Query 020847
Match_columns 320
No_of_seqs 247 out of 3094
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 05:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2E-43 4.3E-48 314.2 27.6 240 72-319 2-320 (352)
2 KOG0117 Heterogeneous nuclear 100.0 1.3E-42 2.7E-47 293.6 23.4 220 71-320 81-303 (506)
3 TIGR01628 PABP-1234 polyadenyl 100.0 6E-41 1.3E-45 314.8 25.8 222 75-319 2-228 (562)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-39 4.1E-44 295.4 26.0 218 71-320 56-279 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-39 4.6E-44 304.3 25.8 240 72-319 87-335 (562)
6 KOG0144 RNA-binding protein CU 100.0 3E-39 6.5E-44 272.0 20.1 184 64-253 25-212 (510)
7 KOG0145 RNA-binding protein EL 100.0 1.5E-38 3.2E-43 251.4 22.7 243 69-319 37-329 (360)
8 KOG0148 Apoptosis-promoting RN 100.0 2.5E-39 5.4E-44 257.1 16.3 209 69-320 2-210 (321)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-37 1.2E-41 281.3 27.9 234 73-319 2-322 (481)
10 TIGR01622 SF-CC1 splicing fact 100.0 9.5E-37 2.1E-41 280.2 28.0 246 70-319 86-419 (457)
11 KOG0127 Nucleolar protein fibr 100.0 3.5E-37 7.5E-42 266.5 21.9 242 74-319 6-343 (678)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3E-36 6.4E-41 276.4 28.6 238 72-319 95-445 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.1E-35 4.5E-40 275.0 29.0 243 67-319 169-473 (509)
14 TIGR01645 half-pint poly-U bin 100.0 1.1E-35 2.5E-40 271.0 21.0 174 72-248 106-285 (612)
15 TIGR01659 sex-lethal sex-letha 100.0 4.6E-35 9.9E-40 254.5 22.5 174 69-250 103-278 (346)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.3E-32 5E-37 243.1 22.7 177 72-249 88-351 (352)
17 KOG0148 Apoptosis-promoting RN 100.0 2.5E-32 5.4E-37 217.3 15.9 170 73-251 62-242 (321)
18 KOG0123 Polyadenylate-binding 100.0 1.7E-31 3.7E-36 233.3 20.2 211 74-319 2-217 (369)
19 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-30 4.3E-35 236.5 20.2 223 72-303 137-370 (578)
20 KOG0123 Polyadenylate-binding 100.0 8.5E-30 1.8E-34 222.6 19.1 236 76-319 79-320 (369)
21 TIGR01659 sex-lethal sex-letha 100.0 3.2E-29 6.9E-34 218.0 17.6 138 161-320 102-245 (346)
22 KOG0145 RNA-binding protein EL 100.0 1.2E-28 2.6E-33 195.3 15.7 179 68-247 122-358 (360)
23 KOG0131 Splicing factor 3b, su 100.0 7.8E-29 1.7E-33 186.4 12.4 175 70-251 6-181 (203)
24 KOG0124 Polypyrimidine tract-b 100.0 5.3E-28 1.1E-32 200.3 15.2 173 72-247 112-290 (544)
25 KOG0117 Heterogeneous nuclear 100.0 8.8E-28 1.9E-32 203.9 15.2 172 71-251 162-335 (506)
26 KOG0127 Nucleolar protein fibr 100.0 3.7E-27 8.1E-32 204.6 18.2 243 73-319 117-505 (678)
27 TIGR01645 half-pint poly-U bin 99.9 3E-27 6.5E-32 216.0 15.6 144 166-320 107-256 (612)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.6E-26 1.2E-30 211.7 22.8 175 70-247 292-502 (509)
29 KOG0144 RNA-binding protein CU 99.9 2.2E-27 4.8E-32 200.6 10.3 137 163-320 31-175 (510)
30 KOG0110 RNA-binding protein (R 99.9 5.5E-26 1.2E-30 203.3 17.1 230 69-319 381-664 (725)
31 KOG0147 Transcriptional coacti 99.9 8.8E-27 1.9E-31 203.1 10.3 251 67-319 173-499 (549)
32 KOG0109 RNA-binding protein LA 99.9 7.3E-27 1.6E-31 188.1 9.0 148 74-247 3-150 (346)
33 TIGR01622 SF-CC1 splicing fact 99.9 2.6E-24 5.6E-29 197.9 17.4 144 165-319 88-237 (457)
34 KOG0146 RNA-binding protein ET 99.9 7.1E-24 1.5E-28 168.9 13.4 181 66-248 12-366 (371)
35 KOG4205 RNA-binding protein mu 99.9 3E-23 6.5E-28 175.2 11.8 175 72-251 5-180 (311)
36 KOG0110 RNA-binding protein (R 99.9 3.1E-23 6.7E-28 185.8 12.3 177 74-251 516-697 (725)
37 KOG4212 RNA-binding protein hn 99.9 2.7E-20 5.8E-25 158.1 21.6 173 68-243 39-290 (608)
38 KOG0124 Polypyrimidine tract-b 99.9 2.4E-22 5.3E-27 166.9 8.6 143 167-320 114-262 (544)
39 KOG4211 Splicing factor hnRNP- 99.9 5.8E-20 1.3E-24 158.7 20.1 167 70-245 7-180 (510)
40 KOG0109 RNA-binding protein LA 99.9 1.1E-21 2.3E-26 158.4 8.7 117 168-318 4-120 (346)
41 KOG0131 Splicing factor 3b, su 99.9 1.3E-21 2.8E-26 147.7 8.5 135 164-319 7-148 (203)
42 KOG1190 Polypyrimidine tract-b 99.8 8.6E-19 1.9E-23 147.9 19.9 238 72-319 149-461 (492)
43 KOG1457 RNA binding protein (c 99.8 1.1E-18 2.3E-23 136.0 16.3 164 66-234 27-273 (284)
44 KOG4205 RNA-binding protein mu 99.8 7E-20 1.5E-24 154.9 9.8 138 165-319 5-148 (311)
45 KOG4206 Spliceosomal protein s 99.8 2.8E-18 6.1E-23 134.8 16.7 163 72-245 8-220 (221)
46 KOG0146 RNA-binding protein ET 99.8 3.3E-19 7.2E-24 142.4 11.5 87 164-252 17-106 (371)
47 KOG0105 Alternative splicing f 99.8 1.5E-18 3.2E-23 131.3 13.9 155 70-235 3-176 (241)
48 KOG0120 Splicing factor U2AF, 99.8 7.4E-19 1.6E-23 155.8 13.1 244 68-319 170-463 (500)
49 PLN03134 glycine-rich RNA-bind 99.8 8.1E-19 1.8E-23 134.2 11.0 86 164-250 32-117 (144)
50 KOG0105 Alternative splicing f 99.8 1.8E-18 4E-23 130.8 12.2 151 165-320 5-160 (241)
51 KOG4206 Spliceosomal protein s 99.8 5.2E-18 1.1E-22 133.4 14.1 151 165-319 8-192 (221)
52 KOG0122 Translation initiation 99.8 5.9E-18 1.3E-22 133.8 10.3 83 164-247 187-269 (270)
53 KOG0147 Transcriptional coacti 99.7 1.1E-17 2.4E-22 146.6 12.3 167 73-247 278-528 (549)
54 KOG1548 Transcription elongati 99.7 1.8E-16 4E-21 131.4 17.7 171 69-247 130-352 (382)
55 PLN03134 glycine-rich RNA-bind 99.7 3.4E-17 7.4E-22 125.2 12.5 85 69-155 30-114 (144)
56 KOG0106 Alternative splicing f 99.7 4.3E-17 9.3E-22 129.6 6.7 153 74-245 2-169 (216)
57 PF00076 RRM_1: RNA recognitio 99.7 2.5E-16 5.5E-21 105.9 9.1 70 169-240 1-70 (70)
58 KOG1457 RNA binding protein (c 99.7 1.3E-15 2.8E-20 119.0 11.6 155 164-319 32-257 (284)
59 KOG1456 Heterogeneous nuclear 99.7 5E-14 1.1E-18 118.1 21.7 237 71-319 29-334 (494)
60 KOG1190 Polypyrimidine tract-b 99.7 6.7E-15 1.5E-19 124.6 16.2 162 73-246 297-490 (492)
