BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020847
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/252 (73%), Positives = 214/252 (84%), Gaps = 3/252 (1%)
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAA 128
S+ IRSLWIGDLQPWM+E+Y+ ++FG TGE + KVIRNKQ +SEGYGFIEFV+HA A
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
Query: 129 ERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188
ER LQT+NG MPS+EQ FRLNWA GAGERRQ +GP+ T+FVGDLA DVTD++L ETF+
Sbjct: 135 ERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 189 AVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248
AVYSSVKGAKVV DRTTGRSKGYGFVRF DESEQ+R+MTEMNG CS+RPMR GPAA KK
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Query: 249 AATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308
T Q A+YQNTQG+ GE+DP NTTIFVG +D SVT+D LK+VFGQ+GELVHVKIPA
Sbjct: 255 PLT---MQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA 311
Query: 309 GKRCGFVQFANR 320
GKRCGFVQ+ANR
Sbjct: 312 GKRCGFVQYANR 323
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G + + E + S+FG GE V K+ K+ GF+++ + A AE+ L
Sbjct: 279 TIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRC------GFVQYANRACAEQALSV 332
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDD 163
NGTQ+ Q+ RL+W + ++ Q D
Sbjct: 333 LNGTQLGG--QSIRLSWGRSPSNKQTQPD 359
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/281 (67%), Positives = 219/281 (77%), Gaps = 14/281 (4%)
Query: 42 PPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV 101
PPP W PQ PPS Q ++D IR+LWIGDLQ WM+E+++ F HTGE V
Sbjct: 38 PPPQMWNPQAAAPPSVQP--------TTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMV 89
Query: 102 SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNFRLNWATYGAGERR 160
S KVIRNKQT EGYGFIEF SHAAAERVLQTFN +PS +Q FRLNWA+ +G++R
Sbjct: 90 SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR 149
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
DD PD+TIFVGDLAADVTDY+L ETFRA Y SVKGAKVV DR TGR+KGYGFVRF DES
Sbjct: 150 -DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNT-QGSQGENDPNNTTIFV 279
EQ+R+MTEMNGV CSTRPMRIGPAA+KK TG Q+ +YQ++ G +NDPNNTT+FV
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTG---QRDSYQSSAAGVTTDNDPNNTTVFV 265
Query: 280 GGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320
GGLD SVTDD LK VF QYGE+VHVKIPAGKRCGFVQF+ +
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++++GDL + + + F + V G KV+ ++ T ++GYGF+ F + R +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 134 TFNGTQMPSTEQNFRL--------------NWATYGAGERRQDDGPDFTIFVGDLAADVT 179
NG +P + + R+ ++ + AG +D + T+FVG L A VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
D L+ F + Y + K+ K GFV+F ++S ++ +NGV +
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 240 RI 241
R+
Sbjct: 327 RL 328
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 56 SQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE 115
S Q+ GV D + ++++G L + + ++ ++F GE V K+ K+
Sbjct: 244 SYQSSAAGVTTDNDPNNT-TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC---- 298
Query: 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151
GF++F + AE L+ NG Q+ T RL+W
Sbjct: 299 --GFVQFSEKSCAEEALRMLNGVQLGGT--TVRLSW 330
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 380 bits (977), Expect = e-105, Method: Compositional matrix adjust.
Identities = 207/328 (63%), Positives = 235/328 (71%), Gaps = 20/328 (6%)
Query: 4 QPPSQPSDQ---TSQYQQQHQQWMAYQQQSQQQQQQHQTPVPPPVGWTPQPVPPPSQQTQ 60
QPP P Q Q QQ QQ Q W Q PSQQ
Sbjct: 9 QPPMAPMSMDQHQYQQQAPPPTQQQQWMMPPQQPQQPQFQPQSQPAWAQQ----PSQQQ- 63
Query: 61 PYGV--------APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN 112
YG +P + + +RSLWIGDLQ WM+E+Y+++ F HTGE VS KVIRNKQT
Sbjct: 64 -YGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTG 122
Query: 113 FSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVG 172
SEGYGF+EF SHAAAE +LQT+NGT MP+ EQNFR+NWA+ GAGERR DD + TIFVG
Sbjct: 123 QSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERR-DDSAEHTIFVG 181
Query: 173 DLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232
DLAADVTDY+LQETF++VYSSV+GAKVVTDR TGRSKGYGFV+F DESEQLR+MTEMNGV
Sbjct: 182 DLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGV 241
Query: 233 LCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILK 292
LCSTRPMRIGPAA KK QKATYQN Q +QGE+DPNNTTIFVGGLDP+V ++ L+
Sbjct: 242 LCSTRPMRIGPAANKKPVGTP--QKATYQNPQATQGESDPNNTTIFVGGLDPTVAEEHLR 299
Query: 293 TVFGQYGELVHVKIPAGKRCGFVQFANR 320
VF YGELVHVKI AGKRCGFVQF R
Sbjct: 300 QVFSPYGELVHVKIVAGKRCGFVQFGTR 327
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L P + E ++ +F GE V K++ K+ GF++F + A+AE+ L +
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRC------GFVQFGTRASAEQALSS 336
Query: 135 FNGTQMPSTEQNFRLNW 151
NGTQ+ Q+ RL+W
Sbjct: 337 LNGTQLGG--QSIRLSW 351
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
++++GDL + + + F V G KV+ ++ T S+GYGF++F + R +
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235
Query: 133 QTFNGTQMPSTEQNFRLN------------WATYGAGERRQ--DDGPDFTIFVGDLAADV 178
NG + + + R+ ATY + Q D + TIFVG L V
Sbjct: 236 TEMNG--VLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTV 293
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
+ L++ F + Y + K+V K GFV+FG + ++++ +NG +
Sbjct: 294 AEEHLRQVF-SPYGELVHVKIVA------GKRCGFVQFGTRASAEQALSSLNGTQLGGQS 346
Query: 239 MRI 241
+R+
Sbjct: 347 IRL 349
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 379 bits (974), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/264 (70%), Positives = 216/264 (81%), Gaps = 9/264 (3%)
Query: 62 YGVA---PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYG 118
YG+ P ++SD ++SLWIGDLQ WM+E+YI S+F +GE S KVIRNK T SEGYG
Sbjct: 46 YGIGSQNPGSASD-VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYG 104
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAAD 177
FIEFVSH+ AERVLQT+NG MPSTEQ FRLNWA GAGE+R Q +GPD TIFVGDLA +
Sbjct: 105 FIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPE 164
Query: 178 VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237
VTDY+L +TF+ VY SVKGAKVV DRTTGRSKGYGFVRF DE+EQ+R+MTEMNG CSTR
Sbjct: 165 VTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTR 224
Query: 238 PMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFG 296
PMRIGPAA K A Q A YQNTQG+ G+NDPNNTTIFVGGLD +VTDD LK++FG
Sbjct: 225 PMRIGPAANKNALP---MQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFG 281
Query: 297 QYGELVHVKIPAGKRCGFVQFANR 320
Q+GEL+HVKIP GKRCGFVQ+AN+
Sbjct: 282 QFGELLHVKIPPGKRCGFVQYANK 305
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + + + SIFG GE + K+ K+ GF+++ + A+AE L
Sbjct: 261 TIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC------GFVQYANKASAEHALSV 314
Query: 135 FNGTQMPSTEQNFRLNWA 152
NGTQ+ Q+ RL+W
Sbjct: 315 LNGTQLGG--QSIRLSWG 330
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 323 bits (829), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 157/263 (59%), Positives = 196/263 (74%), Gaps = 10/263 (3%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
+SS+ +++WIGDLQ WM+ESY+ S F GE +S K+IRNKQT SE YGF+EF +HAA
Sbjct: 78 SSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAA 137
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AE+VLQ++NGT MP+TEQ FRLNWA + GE+R + G DF+IFVGDLA+DVTD +L++TF
Sbjct: 138 AEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTF 197
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
+ Y S+KGAKVV D TG SKGYGFVRFGDESE+ R+MTEMNGV CS+R MRIG A K
Sbjct: 198 ASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPK 257
Query: 248 KAATGQQYQK----------ATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
K + +QY + T GSQ + D +NTTIFVGGLD VTD+ L+ F Q
Sbjct: 258 KPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQ 317
Query: 298 YGELVHVKIPAGKRCGFVQFANR 320
+GE+V VKIPAGK CGFVQF++R
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDR 340
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 32/192 (16%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL + ++ + F + G KV+ + T S+GYGF+ F + R +
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 134 TFNGT--------------QMPSTEQNFRL-------NWATYGA---GERRQDDGPDFTI 169
NG + PS + + +A+ GA G + D + TI
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229
FVG L ++VTD L+++F + V K+ KG GFV+F D S ++ ++
Sbjct: 298 FVGGLDSEVTDEELRQSFNQ-FGEVVSVKIPA------GKGCGFVQFSDRSSAQEAIQKL 350
Query: 230 NGVLCSTRPMRI 241
+G + + +R+
Sbjct: 351 SGAIIGKQAVRL 362
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/261 (60%), Positives = 188/261 (72%), Gaps = 14/261 (5%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+R+LWIGDLQ W++E+Y+ S F TGE VS KVIRNK T EGYGFIEF+SHAAAER L
Sbjct: 23 VRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTL 82
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
QT+NGTQMP TE FRLNWA++G+G++ D GPD +IFVGDLA DVTDY+LQETFR YS
Sbjct: 83 QTYNGTQMPGTELTFRLNWASFGSGQKV-DAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK-AAT 251
SV+GAKVVTD +TGRSKGYGFV+F +ESE+ R+M EMNG+ CSTRPMRI A KK
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGV 201
Query: 252 GQQY-QKATYQNTQGSQ-----------GENDPNNTTIFVGGLDPSVTDDILKTVFGQYG 299
QQY KA Y T S E+D TTI V LD +VT++ LK F Q G
Sbjct: 202 QQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLG 261
