L++ F S KV+TD + G+SKG+GFV F + +++
Sbjct: 64 NVYIKNFGEDMDDERLKDLFGPALS----VKVMTDES-GKSKGFGFVSFERHEDAQKAVD 118
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
EMNG + + + +G A KK + ++ Q Q N ++V LD +
Sbjct: 119 EMNGKELNGKQIYVG-RAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGID 175
Query: 288 DDILKTVFGQYGELVHVKI--PAG--KRCGFVQFAN 319
D+ L+ F +G + K+ G K GFV F++
Sbjct: 176 DERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSS 211
Score = 149 (57.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 45/175 (25%), Positives = 86/175 (49%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 74 MDDERLKDLFGPA---LSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 129
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + R ++V +L + D L++ F + + +
Sbjct: 130 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEF-SPFGT 188
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
+ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 189 ITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 241
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 186 (70.5 bits), Expect = 8.5e-13, P = 8.5e-13
Identities = 50/154 (32%), Positives = 81/154 (52%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
QD T+FVG L+ +V D L + F Y ++ GA+V+ D +GRSKGYG+V F +
Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFEE-YGTIVGARVIMDGQSGRSKGYGYVDF-ETP 314
Query: 221 EQLRSMTEMNGVL-CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
E ++ NG R + + + + A Q Y + N G Q ++P++T +FV
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLD-LSNPRPANPQPYAQQRAGNF-GDQ-LSEPSDT-VFV 370
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
G L + T+D L T FG G++ +++P + G
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSG 404
Score = 178 (67.7 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 57/215 (26%), Positives = 102/215 (47%)
Query: 66 PDASSDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
P S+ ++++G L W +++ ++ F G V +VI + Q+ S+GYG+++F +
Sbjct: 255 PSQDSNETCTVFVGRLS-WNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Query: 125 HAAAERVLQTFNGT-QMPSTEQNFRLN---------WATYGAGE-RRQDDGPDFTIFVGD 173
AA+ + NGT ++ N L+ +A AG Q P T+FVG+
Sbjct: 314 PEAAKAAVAA-NGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGN 372
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L+ + T+ L F ++ ++ TD +GR KG+G+V F D + + EMNG
Sbjct: 373 LSFNATEDDLSTAFGGC-GDIQSIRLPTDPQSGRLKGFGYVTFSD-IDSAKKCVEMNGHF 430
Query: 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQG 268
+ RP R+ +T + G + + + G G
Sbjct: 431 IAGRPCRLD-FSTPRTGGGSRGGRGGFGGRGGFGG 464
>WB|WBGene00011589 [details] [associations]
symbol:T07F10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00510000047100 EMBL:Z77669 PIR:T24666
RefSeq:NP_506222.2 ProteinModelPortal:Q22318 SMR:Q22318
STRING:Q22318 PaxDb:Q22318 EnsemblMetazoa:T07F10.3 GeneID:179765
KEGG:cel:CELE_T07F10.3 UCSC:T07F10.3 CTD:179765 WormBase:T07F10.3
HOGENOM:HOG000018915 InParanoid:Q22318 OMA:CFANDSY NextBio:906768
Uniprot:Q22318
Length = 371
Score = 184 (69.8 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 63/234 (26%), Positives = 110/234 (47%)
Query: 74 RSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
R+LWIGD+ W EE+ ++ +F G KV R + +GY FIEF++ A + L
Sbjct: 68 RTLWIGDVPTDWTEET-LSQVFTECGH-APYKVKRVYVKDELKGYCFIEFITFDEARQTL 125
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
NG ++P + + R N A + + +F + V + D+ D L F Y
Sbjct: 126 YDLNGNRIPGFK-DIRFNLCF--ANDSYNPNS-EFNLHVSSVPDDMADAELYRIFDK-YQ 180
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV----------LCSTRPMRIG 242
S +GAK+ G SKG GFVRFG++++Q ++ EM+ L +R R+
Sbjct: 181 SCRGAKMFRF-VDGSSKGSGFVRFGNQTDQQMALVEMHRTKVGGCRIILKLAGSRGERLD 239
Query: 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG 296
+++ + + ++ ++ Q G P T ++ +P V + K ++G
Sbjct: 240 RGESRQFKSQRNDRRRDEKSGQYRNGTAVPQQTQVYDAYGNPVVVP-VDKNIYG 292
>WB|WBGene00021901 [details] [associations]
symbol:tag-262 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 HSSP:P09651
EMBL:FO081201 eggNOG:NOG306795 GeneTree:ENSGT00390000002894
RefSeq:NP_498090.1 ProteinModelPortal:Q9N394 SMR:Q9N394
IntAct:Q9N394 STRING:Q9N394 PaxDb:Q9N394 EnsemblMetazoa:Y54H5A.3
GeneID:175700 KEGG:cel:CELE_Y54H5A.3 UCSC:Y54H5A.3 CTD:175700
WormBase:Y54H5A.3 HOGENOM:HOG000239273 InParanoid:Q9N394
OMA:RAMREMD NextBio:889270 Uniprot:Q9N394
Length = 302
Score = 181 (68.8 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 42/111 (37%), Positives = 63/111 (56%)
Query: 144 EQNFRLNWATYGAGERRQD------DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA 197
EQ + + G G+ +D D DF +F GDL +V+D +L + FR Y S + A
Sbjct: 174 EQQAKKKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRK-YPSFQKA 232
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
KVV + T +SKGYGFV F D + +R+M EM+G RP+++ +A K+
Sbjct: 233 KVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKE 283
>UNIPROTKB|K7EQ03 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000592202 Uniprot:K7EQ03
Length = 426
Score = 183 (69.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 323 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 381
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 382 VRAMREMNGKYVGSRPIKL 400
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 156 (60.0 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 47/195 (24%), Positives = 90/195 (46%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + M E ++ IF G + +I++K+TN S+G FI F + A+ L T
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNT 78
Query: 135 FN--GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
N GT + + + ++ ++ + + + +F+G L D + Y
Sbjct: 79 TNESGTFLENMNKPLQVKYSD------NEIEKMERKLFIGMLGTSDEDQI--RILFGNYG 130
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
++ +V ++ G+ KGYGF+++ E ++ E++G T P P K A T
Sbjct: 131 IIEDLNIVREKD-GKPKGYGFIKYSTRDESENALREIDGK--HTLPGSNLPIIVKFADTE 187
Query: 253 QQYQKATYQNTQGSQ 267
+Q +K N Q Q
Sbjct: 188 RQKRKKLLGNQQPPQ 202
Score = 67 (28.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 261 QNTQGSQGENDPNNTT-IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK-----RC-G 313
Q Q Q + PN + +F+ L + D+ LK +F YG ++ K+ K +C G
Sbjct: 272 QQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFG 331
Query: 314 FVQFAN 319
FV + N
Sbjct: 332 FVSYDN 337
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 184 (69.8 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 48/167 (28%), Positives = 89/167 (53%)
Query: 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219
+ ++G +FVG+L+ +VT+ L + F + + A+++T+R TGRS+G+G+V F +
Sbjct: 270 KTEEGASANLFVGNLSWNVTEEWLHQEFEQ-FGELS-ARIMTERDTGRSRGFGYVEFTNA 327
Query: 220 SEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGEN-DPNNTTIF 278
++ ++ M R + + A + A Q K QN S G+ P + T+F
Sbjct: 328 ADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLF 387
Query: 279 VGGLDPSVTDDILKTVFGQYGELVHVKIP----AG--KRCGFVQFAN 319
VG L S +D + VFG G ++ +++P +G K G+VQ+++