61 KOG0122 Translation initiation 99.6 1.4E-15 3.1E-20 120.4 10.9 85 69-155 185-269 (270)
62 KOG0125 Ataxin 2-binding prote 99.6 8.1E-16 1.7E-20 126.7 8.8 81 164-247 94-174 (376)
63 KOG0125 Ataxin 2-binding prote 99.6 2.7E-15 5.9E-20 123.6 11.7 93 66-162 89-181 (376)
64 KOG0121 Nuclear cap-binding pr 99.6 6.7E-16 1.5E-20 109.9 7.1 82 70-153 33-114 (153)
65 KOG0120 Splicing factor U2AF, 99.6 2.7E-15 5.9E-20 133.3 11.9 180 66-248 282-493 (500)
66 KOG0149 Predicted RNA-binding 99.6 8.5E-16 1.8E-20 121.2 7.7 79 166-246 12-90 (247)
67 KOG4212 RNA-binding protein hn 99.6 1.1E-14 2.4E-19 124.3 14.7 153 166-319 44-265 (608)
68 KOG0129 Predicted RNA-binding 99.6 2.5E-14 5.4E-19 125.1 16.9 155 71-228 257-432 (520)
69 KOG1365 RNA-binding protein Fu 99.6 5.7E-15 1.2E-19 124.0 12.5 246 69-319 56-333 (508)
70 COG0724 RNA-binding proteins ( 99.6 9E-15 2E-19 126.0 14.4 142 166-308 115-259 (306)
71 KOG4211 Splicing factor hnRNP- 99.6 8.5E-15 1.9E-19 127.0 13.8 139 166-319 10-154 (510)
72 PF14259 RRM_6: RNA recognitio 99.6 3.9E-15 8.5E-20 100.1 8.6 70 169-240 1-70 (70)
73 KOG0121 Nuclear cap-binding pr 99.6 2.2E-15 4.7E-20 107.3 7.3 80 166-246 36-115 (153)
74 PF00076 RRM_1: RNA recognitio 99.6 3.6E-15 7.8E-20 100.2 7.3 65 76-141 1-65 (70)
75 COG0724 RNA-binding proteins ( 99.6 2.3E-14 5.1E-19 123.4 13.5 152 73-227 115-285 (306)
76 KOG0149 Predicted RNA-binding 99.6 6.6E-15 1.4E-19 116.2 8.2 82 69-151 8-89 (247)
77 PLN03120 nucleic acid binding 99.6 1.1E-14 2.5E-19 119.0 9.9 78 166-248 4-81 (260)
78 KOG0107 Alternative splicing f 99.6 5.3E-15 1.1E-19 111.4 7.3 79 165-249 9-87 (195)
79 KOG4207 Predicted splicing fac 99.6 5.7E-15 1.2E-19 114.0 7.5 87 162-249 9-95 (256)
80 KOG1456 Heterogeneous nuclear 99.6 1.4E-12 3.1E-17 109.4 22.0 238 72-320 119-457 (494)
81 KOG0111 Cyclophilin-type pepti 99.6 1.4E-15 3.1E-20 118.3 3.5 87 166-253 10-96 (298)
82 KOG0126 Predicted RNA-binding 99.6 3.8E-16 8.2E-21 118.1 -0.2 85 165-250 34-118 (219)
83 KOG0106 Alternative splicing f 99.5 9.4E-15 2E-19 116.3 6.7 139 168-319 3-142 (216)
84 KOG0107 Alternative splicing f 99.5 1.6E-14 3.5E-19 108.8 7.0 76 72-152 9-84 (195)
85 KOG0113 U1 small nuclear ribon 99.5 4.6E-14 9.9E-19 115.0 9.7 85 162-247 97-181 (335)
86 PF14259 RRM_6: RNA recognitio 99.5 5E-14 1.1E-18 94.6 7.4 66 76-142 1-66 (70)
87 KOG0114 Predicted RNA-binding 99.5 9.6E-14 2.1E-18 95.2 8.2 83 163-249 15-97 (124)
88 PLN03213 repressor of silencin 99.5 7.6E-14 1.6E-18 121.1 9.5 79 165-248 9-89 (759)
89 smart00362 RRM_2 RNA recogniti 99.5 2.1E-13 4.5E-18 91.7 9.3 72 168-242 1-72 (72)
90 PLN03120 nucleic acid binding 99.5 1.4E-13 3E-18 112.6 9.7 75 73-153 4-78 (260)
91 KOG0108 mRNA cleavage and poly 99.5 7.6E-14 1.7E-18 123.5 8.2 85 167-252 19-103 (435)
92 smart00360 RRM RNA recognition 99.5 2.6E-13 5.7E-18 90.9 8.9 71 171-242 1-71 (71)
93 KOG0114 Predicted RNA-binding 99.5 3.9E-13 8.5E-18 92.3 8.9 78 69-151 14-91 (124)
94 KOG0126 Predicted RNA-binding 99.5 6.1E-15 1.3E-19 111.6 0.0 80 71-152 33-112 (219)
95 KOG0129 Predicted RNA-binding 99.5 1.1E-12 2.3E-17 115.0 13.7 153 164-319 257-422 (520)
96 PLN03121 nucleic acid binding 99.5 3.5E-13 7.5E-18 108.5 9.9 77 166-247 5-81 (243)
97 KOG0130 RNA-binding protein RB 99.5 1.2E-13 2.5E-18 99.5 6.2 85 164-249 70-154 (170)
98 KOG0113 U1 small nuclear ribon 99.5 4E-13 8.8E-18 109.6 9.5 87 67-153 95-181 (335)
99 KOG1365 RNA-binding protein Fu 99.5 8.5E-13 1.9E-17 111.1 11.6 173 71-249 159-364 (508)
100 KOG1548 Transcription elongati 99.4 2.5E-12 5.3E-17 107.1 13.2 153 165-319 133-323 (382)
101 PLN03121 nucleic acid binding 99.4 8.3E-13 1.8E-17 106.3 9.8 75 72-152 4-78 (243)
102 cd00590 RRM RRM (RNA recogniti 99.4 2.6E-12 5.6E-17 86.8 9.8 74 168-243 1-74 (74)
103 PLN03213 repressor of silencin 99.4 9.1E-13 2E-17 114.5 9.2 78 70-153 7-86 (759)
104 smart00361 RRM_1 RNA recogniti 99.4 1.6E-12 3.6E-17 86.9 8.2 62 180-242 2-70 (70)
105 KOG0130 RNA-binding protein RB 99.4 8.3E-13 1.8E-17 95.1 7.1 84 70-155 69-152 (170)
106 KOG4207 Predicted splicing fac 99.4 5.4E-13 1.2E-17 103.2 6.1 82 70-153 10-91 (256)
107 KOG0226 RNA-binding proteins [ 99.4 2.4E-12 5.3E-17 102.8 8.8 172 73-248 96-271 (290)
108 KOG4454 RNA binding protein (R 99.4 1.5E-13 3.2E-18 107.3 1.6 142 70-235 6-151 (267)
109 smart00362 RRM_2 RNA recogniti 99.4 2.7E-12 5.7E-17 86.2 7.6 65 75-141 1-65 (72)
110 PF13893 RRM_5: RNA recognitio 99.3 3.8E-12 8.1E-17 81.3 6.6 56 183-244 1-56 (56)
111 smart00360 RRM RNA recognition 99.3 5.3E-12 1.1E-16 84.4 7.7 65 78-142 1-65 (71)
112 KOG0108 mRNA cleavage and poly 99.3 3.6E-12 7.8E-17 113.0 7.9 80 74-155 19-98 (435)
113 cd00590 RRM RRM (RNA recogniti 99.3 3.7E-11 7.9E-16 81.0 9.2 66 75-141 1-66 (74)
114 KOG0111 Cyclophilin-type pepti 99.3 5.2E-12 1.1E-16 98.7 5.3 83 71-155 8-90 (298)
115 KOG4210 Nuclear localization s 99.3 6.9E-12 1.5E-16 106.3 5.9 179 71-251 86-268 (285)
116 KOG0132 RNA polymerase II C-te 99.2 3.1E-11 6.8E-16 110.3 7.6 80 165-251 420-499 (894)
117 KOG0128 RNA-binding protein SA 99.2 2E-12 4.4E-17 119.3 -0.4 206 72-319 570-786 (881)
118 KOG0128 RNA-binding protein SA 99.2 3.2E-12 6.9E-17 118.0 0.5 151 71-247 665-815 (881)
119 KOG0415 Predicted peptidyl pro 99.2 3.3E-11 7.2E-16 100.7 6.4 86 163-249 236-321 (479)
120 KOG0132 RNA polymerase II C-te 99.2 4.6E-11 9.9E-16 109.3 7.7 108 73-188 421-528 (894)
121 KOG4307 RNA binding protein RB 99.2 5E-10 1.1E-14 101.4 13.2 150 167-319 312-485 (944)
122 smart00361 RRM_1 RNA recogniti 99.1 1.9E-10 4.2E-15 76.8 7.0 57 87-143 2-65 (70)
123 KOG4208 Nucleolar RNA-binding 99.1 3E-10 6.5E-15 88.4 8.3 86 162-247 45-130 (214)
124 KOG0112 Large RNA-binding prot 99.1 1.7E-10 3.6E-15 107.3 6.9 169 66-251 365-535 (975)