Query: 300 ELVHVKIPAGKRCGFVQFANR 320
E+++VKIPA K G+VQF R
Sbjct: 262 EVIYVKIPATKGYGYVQFKTR 282
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 34 QQQHQTPVPPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASI 93
QQQ+ T PV P V P Q VAP S ++ + +L + E +
Sbjct: 202 QQQYVTKAVYPVT-VPSAVAAPVQAY----VAPPESDVTCTTISVANLDQNVTEEELKKA 256
Query: 94 FGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152
F GE + K+ K GYG+++F + +AE +Q G + +Q R++W+
Sbjct: 257 FSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQRMQGQVI--GQQAVRISWS 307
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 302 bits (774), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/257 (58%), Positives = 185/257 (71%), Gaps = 7/257 (2%)
Query: 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAER 130
D +++LW+GDL WM+E+Y+ + F HT E S KVIRNKQT SEGYGF+EF+S +AAE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 131 VLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRA 189
LQ+F+G MP+ EQ FRLNWA++ GE+R ++GPD +IFVGDLA DV+D VL ETF
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
Y SVKGAKVV D TGRSKGYGFVRFGDE+E+ R+MTEMNG CS+R MR+G A K+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 250 AT-GQQ-----YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303
A GQQ A GS + + NN+TIFVGGLD VT++ L F +GE+V
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVS 355
Query: 304 VKIPAGKRCGFVQFANR 320
VKIP GK CGFVQFANR
Sbjct: 356 VKIPVGKGCGFVQFANR 372
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 28/188 (14%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ++ + F V G KV+ + T S+GYGF+ F R +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 134 TFNGTQMPSTE--------------------QNFRLNWATYGAGERRQDDGPDFTIFVGD 173
NG S + Q L G G + + TIFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 174 LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233
L ADVT+ L + F + + V K+ KG GFV+F + ++ +NG +
Sbjct: 334 LDADVTEEDLMQPF-SDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGTV 386
Query: 234 CSTRPMRI 241
+R+
Sbjct: 387 IGKNTVRL 394
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + E + F GE VS K+ K G GF++F + +AE +
Sbjct: 328 TIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK------GCGFVQFANRQSAEEAIGN 381
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDG 164
NGT + + RL+W + R D G
Sbjct: 382 LNGTVI--GKNTVRLSWGRSPNKQWRSDSG 409
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 301 bits (771), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 159/315 (50%), Positives = 204/315 (64%), Gaps = 26/315 (8%)
Query: 31 QQQQQQHQTPVPPP--------------VGWTPQPVPPPSQQTQPYGVAP--------DA 68
+++ Q +P PPP + + P P PP Q + + +A
Sbjct: 36 EEENQPKTSPTPPPHWMRYPPTVIIPHQMMYAPPPFPPYHQYPNHHHLHHQSRGNKHQNA 95
Query: 69 SSDGIRSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126
+ +++W+GDL WM+E+Y+ S F G E VS KVIRNK SEGYGF+EF SH
Sbjct: 96 FNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHD 155
Query: 127 AAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQE 185
A++VL+ FNGT MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDL+ DV+D +L E
Sbjct: 156 VADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHE 215
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA
Sbjct: 216 TFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT 275
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+K G Q Q N ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VK
Sbjct: 276 PRK-TNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVK 334
Query: 306 IPAGKRCGFVQFANR 320
IP GK CGFVQF NR
Sbjct: 335 IPVGKGCGFVQFVNR 349
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 25/183 (13%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ++ + F V + KV+ + T S+GYGF+ F + +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 134 TFNGTQMPSTEQNFRLNWAT---------------YGAGERRQDDGPDFTIFVGDLAADV 178
NG + S + R+ AT G R + D + TIFVG L + V
Sbjct: 258 EMNGVKCSS--RAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
TD L++ F + + K+ KG GFV+F + ++ ++NG + +
Sbjct: 316 TDEDLKQPFNE-FGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 239 MRI 241
+R+
Sbjct: 369 VRL 371
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++G L + + + F GE VS K+ K G GF++FV+ AE L+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 358
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQD 162
NGT + +Q RL+W A ++ +D
Sbjct: 359 LNGTVI--GKQTVRLSWGRNPANKQPRD 384
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 298 bits (764), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/265 (54%), Positives = 185/265 (69%), Gaps = 12/265 (4%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
S D +++LW+GDL WM+E+Y+ S F HTGE S KVIRNK T+ SEGYGF+EF+S AA
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQ-DDGPDFTIFVGDLAADVTDYVLQET 186
AE VLQ ++G+ MP+++Q FR+NWA++ GE+R ++GPD ++FVGDL+ DVTD +L ET
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 187 FRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246
F Y SVK AKVV D TGRSKGYGFVRFGDE+E+ R++TEMNG CS R MR+G A
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATP 281
Query: 247 KKAATGQQYQKATYQNTQGSQGEN-----------DPNNTTIFVGGLDPSVTDDILKTVF 295
K+A QQ + G G N + N TIFVGG+DP V D+ L+ F
Sbjct: 282 KRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPF 341
Query: 296 GQYGELVHVKIPAGKRCGFVQFANR 320
Q+GE+V VKIP GK CGFVQFA+R
Sbjct: 342 SQFGEVVSVKIPVGKGCGFVQFADR 366
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + + + F V S KV+ + T S+GYGF+ F R L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 134 TFNGTQMPSTEQNFRLNWAT---------------------------YGAGERRQDDGPD 166
NG + + R+ AT G G + + +
Sbjct: 263 EMNGAYC--SNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226
TIFVG + DV D L++ F + + V K+ KG GFV+F D ++
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAI 373
Query: 227 TEMNGVLCSTRPMRI----GPAATKKAATGQQYQ 256
+NG + +R+ P + +GQQ+
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 56 SQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE 115
S + YG D S ++++G + P + + + F GE VS K+ K
Sbjct: 304 SNGSMGYGSQSDGESTNA-TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------ 356
Query: 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDG 164
G GF++F +AE +++ NGT + + RL+W + R D G
Sbjct: 357 GCGFVQFADRKSAEDAIESLNGTVI--GKNTVRLSWGRSPNKQWRGDSG 403
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 298 bits (762), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/250 (59%), Positives = 182/250 (72%), Gaps = 4/250 (1%)
Query: 74 RSLWIGDLQPWMEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+++W+GDLQ WM+E+Y+ S F E VS KVIRNK SEGYGF+EF SH A++V
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERR-QDDGPDFTIFVGDLAADVTDYVLQETFRAV 190
LQ FNG MP+T+Q FRLNWA++ GE+R +++GPD +IFVGDLA DV+D +L ETF
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250
Y SVK AKVV D TGRSKGYGFVRFGDE+E+ ++MTEMNGV CS+R MRIGPA +K
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK-T 281
Query: 251 TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGK 310
G Q Q + ++ E D NTTIFVGGLD SVTD+ LK F ++GE+V VKIP GK
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK 341
Query: 311 RCGFVQFANR 320
CGFVQF NR
Sbjct: 342 GCGFVQFVNR 351
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P + ++ + F V + KV+ + T S+GYGF+ F + +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 134 TFNGTQMPSTEQNFRLNWAT---------------YGAGERRQDDGPDFTIFVGDLAADV 178
NG + S + R+ AT GA R + D + TIFVG L + V
Sbjct: 260 EMNGVKCSS--RAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
TD L++ F + + + K+ KG GFV+F + ++ ++NG + +
Sbjct: 318 TDEDLKQPF-SEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 239 MRI 241
+R+
Sbjct: 371 VRL 373
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 61 PYGVAPDASSDGIRS-LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGF 119
P G + D I + +++G L + + + F GE VS K+ K G GF
Sbjct: 292 PSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGF 345
Query: 120 IEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD 162
++FV+ AE L+ NGT + +Q RL+W A ++ +D
Sbjct: 346 VQFVNRPNAEEALEKLNGTVI--GKQTVRLSWGRNPANKQPRD 386
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 172/315 (54%), Gaps = 14/315 (4%)
Query: 16 YQQQHQQWMAYQQQSQQQQQQHQTPVPPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRS 75
+ +Q Q + +S + Q Q P+ P + S+ T YG + D + +
Sbjct: 38 FNEQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGN---SENTSNYGSSRDENVYQKTT 94
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
LW+G+L+PW+ E++I ++ G+ V K+IRN+ T + GY F+EF S A + +
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SM 153
Query: 136 NGTQMPSTEQNFRLNWATYGA-GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N +P T F+LNWA+ G E+ +++IFVGDL+ +V ++ + F + Y+S
Sbjct: 154 NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSC 213
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
K AK++TD T S+GYGFVRF DE++Q ++ EM G +C RP+R+G A K A
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFS 273
Query: 255 YQKAT---------YQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
Y Q D N+T+FVGGL V+++ LK +F +GE+V+VK
Sbjct: 274 PVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVK 333