Sbjct: 388 VGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSS 434
Score = 166 (63.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 52/196 (26%), Positives = 95/196 (48%)
Query: 75 SLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
+L++G+L W + E ++ F GE +S +++ + T S G+G++EF + A A + +
Sbjct: 278 NLFVGNLS-WNVTEEWLHQEFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 134 TFNGTQMPSTEQNFRLNWATY--------GAGERRQDDGPDF---------TIFVGDLAA 176
++ + N L++AT G ER Q+ F T+FVG+L
Sbjct: 336 AMKEHEIDGRKIN--LDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPF 393
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ + E F +V G ++ TD +GR KG+G+V++ E ++ E+ G
Sbjct: 394 SANEDSVHEVF-GPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDG 452
Query: 237 RPMRIGPAATKKAATG 252
RP+R+ +T +A G
Sbjct: 453 RPIRLD-FSTPRANNG 467
>UNIPROTKB|F1N7X9 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00717903
UniGene:Bt.62303 GeneTree:ENSGT00390000002894 OMA:FIPHVLQ
EMBL:DAAA02046949 Ensembl:ENSBTAT00000017884 Uniprot:F1N7X9
Length = 448
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|Q0P5L0 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:BC119904 IPI:IPI00717903 RefSeq:NP_001069673.1
UniGene:Bt.62303 ProteinModelPortal:Q0P5L0 STRING:Q0P5L0
GeneID:540172 KEGG:bta:540172 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 NextBio:20878465
Uniprot:Q0P5L0
Length = 448
Score = 183 (69.5 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 345 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 403
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 404 VRAMREMNGKYVGSRPIKL 422
>UNIPROTKB|K7EP90 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000589871 Uniprot:K7EP90
Length = 458
Score = 183 (69.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 355 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 413
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 414 VRAMREMNGKYVGSRPIKL 432
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 143 (55.4 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 38/151 (25%), Positives = 73/151 (48%)
Query: 114 SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGD 173
S GYGF+ ++ AE+ + T NG ++ + + ++++A + R D ++V
Sbjct: 119 SLGYGFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYARPSSASIR-----DANLYVSG 171
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L +T L++ F + Y + ++++ D+ TG S+G GF+RF E ++ +NG
Sbjct: 172 LPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 230
Query: 234 C--STRPMRIGPAATKKAATGQQYQKATYQN 262
+T P+ + A T Q YQ+
Sbjct: 231 PPGATEPITVKFANNPSQKTNQAILSQLYQS 261
Score = 104 (41.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223
G + IFV +LA D + +L + F + +V KV+ D T + KG+GFV + E
Sbjct: 314 GTGWCIFVYNLAPDADESILWQMF-GPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 372
Query: 224 RSMTEMNGVLCSTRPMRI 241
++ +NG R +++
Sbjct: 373 MAIASLNGYRLGDRVLQV 390
Score = 100 (40.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS IR +L++ L M + + +F G ++ +++ ++ T S G GFI F
Sbjct: 158 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 217
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE ++ NG + P + + +A
Sbjct: 218 EAEEAIKGLNGQKPPGATEPITVKFA 243
Score = 60 (26.2 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L P + IL +FG +G + +VK+ +C GFV N
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 367
Score = 56 (24.8 bits), Expect = 2.3e-12, Sum P(3) = 2.3e-12
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT 111
+ D +L + L M + + S+FG GE S K++R+K T
Sbjct: 44 TEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86
>MGI|MGI:1915285 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915285 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
GeneTree:ENSGT00390000002894 OrthoDB:EOG4J9N0T OMA:FIPHVLQ
EMBL:AK151000 EMBL:BC009148 EMBL:BC011286 EMBL:BC027372
EMBL:BC057928 IPI:IPI00126204 IPI:IPI00853826 RefSeq:NP_598454.2
UniGene:Mm.401747 ProteinModelPortal:Q91V81 SMR:Q91V81
STRING:Q91V81 PhosphoSite:Q91V81 PaxDb:Q91V81 PRIDE:Q91V81
Ensembl:ENSMUST00000042726 GeneID:68035 KEGG:mmu:68035
UCSC:uc009gfn.2 UCSC:uc009gfp.1 InParanoid:Q91V81 NextBio:326262
Bgee:Q91V81 CleanEx:MM_RBM42 Genevestigator:Q91V81 Uniprot:Q91V81
Length = 474
Score = 183 (69.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>RGD|1306184 [details] [associations]
symbol:Rbm42 "RNA binding motif protein 42" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 183 (69.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|Q6AXT7 [details] [associations]
symbol:Rbm42 "RNA-binding protein 42" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306184 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q15427 CTD:79171
eggNOG:NOG306795 HOGENOM:HOG000154080 HOVERGEN:HBG060478
OrthoDB:EOG4J9N0T EMBL:BC079321 IPI:IPI00365702
RefSeq:NP_001014181.2 UniGene:Rn.17083 ProteinModelPortal:Q6AXT7
STRING:Q6AXT7 PhosphoSite:Q6AXT7 GeneID:361545 KEGG:rno:361545
UCSC:RGD:1306184 InParanoid:Q6AXT7 NextBio:676676
Genevestigator:Q6AXT7 Uniprot:Q6AXT7
Length = 474
Score = 183 (69.5 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 371 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 429
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 430 VRAMREMNGKYVGSRPIKL 448
>UNIPROTKB|F1RM56 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002894 OMA:FIPHVLQ EMBL:FP243365
RefSeq:XP_003127114.1 UniGene:Ssc.7915 Ensembl:ENSSSCT00000003210
GeneID:100520432 KEGG:ssc:100520432 Uniprot:F1RM56
Length = 477
Score = 183 (69.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 374 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 432
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 433 VRAMREMNGKYVGSRPIKL 451
>UNIPROTKB|Q9BTD8 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC002115 HSSP:Q15427 CTD:79171 eggNOG:NOG306795
HOGENOM:HOG000154080 HOVERGEN:HBG060478 OrthoDB:EOG4J9N0T
EMBL:BC002868 EMBL:BC004204 EMBL:BC031682 IPI:IPI00021626
IPI:IPI00074329 IPI:IPI00550442 IPI:IPI00929470 RefSeq:NP_077297.2
UniGene:Hs.5086 ProteinModelPortal:Q9BTD8 SMR:Q9BTD8 IntAct:Q9BTD8
MINT:MINT-2876248 STRING:Q9BTD8 PhosphoSite:Q9BTD8 DMDM:74761247
PaxDb:Q9BTD8 PRIDE:Q9BTD8 DNASU:79171 Ensembl:ENST00000262633
Ensembl:ENST00000360475 GeneID:79171 KEGG:hsa:79171 UCSC:uc002oan.3
UCSC:uc002oap.3 UCSC:uc002oaq.3 GeneCards:GC19P036119
HGNC:HGNC:28117 HPA:HPA043671 MIM:613232 neXtProt:NX_Q9BTD8
PharmGKB:PA162400760 InParanoid:Q9BTD8 OMA:FIPHVLQ PhylomeDB:Q9BTD8
ChiTaRS:RBM42 GenomeRNAi:79171 NextBio:68133 Bgee:Q9BTD8
CleanEx:HS_RBM42 Genevestigator:Q9BTD8 Uniprot:Q9BTD8
Length = 480
Score = 183 (69.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 435
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 436 VRAMREMNGKYVGSRPIKL 454
>UNIPROTKB|F1PT81 [details] [associations]
symbol:RBM42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101661 EMBL:AAEX03001010 EMBL:AAEX03001009