125 PF13893 RRM_5: RNA recognitio 99.1 4.9E-10 1.1E-14 71.4 6.2 56 90-152 1-56 (56)
126 KOG4454 RNA binding protein (R 99.1 4.4E-11 9.5E-16 93.6 1.4 120 165-317 8-132 (267)
127 KOG4208 Nucleolar RNA-binding 99.0 5.5E-10 1.2E-14 87.0 7.0 73 71-143 47-120 (214)
128 KOG0153 Predicted RNA-binding 99.0 9.2E-10 2E-14 92.1 7.7 80 161-247 223-303 (377)
129 PF04059 RRM_2: RNA recognitio 99.0 8E-09 1.7E-13 72.4 9.5 82 167-248 2-88 (97)
130 KOG4660 Protein Mei2, essentia 98.9 1.8E-09 3.8E-14 95.9 5.9 133 163-303 72-206 (549)
131 KOG4307 RNA binding protein RB 98.9 6.2E-09 1.3E-13 94.5 9.2 173 71-249 309-516 (944)
132 KOG0533 RRM motif-containing p 98.9 6.4E-09 1.4E-13 85.2 8.0 83 166-250 83-165 (243)
133 KOG0112 Large RNA-binding prot 98.9 1.5E-09 3.2E-14 101.2 4.4 132 164-320 370-501 (975)
134 KOG4661 Hsp27-ERE-TATA-binding 98.9 8E-09 1.7E-13 91.8 8.6 84 164-248 403-486 (940)
135 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.3E-08 7.1E-13 88.0 11.0 83 70-154 402-484 (940)
136 KOG0415 Predicted peptidyl pro 98.8 4.4E-09 9.5E-14 88.2 5.3 79 71-149 237-315 (479)
137 PF04059 RRM_2: RNA recognitio 98.8 3.6E-08 7.7E-13 69.1 8.9 80 74-153 2-85 (97)
138 KOG0153 Predicted RNA-binding 98.8 2.2E-08 4.7E-13 84.0 8.3 79 68-154 223-302 (377)
139 KOG4660 Protein Mei2, essentia 98.8 7.5E-09 1.6E-13 92.0 5.8 165 66-246 68-249 (549)
140 KOG0116 RasGAP SH3 binding pro 98.7 1.5E-07 3.2E-12 83.5 9.5 82 70-152 285-366 (419)
141 KOG4209 Splicing factor RNPS1, 98.7 3.8E-08 8.3E-13 80.9 5.5 84 162-247 97-180 (231)
142 KOG0533 RRM motif-containing p 98.7 1.2E-07 2.6E-12 77.7 8.2 78 69-147 79-156 (243)
143 KOG0151 Predicted splicing reg 98.6 6.4E-08 1.4E-12 88.3 6.8 84 163-247 171-257 (877)
144 KOG0151 Predicted splicing reg 98.6 2.1E-07 4.5E-12 85.0 9.3 85 67-153 168-255 (877)
145 KOG0226 RNA-binding proteins [ 98.6 6E-08 1.3E-12 78.0 4.8 79 71-151 188-266 (290)
146 KOG4210 Nuclear localization s 98.6 4.9E-08 1.1E-12 83.0 4.6 145 164-319 86-236 (285)
147 KOG2193 IGF-II mRNA-binding pr 98.6 7.8E-09 1.7E-13 88.7 -1.0 154 74-247 2-157 (584)
148 KOG4209 Splicing factor RNPS1, 98.5 1.8E-07 3.9E-12 76.9 5.8 81 68-151 96-176 (231)
149 KOG0116 RasGAP SH3 binding pro 98.5 2.5E-07 5.4E-12 82.1 6.5 82 167-250 289-370 (419)
150 PF11608 Limkain-b1: Limkain b 98.5 1.5E-06 3.2E-11 58.0 7.8 74 167-250 3-80 (90)
151 KOG4676 Splicing factor, argin 98.3 2.6E-07 5.7E-12 78.7 1.8 166 74-247 8-226 (479)
152 KOG2193 IGF-II mRNA-binding pr 98.1 1.4E-06 3.1E-11 75.1 2.7 110 167-306 2-112 (584)
153 KOG1995 Conserved Zn-finger pr 98.1 6E-06 1.3E-10 70.2 5.1 85 164-249 64-156 (351)
154 PF08777 RRM_3: RNA binding mo 98.0 1.9E-05 4E-10 56.8 5.7 70 167-243 2-76 (105)
155 KOG0115 RNA-binding protein p5 97.9 5E-05 1.1E-09 61.6 6.9 102 126-243 5-110 (275)
156 KOG4676 Splicing factor, argin 97.9 1E-05 2.2E-10 69.3 3.0 149 168-318 9-197 (479)
157 COG5175 MOT2 Transcriptional r 97.8 4.1E-05 8.8E-10 64.4 6.3 80 167-247 115-203 (480)
158 PF11608 Limkain-b1: Limkain b 97.8 0.0001 2.2E-09 49.4 6.9 67 74-152 3-74 (90)
159 KOG1995 Conserved Zn-finger pr 97.8 5.5E-05 1.2E-09 64.4 6.5 83 70-154 63-153 (351)
160 PF08777 RRM_3: RNA binding mo 97.8 5.2E-05 1.1E-09 54.6 5.2 45 275-319 2-46 (105)
161 KOG4849 mRNA cleavage factor I 97.8 4.6E-05 9.9E-10 64.4 5.3 77 166-243 80-158 (498)
162 KOG0115 RNA-binding protein p5 97.7 4.5E-05 9.7E-10 61.9 4.0 74 219-320 4-82 (275)
163 KOG2314 Translation initiation 97.7 0.00014 3.1E-09 65.4 7.2 79 165-245 57-142 (698)
164 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00017 3.6E-09 44.8 4.9 52 167-226 2-53 (53)
165 KOG2314 Translation initiation 97.6 0.00026 5.6E-09 63.8 7.9 78 71-150 56-139 (698)
166 KOG3152 TBP-binding protein, a 97.6 5.7E-05 1.2E-09 61.3 3.1 72 166-238 74-157 (278)
167 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00022 4.7E-09 44.3 4.7 52 74-132 2-53 (53)
168 KOG1996 mRNA splicing factor [ 97.5 0.00036 7.7E-09 57.8 6.5 68 180-248 300-368 (378)
169 KOG1855 Predicted RNA-binding 97.4 0.00033 7.1E-09 61.1 6.2 77 164-241 229-318 (484)
170 COG5175 MOT2 Transcriptional r 97.4 0.00043 9.3E-09 58.5 6.6 78 74-153 115-201 (480)
171 KOG4849 mRNA cleavage factor I 97.4 0.00026 5.6E-09 60.0 4.9 72 71-142 78-151 (498)
172 KOG2202 U2 snRNP splicing fact 97.3 0.00015 3.3E-09 59.0 2.2 69 181-250 83-151 (260)
173 KOG2416 Acinus (induces apopto 97.2 0.00028 6.2E-09 63.9 3.8 83 162-250 440-525 (718)
174 KOG3152 TBP-binding protein, a 97.2 0.0005 1.1E-08 56.0 4.1 73 72-144 73-157 (278)
175 KOG1855 Predicted RNA-binding 97.2 0.00033 7.2E-09 61.0 3.2 67 71-137 229-308 (484)
176 PF08952 DUF1866: Domain of un 97.1 0.002 4.4E-08 48.5 6.9 74 164-247 25-107 (146)
177 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0018 4E-08 45.8 6.1 78 166-246 6-91 (100)
178 KOG2416 Acinus (induces apopto 97.1 0.00049 1.1E-08 62.4 3.9 80 68-153 439-520 (718)
179 PF10309 DUF2414: Protein of u 97.0 0.0042 9.2E-08 39.5 6.6 53 74-135 6-62 (62)
180 PF10309 DUF2414: Protein of u 96.8 0.011 2.4E-07 37.6 6.9 54 167-229 6-62 (62)
181 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0038 8.3E-08 44.2 5.1 78 72-152 5-89 (100)
182 PF08675 RNA_bind: RNA binding 96.6 0.014 3E-07 39.3 6.8 55 73-136 9-63 (87)
183 PF07576 BRAP2: BRCA1-associat 96.6 0.052 1.1E-06 39.2 10.1 68 71-140 11-79 (110)
184 PF08675 RNA_bind: RNA binding 96.4 0.015 3.2E-07 39.2 5.9 54 168-231 11-64 (87)
185 PF07576 BRAP2: BRCA1-associat 96.3 0.066 1.4E-06 38.7 9.5 68 166-235 13-80 (110)
186 PF10567 Nab6_mRNP_bdg: RNA-re 96.3 0.45 9.7E-06 40.1 15.3 160 70-231 12-213 (309)
187 KOG2253 U1 snRNP complex, subu 96.2 0.0059 1.3E-07 56.5 4.3 69 73-150 40-108 (668)
188 KOG1996 mRNA splicing factor [ 96.0 0.019 4.2E-07 47.9 6.1 63 87-151 300-363 (378)