Query: 306 IPAGKRCGFVQFANR 320
IP GK CGFVQF NR
Sbjct: 334 IPPGKGCGFVQFVNR 348
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Query: 44 PVGWTPQPVPPPS--QQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV 101
PV P +PP QP P + ++++G L ++ E + +F + GE V
Sbjct: 274 PVNVVPVSMPPVGFYSAAQP---VPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIV 330
Query: 102 SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151
K+ K G GF++FV+ +AE + G P RL+W
Sbjct: 331 YVKIPPGK------GCGFVQFVNRQSAEIAINQLQG--YPLGNSRIRLSW 372
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 151/258 (58%), Gaps = 13/258 (5%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSE---GYGFIEFVSHAAAERV 131
+LW+GDL+PWM+ ++I ++ E V+ KV+R+K ++ SE Y F++F S AAAER
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASS-SETLISYCFVQFSSSAAAERA 144
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQ--DDGPDFTIFVGDLAADVTDYVLQETFRA 189
L +N T +P F+LNWAT G + P+F+IFVGDL D L TFR+
Sbjct: 145 LMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRS 204
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
+Y S AK++ D TG S+ YGFVRF E EQ ++ M G LC RP+RI A+ K
Sbjct: 205 IYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
Query: 250 A-----TGQQYQKATYQNTQGSQ--GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A + + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++
Sbjct: 265 ASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 303 HVKIPAGKRCGFVQFANR 320
++KIP GK CGFVQ++ +
Sbjct: 325 NIKIPFGKGCGFVQYSEK 342
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 29/190 (15%)
Query: 75 SLWIGDLQPWMEESYIASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
S+++GDL P E+S + F S K+I + T S YGF+ F S + L
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 134 TFNG---------------TQMPSTEQNFRLNWATYGAGERR--QD----DGPDFTIFVG 172
G S + L R+ QD D + T+FVG
Sbjct: 243 HMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVG 302
Query: 173 DLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232
LA+++++ LQ F+ + + K+ KG GFV++ ++S +++ M G
Sbjct: 303 GLASNLSEKDLQVCFQP-FGRILNIKI------PFGKGCGFVQYSEKSAAEKAINTMQGA 355
Query: 233 LCSTRPMRIG 242
L T +R+
Sbjct: 356 LVGTSHIRLA 365
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKAS 178
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANR 320
D +L F + G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANR 320
D +L F + G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + +P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANR 320
D +L F + G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 115/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ATYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D TG SKGYGFV+F DE EQ R++TE G + +P+R+ A K +
Sbjct: 121 PSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y ATY G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNY--ATY----GKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANR 320
D +L F + G++V K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDE 147
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 155 bits (391), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 116/179 (64%), Gaps = 8/179 (4%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
SLW+GDL+P+M+E++I+ F GE V S K+IRN+ T GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 134 TFNGTQMP--STEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
NG +P + + F+LN+ TYG ++ D+ P++++FVGDL DV D +L E F VY
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATKKA 249
S +G KVV D+ TG SKGYGFV+F DE EQ R++TE G + ++P+R+ A K +
Sbjct: 121 PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 178
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++GDL + + + F + +V K++ +R TG GY FV F D + + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT Y T G Q +N P ++FVG L P V
Sbjct: 64 KING-----KPL---PGATPAKRFKLNYV------TYGKQPDNSPE-YSLFVGDLTPDVD 108
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQFANR 320
D +L F + G++V + K GFV+F +
Sbjct: 109 DGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 147
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 10/185 (5%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+ SLW+GDL P+M+E++I F GE G K+I ++ T S GY F+E A+ +R
Sbjct: 5 MTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC 64
Query: 132 LQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189
+Q NG +P + + F+LN+ATYG +R + GP+F++FVGDL ++V DY L + F
Sbjct: 65 VQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLK 121
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATK- 247
+ S KGAKVVTD G S+GYGFV+F DE+EQ +++ E N +P+RI A K
Sbjct: 122 KFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKG 180
Query: 248 -KAAT 251
KA+T
Sbjct: 181 NKAST 185
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 144 bits (363), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 150/304 (49%), Gaps = 60/304 (19%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNF----------SEGYGFIEFVS 124
L++GDL P +++ + I+ GE ++ +++ N N ++GY F++F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 125 HAAAERVLQTFNGTQMPST-EQNFRLNWATYGAGERRQ-----DDGPDFTIFVGDLAADV 178
A L NG +P+ + +LNWAT G + +IFVGDLA +V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T+ L E F Y+S AK+V D+ TG SKGYGFV+F + EQ +++EM GV + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 239 MRIGPAATKK--AATGQQYQKATYQ-NTQG-------------SQGEN------------ 270
+++GP + ++ + Y +++ N + S G N
Sbjct: 235 IKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQF 294
Query: 271 --------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQ 316
DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ
Sbjct: 295 IYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQ 354
Query: 317 FANR 320
+ +R
Sbjct: 355 YVDR 358
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 9/179 (5%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
+ SLW+G+L+P+M+E +I F GE V ++IR+K T + GYGF+E A ER
Sbjct: 1 MNSLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERC 60
Query: 132 LQTFNGTQMPSTE--QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189
L+ NG +P + F+L+ + YG +Q + F++FV DL DV D +L E F
Sbjct: 61 LRKVNGKPLPGATPPKRFKLSRSNYG----KQGESSTFSLFVSDLTPDVDDGMLYEFFHY 116
Query: 190 VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMRIGPAATK 247
+SS K+V D G SK GFV F E EQ R++ ++ G + +R+ A+++
Sbjct: 117 HFSSCCSGKIVLD-ANGHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 22/156 (14%)
Query: 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227
++++G+L + + + F + +V +++ D+ TG++ GYGFV D++ R +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 228 EMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287
++NG +P+ P AT + ++ Y G QGE+ + ++FV L P V
Sbjct: 63 KVNG-----KPL---PGATPPKRF--KLSRSNY----GKQGES--STFSLFVSDLTPDVD 106
Query: 288 DDILKTVFGQY------GELVHVKIPAGKRCGFVQF 317
D +L F + G++V K CGFV F
Sbjct: 107 DGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSF 142
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 126/246 (51%), Gaps = 7/246 (2%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
R+L++G+L + E I +F G S K+I +N + Y F+EF H A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAALA 66
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193
NG ++ E ++NWAT + +++ D F +FVGDL+ ++T ++ F A +
Sbjct: 67 AMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAF-APFGK 122
Query: 194 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ 253
+ A+VV D TG+SKGYGFV F ++ + ++ M G R +R A K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 254 QYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRC 312
+ T Q + ++ P N T++ GG+ +TD +++ F +G+++ +++ K
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGY 242
Query: 313 GFVQFA 318
FV+F+
Sbjct: 243 SFVRFS 248
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 26/166 (15%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
+DDG T++VG+L+ DVT+ ++ + F + K K++T+ T+ + Y FV F +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEHTS--NDPYCFVEFYEHR 59
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
+ ++ MNG + G++ K + T SQ ++ N+ +FVG
Sbjct: 60 DAAAALAAMNG----------------RKILGKEV-KVNWATTPSSQKKDTSNHFHVFVG 102
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKIP------AGKRCGFVQFANR 320
L P +T + +K+ F +G++ ++ K GFV F N+
Sbjct: 103 DLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 79/173 (45%), Gaps = 26/173 (15%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 136 NGTQMPSTEQNFRLNWATYG--AGERRQDDG---------------PDFTIFVGDLAADV 178
G + + R NWAT A + Q++ + T++ G +A+ +
Sbjct: 159 GGQWLGGRQ--IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 217 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 262
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 131/258 (50%), Gaps = 16/258 (6%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ PNN T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQFANR 320
+++ K FV+F++
Sbjct: 242 EIRVFPDKGYSFVRFSSH 259
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G +V+++ T S+GYGF+ F + AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 136 NGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPDFTIFVGDLAADV 178
G + + R NWAT Y + ++ Q + T++ G + + +