Ensembl:ENSCAFT00000011116 Uniprot:F1PT81
Length = 483
Score = 183 (69.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 37/79 (46%), Positives = 51/79 (64%)
Query: 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222
D DF IF GDL +V D +L F S +K AKV+ D+ TG++KGYGFV F D S+
Sbjct: 381 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLK-AKVIRDKRTGKTKGYGFVSFKDPSDY 439
Query: 223 LRSMTEMNGVLCSTRPMRI 241
+R+M EMNG +RP+++
Sbjct: 440 VRAMREMNGKYVGSRPIKL 458
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 183 (69.5 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 51/162 (31%), Positives = 83/162 (51%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+ D P T+FVG+L+ +V D +L E F+ +V A+V+TDR +GRSKG+G+V F
Sbjct: 234 ESDKPS-TLFVGNLSWNVDDAMLAEEFKFC-GTVTSARVITDRESGRSKGFGYVDFATPE 291
Query: 221 EQLRSMTEMNGVLCSTRPMRI----GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTT 276
E ++ E G R +++ G A A G + +K Y +T P + T
Sbjct: 292 EAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKK--YGDTVS------PESDT 343
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIP----AGKRCGF 314
+FVG L +D + F + E+ +++P +G+R GF
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGF 385
Score = 166 (63.5 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 50/183 (27%), Positives = 93/183 (50%)
Query: 70 SDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
SD +L++G+L W ++++ +A F G S +VI ++++ S+G+G+++F + A
Sbjct: 235 SDKPSTLFVGNLS-WNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEA 293
Query: 129 ERVLQTFNGTQMPSTE--QNFRLNWATYG---AGERRQDDG----PDF-TIFVGDLAADV 178
E+ G + E +F AT AG R + G P+ T+FVG+L D
Sbjct: 294 EKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDA 353
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
+ + F V + VK ++ T++ +GR KG+G+V F + + ++NG + R
Sbjct: 354 DEDSVGAFFSEV-AEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRN 412
Query: 239 MRI 241
R+
Sbjct: 413 CRL 415
>ZFIN|ZDB-GENE-040809-2 [details] [associations]
symbol:rbm42 "RNA binding motif protein 42"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002088 "lens development in camera-type eye" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040809-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0002088
HSSP:Q60900 CTD:79171 eggNOG:NOG306795 HOGENOM:HOG000154080
HOVERGEN:HBG060478 EMBL:AY648798 EMBL:BC095046 IPI:IPI00499960
RefSeq:NP_001003850.1 UniGene:Dr.77446 ProteinModelPortal:Q6DRG1
Ensembl:ENSDART00000058380 GeneID:445360 KEGG:dre:445360
GeneTree:ENSGT00390000002894 InParanoid:Q504F4 OrthoDB:EOG4J9N0T
NextBio:20832076 Bgee:Q6DRG1 Uniprot:Q6DRG1
Length = 402
Score = 181 (68.8 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
DF IF GDL +V D +L F Y S AKVV D+ TG++KGYGFV F D ++ +R+
Sbjct: 302 DFRIFCGDLGNEVNDDILARAFSR-YPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 226 MTEMNGVLCSTRPMRIGPAATK 247
M EMNG +RP+++ +A K
Sbjct: 361 MREMNGRYVGSRPIKLRKSAWK 382
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 143 (55.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 35/114 (30%), Positives = 59/114 (51%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G+L + E I +F G S K+I +N + Y F+EF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALA 66
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF 117
Score = 106 (42.4 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+DDG T++VG+L+ DVT+ ++ + F + K K++T+ T+ + Y FV F +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTS--NDPYCFVEFYEHR 59
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAAT 246
+ ++ MNG + +++ A T
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATT 85
Score = 80 (33.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 257 KATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + T SQ ++ N+ +FVG L P +T + +K+ F +G++
Sbjct: 79 KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 183 (69.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 53/183 (28%), Positives = 86/183 (46%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P S SL++GDL P + E+ + F G +S ++ R+ T+ S Y ++ F
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
AE L T N + + R+ W+ R+ G IFV +L + + L +
Sbjct: 63 KDAEHALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFVKNLDKSINNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
T A + ++ VV D G SKGYGFV F R++ +MNG+L + R + +G
Sbjct: 118 TVSA-FGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFK 174
Query: 246 TKK 248
++K
Sbjct: 175 SRK 177
Score = 167 (63.8 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 52/196 (26%), Positives = 96/196 (48%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---- 140
M++ + +FG G +S KV+ + ++ S+G+GF+ F H A++ + NG ++
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
Query: 141 -------PSTEQNFRLNWATYGAGERRQDDGPDFTI---FVGDLAADVTDYVLQETFRAV 190
E+ L T+ + +QD + + +V +L + D L++ F +
Sbjct: 261 IYVGRAQKKVERQTELK-RTFE--QMKQDRITRYQVVNLYVKNLDDGIDDERLRKAF-SP 316
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
+ ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T+P+ + A K+
Sbjct: 317 FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374
Query: 251 TGQQYQKATYQNTQGS 266
Q Y Y S
Sbjct: 375 --QAYLTNEYMQRMAS 388
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 42/149 (28%), Positives = 73/149 (48%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IFV +L + + L +T A + ++ VV D G SKGYGFV F R++ +
Sbjct: 101 IFVKNLDKSINNKALYDTVSA-FGNILSCNVVCDEN-G-SKGYGFVHFETHEAAERAIKK 157
Query: 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
MNG+L + R + +G ++K + G++ + PN +++ + D
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAEL----------GARAKEFPN---VYIKNFGEDMDD 204
Query: 289 DILKTVFGQYGELVHVKI---PAGKRCGF 314
+ LK +FG++G + VK+ +GK GF
Sbjct: 205 ERLKDLFGKFGPALSVKVMTDESGKSKGF 233
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 178 (67.7 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 52/181 (28%), Positives = 91/181 (50%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++IG+L + +S + + G V+ + +++ T +GYGF+EF S AE +
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
NG ++ + R+N A+ ++ + G + +FVG+L VT+ VL +TF + V
Sbjct: 74 MNGIRLYG--KPIRVNKASADK-QKSVEIGAE--LFVGNLDPMVTEQVLYDTFSRFGNLV 128
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D + SKGYGFV F D ++ MNG + + + A KK G++
Sbjct: 129 NLPKVARD-DSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSV-QYAYKKDGKGER 186
Query: 255 Y 255
+
Sbjct: 187 H 187
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
L++G+L P + E + F G V+ + +N S+GYGF+ F +++ +
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANM 162
Query: 136 NGTQMPSTEQNFRLNWATYGAGERRQD 162
NG + + + + + + G GER D
Sbjct: 163 NGQYLMNKQVSVQYAYKKDGKGERHGD 189
Score = 111 (44.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 156 AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVR 215
+G R + + T+++G+L V+D ++ E + + DR T +GYGFV
Sbjct: 2 SGARHWEQDKEATVYIGNLDERVSDSLVWELMLQA-GRIVNVHLPKDRVTQSHQGYGFVE 60