189 KOG2202 U2 snRNP splicing fact 96.0 0.0043 9.3E-08 50.8 2.1 51 95-146 91-141 (260)
190 KOG2591 c-Mpl binding protein, 96.0 0.047 1E-06 49.7 8.7 72 165-243 174-248 (684)
191 PF15023 DUF4523: Protein of u 95.8 0.066 1.4E-06 39.9 7.3 73 163-244 83-159 (166)
192 KOG0804 Cytoplasmic Zn-finger 95.7 0.081 1.7E-06 47.0 8.7 68 166-235 74-141 (493)
193 KOG2068 MOT2 transcription fac 95.5 0.0079 1.7E-07 51.3 2.1 81 167-248 78-164 (327)
194 PF04847 Calcipressin: Calcipr 95.4 0.036 7.8E-07 44.1 5.2 63 179-248 8-72 (184)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.016 3.4E-07 46.0 3.0 71 71-141 5-81 (176)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.018 3.8E-07 45.7 2.8 70 166-235 7-81 (176)
197 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 0.45 9.8E-06 40.1 10.4 158 161-319 10-200 (309)
198 KOG4574 RNA-binding protein (c 94.7 0.022 4.7E-07 54.3 2.5 75 75-155 300-374 (1007)
199 PF15023 DUF4523: Protein of u 94.6 0.13 2.9E-06 38.4 6.0 72 70-151 83-158 (166)
200 KOG4574 RNA-binding protein (c 94.6 0.023 4.9E-07 54.2 2.5 76 168-250 300-377 (1007)
201 KOG2591 c-Mpl binding protein, 94.5 0.13 2.9E-06 46.9 6.8 67 70-143 172-247 (684)
202 KOG0804 Cytoplasmic Zn-finger 94.3 0.27 5.8E-06 43.9 8.1 66 73-140 74-140 (493)
203 KOG2068 MOT2 transcription fac 94.1 0.037 8E-07 47.4 2.4 71 74-144 78-154 (327)
204 KOG1924 RhoA GTPase effector D 93.7 0.1 2.2E-06 49.7 4.7 9 79-87 608-616 (1102)
205 PF08952 DUF1866: Domain of un 93.5 0.14 2.9E-06 38.8 4.3 52 89-149 52-103 (146)
206 KOG2135 Proteins containing th 92.9 0.056 1.2E-06 48.2 1.8 74 167-248 373-447 (526)
207 PF03880 DbpA: DbpA RNA bindin 92.9 0.51 1.1E-05 31.5 6.0 59 176-244 11-74 (74)
208 KOG2253 U1 snRNP complex, subu 92.7 0.07 1.5E-06 49.7 2.2 123 162-297 36-158 (668)
209 PF11767 SET_assoc: Histone ly 92.4 0.79 1.7E-05 29.7 6.1 55 177-241 11-65 (66)
210 PF07292 NID: Nmi/IFP 35 domai 92.0 0.21 4.5E-06 34.4 3.2 70 212-296 1-74 (88)
211 PF11767 SET_assoc: Histone ly 91.7 0.69 1.5E-05 30.0 5.2 48 84-140 11-58 (66)
212 KOG2318 Uncharacterized conser 91.0 0.85 1.8E-05 42.1 6.9 81 164-245 172-306 (650)
213 PF07292 NID: Nmi/IFP 35 domai 91.0 0.19 4.1E-06 34.6 2.2 70 118-188 1-74 (88)
214 KOG4410 5-formyltetrahydrofola 90.9 0.64 1.4E-05 38.9 5.6 51 270-320 326-377 (396)
215 KOG4410 5-formyltetrahydrofola 90.4 1.5 3.3E-05 36.8 7.3 54 68-126 325-378 (396)
216 PF14111 DUF4283: Domain of un 90.0 0.7 1.5E-05 35.6 5.0 111 177-308 28-139 (153)
217 KOG2135 Proteins containing th 89.6 0.24 5.2E-06 44.4 2.2 78 70-156 369-447 (526)
218 KOG4285 Mitotic phosphoprotein 88.8 0.6 1.3E-05 39.5 3.9 58 76-141 200-257 (350)
219 KOG4285 Mitotic phosphoprotein 88.8 0.92 2E-05 38.4 4.9 77 166-251 197-274 (350)
220 KOG3648 Golgi apparatus protei 88.4 0.32 6.8E-06 45.4 2.2 31 22-52 70-100 (1179)
221 PF04847 Calcipressin: Calcipr 87.2 1.1 2.3E-05 35.8 4.4 59 86-152 8-68 (184)
222 KOG2318 Uncharacterized conser 84.7 8.8 0.00019 35.8 9.2 84 70-153 171-306 (650)
223 KOG2295 C2H2 Zn-finger protein 79.3 0.62 1.4E-05 42.7 0.1 70 72-141 230-299 (648)
224 KOG1924 RhoA GTPase effector D 78.4 4.4 9.5E-05 39.2 5.2 6 224-229 806-811 (1102)
225 KOG4592 Uncharacterized conser 77.6 2.3 5.1E-05 39.7 3.2 11 219-229 429-439 (728)
226 KOG4407 Predicted Rho GTPase-a 75.9 1.1 2.4E-05 45.5 0.7 25 19-43 359-383 (1973)
227 KOG3702 Nuclear polyadenylated 74.7 8.1 0.00017 36.7 5.8 75 166-242 511-585 (681)
228 PF15513 DUF4651: Domain of un 70.7 10 0.00022 24.2 3.8 18 88-105 9-26 (62)
229 KOG4483 Uncharacterized conser 68.4 14 0.0003 32.9 5.5 57 70-133 388-445 (528)
230 PRK10927 essential cell divisi 67.2 42 0.00091 29.1 8.1 64 72-140 246-309 (319)
231 PRK11901 hypothetical protein; 67.1 68 0.0015 28.1 9.3 62 71-137 243-306 (327)
232 KOG2295 C2H2 Zn-finger protein 66.6 0.91 2E-05 41.7 -2.0 71 166-237 231-301 (648)
233 PF03880 DbpA: DbpA RNA bindin 66.3 35 0.00075 22.5 6.6 57 82-147 10-71 (74)
234 KOG2891 Surface glycoprotein [ 66.2 6.1 0.00013 33.2 2.9 36 272-307 147-194 (445)
235 KOG4019 Calcineurin-mediated s 65.4 5 0.00011 31.5 2.1 75 168-248 12-91 (193)
236 PF03468 XS: XS domain; Inter 64.5 11 0.00024 27.6 3.7 51 168-222 10-69 (116)
237 PF07530 PRE_C2HC: Associated 63.9 16 0.00034 23.9 4.0 64 181-247 2-65 (68)
238 PF03468 XS: XS domain; Inter 63.3 8.1 0.00018 28.3 2.8 47 76-125 11-66 (116)
239 TIGR02542 B_forsyth_147 Bacter 63.0 16 0.00035 26.3 4.1 47 174-220 82-130 (145)
240 PRK14548 50S ribosomal protein 63.0 44 0.00096 22.8 6.1 56 170-228 24-80 (84)
241 KOG4483 Uncharacterized conser 62.9 22 0.00048 31.7 5.7 54 166-227 391-445 (528)
242 PF14111 DUF4283: Domain of un 61.0 25 0.00053 26.8 5.4 117 76-201 18-139 (153)
243 PF13388 DUF4106: Protein of u 59.3 8.3 0.00018 32.7 2.5 13 87-99 265-277 (422)
244 KOG3424 40S ribosomal protein 55.2 37 0.0008 24.7 4.8 46 177-223 34-83 (132)
245 PRK11901 hypothetical protein; 54.5 66 0.0014 28.1 7.1 62 165-232 244-307 (327)
246 PF00403 HMA: Heavy-metal-asso 53.0 51 0.0011 20.5 5.0 44 276-319 1-44 (62)
247 TIGR03636 L23_arch archaeal ri 53.0 68 0.0015 21.5 6.2 56 169-227 16-72 (77)
248 KOG4679 Uncharacterized protei 52.4 22 0.00049 32.3 4.1 16 84-99 253-268 (572)
249 COG5178 PRP8 U5 snRNP spliceos 48.4 19 0.0004 36.9 3.3 36 73-108 72-107 (2365)
250 PF13689 DUF4154: Domain of un 48.4 77 0.0017 24.0 6.2 60 180-245 2-61 (145)
251 COG2608 CopZ Copper chaperone 45.7 71 0.0015 20.8 4.9 45 275-319 4-48 (71)
252 PF15258 FAM222A: Protein fami 45.4 38 0.00083 31.1 4.6 14 72-85 193-206 (506)
253 PRK14548 50S ribosomal protein 44.2 91 0.002 21.3 5.3 57 75-134 22-80 (84)
254 PF02714 DUF221: Domain of unk 43.7 49 0.0011 29.0 5.1 34 212-247 1-34 (325)
255 KOG2891 Surface glycoprotein [ 43.4 22 0.00047 30.0 2.5 71 70-140 146-247 (445)