Sbjct: 168 GGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
T+ ++++TF + + + +V D KGY FVRF ++ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 25/250 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + E+++ IF G S +V R+ T S GY ++ F H AA+ ++
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ ++
Sbjct: 96 LNFT--PIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDIDNKALYDTF-SVFGNI 149
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
+KV TD TG+SKG+G+V F ++ ++ +NG+L + + + +GP +KK
Sbjct: 150 LSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKE----- 203
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE---LVHVKIPAG-- 309
+++ ++ E N T +++ ++ TD + + ++G+ +V + P G
Sbjct: 204 -RESKFE-------EMKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGEN 255
Query: 310 KRCGFVQFAN 319
K GFV F N
Sbjct: 256 KGFGFVNFVN 265
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 20/263 (7%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G +S KV + +T S+G+G++ F
Sbjct: 115 PSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEED 173
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+A + NG + E + + + ++ +FT +++ ++ + TD +
Sbjct: 174 ESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFE 233
Query: 185 ETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
E V K VV +RT G +KG+GFV F + + ++ + E+N +P+ +
Sbjct: 234 EL---VAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNR 290
Query: 244 AATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300
A K + +QY+ + QG N +F+ LD S+ D L+ F YG
Sbjct: 291 AQKKYERQQELKKQYEATRMEKMAKYQGIN------LFIKNLDDSIDDKKLEEEFAPYGT 344
Query: 301 LVHVKIPA-----GKRCGFVQFA 318
+ K+ K GFV F+
Sbjct: 345 ITSAKVMTTENGKSKGFGFVCFS 367
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
Query: 114 SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDF------ 167
++G+GF+ FV+H A + ++ N T+ Q +N A ER+Q+ +
Sbjct: 255 NKGFGFVNFVNHEDAVKCVEELNNTEFKG--QPLYVNRAQKKY-ERQQELKKQYEATRME 311
Query: 168 --------TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219
+F+ +L + D L+E F A Y ++ AKV+T G+SKG+GFV F
Sbjct: 312 KMAKYQGINLFIKNLDDSIDDKKLEEEF-APYGTITSAKVMTTEN-GKSKGFGFVCFSTP 369
Query: 220 SEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQN 262
E +++TE N + + +P+ + A K Q Q+ +N
Sbjct: 370 EEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARN 412
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 20/261 (7%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIR----NKQTNFSEG-----------YG 118
R+L++G+L + E I +F G S K+I +++ N S G Y
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADV 178
F+EF H A L NG ++ E ++NWAT + +++ D F +FVGDL+ ++
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-DTSNHFHVFVGDLSPEI 125
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
T ++ F A + + A+VV D TG+SKGYGFV F ++ + ++ M G R
Sbjct: 126 TTEDIKSAF-APFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
Query: 239 MRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297
+R A K A + T Q + ++ P N T++ GG+ +TD +++ F
Sbjct: 185 IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSP 244
Query: 298 YGELVHVKIPAGKRCGFVQFA 318
+G+++ +++ K FV+F+
Sbjct: 245 FGQIMEIRVFPEKGYSFVRFS 265
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I S F G+ +V+++ T S+GYGF+ F + AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 136 NGTQMPSTEQNFRLNWATY-----------GAGERRQDDG------PDFTIFVGDLAADV 178
G + + R NWAT + R +D + T++ G +A+ +
Sbjct: 176 GGQWLGGRQ--IRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
TD ++++TF + + + +V + KGY FVRF ++ +NG
Sbjct: 234 TDQLMRQTF-SPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNG 279
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTD----RTTGRSKG------ 210
+DDG T++VG+L+ DVT+ ++ + F + K K++T+ R S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI-GPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 211 -----YGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQG 265
Y FV F + + ++ MNG + G++ K + T
Sbjct: 62 TSNDPYCFVEFYEHRDAAAALAAMNG----------------RKILGKEV-KVNWATTPS 104
Query: 266 SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP------AGKRCGFVQFAN 319
SQ ++ N+ +FVG L P +T + +K+ F +G++ ++ K GFV F N
Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 164
Query: 320 R 320
+
Sbjct: 165 K 165
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL+P + E+++ IF G S +V R+ T S GY ++ F H A + ++
Sbjct: 39 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 98
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T P + R+ W+ R++ G IF+ +L D+ + L +TF +V+ +
Sbjct: 99 LNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKALYDTF-SVFGDI 152
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQ- 253
+K+ TD G+SKG+GFV F +E ++ +NG+L + + + + P ++K Q
Sbjct: 153 LSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 254 QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---GK 310
+ KA Y T ++V ++ TD+ + +F ++G +V + GK
Sbjct: 212 EETKAHY--------------TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGK 257
Query: 311 RCGF 314
GF
Sbjct: 258 LKGF 261
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 16/256 (6%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F G+ +S K+ ++ S+G+GF+ F
Sbjct: 118 PSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEE 176
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA+ + NG + E + + + ++ +T ++V ++ ++ TD Q
Sbjct: 177 GAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQ 236
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F A + + A + D G+ KG+GFV + + ++++ +N + + +G A
Sbjct: 237 ELF-AKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRA 294
Query: 245 ATKKA---ATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY+ + QG N +FV LD SV D+ L+ F YG +
Sbjct: 295 QKKNERMHVLKKQYEAYRLEKMAKYQGVN------LFVKNLDDSVDDEKLEEEFAPYGTI 348
Query: 302 VHVKI---PAGKRCGF 314
K+ GK GF
Sbjct: 349 TSAKVMRTENGKSKGF 364
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+L++ ++ + +F G VS + ++ +G+GF+ + H A + ++
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEA 278
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
N +++ + ++N R++ R + + +FV +L V D L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 184 QETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242
+E F A Y ++ AKV+ RT G+SKG+GFV F E +++TE N + + +P+ +
Sbjct: 339 EEEF-APYGTITSAKVM--RTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 243 PAATKKAATGQQYQKATYQN 262
A K Q Q+ +N
Sbjct: 396 IAQRKDVRRSQLAQQIQARN 415
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 129/255 (50%), Gaps = 16/255 (6%)
Query: 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133
++L++G+L + E+ I +F G + K+I + N + Y F+EF H A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALA 64
Query: 134 TFNGTQMPSTEQNFRLNWATYGAGERR----------QDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E ++NWAT + +++ Q F +FVGDL+ ++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+ F A + + A+VV D TG+SKGYGFV F ++ + ++ +M G R +R
Sbjct: 123 KAAF-APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 244 AATKKAATGQQYQKATYQNTQGS-QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV 302
A K A Y+ T Q + ++ P+N T++ GG+ +T+ +++ F +G+++
Sbjct: 182 ATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241
Query: 303 HVKIPAGKRCGFVQF 317
+++ K FV+F
Sbjct: 242 EIRVFPDKGYSFVRF 256
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 26/173 (15%)
Query: 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135
+++GDL P + I + F G +V+++ T S+GYGF+ F + AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 136 NGTQMPSTEQNFRLNWAT---------YGAGERR--------QDDGPDFTIFVGDLAADV 178
G + + R NWAT Y + ++ Q + T++ G + + +
Sbjct: 168 GGQWLGGRQ--IRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231
T+ ++++TF + + + +V D KGY FVRF ++ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 27/253 (10%)
Query: 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERV 131
G SL++GDL + +S + FG G V+ +V R+ T S GYG++ F + A R
Sbjct: 34 GNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 132 LQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY 191
+Q N +P + R+ ++ RR G IF+ +L + L +TF + +
Sbjct: 94 IQELN--YIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-F 147
Query: 192 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251
++ KV D ++G+SKGYGFV++ +E +++ ++NG+L + + + +GP +
Sbjct: 148 GNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR---- 202
Query: 252 GQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPA 308
Q + +T T+ T ++V L S TDD LK FG+YG++ V +K
Sbjct: 203 --QERDSTANKTK---------FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE 251
Query: 309 GKR--CGFVQFAN 319
GK GFV F N
Sbjct: 252 GKSKGFGFVNFEN 264
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L + + + FG G+ S V+++ + S+G+GF+ F + A R +++
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVES 274
Query: 135 FNGTQMPS---------------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVT 179
NG + TE R A ++ Q ++V +L ++
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS----NLYVKNLDPSIS 330
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
D L+E F + + +V +KV+ D G SKG GFV F E +M++++G + ++P+
Sbjct: 331 DEKLKEIF-SPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
Query: 240 RIGPAATKK 248