Query: 216 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
F E + + MNG+ +P+R+ A+ K
Sbjct: 61 FNSEEDAEYASRIMNGIRLYGKPIRVNKASADK 93
Score = 83 (34.3 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHV-KIPA-----GKRCGFVQFAN 319
+FVG LDP VT+ +L F ++G LV++ K+ K GFV FA+
Sbjct: 103 LFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFAD 151
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 181 (68.8 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 67/255 (26%), Positives = 117/255 (45%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G +L++ +L + S + +F G +S KV+ ++ S+G+GF++F + +A
Sbjct: 110 GFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSA 167
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG-PDFT-IFVGDLAADVTDYVLQETFRA 189
+G+ M ++ F + ER G D T ++V +L VTD L F +
Sbjct: 168 RSALHGS-MVYGKKLFVAKFIN--KDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLF-S 223
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y +V V+ D GRS+G+GFV F + ++M + G+ ++ + +G A K
Sbjct: 224 QYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDE 282
Query: 250 ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA- 308
QK + N N ++V L S+ + L+ +FG YG++V K+
Sbjct: 283 RREMLKQKFS-DNFIAKPNMRWSN---LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH 338
Query: 309 ----GKRCGFVQFAN 319
K GFV F+N
Sbjct: 339 ENGRSKGFGFVCFSN 353
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 49/189 (25%), Positives = 85/189 (44%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E + F VS + RN T S Y +I F S +A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + + R+ W+ RR+ ++V +L + +T L+ F + S+
Sbjct: 82 LNHSDLKG--KAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMF-CPFGSI 138
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK--KAA-T 251
KVV + G+SKG+GFV+F E + + + ++G + + + + K +AA
Sbjct: 139 LSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA 196
Query: 252 GQQYQKATY 260
G Q Y
Sbjct: 197 GNQDSTNVY 205
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 51/218 (23%), Positives = 102/218 (46%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + ++++ +L + + + ++F G VS V+ S G+GF+ F +
Sbjct: 196 AGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT-VSSVVVMRDGMGRSRGFGFVNFCNPEN 254
Query: 128 AERVLQTFNGTQMPSTE----QNFRLNWATYGAGERRQDD---GPDF---TIFVGDLAAD 177
A++ +++ G Q+ S + + + + ++ D+ P+ ++V +L+
Sbjct: 255 AKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSES 314
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
+ + L+E F Y + AKV+ GRSKG+GFV F + E ++ +NG L +
Sbjct: 315 MNETRLREIF-GCYGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGK 372
Query: 238 PMRIGPAATKKAATG--QQYQKATYQNTQGSQGENDPN 273
P+ + A K+ QQY +A Q Q +Q + P+
Sbjct: 373 PIVVRVAERKEDRIKRLQQYFQA--QPRQYTQAPSAPS 408
>RGD|628862 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm"
evidence=IEA;ISO;ISS] [GO:0007399 "nervous system development"
evidence=IEP] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 148 (57.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 51/203 (25%), Positives = 93/203 (45%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F G+ V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
P+ + ++ A + +G R + + T IFV + T+ L+E F+ VY ++
Sbjct: 92 GPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
V+ ++ TG SKG G+VR+ S+ +++ + S R + P + Q Y
Sbjct: 150 SVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRALLAEPKNKVLESPEQDYYS 206
Query: 258 ATYQNTQGSQGENDPNNTTIFVG 280
+ Q T G + N FVG
Sbjct: 207 SVRQETLGHEPRG---NLFPFVG 226
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ ++ VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C +GP TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + + K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTG 158
Score = 76 (31.8 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+V++A+R
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADR 437
>UNIPROTKB|Q8CFD1 [details] [associations]
symbol:Rbm45 "RNA-binding protein 45" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:628862 GO:GO:0005634 GO:GO:0005737 GO:GO:0007399
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828 HOVERGEN:HBG051404
OrthoDB:EOG43R3MJ EMBL:AB036990 IPI:IPI00190978 RefSeq:NP_695218.1
UniGene:Rn.204106 ProteinModelPortal:Q8CFD1 STRING:Q8CFD1
PhosphoSite:Q8CFD1 PRIDE:Q8CFD1 GeneID:266631 KEGG:rno:266631
UCSC:RGD:628862 InParanoid:Q8CFD1 NextBio:624456
Genevestigator:Q8CFD1 GermOnline:ENSRNOG00000010595 Uniprot:Q8CFD1
Length = 476
Score = 148 (57.2 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 51/203 (25%), Positives = 93/203 (45%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F G+ V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
P+ + ++ A + +G R + + T IFV + T+ L+E F+ VY ++
Sbjct: 92 GPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
V+ ++ TG SKG G+VR+ S+ +++ + S R + P + Q Y
Sbjct: 150 SVIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRALLAEPKNKVLESPEQDYYS 206
Query: 258 ATYQNTQGSQGENDPNNTTIFVG 280
+ Q T G + N FVG
Sbjct: 207 SVRQETLGHEPRG---NLFPFVG 226
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ ++ VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLREHF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C +GP TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + + K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSVIKNKVTG 158
Score = 76 (31.8 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+V++A+R
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADR 437
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 173 (66.0 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 49/171 (28%), Positives = 86/171 (50%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGE--FVSGKVIRNKQTNFSEGYGFIEFVSHAAAER 130
+ SL++GDL + E + +F G S V R+ T S GY ++ F ++ AER
Sbjct: 183 LTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAER 242
Query: 131 VLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
L T N T + + R+ W+ +R+ + G IFV +L V + +L +TF +
Sbjct: 243 ALDTLNYTLVHG--KPCRIMWSYRDPTKRKTNVG---NIFVKNLEKGVDNAMLYDTFSS- 296
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ ++ KV ++ G SKGYG+V F +++ ++NG L +P+ +
Sbjct: 297 FGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 159 (61.0 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 51/262 (19%), Positives = 114/262 (43%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P + ++++ +L+ ++ + + F G +S KV K S+GYG++ F ++
Sbjct: 266 PTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETN 323
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
+AE+ ++ NGT + N ER + + +F + +T +LQ+
Sbjct: 324 DSAEKAIEKVNGTLILGKPINVE---RFVSKVERYKVENK---VFFRNADESITIEILQQ 377
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST--RPMRIGP 243
+ ++ + D G+SKG G V F ++ + + +TE ++ ST +
Sbjct: 378 ELSNRFGEIESCILKND-ANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSS 436
Query: 244 AATKKAATGQQY--QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