256 KOG1295 Nonsense-mediated deca 43.0 27 0.00059 31.0 3.2 70 71-140 5-77 (376)
257 KOG1151 Tousled-like protein k 41.9 10 0.00022 34.6 0.5 14 77-90 165-178 (775)
258 KOG1546 Metacaspase involved i 41.8 2.5E+02 0.0053 24.8 14.1 58 72-136 63-132 (362)
259 KOG4679 Uncharacterized protei 41.5 98 0.0021 28.4 6.4 20 289-308 534-554 (572)
260 PF11823 DUF3343: Protein of u 41.3 38 0.00082 22.3 3.1 29 211-239 3-31 (73)
261 KOG1151 Tousled-like protein k 40.4 21 0.00045 32.7 2.1 14 167-180 389-402 (775)
262 COG0445 GidA Flavin-dependent 39.3 1.4E+02 0.0031 28.4 7.3 95 211-308 238-335 (621)
263 PF14893 PNMA: PNMA 39.0 39 0.00085 29.8 3.6 80 165-247 17-97 (331)
264 PF03439 Spt5-NGN: Early trans 37.3 55 0.0012 22.2 3.5 26 208-233 43-68 (84)
265 KOG4008 rRNA processing protei 37.1 27 0.00058 28.8 2.1 37 270-306 36-72 (261)
266 smart00596 PRE_C2HC PRE_C2HC d 35.7 72 0.0016 20.9 3.5 63 181-247 2-65 (69)
267 cd04894 ACT_ACR-like_1 ACT dom 35.6 53 0.0012 21.0 2.8 37 281-317 6-44 (69)
268 PRK10263 DNA translocase FtsK; 35.6 31 0.00066 36.2 2.7 13 217-229 1070-1082(1355)
269 PF03439 Spt5-NGN: Early trans 35.4 69 0.0015 21.8 3.7 32 100-136 34-65 (84)
270 PRK01178 rps24e 30S ribosomal 35.3 1.6E+02 0.0035 20.8 6.2 49 176-224 29-80 (99)
271 COG5638 Uncharacterized conser 35.2 60 0.0013 29.1 4.1 42 267-308 139-185 (622)
272 PRK10263 DNA translocase FtsK; 35.1 34 0.00075 35.9 3.0 10 90-99 894-903 (1355)
273 KOG4213 RNA-binding protein La 35.0 63 0.0014 25.6 3.7 58 73-134 111-169 (205)
274 PRK10905 cell division protein 35.0 1.3E+02 0.0028 26.3 5.9 60 166-231 247-308 (328)
275 PRK10905 cell division protein 34.6 63 0.0014 28.2 4.0 52 83-136 254-307 (328)
276 KOG1923 Rac1 GTPase effector F 34.5 87 0.0019 30.7 5.3 16 209-224 604-619 (830)
277 KOG4019 Calcineurin-mediated s 33.7 20 0.00044 28.2 0.9 64 74-143 11-79 (193)
278 PF08549 SWI-SNF_Ssr4: Fungal 33.6 64 0.0014 31.1 4.3 16 178-193 448-463 (669)
279 COG5638 Uncharacterized conser 33.3 3.6E+02 0.0077 24.5 8.4 35 211-245 260-296 (622)
280 KOG0862 Synaptobrevin/VAMP-lik 32.0 50 0.0011 27.0 2.9 32 180-219 88-119 (216)
281 PF02714 DUF221: Domain of unk 31.6 1.1E+02 0.0025 26.7 5.4 57 118-189 1-57 (325)
282 KOG4365 Uncharacterized conser 30.8 11 0.00023 34.1 -1.1 78 167-246 4-81 (572)
283 PF02166 Androgen_recep: Andro 30.5 17 0.00036 31.6 0.0 13 87-99 152-164 (423)
284 KOG1295 Nonsense-mediated deca 30.5 52 0.0011 29.3 2.9 67 167-234 8-77 (376)
285 COG5624 TAF61 Transcription in 30.2 41 0.00089 30.1 2.3 10 179-188 385-394 (505)
286 PF12687 DUF3801: Protein of u 29.9 1.3E+02 0.0027 24.6 4.9 55 84-140 38-95 (204)
287 COG0018 ArgS Arginyl-tRNA synt 29.7 3.1E+02 0.0068 26.5 8.2 101 176-309 56-165 (577)
288 PF12091 DUF3567: Protein of u 28.2 59 0.0013 22.2 2.3 27 166-193 37-76 (85)
289 PF10915 DUF2709: Protein of u 27.9 1.8E+02 0.0039 23.3 5.2 44 193-247 36-79 (238)
290 PF01282 Ribosomal_S24e: Ribos 27.7 2E+02 0.0044 19.6 5.9 47 176-223 11-61 (84)
291 COG3254 Uncharacterized conser 27.5 2E+02 0.0043 20.6 4.8 42 88-132 27-68 (105)
292 COG5193 LHP1 La protein, small 27.3 32 0.0007 30.8 1.2 61 73-133 174-244 (438)
293 KOG4008 rRNA processing protei 27.0 54 0.0012 27.1 2.3 34 69-102 36-69 (261)
294 KOG3661 Uncharacterized conser 26.7 1.7E+02 0.0037 28.4 5.7 20 80-99 119-138 (1019)
295 KOG4407 Predicted Rho GTPase-a 26.6 19 0.0004 37.4 -0.4 9 75-83 413-421 (1973)
296 PTZ00191 60S ribosomal protein 26.3 3E+02 0.0065 21.1 6.1 55 169-226 84-139 (145)
297 COG0771 MurD UDP-N-acetylmuram 25.2 2.1E+02 0.0046 26.6 6.0 107 85-228 293-409 (448)
298 PF11411 DNA_ligase_IV: DNA li 24.6 54 0.0012 18.3 1.3 15 285-299 20-34 (36)
299 PRK13259 regulatory protein Sp 24.0 1.5E+02 0.0033 20.7 3.8 26 193-218 2-27 (94)
300 COG5193 LHP1 La protein, small 24.0 35 0.00077 30.5 0.8 62 166-227 174-244 (438)
301 PF10281 Ish1: Putative stress 23.9 59 0.0013 18.2 1.5 18 285-302 3-20 (38)
302 PHA01632 hypothetical protein 23.8 91 0.002 19.2 2.3 22 276-297 18-39 (64)
303 PF09707 Cas_Cas2CT1978: CRISP 23.7 1.9E+02 0.0041 19.9 4.1 46 74-122 26-71 (86)
304 PF13820 Nucleic_acid_bd: Puta 23.6 2.3E+02 0.0049 21.9 5.0 59 168-230 6-66 (149)
305 PF04026 SpoVG: SpoVG; InterP 22.4 1.8E+02 0.0039 19.9 3.9 26 193-218 2-27 (84)
306 PF02166 Androgen_recep: Andro 22.4 29 0.00063 30.2 0.0 7 297-303 381-387 (423)
307 PF06099 Phenol_hyd_sub: Pheno 22.1 69 0.0015 20.2 1.6 16 303-318 11-26 (59)
308 PF11061 DUF2862: Protein of u 22.1 1.7E+02 0.0036 18.9 3.3 39 280-319 10-51 (64)
309 PF13046 DUF3906: Protein of u 21.9 1.2E+02 0.0027 19.4 2.7 33 179-214 31-63 (64)
310 KOG3600 Thyroid hormone recept 20.5 2.3E+02 0.005 30.0 5.5 11 87-97 1134-1144(2238)
311 PF08549 SWI-SNF_Ssr4: Fungal 20.5 1.4E+02 0.003 29.0 4.0 16 75-90 273-288 (669)
312 PF14893 PNMA: PNMA 20.3 70 0.0015 28.3 1.9 25 71-95 16-40 (331)
313 CHL00030 rpl23 ribosomal prote 20.2 3.2E+02 0.0069 19.1 5.6 34 169-202 21-55 (93)
314 COG2004 RPS24A Ribosomal prote 20.1 3.4E+02 0.0075 19.5 6.0 48 176-223 30-80 (107)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2e-43 Score=314.17 Aligned_cols=240 Identities=27% Similarity=0.477 Sum_probs=196.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
...+|||+|||.++++++|+++|+.||+|.+|+|++|+.+|.++|||||+|.+.++|.+|++.|||..+ .++.+.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999999998 556677777
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
+.... .....++|||+|||..+++++|+++|++ ||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||
T Consensus 80 a~~~~-----~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSS-----DSIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred ecccc-----cccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 65332 2234568999999999999999999997 99999999999887889999999999999999999999999