+ A K+
Sbjct: 389 YVAIAQRKE 397
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 306 I---PAGKRCGF 314
+ +GK GF
Sbjct: 222 VMTDESGKSKGF 233
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 I---PAGKRCGF 314
+ +GK GF
Sbjct: 222 VMTDESGKSKGF 233
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 I---PAGKRCGF 314
+ +GK GF
Sbjct: 222 VMTDESGKSKGF 233
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 23/243 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + + A ER L+
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++
Sbjct: 112 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 165
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + ++ +NG+L + + + +G +KK
Sbjct: 166 LSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK------ 218
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI---PAGKR 311
+ Q E N T I++ +DP VT++ + +F Q+GE+ + P GK
Sbjct: 219 -------DRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS 271
Query: 312 CGF 314
GF
Sbjct: 272 RGF 274
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 19/248 (7%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 131 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 189
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + + +FT I++ ++ DVT +
Sbjct: 190 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVT----E 245
Query: 185 ETFRAVYS---SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
E FR ++ + A + D G+S+G+GFV + ++ EM+ T+ + +
Sbjct: 246 EEFRKIFEQFGEITSATLSRD-PEGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYV 304
Query: 242 GPAATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298
G A K + +QY+ A + QG N ++V L V D+ L+ +FG Y
Sbjct: 305 GRAQKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPY 358
Query: 299 GELVHVKI 306
G + K+
Sbjct: 359 GTITSAKV 366
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 69/254 (27%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ P + E IF GE S + R+ + S G+GF+ + +H +A+ +
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGK-SRGFGFVNYSTHESAQAAVDE 291
Query: 135 FNGTQMPS-------------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
+ ++ + E+ R + + + G ++V +L DV D
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQG--VNLYVKNLTDDVDDE 349
Query: 182 VLQETFRAVYSSVKGAKVVTDRT------------------------------------- 204
L+E F Y ++ AKV+ D T
Sbjct: 350 KLRELF-GPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKES 408
Query: 205 ---------------TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249
G+SKG+GFV F E +++TEMN + + +P+ + A K
Sbjct: 409 DEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDV 468
Query: 250 ATGQQYQKATYQNT 263
Q +NT
Sbjct: 469 RRSQLEASIQARNT 482
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 118/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 306 I---PAGKRCGF 314
+ +GK GF
Sbjct: 222 VMTDESGKSKGF 233
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK FGQYG + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVK 221
Query: 306 IPA---GKRCGF 314
+ GK GF
Sbjct: 222 VMTDDHGKSRGF 233
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + FG G +S KV+ + S G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGK-SRGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG + E+ L + R ++V +L
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEFTP-FGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 24/252 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL P E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG++G + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 306 I---PAGKRCGF 314
+ +GK GF
Sbjct: 222 VMTDESGKSKGF 233
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 94/192 (48%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M++ + +FG G +S KV+ + ++ S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG ++ E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEF-SPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 130/282 (46%), Gaps = 28/282 (9%)
Query: 41 VPPPVGWTPQPVPPPSQQTQPYGVAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEF 100
VP P T VP P VA + SL+ GDL P + E+++ +F H
Sbjct: 18 VPSPTAQTSVQVPVSIPLPSPVVVADQTHPNS--SLYAGDLDPKVTEAHLFDLFKHVANV 75
Query: 101 VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR 160
VS +V R+ Q S GY +I F + A R ++ N T P ++ R+ + R
Sbjct: 76 VSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEALNYT--PLFDRPIRIMLSNRDPSTRL 132
Query: 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220
G IF+ +L A + + L ETF + + ++ KV D TGRSKGYGFV+F E
Sbjct: 133 SGKG---NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMD-VTGRSKGYGFVQFEKEE 187
Query: 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVG 280
++ ++NG+L + + + +G ++ ++A +NT P T ++V
Sbjct: 188 SAQAAIDKLNGMLMNDKQVFVGHFIRRQ-------ERARDENTP------TPRFTNVYVK 234
Query: 281 GLDPSVTDDILKTVFGQYGELVHVKI----PAGKRC-GFVQF 317
L + +D L+ FG++G + + RC GFV F
Sbjct: 235 NLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNF 276
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L + E + FG G S V+R++ N S +GF+ F AA ++
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEK 288
Query: 135 FNGTQM-------------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
NG + E+ R + + G + +++ +L V D
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN--LYLKNLDDSVDDE 346
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + Y +V +KV+ + G S+G+GFV + + E LR+++EMNG + +P+ I
Sbjct: 347 KLKEMF-SEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Query: 242 GPAATKK 248
A K+
Sbjct: 405 ALAQRKE 411
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 24/244 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A E+ L+
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + L +TF A + ++
Sbjct: 122 LNYTLIKG--RPCRIMWSQRDPALRKTGQG---NVFIKNLDVAIDNKALHDTF-AAFGNI 175
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + + +++ +NG+L + + + +G KK
Sbjct: 176 LSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKK------ 228
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP----AGK 310
+ Q E N T I+V ++P VTDD +T+F +YG++ + GK
Sbjct: 229 -------DRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGK 281
Query: 311 RCGF 314
GF
Sbjct: 282 SRGF 285
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 113/245 (46%), Gaps = 12/245 (4%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 141 PALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETD 199
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA + ++ NG + + + + + +FT I+V ++ +VTD +
Sbjct: 200 EAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFR 259
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
F Y V + + D+ TG+S+G+GFV F + +++ E+N + + +G A
Sbjct: 260 TLFEK-YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRA 318
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + + Y+ A + QG N +++ LD V D+ L+ +F ++G +
Sbjct: 319 QKKHEREEELRKSYEAARQEKASKYQGVN------LYIKNLDDEVDDEKLRQLFSEFGPI 372
Query: 302 VHVKI 306
K+
Sbjct: 373 TSAKV 377
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 12/142 (8%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ P + + ++F G+ S + R+++T S G+GF+ F SH A + +Q
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 135 FN-----------GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
N G E+ L + A + + +++ +L +V D L
Sbjct: 303 LNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKL 362
Query: 184 QETFRAVYSSVKGAKVVTDRTT 205
++ F + + + AKV+ D T
Sbjct: 363 RQLF-SEFGPITSAKVMRDSIT 383
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
+ +++VG LDPSVT+ +L +F Q G + +++
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRV 92
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 117/257 (45%), Gaps = 26/257 (10%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A S + SL++GDL + E+ + F G +S +V R+ T S GY ++ F
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A AER L T N + + R+ W+ R+ G IF+ +L + + L +
Sbjct: 63 ADAERALDTMNFDVIKG--RPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYD 117
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KVV D SKGYGFV F + R++ +MNG+L + R + +G
Sbjct: 118 TFSA-FGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK 174
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
++K + G T +++ + D+ LK +FG+YG + VK
Sbjct: 175 SRK-------------EREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
Query: 306 IPA-----GKRCGFVQF 317
+ K GFV F
Sbjct: 222 VMTDDNGKSKGFGFVSF 238
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + M + + +FG G +S KV+ + S+G+GF+ F H
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGK-SKGFGFVSFERHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A++ + NG M E+ L + R ++V +L
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + ++ AKV+ + GRSKG+GFV F E +++TEMNG + +T
Sbjct: 304 GIDDERLRKEFLP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 237 RPMRIGPAATKK 248
+P+ + A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 123/250 (49%), Gaps = 26/250 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++GDL P + ES++ +F + +V R+ T+ S GY ++ F + A R +++
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 118
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N P ++ R+ + R G +F+ +L A + + L ETF + + ++