G+ + + + ++ + ++F+ +D S+ D++K F ++G +
Sbjct: 437 NGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTI 496
Query: 302 VHVKI-----PAGKRCGFVQFA 318
+ +KI K GF+ F+
Sbjct: 497 IGIKIVQDENARNKGFGFISFS 518
Score = 50 (22.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 257 KATYQNTQGSQGENDPNNTTIFVGGLDPSVTD 288
K Y N S N+ NNTT V PS T+
Sbjct: 697 KPRYNNNNNSSNNNNNNNTTTNVT-TTPSSTE 727
Score = 50 (22.7 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATY-QNTQGSQGENDPNNTTI 277
Q S + +NG +T P + T T ++K+ QN G+ N+ NNT I
Sbjct: 623 QPSSPSHLNGNTTTTSP-NTRYSKTLNGTT--PFKKSNLPQNANGTNNNNNNNNTNI 676
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 171 (65.3 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 36/123 (29%), Positives = 64/123 (52%)
Query: 197 AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQ 256
A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A +
Sbjct: 3 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 62
Query: 257 KATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFV 315
T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K FV
Sbjct: 63 NNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFV 122
Query: 316 QFA 318
+F+
Sbjct: 123 RFS 125
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 36/148 (24%), Positives = 67/148 (45%)
Query: 101 VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY------ 154
+ +V+++ T S+GYGF+ F + AE + G + + R NWAT
Sbjct: 1 MDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ--IRTNWATRKPPAPK 58
Query: 155 -----GAGERRQDD-----GP-DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR 203
+ R +D P + T++ G +A+ +TD ++++TF + + + +V +
Sbjct: 59 STQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTF-SPFGQIMEIRVFPE- 116
Query: 204 TTGRSKGYGFVRFGDESEQLRSMTEMNG 231
KGY FVRF ++ +NG
Sbjct: 117 -----KGYSFVRFSTHESAAHAIVSVNG 139
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 160 (61.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 47/190 (24%), Positives = 93/190 (48%)
Query: 136 NGTQMPSTEQNF-RLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ + + R + A E R D FT +FV ++ D+ D L+E F Y
Sbjct: 2 NGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELF-CEYGP 60
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ KV+ D +G+SKG+GFVR+ +++ +++G + + +G A K +
Sbjct: 61 TESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 119
Query: 254 QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL----VHVKIPAG 309
++ ++ + + ++ P I++ LD ++ D+ LK F +G + V +++ G
Sbjct: 120 LRRR--FERLRLKE-KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQG 176
Query: 310 KRCGFVQFAN 319
K G V F++
Sbjct: 177 KGFGVVCFSS 186
Score = 135 (52.6 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 40/168 (23%), Positives = 79/168 (47%)
Query: 85 MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST- 143
+++ + +F G S KVIR+ S+G+GF+ + +H AA++ + +G +
Sbjct: 46 IDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKV 104
Query: 144 ----------EQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
E+ L + + P I++ +L + D L+E F + + S
Sbjct: 105 LYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSS-FGS 163
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
+ AKV+ + G+ KG+G V F E +++ EMNG + ++P+ +
Sbjct: 164 ISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 178 (67.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 58/203 (28%), Positives = 93/203 (45%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L + L M + I S+F GE S K+IR+K T S GYGF+ +V AE+ +
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
NG ++ QN + + G + ++V L ++T L+ F + Y +
Sbjct: 171 LNGLRL----QNKTIK-VSIARPSSESIKGAN--LYVSGLPKNMTQSDLESLF-SPYGKI 222
Query: 195 KGAKVVTDRTTGR-----SKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAATK 247
++++ D TG SKG GF+RF E R++ E+NG ST P+ + A
Sbjct: 223 ITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNP 282
Query: 248 KAATGQQYQKATY---QNTQGSQ 267
+ A Y QNT+G +
Sbjct: 283 SSNKNSMQPLAAYIAPQNTRGGR 305
Score = 104 (41.7 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
IFV +LA D + VL + F + +V+ KV+ D + + KG+GFV + E + ++
Sbjct: 363 IFVYNLAPDTEENVLWQLF-GPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQS 421
Query: 229 MNGVLCSTRPMRIGPAATKKAAT 251
+NG R +++ K T
Sbjct: 422 LNGYTLGNRVLQVSFKTNKNKQT 444
Score = 87 (35.7 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN-----FSEGYGFIE 121
SS+ I+ +L++ L M +S + S+F G+ ++ +++ + T S+G GFI
Sbjct: 189 SSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVGFIR 248
Query: 122 FVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152
F A+R ++ NGT ++ + + +A
Sbjct: 249 FDQRFEADRAIKELNGTTPKNSTEPITVKFA 279
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 148 (57.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 51/177 (28%), Positives = 83/177 (46%)
Query: 90 IASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149
+ ++F G+ +S KV+ + + N S GYGF+ F S + ++ +G Q QN +L
Sbjct: 125 LENLFSKYGKVLSSKVMIDPKGN-SYGYGFVRFSSPQESAAAIEELDGYQY----QNKKL 179
Query: 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSK 209
P +F+ L DVTD L++ F + + KV+ D G+SK
Sbjct: 180 LCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEP-FGKIIECKVMLDHN-GQSK 237
Query: 210 GYGFVRFGDESEQLRSMTEMNGVLC---STRPMRIGPAATK--KAATGQQYQKATYQ 261
GFVRF E + +++ MNGV S P+ + A T+ K + Q+ + YQ
Sbjct: 238 FAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQKISRKQRKMQTIYQ 294
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/105 (30%), Positives = 57/105 (54%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D +FV L V D L + F + + ++ +V+TD+ TG +KGYGFV+F E L+
Sbjct: 768 DTNLFVFHLPPFVDDSYLFQLF-SQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKC 826
Query: 226 MTEMNGVLCSTRPMRIGPAATKKAA-TGQQYQKATYQNTQGSQGE 269
EMNG ++ +++ K++ +G+ + + +QN +Q E
Sbjct: 827 QKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQ--HQNQNKNQNE 869
Score = 93 (37.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 23/63 (36%), Positives = 33/63 (52%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+FV L + D L+ F + Y V +KV+ D G S GYGFVRF E ++ E
Sbjct: 111 VFVKHLPYEFNDEDLENLF-SKYGKVLSSKVMID-PKGNSYGYGFVRFSSPQESAAAIEE 168
Query: 229 MNG 231
++G
Sbjct: 169 LDG 171
Score = 80 (33.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 263 TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
T S G N+T +FV L P V D L +F Q+G+L V++ K G
Sbjct: 757 TSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTG 807
Score = 74 (31.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/85 (28%), Positives = 39/85 (45%)
Query: 244 AATKKAATGQQYQK----ATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
AA + G QYQ N + P+N +F+ L VTDD L+ +F +G
Sbjct: 163 AAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSNN-LFIKPLPYDVTDDQLRKLFEPFG 221
Query: 300 ELVHVKIPA-----GKRCGFVQFAN 319
+++ K+ K GFV+F++
Sbjct: 222 KIIECKVMLDHNGQSKFAGFVRFSS 246