Q ss_pred cccCC--cceEEccCCcccccchhhhhc----------cc----------------------------------------
Q 020847 232 VLCST--RPMRIGPAATKKAATGQQYQK----------AT---------------------------------------- 259 (320)
Q Consensus 232 ~~~~g--~~i~v~~a~~~~~~~~~~~~~----------~~---------------------------------------- 259 (320)
..+.| ++|.|.|+............. ..
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 99877 578899887554211100000 00
Q ss_pred ---------ccC------------CCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccE
Q 020847 260 ---------YQN------------TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRC 312 (320)
Q Consensus 260 ---------~~~------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~ 312 (320)
... ...........+.+|||+|||.++++++|+++|++||.|++++|.++ +||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 000 00000011233447999999999999999999999999999999754 799
Q ss_pred EEEEeec
Q 020847 313 GFVQFAN 319 (320)
Q Consensus 313 afV~F~~ 319 (320)
|||+|.+
T Consensus 314 aFV~F~~ 320 (352)
T TIGR01661 314 GFVSMTN 320 (352)
T ss_pred EEEEECC
Confidence 9999987
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=293.60 Aligned_cols=220 Identities=17% Similarity=0.360 Sum_probs=196.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...+.||||+||.++.|++|.-+|++.|+|.+++|+.|+.+|.+||||||.|++.+.|+.|++.||++.|. .++.|.++
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999986 56677776
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHh
Q 020847 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEM 229 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l 229 (320)
.+. .+++|||||||++.++++|++.|+++--.|++|.+..+.. .+++||||||+|.++..|..|.+.|
T Consensus 160 ~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl 228 (506)
T KOG0117|consen 160 VSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKL 228 (506)
T ss_pred Eee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhc
Confidence 654 3459999999999999999999999666799998887653 4678999999999999999999876
Q ss_pred -cC-cccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEec
Q 020847 230 -NG-VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (320)
Q Consensus 230 -~g-~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~ 307 (320)
+| ..++|+.+.|.||.++......-+.++ +.|||+||+.++|+|.|++.|+.||.|++|+.+
T Consensus 229 ~~g~~klwgn~~tVdWAep~~e~ded~ms~V----------------KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 229 MPGKIKLWGNAITVDWAEPEEEPDEDTMSKV----------------KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred cCCceeecCCcceeeccCcccCCChhhhhhe----------------eeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 33 568999999999999987765544444 889999999999999999999999999999988
Q ss_pred CCccEEEEEeecC
Q 020847 308 AGKRCGFVQFANR 320 (320)
Q Consensus 308 ~~~~~afV~F~~~ 320 (320)
++ +|||+|.+|
T Consensus 293 rD--YaFVHf~eR 303 (506)
T KOG0117|consen 293 RD--YAFVHFAER 303 (506)
T ss_pred cc--eeEEeecch
Confidence 65 999999986
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=6e-41 Score=314.76 Aligned_cols=222 Identities=31% Similarity=0.552 Sum_probs=195.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCC
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY 154 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~ 154 (320)
+|||+|||.++||++|+++|+.||.|.+|++++|..+++++|||||+|.+.++|++|++.+++..+ .++.+++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 699999999999999999999999999999999998999999999999999999999999999988 667889988764
Q ss_pred CCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 020847 155 GAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (320)
Q Consensus 155 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 234 (320)
....+ .....+|||+||+.++++++|+++|++ ||.|.+|++.++ .+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 223568999999999999999999997 999999999998 4788999999999999999999999999999
Q ss_pred CCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC-----
Q 020847 235 STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----- 309 (320)
Q Consensus 235 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~----- 309 (320)
.|+.|.|.....+.... .......++|||+||+.++++++|+++|+.||.|+++.+.++
T Consensus 155 ~~~~i~v~~~~~~~~~~----------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~ 218 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE----------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRS 218 (562)
T ss_pred cCceEEEeccccccccc----------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 99999998766553332 012234578999999999999999999999999999998653
Q ss_pred ccEEEEEeec
Q 020847 310 KRCGFVQFAN 319 (320)
Q Consensus 310 ~~~afV~F~~ 319 (320)
+|||||+|++
T Consensus 219 ~G~afV~F~~ 228 (562)
T TIGR01628 219 RGFAFVNFEK 228 (562)
T ss_pred ccEEEEEECC
Confidence 6899999987
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.9e-39 Score=295.40 Aligned_cols=218 Identities=15% Similarity=0.315 Sum_probs=182.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.+++|++|+++|+.||.|.+++|++| .+|.++|||||+|.+.++|++|++.||+..+.. ++.+.+.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~-Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRP-GRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecC-Ccccccc
Confidence 45689999999999999999999999999999999999 899999999999999999999999999988742 3344444
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCC-CeeEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVT-DRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
++. ..++|||+|||.++++++|.++|++ ++ .+.++.+.. +...++++|||||+|.+.++|.+|++.