Sbjct: 119 LN--YAPIRDRPIRIMLSNRDPSTRLSGKG---NVFIKNLDASIDNKALYETFSS-FGTI 172
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D GRSKGYGFV+F E ++ ++NG+L + + + +G +
Sbjct: 173 LSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR------- 224
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL---VHVKIPAG-- 309
Q+ S+ P+ T ++V L +TDD LK FG+YG++ V +K +G
Sbjct: 225 ------QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS 278
Query: 310 KRCGFVQFAN 319
+ GFV F +
Sbjct: 279 RSFGFVNFVS 288
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L + + + FG G+ S V++++ N S +GF+ FVS AA ++
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEK 298
Query: 135 FNGTQM-------------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
NG + E+ R + + G + +++ +L V D
Sbjct: 299 MNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN--LYLKNLDDSVNDE 356
Query: 182 VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241
L+E F + Y +V KV+ + + G S+G+GFV + + E L +M EMNG + +P+ +
Sbjct: 357 KLKEMF-SEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Query: 242 GPAATKK 248
A K+
Sbjct: 415 ALAQRKE 421
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 130/268 (48%), Gaps = 30/268 (11%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F +H
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADV 178
AA R +QT NG + + ++ R YGA +FT +++ + D+
Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDM 202
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
D L+E F A + + KV+ D +GRS+G+GFV +G+ E ++++EMNG + R
Sbjct: 203 DDKRLREIFSA-FGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260
Query: 239 MRIGPA---ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVF 295
+ +G A +++ +++++ + QG N ++V LD + DD L+ F
Sbjct: 261 IYVGRAQKRIERQSELKRKFEQIKQERINRYQGVN------LYVKNLDDGIDDDRLRKEF 314
Query: 296 GQYGELVHVKIPA----GKRCGFVQFAN 319
YG + K+ K GFV F++
Sbjct: 315 LPYGTITSAKVMTEGGHSKGFGFVCFSS 342
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 26/252 (10%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL+IGDL P + E+ + F G +S +V R+ T S Y +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
++ KVV D S+GYGFV F R++ MNG+L + R + +G +++
Sbjct: 124 NILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR---- 177
Query: 253 QQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---- 308
+ G T +++ + D L+ +F +G + VK+
Sbjct: 178 ---------ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSG 228
Query: 309 -GKRCGFVQFAN 319
+ GFV + N
Sbjct: 229 RSRGFGFVNYGN 240
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I + M++ + IF G +S KV+ + + S G+GF+ + +H A++ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 135 FNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E+ L + R + ++V +L + D L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F Y ++ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ +
Sbjct: 311 RKEFLP-YGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
Query: 244 AATK---KAATGQQY 255
A K KA QY
Sbjct: 368 AQRKEERKAILTNQY 382
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 24/157 (15%)
Query: 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224
P ++++GDL DVT+ +L E F + +V D T RS Y ++ F ++ R
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPA-GPIMSIRVCRDIATRRSLSYAYINFQQPADAER 67
Query: 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDP 284
++ MN + RP+RI +Q G +F+ LD
Sbjct: 68 ALDTMNFEVIKGRPIRI-------------------MWSQRDPGLRKSGVGNVFIKNLDE 108
Query: 285 SVTDDILKTVFGQYGELVHVKIPA---GKR-CGFVQF 317
S+ + L F +G ++ K+ G R GFV F
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHF 145
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 25/250 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G S +V R+ T S GY ++ + + A ++ +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N ++ + R+ W+ R++ G IF+ +L + + L ETF + + V
Sbjct: 111 LNYAEING--RPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETF-STFGEV 164
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G S+G+GFV F +ES+ ++ +NG+L + + + KK +
Sbjct: 165 LSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISK- 222
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----- 309
E N T I+V +D TD+ + +F QYGE+V +
Sbjct: 223 ------------LEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKP 270
Query: 310 KRCGFVQFAN 319
K GFV F +
Sbjct: 271 KGFGFVNFVD 280
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 18/262 (6%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L P ++ + F GE +S KV ++ N S G+GF+ F
Sbjct: 130 PAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGN-SRGFGFVHFKEE 188
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
+ A+ ++ NG M E ++ + ++ +FT I+V ++ + TD +
Sbjct: 189 SDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFE 248
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + Y + A + D G+ KG+GFV F D + +++ E+NG ++ + +G A
Sbjct: 249 QLF-SQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRA 306
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K +QY++ + QG N +F+ LD S+ D+ LK F YG +
Sbjct: 307 QKKYERAEELKKQYEQYRLEKLAKFQGVN------LFIKNLDDSIDDEKLKEEFAPYGTI 360
Query: 302 VHVKIPA-----GKRCGFVQFA 318
++ K GFV F+
Sbjct: 361 TSARVMRDQEGNSKGFGFVCFS 382
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ ++ + +F GE VS + ++ + +G+GF+ FV H AA + ++
Sbjct: 232 NIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEE 290
Query: 135 FNGTQMPSTEQNFRLNWATYGAGER--------RQDDGPDF---TIFVGDLAADVTDYVL 183
NG + S Y E R + F +F+ +L + D L
Sbjct: 291 LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKL 350
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F A Y ++ A+V+ D+ G SKG+GFV F E ++MTE N + + +P+ +
Sbjct: 351 KEEF-APYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAI 408
Query: 244 AATKKAATGQQYQKATYQN 262
A K Q Q+ +N
Sbjct: 409 AQRKDVRRSQLAQQIQARN 427
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 273 NNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306
NN +++VG LDP++T+ +L VF G + +++
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRV 81
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 114/248 (45%), Gaps = 26/248 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + IF G S +V R+ T S GY ++ F++ A ER ++
Sbjct: 48 SLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 107
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N + + + R+ W+ RR G IF+ +L A + + L +TF A + ++
Sbjct: 108 LNYSLI--RNRPCRIMWSQRDPALRRTGQG---NIFIKNLDAGIDNKALHDTF-AAFGNI 161
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV T+ T S GYGFV + ++ +NG+L + + + +G +K
Sbjct: 162 LSCKVATNETG--SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVYVGHHIPRK------ 213
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP-----AG 309
Q E N T ++ +DP VTDD + +F ++G++ +
Sbjct: 214 -------ERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKS 266
Query: 310 KRCGFVQF 317
K GFV F
Sbjct: 267 KGFGFVNF 274
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++ ++ P + + +F G+ S V++ + S+G+GF+ F H A++ +
Sbjct: 228 NVYAKNVDPEVTDDEFEKLFTKFGKITSC-VLQRDEDGKSKGFGFVNFEDHNEAQKAVDE 286
Query: 135 -----FNGTQM------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
F G ++ +E+ L + A + +++ ++ D L
Sbjct: 287 LHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERL 346
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
+E F A + ++ K++ +G S+G+GFV + E ++++EMNG + RP+ +
Sbjct: 347 REEF-APFGAITSCKIMRA-PSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVAL 404
Query: 244 AATK 247
A K
Sbjct: 405 AQRK 408
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 30/268 (11%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G +S KV+ ++ S GYGF+ F +
Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADV 178
AA R +QT NG + + ++ R YGA +FT +++ + D+
Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDM 202
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
D L+E F A + + KV+ D TGRS+G+GFV +G+ E ++++EMNG + R
Sbjct: 203 DDKRLREIFSA-FGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRM 260
Query: 239 MRIGPAATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVF 295
+ +G A + G+ ++++ + QG N ++V LD + DD L+ F
Sbjct: 261 IYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN------LYVKNLDDGIDDDRLRKEF 314
Query: 296 GQYGELVHVKIPA----GKRCGFVQFAN 319
YG + K+ K GFV F++
Sbjct: 315 SPYGTITSAKVMTEGGHSKGFGFVCFSS 342
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 26/252 (10%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL++GDL P + E+ + F G +S +V R+ T S GY +I F A AER L
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
++ KVV D S+GYGFV F + R++ MNG+L + R + +G +++
Sbjct: 124 NILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR---- 177
Query: 253 QQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---- 308
+ G T +++ + D L+ +F +G + VK+
Sbjct: 178 ---------ERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTG 228
Query: 309 -GKRCGFVQFAN 319
+ GFV + N
Sbjct: 229 RSRGFGFVNYGN 240
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I + M++ + IF G +S KV+ + T S G+GF+ + +H A++ +
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 135 FNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E+ L + R + ++V +L + D L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y ++ AKV+T+ G SKG+GFV F E +++TEMNG + ST+P+ +