Score = 41 (19.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 247 KKAATGQQYQKATYQNTQGSQGENDPNNTT 276
KK QQ Q T QN+ + P NT+
Sbjct: 530 KKKKKHQQVQSQTSQNSIQIASSSTPLNTS 559
Score = 39 (18.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNN 274
P+ T + + Y K N + N+ NN
Sbjct: 576 PSPTSDSISPLPYNKNNNNNNNNNNNNNNNNN 607
>UNIPROTKB|Q3MHF0 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD GeneTree:ENSGT00680000100059
OrthoDB:EOG43R3MJ EMBL:DAAA02004143 EMBL:BC105262 IPI:IPI00711970
RefSeq:NP_001124225.1 UniGene:Bt.48322 STRING:Q3MHF0
Ensembl:ENSBTAT00000008111 GeneID:535331 KEGG:bta:535331
InParanoid:Q3MHF0 NextBio:20876704 Uniprot:Q3MHF0
Length = 474
Score = 148 (57.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 47/190 (24%), Positives = 89/190 (46%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F GE V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTSESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
PS + ++ A + +G R + + T IFV + T+ L+E F+ V+ ++
Sbjct: 92 TPSDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VFGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
++ ++ TG SKG G+VR+ S+ +++ + S R + P ++ Q Y
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SYRAILAEPKNKASESSEQDYYS 206
Query: 258 ATYQNTQGSQ 267
Q T G +
Sbjct: 207 NMRQETLGHE 216
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 44/154 (28%), Positives = 75/154 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ ++ VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTSESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C T P+ TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-CLT------PSDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F +G++ + I K G
Sbjct: 126 M-IPKSYTEEDLREKFKVFGDIEYCSIIKNKVTG 158
Score = 72 (30.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+ ++A+R
Sbjct: 404 DVLEDIFCRFGNLIEVYLVSGKNVGYAKYADR 435
>UNIPROTKB|F1PYP3 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 EMBL:AAEX03017810
Ensembl:ENSCAFT00000021639 Uniprot:F1PYP3
Length = 480
Score = 148 (57.2 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 47/190 (24%), Positives = 89/190 (46%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F GE V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
P+ + ++ A + +G R + + T IFV + T+ L+E F+ VY ++
Sbjct: 92 SPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
++ ++ TG SKG G+VR+ S+ +++ + S R + P ++ Q Y
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRAILAEPKNKASESSEQDYYS 206
Query: 258 ATYQNTQGSQ 267
Q T G +
Sbjct: 207 NMRQETLGHE 216
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 44/154 (28%), Positives = 73/154 (47%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ + VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C + P TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LSPNDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + I K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158
Score = 72 (30.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+ ++A+R
Sbjct: 410 DVLEDIFCRFGNLIEVYLVSGKNVGYAKYADR 441
>MGI|MGI:2387367 [details] [associations]
symbol:Rbm45 "RNA binding motif protein 45" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030154 "cell differentiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2387367 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:129831 eggNOG:NOG145324 HOGENOM:HOG000231828
HOVERGEN:HBG051404 OMA:DIWVVKD EMBL:AB036992 EMBL:AY152391
EMBL:AK089975 EMBL:BC057890 IPI:IPI00221908 RefSeq:NP_700454.1
UniGene:Mm.33310 ProteinModelPortal:Q8BHN5 SMR:Q8BHN5 STRING:Q8BHN5
PhosphoSite:Q8BHN5 PaxDb:Q8BHN5 PRIDE:Q8BHN5
Ensembl:ENSMUST00000046389 GeneID:241490 KEGG:mmu:241490
GeneTree:ENSGT00680000100059 InParanoid:Q8BHN5 OrthoDB:EOG43R3MJ
NextBio:385019 Bgee:Q8BHN5 CleanEx:MM_RBM45 Genevestigator:Q8BHN5
GermOnline:ENSMUSG00000042369 Uniprot:Q8BHN5
Length = 476
Score = 144 (55.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 50/190 (26%), Positives = 87/190 (45%)
Query: 94 FGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-PSTEQNFRLNWA 152
F G+ V+R+K T S+G F++F + A R ++ +G + PS + ++ A
Sbjct: 45 FSPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQACRAMEEMHGQCLGPSDTKPIKVFIA 104
Query: 153 -TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKG 210
+ +G R + + T IFV + T+ L+E F+ VY ++ ++ ++ TG SKG
Sbjct: 105 QSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYCSIIKNKVTGESKG 162
Query: 211 YGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGEN 270
G+VR+ S+ +++ C R R A K +G Q Q + G+
Sbjct: 163 LGYVRYLKPSQAAQAIEN-----CD-RSFRALLAEPKNKVSGSPEQDDYSSGRQEALGQE 216
Query: 271 DPNNTTIFVG 280
N FVG
Sbjct: 217 PRANLFPFVG 226
Score = 131 (51.2 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 45/154 (29%), Positives = 76/154 (49%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ ++ VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKHTSELVLRERF-SPFGDIQDIWVVRDKHTKESKGVAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C +GP+ TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LGPSDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + I K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158
Score = 76 (31.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+V++A+R
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYVKYADR 437
>UNIPROTKB|F1RZE1 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:CU856244 Ensembl:ENSSSCT00000017417 Uniprot:F1RZE1
Length = 476
Score = 147 (56.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 47/190 (24%), Positives = 89/190 (46%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F GE V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
P+ + ++ A + +G R + + T IFV + T+ L+E F+ VY ++
Sbjct: 92 SPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
++ ++ TG SKG G+VR+ S+ +++ + S R + P ++ Q Y
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRAILAEPKNKVSESSEQDYYS 206
Query: 258 ATYQNTQGSQ 267
Q T G +
Sbjct: 207 NMRQETVGHE 216
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 44/154 (28%), Positives = 73/154 (47%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ + VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C + P TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LSPNDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + I K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158
Score = 72 (30.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+ ++A+R
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYAKYADR 437
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 172 (65.6 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 49/183 (26%), Positives = 86/183 (46%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G +L + L M + + S+F GE S K+IR+K S GYGF+ +++ AER
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERA 77
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+ T NG ++ S + +++ A + + D +++ L +T +++ F +
Sbjct: 78 INTLNGLRLQS--KTIKVSVARPSSESIK-----DANLYISGLPRTMTQKDVEDMFLP-F 129