T Consensus 134 ~S~-----------~~~rLFVgNLP~~~TeeeL~eeFsk-v~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 134 ISV-----------DNCRLFVGGIPKNKKREEILEEFSK-VTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred ccc-----------cCceeEeecCCcchhhHHHHHHhhc-ccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHH
Confidence 432 2469999999999999999999998 65 455554433 233567899999999999999999998
Q ss_pred hcC--cccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccC--CCEEEE
Q 020847 229 MNG--VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY--GELVHV 304 (320)
Q Consensus 229 l~g--~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~--G~i~~v 304 (320)
|+. ..++|+.|.|.|+.++..... ......++|||+||+.++++++|+++|+.| |.|++|
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d~----------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV 265 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVDE----------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV 265 (578)
T ss_pred hhccceEecCceEEEEeecccccccc----------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 864 468999999999987654321 112234789999999999999999999999 999999
Q ss_pred EecCCccEEEEEeecC
Q 020847 305 KIPAGKRCGFVQFANR 320 (320)
Q Consensus 305 ~i~~~~~~afV~F~~~ 320 (320)
++.+ +||||+|+++
T Consensus 266 ~~~r--gfAFVeF~s~ 279 (578)
T TIGR01648 266 KKIR--DYAFVHFEDR 279 (578)
T ss_pred Eeec--CeEEEEeCCH
Confidence 8764 6999999873
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-39 Score=304.33 Aligned_cols=240 Identities=23% Similarity=0.438 Sum_probs=196.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
...+|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.+||..+.+ +.+.+..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~--~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND--KEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecC--ceEEEec
Confidence 4567999999999999999999999999999999988 478899999999999999999999999998844 4455543
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
...............++|||+||+.++++++|+++|++ ||.|.++.+.++. +|.++|||||+|.+.++|.+|++.|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 33221111223344578999999999999999999997 9999999999984 788999999999999999999999999
Q ss_pred cccC----CcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEec
Q 020847 232 VLCS----TRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (320)
Q Consensus 232 ~~~~----g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~ 307 (320)
..+. |+.|.|.++..+............. ...........++|||+||+..+++++|+++|+.||.|++++|.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~---~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEE---LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHh---hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 9999 9999999988765543221111000 00111223456789999999999999999999999999999986
Q ss_pred CC-----ccEEEEEeec
Q 020847 308 AG-----KRCGFVQFAN 319 (320)
Q Consensus 308 ~~-----~~~afV~F~~ 319 (320)
++ +|+|||+|++
T Consensus 319 ~d~~g~~~g~gfV~f~~ 335 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSN 335 (562)
T ss_pred ECCCCCcCCeEEEEeCC
Confidence 53 6999999987
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3e-39 Score=271.97 Aligned_cols=184 Identities=20% Similarity=0.401 Sum_probs=164.2
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCC-CCCC
Q 020847 64 VAPDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT-QMPS 142 (320)
Q Consensus 64 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~-~~~~ 142 (320)
..+...+.+.-++|||.||..++|+||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+|+.. .++|
T Consensus 25 ~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 25 DHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred CCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 345566677889999999999999999999999999999999999999999999999999999999999999875 5899
Q ss_pred CCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 020847 143 TEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 222 (320)
..+++.+.+++.... ....+++||||-|++.+||.||+++|++ ||.|++|.|++| ..+.+||||||.|.+++.|
T Consensus 105 ~~~pvqvk~Ad~E~e----r~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A 178 (510)
T KOG0144|consen 105 MHHPVQVKYADGERE----RIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRD-PDGLSRGCAFVKFSTKEMA 178 (510)
T ss_pred CCcceeecccchhhh----ccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheec-ccccccceeEEEEehHHHH
Confidence 999999999875432 2245679999999999999999999998 999999999999 4799999999999999999
Q ss_pred HHHHHHhcCcc-c--CCcceEEccCCcccccchh
Q 020847 223 LRSMTEMNGVL-C--STRPMRIGPAATKKAATGQ 253 (320)
Q Consensus 223 ~~A~~~l~g~~-~--~g~~i~v~~a~~~~~~~~~ 253 (320)
..||++|||.. + ...+|.|+||++++.+..+
T Consensus 179 ~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 179 VAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999999954 4 4568999999998766543
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=251.38 Aligned_cols=243 Identities=27% Similarity=0.463 Sum_probs=205.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.++....|.|.-||..+|++||+.+|...|+|++|++++|+-+|.+-||+||.|.++++|++|+..|||..+ ..+.|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 355667799999999999999999999999999999999999999999999999999999999999999999 778899
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.+++.+. +......|||++||+.+|..||..+|++ ||.|...+|+.|..+|.+||.+||.|+.+.+|+.|+..
T Consensus 115 VSyARPSs-----~~Ik~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSS-----DSIKDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCCh-----hhhcccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 99988653 3344568999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hcCcccCCc--ceEEccCCcccccchhhhh--------------------cc----------cccCC------------C
Q 020847 229 MNGVLCSTR--PMRIGPAATKKAATGQQYQ--------------------KA----------TYQNT------------Q 264 (320)
Q Consensus 229 l~g~~~~g~--~i~v~~a~~~~~~~~~~~~--------------------~~----------~~~~~------------~ 264 (320)
|||..-.|. +|.|.|+............ +. ...+. .
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAG 268 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeee
Confidence 999886554 8999999877544432100 00 00000 0
Q ss_pred CCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeec
Q 020847 265 GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (320)
Q Consensus 265 ~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~ 319 (320)
...........+|||-||.++..+.-|..+|++||-|.+|+|.|+ +|||||.+.|
T Consensus 269 ~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtN 329 (360)
T KOG0145|consen 269 VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 329 (360)
T ss_pred eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecc
Confidence 011123345688999999999999999999999999999999876 7999999876
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-39 Score=257.14 Aligned_cols=209 Identities=30% Similarity=0.607 Sum_probs=178.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.+++.++||||||+.++||+-|..||.+.|+|.+|+++.+ .+.
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~ 44 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELK 44 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhc
Confidence 3567899999999999999999999999999999999976 234
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.|+......+.........+||+.|...++-++|++.|.+ ||+|.+++|++|..|+++|||+||.|-+.++|+.||..
T Consensus 45 v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 45 VNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred cccccCcccCCCCccccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 44544443334444444678999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC
Q 020847 229 MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~ 308 (320)
|||.-|++|.|+..||..+........ ...........+..++|||+||+.-+++++|++.|++||.|.+|++.+
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~~~-----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk 198 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNGKP-----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK 198 (321)
T ss_pred hCCeeeccceeeccccccCccccCCCC-----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec
Confidence 999999999999999998873322211 111223345667789999999999999999999999999999999999
Q ss_pred CccEEEEEeecC
Q 020847 309 GKRCGFVQFANR 320 (320)
Q Consensus 309 ~~~~afV~F~~~ 320 (320)
++|++||.|++|
T Consensus 199 ~qGYaFVrF~tk 210 (321)
T KOG0148|consen 199 DQGYAFVRFETK 210 (321)
T ss_pred ccceEEEEecch
Confidence 999999999986
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-37 Score=281.28 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=182.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHh--cCCCCCCCCcceEee
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF--NGTQMPSTEQNFRLN 150 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l--~g~~~~~~~~~~~~~ 150 (320)
+++|||+|||.++++++|+++|+.||.|.+|.++++ ++||||+|.+.++|.+|+..+ ++..+ .++.+.+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v~ 73 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYI--RGQPAFFN 73 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEEE
Confidence 578999999999999999999999999999999864 689999999999999999875 55566 67788888
Q ss_pred ccCCCCCCCCC-------CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 020847 151 WATYGAGERRQ-------DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQL 223 (320)
Q Consensus 151 ~~~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 223 (320)
|+......+.. ......+|+|+||+..+++++|+++|++ ||.|.+|.+.++. .+++|||+|.+.++|.
T Consensus 74 ~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 74 YSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKN----NVFQALVEFESVNSAQ 148 (481)
T ss_pred ecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecC----CceEEEEEECCHHHHH
Confidence 87543211111 1112247899999999999999999997 9999999988763 2468999999999999
Q ss_pred HHHHHhcCcccCC--cceEEccCCcccccchhhhhcc----------------------cccC-----------------
Q 020847 224 RSMTEMNGVLCST--RPMRIGPAATKKAATGQQYQKA----------------------TYQN----------------- 262 (320)
Q Consensus 224 ~A~~~l~g~~~~g--~~i~v~~a~~~~~~~~~~~~~~----------------------~~~~----------------- 262 (320)
+|++.|||..+.| +.|+|.|++........+..+. ....
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999999964 5899999886432110000000 0000
Q ss_pred ------------CC-------C------------C----CCCCCCCccEEEEcCCCC-cCCHHHHHHHhccCCCEEEEEe
Q 020847 263 ------------TQ-------G------------S----QGENDPNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVKI 306 (320)
Q Consensus 263 ------------~~-------~------------~----~~~~~~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~i~~v~i 306 (320)
.. . . ......++++|||+||+. .+++++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 00 0 0 001134678999999998 6999999999999999999999
Q ss_pred cCC-ccEEEEEeec
Q 020847 307 PAG-KRCGFVQFAN 319 (320)
Q Consensus 307 ~~~-~~~afV~F~~ 319 (320)
+++ +|+|||+|.+
T Consensus 309 ~~~~~g~afV~f~~ 322 (481)
T TIGR01649 309 MKNKKETALIEMAD 322 (481)
T ss_pred EeCCCCEEEEEECC
Confidence 876 6899999986
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=9.5e-37 Score=280.23 Aligned_cols=246 Identities=20% Similarity=0.362 Sum_probs=192.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||..+++++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|+ .|+|..+.| ..+.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g--~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLG--RPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECC--eeeEE
Confidence 456789999999999999999999999999999999999999999999999999999999999 589999854 44555
Q ss_pred eccCCCCC-------CCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 020847 150 NWATYGAG-------ERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222 (320)
Q Consensus 150 ~~~~~~~~-------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 222 (320)
.++..... .........++|||+|||..+++++|+++|++ ||.|..|.++.+..+|.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 44322111 01111233689999999999999999999997 99999999999988889999999999999999
Q ss_pred HHHHHHhcCcccCCcceEEccCCcccccchhh------------------------hhcccccC----------------
Q 020847 223 LRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ------------------------YQKATYQN---------------- 262 (320)
Q Consensus 223 ~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~------------------------~~~~~~~~---------------- 262 (320)
.+|+..|||..+.|+.|.|.|+.......... ........