Sbjct: 311 RKEF-SPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
Query: 244 AATK---KAATGQQY 255
A K KA QY
Sbjct: 368 AQRKEERKAILTNQY 382
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 24/157 (15%)
Query: 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224
P +++VGDL DVT+ +L E F + +V D T RS GY ++ F ++ R
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPA-GPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDP 284
++ MN + RP+RI +Q G +F+ LD
Sbjct: 68 ALDTMNFEVIKGRPIRI-------------------MWSQRDPGLRKSGVGNVFIKNLDE 108
Query: 285 SVTDDILKTVFGQYGELVHVKIPA---GKR-CGFVQF 317
S+ + L F +G ++ K+ G R GFV F
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHF 145
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 119/258 (46%), Gaps = 28/258 (10%)
Query: 67 DASSDG--IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
+AS G + SL++GDL P + E+ + F G +S +V R+ T S GY +I F
Sbjct: 2 NASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQ 61
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A AER L T N + Q R+ W+ G R+ G IF+ +L + + L
Sbjct: 62 PADAERALDTMNFEMLKG--QPIRIMWSQRDPGLRKSGVG---NIFIKNLEDSIDNKALY 116
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF + + ++ KV D S+G+GFV F +++ MNG+L + R + +G
Sbjct: 117 DTF-STFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHF 173
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+++ + G T I+V L V + L+ +F Q+G+++ V
Sbjct: 174 KSRR-------------EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 305 KI----PAGKRC-GFVQF 317
K+ RC GFV F
Sbjct: 221 KVMRDNSGHSRCFGFVNF 238
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 124/267 (46%), Gaps = 28/267 (10%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L+ ++ + F G +S KV ++ S G+GF+ F +H
Sbjct: 91 PGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETH 148
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQD-----DGPDFT-IFVGDLAADVT 179
AA++ + T NG + N R + + R ++ +FT I+V +L DV
Sbjct: 149 EAAQQAINTMNGMLL-----NDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239
+ LQ+ F + + + KV+ D +G S+ +GFV F E +++ MNG S R +
Sbjct: 204 EQGLQDLF-SQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Query: 240 RIGPA---ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG 296
G A ++ +++++ + QG N ++V LD S+ DD L+ F
Sbjct: 262 YAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVN------LYVKNLDDSIDDDKLRKEFS 315
Query: 297 QYGELVHVKIPA----GKRCGFVQFAN 319
YG + K+ K GFV F++
Sbjct: 316 PYGVITSAKVMTEGGHSKGFGFVCFSS 342
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 97/195 (49%), Gaps = 18/195 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
++++ +L ++E + +F G+ +S KV+R+ + S +GF+ F H A++ +
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 135 FNGTQMP--------STEQNFRLNWATYGAGERRQDDGPDF---TIFVGDLAADVTDYVL 183
NG ++ + ++ R N + +QD + ++V +L + D L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y + AKV+T+ G SKG+GFV F E +++TEMNG + T+P+ +
Sbjct: 311 RKEF-SPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 244 AATK---KAATGQQY 255
A K KA QY
Sbjct: 368 AQRKEERKAILTNQY 382
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 120/258 (46%), Gaps = 25/258 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 44 PSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +
Sbjct: 104 ADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHD 158
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 159 TF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+KK + Q E N T +++ +D VTD+ + +F ++GE+
Sbjct: 217 SKK-------------DRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 306 IP-----AGKRCGFVQFA 318
+ + GFV F+
Sbjct: 264 LSRDQEGKSRGFGFVNFS 281
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 111/245 (45%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 132 PALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 190
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT +++ ++ +VTD +
Sbjct: 191 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFR 250
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D+ G+S+G+GFV F ++ EMN + + +G A
Sbjct: 251 KMFEK-FGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L V D+ L+ +F +G +
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFSPFGTI 362
Query: 302 VHVKI 306
K+
Sbjct: 363 TSAKV 367
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 89/246 (36%), Gaps = 59/246 (23%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ + + +F GE S + R+ Q S G+GF+ F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 135 FN-----------GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
N G E+ L A + ++V +L DV D L
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 184 QETFRAVYSSVKGAKVVTDRTT-------------------------------------- 205
+E F + + ++ AKV+ D T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 206 --------GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK 257
G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEAS 471
Query: 258 ATYQNT 263
+NT
Sbjct: 472 IQARNT 477
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 24/250 (9%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
ASS + SL++GDL + E+ + F G +S +V R+ T S GY ++ F A
Sbjct: 5 ASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 128 AERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETF 187
AER L T N + + R+ W+ R+ G +F+ +L + + L +TF
Sbjct: 65 AERALDTMNFDVIKG--KPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTF 119
Query: 188 RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
A + ++ KVV D SKGY FV F + +++ +MNG+L + R + +G ++
Sbjct: 120 SA-FGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI- 306
K + G T +++ V D+ LK +F Q+G+ + VK+
Sbjct: 177 K-------------EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVM 223
Query: 307 --PAGKRCGF 314
P GK GF
Sbjct: 224 RDPNGKSKGF 233
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 18/202 (8%)
Query: 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAA 127
A + +++I + +++ + +F G+ +S KV+R+ S+G+GF+ + H
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGK-SKGFGFVSYEKHED 243
Query: 128 AERVLQTFNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAA 176
A + ++ NG ++ E+ L + R +++ +L
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236
+ D L++ F + + S+ AKV+ + GRSKG+GFV F E +++TEMNG + +
Sbjct: 304 TIDDEKLRKEF-SPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 237 RPMRIGPAATK---KAATGQQY 255
+P+ + A K KA QY
Sbjct: 361 KPLYVALAQRKEERKAHLTNQY 382
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 30/268 (11%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G+ +++I +L ++ + F G+ +S KV+ ++ S GYGF+ F +
Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQ 148
Query: 126 AAAERVLQTFNGTQMPSTE------QNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADV 178
AA R +QT NG + + ++ R YGA +FT +++ + D+
Sbjct: 149 EAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVM------EFTNVYIKNFGEDM 202
Query: 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238
D L+E F A + + KV+ D +GRS+G+GFV +G+ E +++TEMNG + R
Sbjct: 203 DDKRLKEIFSA-FGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRM 260
Query: 239 MRIGPAATKKAATGQ---QYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVF 295
+ +G A + G+ ++++ + QG N ++V LD + DD L+ F
Sbjct: 261 VYVGRAQKRIERQGELKRKFEQIKQERINRYQGVN------LYVKNLDDGIDDDRLRKEF 314
Query: 296 GQYGELVHVKIPA----GKRCGFVQFAN 319
YG + K+ K GFV F++
Sbjct: 315 SPYGTITSTKVMTEGGHSKGFGFVCFSS 342
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 112/252 (44%), Gaps = 26/252 (10%)
Query: 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132
+ SL+IGDL P + E+ + F G +S +V R+ T S GY +I F A AER L
Sbjct: 10 LASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 133 QTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS 192
T N + + R+ W+ G R+ G +F+ +L + + L +TF A +
Sbjct: 70 DTMNFEVIKG--RPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FG 123
Query: 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252
+ KVV D S+GYGFV F + R++ MNG+L + R + +G +++
Sbjct: 124 DILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR---- 177
Query: 253 QQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA---- 308
+ G T +++ + D LK +F +G + VK+
Sbjct: 178 ---------ERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSG 228
Query: 309 -GKRCGFVQFAN 319
+ GFV + N
Sbjct: 229 RSRGFGFVNYGN 240
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 18/195 (9%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I + M++ + IF G +S KV+ + + S G+GF+ + +H A++ +
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 135 FNGTQM-----------PSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
NG ++ E+ L + R + ++V +L + D L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 184 QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243
++ F + Y ++ KV+T+ G SKG+GFV F E +++TEMNG + ST+P+ +
Sbjct: 311 RKEF-SPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367
Query: 244 AATK---KAATGQQY 255
A K KA QY
Sbjct: 368 AQRKEERKAILTNQY 382
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224
P ++++GDL DVT+ +L E F + +V D T RS GY ++ F ++ R
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPA-GPIMSIRVCRDIATRRSLGYAYINFQQPADAER 67