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251
+ ++V+ D+ TG S+G F+RF SE ++ NG P P K AA
Sbjct: 130 GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGSSEPITVKFAAN 186
Query: 252 GQQ 254
Q
Sbjct: 187 PNQ 189
Score = 100 (40.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS+ I+ +L+I L M + + +F G ++ +V+ ++ T S G FI F +
Sbjct: 99 SSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRS 158
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE + +FNG + P + + + +A
Sbjct: 159 EAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 55 (24.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 214 VRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPN 273
V+F Q ++M ++ LC + R G +A + + + G N +
Sbjct: 181 VKFAANPNQNKNMALLSQ-LCHSPARRFGGPVHHQAQRFR-FSPMGVDHMSSISGVNVAS 238
Query: 274 NTT----IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
+ + IF+ L + IL +FG +G + +VK+ +C GFV N
Sbjct: 239 SASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 294
>UNIPROTKB|F1NEX8 [details] [associations]
symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
Length = 502
Score = 150 (57.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 41/144 (28%), Positives = 75/144 (52%)
Query: 87 ESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM-PSTEQ 145
E+ I F G+ + ++R+K+TN S G FI+F + A R ++ +G + P T+
Sbjct: 66 EALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFARSSQACRAMEEMHGRSLVPDTKP 125
Query: 146 NFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204
+ +G R + + T IFV + T+ L+E F+ +Y ++ ++ ++T
Sbjct: 126 IKVFIAQSRASGSHRDVEDEELTRIFVM-IPKTYTEEDLREKFK-MYGDIEYCSIIKNKT 183
Query: 205 TGRSKGYGFVRFGDESEQLRSMTE 228
TG SKG G+VR+ S+ R++ E
Sbjct: 184 TGESKGLGYVRYLKPSQAARAIEE 207
Score = 122 (48.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 39/154 (25%), Positives = 80/154 (51%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ +FV L D + +++E F A + ++ ++ D+ T S+G F++F S+
Sbjct: 49 DEPPNSRVFVV-LGKDAGEALIRERF-APFGDIQNIWLLRDKRTNESRGIAFIKFARSSQ 106
Query: 222 QLRSMTEMNG--VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G ++ T+P+++ A ++ A+G ++++ + D T IFV
Sbjct: 107 ACRAMEEMHGRSLVPDTKPIKVFIAQSR--ASG------SHRDVE------DEELTRIFV 152
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ + T++ L+ F YG++ + I K G
Sbjct: 153 M-IPKTYTEEDLREKFKMYGDIEYCSIIKNKTTG 185
Score = 67 (28.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 290 ILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
IL+ VF ++G L+ V + AGK + +FA+R
Sbjct: 433 ILEDVFCRFGNLIKVYLVAGKNVAYAKFADR 463
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 173 (66.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 47/184 (25%), Positives = 94/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + ES + + G VS + +++ T +G+GF+EF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + ++N A+ A E+ D G + IFVG+L +V + +L +TF A +
Sbjct: 74 LNMIKLYG--KPIKVNKAS--AHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D +G SKG+ F+ F ++ MNG R + + A K+ + G++
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVS-YAFKRDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGTA 190
Score = 86 (35.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D TI+VG L V++ +L E V + DR T +G+GFV F E + +
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQA-GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ +N + +P+++ A+
Sbjct: 71 IKILNMIKLYGKPIKVNKAS 90
Score = 71 (30.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK-----IPAG 309
Y K N + +N IFVG LDP V + +L F +G ++ V + +G
Sbjct: 80 YGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSG 139
Query: 310 KRCGF--VQFAN 319
GF + FA+
Sbjct: 140 TSKGFAFINFAS 151
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 173 (66.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 47/184 (25%), Positives = 94/184 (51%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + ES + + G VS + +++ T +G+GF+EF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + ++N A+ A E+ D G + IFVG+L +V + +L +TF A +
Sbjct: 74 LNMIKLYG--KPIKVNKAS--AHEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+ K++ D +G SKG+ F+ F ++ MNG R + + A K+ + G++
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVS-YAFKRDSKGER 186
Query: 255 YQKA 258
+ A
Sbjct: 187 HGTA 190
Score = 86 (35.3 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225
D TI+VG L V++ +L E V + DR T +G+GFV F E + +
Sbjct: 12 DATIYVGGLDEKVSESILWELMVQA-GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70
Query: 226 MTEMNGVLCSTRPMRIGPAA 245
+ +N + +P+++ A+
Sbjct: 71 IKILNMIKLYGKPIKVNKAS 90
Score = 71 (30.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK-----IPAG 309
Y K N + +N IFVG LDP V + +L F +G ++ V + +G
Sbjct: 80 YGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSG 139
Query: 310 KRCGF--VQFAN 319
GF + FA+
Sbjct: 140 TSKGFAFINFAS 151
>ZFIN|ZDB-GENE-070122-4 [details] [associations]
symbol:rbm45 "RNA binding motif protein 45"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
NextBio:20889217 Uniprot:B0S522
Length = 467
Score = 149 (57.5 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 42/142 (29%), Positives = 74/142 (52%)
Query: 87 ESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146
E I F GE V+++KQT S+G FI+F + A ++ +G + +
Sbjct: 29 EDTIRESFASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQACTAMEEMHGRCLAEGTKP 88
Query: 147 FRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204
++ A + +G R + + T IFV + T+ L+ETF+ VY ++ A ++ ++T
Sbjct: 89 IKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKTFTEDDLKETFK-VYGDIEYAIIIRNKT 146
Query: 205 TGRSKGYGFVRFGDESEQLRSM 226
TG SKG G+VRF S+ +++
Sbjct: 147 TGDSKGLGYVRFHKPSQAAKAV 168
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 39/154 (25%), Positives = 75/154 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ +F+ + +T+ ++E+F A + ++ VV D+ T SKG F++F S+
Sbjct: 12 DEPPNSRLFLVT-SKSITEDTIRESF-ASFGEIQDIWVVKDKQTKESKGVAFIKFAKSSQ 69
Query: 222 QLRSMTEMNGVLCS--TRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
+M EM+G + T+P+++ A ++ + + + + D T IFV
Sbjct: 70 ACTAMEEMHGRCLAEGTKPIKVFIAQSRSSGSHRDVE--------------DEELTRIFV 115
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ + T+D LK F YG++ + I K G
Sbjct: 116 M-IPKTFTEDDLKETFKVYGDIEYAIIIRNKTTG 148
Score = 67 (28.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
++L+ VF ++G L+ V + G+ G++++A+R
Sbjct: 397 EVLEDVFCRFGSLIEVYLVPGRNVGYIKYADR 428
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 154 (59.3 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 50/194 (25%), Positives = 88/194 (45%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-----------SEGYGFI 120
G +L + L M + + S+F GE S K+IR+K F S GYGF+
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFV 77
Query: 121 EFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTD 180
+++ AER + T NG ++ S + ++++A + + D +++ L +T
Sbjct: 78 NYLNAKDAERAINTLNGLRLQS--KTIKVSFARPSSESIK-----DANLYISGLPRTMTQ 130
Query: 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240
+++ F + + ++V+ D+ TG S+G F+RF SE ++ NG P
Sbjct: 131 KDVEDMFLP-FGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG---HKPPGS 186
Query: 241 IGPAATKKAATGQQ 254
P K AA Q
Sbjct: 187 SEPITVKFAANPNQ 200
Score = 100 (40.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 69 SSDGIR--SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
SS+ I+ +L+I L M + + +F G ++ +V+ ++ T S G FI F +
Sbjct: 110 SSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 169
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWA 152
AE + +FNG + P + + + +A
Sbjct: 170 EAEEAIASFNGHKPPGSSEPITVKFA 195
Score = 52 (23.4 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 277 IFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---KRC---GFVQFAN 319
IFV L + IL +FG +G + +VK+ +C GFV N
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 305
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 152 (58.6 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228
+F+G L+ D L++ F A + V AKV+ DR TGRS+G+GFV F DE +++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 229 MNGVLCSTRPMRIGPAATKKAA 250
M+G + R +R+ PA + +A
Sbjct: 96 MDGKELNGRHIRVNPANDRPSA 117
Score = 103 (41.3 bits), Expect = 0.00059, P = 0.00059
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
L+IG L +++ + F H G+ V KVI +++T S G+GF+ F AA +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 136 NGTQMPSTEQNFRLN 150
+G ++ ++ R+N
Sbjct: 97 DGKELNG--RHIRVN 109
>UNIPROTKB|Q8IUH3 [details] [associations]
symbol:RBM45 "RNA-binding protein 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0007399 "nervous system development"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB036991 GO:GO:0005634
GO:GO:0005737 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AF526533 EMBL:BC066549
IPI:IPI00216750 IPI:IPI00552178 IPI:IPI00789303 RefSeq:NP_694453.2
UniGene:Hs.377257 ProteinModelPortal:Q8IUH3 SMR:Q8IUH3
IntAct:Q8IUH3 STRING:Q8IUH3 PhosphoSite:Q8IUH3 DMDM:59797947
PaxDb:Q8IUH3 PRIDE:Q8IUH3 DNASU:129831 Ensembl:ENST00000286070
GeneID:129831 KEGG:hsa:129831 UCSC:uc002ulv.3 CTD:129831
GeneCards:GC02P178977 HGNC:HGNC:24468 HPA:HPA020448 MIM:608888
neXtProt:NX_Q8IUH3 PharmGKB:PA162400809 eggNOG:NOG145324
HOGENOM:HOG000231828 HOVERGEN:HBG051404 InParanoid:Q8IUH3
OMA:DIWVVKD ChiTaRS:RBM45 GenomeRNAi:129831 NextBio:82648
Bgee:Q8IUH3 CleanEx:HS_RBM45 Genevestigator:Q8IUH3
GermOnline:ENSG00000155636 Uniprot:Q8IUH3
Length = 476
Score = 142 (55.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 50/204 (24%), Positives = 95/204 (46%)
Query: 81 LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140
+ + ES + F G+ V+R+K T S+G F++F + A R ++ +G +
Sbjct: 32 ISKYTPESVLRERFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCL 91
Query: 141 -PSTEQNFRLNWA-TYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQETFRAVYSSVKGA 197
P+ + ++ A + +G R + + T IFV + T+ L+E F+ VY ++
Sbjct: 92 GPNDTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKSYTEEDLREKFK-VYGDIEYC 149
Query: 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
++ ++ TG SKG G+VR+ S+ +++ + S R + P ++ Q Y
Sbjct: 150 SIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDR---SFRAILAEPKNKASESSEQDY-- 204
Query: 258 ATYQNTQGSQGENDPN-NTTIFVG 280
Y N + ++P N FVG
Sbjct: 205 --YSNMRQEALGHEPRVNMFPFVG 226
Score = 123 (48.4 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 45/154 (29%), Positives = 74/154 (48%)
Query: 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221
D+ P+ IF+ ++ + VL+E F + + ++ VV D+ T SKG FV+F S+
Sbjct: 21 DEPPNSRIFLV-ISKYTPESVLRERF-SPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQ 78
Query: 222 QLRSMTEMNGVLCSTRPMRIGPAATK--KAATGQQYQKATYQNTQGSQGENDPNNTTIFV 279
R+M EM+G C +GP TK K Q ++++ + D T IFV
Sbjct: 79 ACRAMEEMHGQ-C------LGPNDTKPIKVFIAQSRSSGSHRDVE------DEELTRIFV 125
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG 313
+ S T++ L+ F YG++ + I K G
Sbjct: 126 M-IPKSYTEEDLREKFKVYGDIEYCSIIKNKVTG 158
Score = 72 (30.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 289 DILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
D+L+ +F ++G L+ V + +GK G+ ++A+R
Sbjct: 406 DVLEDIFCRFGNLIEVYLVSGKNVGYAKYADR 437
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 169 (64.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 51/183 (27%), Positives = 86/183 (46%)
Query: 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
D +S G ++IG L + FG GE ++R++ T G+GFI F +
Sbjct: 14 DGASPG--KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS 71
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQET 186
++V++ T + + +Q GAG + D IFVG + + VT+ L++
Sbjct: 72 VVDKVIED---THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
Query: 187 FRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246
F A Y +V +V+ D T RS+G+GFV F E +++ N + + + I A
Sbjct: 129 F-AKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEP 187
Query: 247 KKA 249
KK+
Sbjct: 188 KKS 190
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 166 (63.5 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 45/169 (26%), Positives = 83/169 (49%)
Query: 156 AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVR 215
A + Q D +FVG+L +V L + F + +V+ +V+ D+ TGRS+G+GFV
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVT 138
Query: 216 FGDESEQLRSMTEMNGVLCSTRPMRI--GPAATKKAATGQQYQKATYQNTQ----GSQGE 269
SE + + NG RP+R+ GP K+ + ++++ ++ G G
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGS 198
Query: 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI----PAGKRCGF 314
+ ++VG L V D L+++F + G++V ++ +G+ GF
Sbjct: 199 GAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Score = 119 (46.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 146 NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT 205
+F + + YG G G ++VG+L+ V D L+ F + V A+V+ DR +
Sbjct: 184 SFGSSGSGYGGGGG-SGAGSGNRVYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDS 241
Query: 206 GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
GRSKG+GFV + E ++ ++G R +R+ A +
Sbjct: 242 GRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 91 (37.1 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 64 VAP--DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIE 121
VAP + S L++G+L ++ + +A +F G +VI +K T S G+GF+
Sbjct: 79 VAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVT 138
Query: 122 FVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG 164
S + E Q FNG ++ + R+N G +++DG
Sbjct: 139 MSSVSEVEAAAQQFNGYELDG--RPLRVN---AGPPPPKREDG 176
WARNING: HSPs involving 607 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 320 261 0.00090 114 3 11 22 0.49 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 857
No. of states in DFA: 601 (64 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.12u 0.09s 23.21t Elapsed: 00:00:01
Total cpu time: 23.18u 0.10s 23.28t Elapsed: 00:00:01
Start: Fri May 10 12:03:23 2013 End: Fri May 10 12:03:24 2013
WARNINGS ISSUED: 2