Query: 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDP 284
++ MN + RP+RI +Q G +F+ LD
Sbjct: 68 ALDTMNFEVIKGRPIRI-------------------MWSQRDPGLRKSGVGNVFIKNLDD 108
Query: 285 SVTDDILKTVFGQYGELVHVKIPA---GKR-CGFVQF 317
S+ + L F +G+++ K+ G R GFV F
Sbjct: 109 SIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHF 145
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 25/259 (9%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
AP+AS SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 40 APNASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNN 99
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L
Sbjct: 100 TADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALH 154
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 155 DTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHH 212
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+KK + Q E N T +++ +D VT++ + +F ++GE+
Sbjct: 213 ISKK-------------DRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSA 259
Query: 305 KIP-----AGKRCGFVQFA 318
+ + GFV F+
Sbjct: 260 TLSRDQEGKSRGFGFVNFS 278
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 113/245 (46%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 129 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 187
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT +++ ++ DVT+ +
Sbjct: 188 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFR 247
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
E F + + A + D+ G+S+G+GFV F ++ EMN T+ + +G A
Sbjct: 248 ELFEK-FGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRA 305
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L V D+ L+ +FG YG +
Sbjct: 306 QKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFGPYGTI 359
Query: 302 VHVKI 306
K+
Sbjct: 360 TSAKV 364
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 203 RTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQN 262
+ G+SKG+GFV F E +++TEMN + + +P+ + A K Q +N
Sbjct: 427 KGLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARN 486
Query: 263 T 263
T
Sbjct: 487 T 487
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 120/259 (46%), Gaps = 25/259 (9%)
Query: 65 APDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS 124
AP A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNN 104
Query: 125 HAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQ 184
A ER L+ N T + + R+ W+ R+ G +F+ +L + + + L
Sbjct: 105 TADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALH 159
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 160 DTF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHH 217
Query: 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV 304
+KK + Q E N T +++ LD + DD + +F ++GE+
Sbjct: 218 ISKK-------------DRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSA 264
Query: 305 KIP-----AGKRCGFVQFA 318
+ + GFV F+
Sbjct: 265 TLSRDQEGKSRGFGFVNFS 283
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 113/245 (46%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 134 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 192
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT +++ +L +++ D +
Sbjct: 193 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFR 252
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D+ G+S+G+GFV F ++ EMN ++ + +G A
Sbjct: 253 KMFEK-FGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRA 310
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L + D+ L+ +FG YG +
Sbjct: 311 QKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDIDDEKLRELFGPYGTI 364
Query: 302 VHVKI 306
K+
Sbjct: 365 TSAKV 369
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
K AK + G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 421 KEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQL 480
Query: 255 YQKATYQNT 263
+NT
Sbjct: 481 EASIQARNT 489
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 25/258 (9%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P A+ SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + +
Sbjct: 44 PSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNT 103
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQE 185
A ER L+ N T + + R+ W+ R+ G +F+ +L A + + L +
Sbjct: 104 ADGERALEDLNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDAAIDNKALHD 158
Query: 186 TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245
TF A + ++ KV D G SKGYGFV + ++ +NG+L + + + +G
Sbjct: 159 TF-AAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHI 216
Query: 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305
+KK + Q E N T +++ +D VTD+ + +F ++GE+
Sbjct: 217 SKK-------------DRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSAT 263
Query: 306 IP-----AGKRCGFVQFA 318
+ + GFV F+
Sbjct: 264 LSRDQEGKSRGFGFVNFS 281
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 111/245 (45%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV +++ N S+GYGF+ + +
Sbjct: 132 PALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETA 190
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT +++ ++ +VTD +
Sbjct: 191 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFR 250
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D+ G+S+G+GFV F ++ EMN + + +G A
Sbjct: 251 KMFEK-FGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRA 308
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L V D+ L+ +F +G +
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVN------LYVKNLTDDVDDEKLRELFSPFGTI 362
Query: 302 VHVKI 306
K+
Sbjct: 363 TSAKV 367
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 89/244 (36%), Gaps = 57/244 (23%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ + + +F GE S + R+ Q S G+GF+ F +H +A+ +
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 135 FN-----------GTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVL 183
N G E+ L A + ++V +L DV D L
Sbjct: 293 MNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKL 352
Query: 184 QETFRAVYSSVKGAKVVTDRTT-------------------------------------- 205
+E F + + ++ AKV+ D T
Sbjct: 353 RELF-SPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 206 ------GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKAT 259
G+SKG+GFV F E +++TEMN + + +P+ + A K Q
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 471
Query: 260 YQNT 263
+NT
Sbjct: 472 ARNT 475
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 25/249 (10%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
SL++G+L P + E+ + +F G+ S +V R+ T S GY ++ + A ER L
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 135 FNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194
N T + + R+ W+ R+ G +F+ +L + + + L +TF A + ++
Sbjct: 103 LNYTLIKG--KPCRIMWSQRDPALRKTGQG---NVFIKNLDSAIDNKALHDTF-AAFGNI 156
Query: 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ 254
KV D G SKGYGFV + ++ +NG+L + + + +G +KK
Sbjct: 157 LSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK------ 209
Query: 255 YQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP-----AG 309
+ Q E N T I++ +DP V D+ + +F ++GE+ +
Sbjct: 210 -------DRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKS 262
Query: 310 KRCGFVQFA 318
+ GFV F+
Sbjct: 263 RGFGFVNFS 271
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 13/245 (5%)
Query: 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125
P G +++I +L ++ + F G +S KV ++ + S+GYGF+ + +
Sbjct: 122 PALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETA 180
Query: 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFT-IFVGDLAADVTDYVLQ 184
AA ++ NG + + + + + ++ +FT I++ ++ +V D +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFR 240
Query: 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244
+ F + + A + D + G+S+G+GFV F ++ EMN ++ + +G A
Sbjct: 241 KLFEK-FGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRA 298
Query: 245 ATK---KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL 301
K + +QY+ A + QG N ++V L V DD L+ +FG YG +
Sbjct: 299 QKKHEREEELRKQYEAARMEKASKYQGVN------LYVKNLTDDVDDDKLRELFGPYGTI 352
Query: 302 VHVKI 306
K+
Sbjct: 353 TSAKV 357
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 67/236 (28%)
Query: 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134
+++I ++ P +E+ +F GE S + R+ + S G+GF+ F +H +A+ ++
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEE 282
Query: 135 FNGTQMPS-------------TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDY 181
N ++ S E+ R + + + G ++V +L DV D
Sbjct: 283 MNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQG--VNLYVKNLTDDVDDD 340
Query: 182 VLQETFRAVYSSVKGAKVVTDRT------------------------------------- 204
L+E F Y ++ AKV+ D
Sbjct: 341 KLRELF-GPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKE 399
Query: 205 -------------TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247
G+SKG+GFV F E +++TEMN + + +P+ + A K
Sbjct: 400 EKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,339,785
Number of Sequences: 539616
Number of extensions: 5715973
Number of successful extensions: 77791
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 628
Number of HSP's that attempted gapping in prelim test: 36020
Number of HSP's gapped (non-prelim): 22764
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)