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 99999999999999999999976321110000 00000000
Q ss_pred ----------------------------C-CCCCCCCCCCccEEEEcCCCCcCC----------HHHHHHHhccCCCEEE
Q 020847 263 ----------------------------T-QGSQGENDPNNTTIFVGGLDPSVT----------DDILKTVFGQYGELVH 303 (320)
Q Consensus 263 ----------------------------~-~~~~~~~~~~~~~l~v~nl~~~~~----------~~~L~~~f~~~G~i~~ 303 (320)
. ...........++|+|.||-...+ .+||++.|+.||.|+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 0 000001235678899999954433 3789999999999999
Q ss_pred EEec--CCccEEEEEeec
Q 020847 304 VKIP--AGKRCGFVQFAN 319 (320)
Q Consensus 304 v~i~--~~~~~afV~F~~ 319 (320)
|.|. ...|++||+|.+
T Consensus 402 v~v~~~~~~G~~fV~F~~ 419 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSS 419 (457)
T ss_pred EEEeCCCCceeEEEEECC
Confidence 9986 347999999986
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.5e-37 Score=266.48 Aligned_cols=242 Identities=20% Similarity=0.334 Sum_probs=194.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
.||||++||++++.++|.++|+.+|+|..|.++.+..++.++||+||.|.-.++++.|+..+++..+.| +.+++..+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G--r~l~v~~A~ 83 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG--RILNVDPAK 83 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc--eeccccccc
Confidence 799999999999999999999999999999999998888999999999999999999999999999954 445554443
Q ss_pred CCCCCC---------------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEE
Q 020847 154 YGAGER---------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYG 212 (320)
Q Consensus 154 ~~~~~~---------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~a 212 (320)
...... .....+.-+|+|+|||+.+.+.+|..+|+. ||.|.+|.|++...++.| |||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklc-GFa 161 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLC-GFA 161 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCcc-ceE
Confidence 222111 001223568999999999999999999998 999999999988655555 999
Q ss_pred EEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhh---------------hhc--------------------
Q 020847 213 FVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ---------------YQK-------------------- 257 (320)
Q Consensus 213 fV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~---------------~~~-------------------- 257 (320)
||.|.+..+|..|++.+||..|+||+|-|.||..+....... ...
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ed 241 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSED 241 (678)
T ss_pred EEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccc
Confidence 999999999999999999999999999999999875443210 000
Q ss_pred cc--c----------------cCCCCC----------------CCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEE
Q 020847 258 AT--Y----------------QNTQGS----------------QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303 (320)
Q Consensus 258 ~~--~----------------~~~~~~----------------~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~ 303 (320)
.. . ...... ..++.....+|||+|||+++|+++|+.+|+.||+|.+
T Consensus 242 eEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~y 321 (678)
T KOG0127|consen 242 EEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKY 321 (678)
T ss_pred cccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcccee
Confidence 00 0 000000 0122234589999999999999999999999999999
Q ss_pred EEecC------CccEEEEEeec
Q 020847 304 VKIPA------GKRCGFVQFAN 319 (320)
Q Consensus 304 v~i~~------~~~~afV~F~~ 319 (320)
+.|.. ++|+|||.|.+
T Consensus 322 a~iV~~k~T~~skGtAFv~Fkt 343 (678)
T KOG0127|consen 322 AIIVKDKDTGHSKGTAFVKFKT 343 (678)
T ss_pred EEEEeccCCCCcccceEEEecc
Confidence 98853 47999999986
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3e-36 Score=276.39 Aligned_cols=238 Identities=18% Similarity=0.298 Sum_probs=186.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
...+|||+||++.+|+++|+++|+.||.|.+|.+.++. .+++|||+|.+.++|.+|++.|||..+.++...+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 34579999999999999999999999999999998763 24799999999999999999999999987666666666
Q ss_pred cCCCCC-------------------CC-----------------------------------------------------
Q 020847 152 ATYGAG-------------------ER----------------------------------------------------- 159 (320)
Q Consensus 152 ~~~~~~-------------------~~----------------------------------------------------- 159 (320)
+..... ..
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 542110 00
Q ss_pred ------------------CCCCCCCceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 020847 160 ------------------RQDDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220 (320)
Q Consensus 160 ------------------~~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~ 220 (320)
.....++++|||+||+. .+++++|+++|+. ||.|.+|+++++. +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~-yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCV-YGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 00012457999999998 6999999999997 9999999999873 789999999999
Q ss_pred HHHHHHHHhcCcccCCcceEEccCCcccccchhhhh---c----ccc-----cCCC----CCCCCCCCCccEEEEcCCCC
Q 020847 221 EQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQ---K----ATY-----QNTQ----GSQGENDPNNTTIFVGGLDP 284 (320)
Q Consensus 221 ~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~---~----~~~-----~~~~----~~~~~~~~~~~~l~v~nl~~ 284 (320)
+|.+|+..|||..+.|+.|+|.+++........... . ... .+.. ........++.+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 999999999999999999999998765322111000 0 000 0000 00011235678999999999
Q ss_pred cCCHHHHHHHhccCCC--EEEEEecCC----ccEEEEEeec
Q 020847 285 SVTDDILKTVFGQYGE--LVHVKIPAG----KRCGFVQFAN 319 (320)
Q Consensus 285 ~~~~~~L~~~f~~~G~--i~~v~i~~~----~~~afV~F~~ 319 (320)
++++++|+++|+.||. |+.+++... +++|||+|.+
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~ 445 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWES 445 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCC
Confidence 9999999999999998 888988543 5899999987
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.1e-35 Score=275.01 Aligned_cols=243 Identities=17% Similarity=0.286 Sum_probs=182.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccc------------CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHH
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHT------------GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~------------G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 134 (320)
.......++|||||||+++|+++|+++|..+ +.|..+.+. ..+|||||+|.+.++|..|| .
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al-~ 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAM-A 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhh-c
Confidence 3456677999999999999999999999875 234444432 35899999999999999999 6
Q ss_pred hcCCCCCCCCcceEeeccCCCCC---------C---------------CCCCCCCCceEEecCCCCCCCHHHHHHHHHhh
Q 020847 135 FNGTQMPSTEQNFRLNWATYGAG---------E---------------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAV 190 (320)
Q Consensus 135 l~g~~~~~~~~~~~~~~~~~~~~---------~---------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~ 190 (320)
|+|..+.| ..+.+.+...... . ........++|||+|||..+++++|+++|+.
T Consensus 242 l~g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~- 318 (509)
T TIGR01642 242 LDSIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES- 318 (509)
T ss_pred CCCeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-
Confidence 99999855 5555543221100 0 0001234579999999999999999999997
Q ss_pred CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhhc----ccc---cCC
Q 020847 191 YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK----ATY---QNT 263 (320)
Q Consensus 191 ~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~----~~~---~~~ 263 (320)
||.|..+.++++..+|.++|||||+|.+.++|..|+..|||..++|+.|.|.++............. ... ...
T Consensus 319 ~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
T TIGR01642 319 FGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALS 398 (509)
T ss_pred cCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccch
Confidence 9999999999998899999999999999999999999999999999999999987543322110000 000 000
Q ss_pred CCCCCCCCCCccEEEEcCCCCc--C--------CHHHHHHHhccCCCEEEEEecCC---------ccEEEEEeec
Q 020847 264 QGSQGENDPNNTTIFVGGLDPS--V--------TDDILKTVFGQYGELVHVKIPAG---------KRCGFVQFAN 319 (320)
Q Consensus 264 ~~~~~~~~~~~~~l~v~nl~~~--~--------~~~~L~~~f~~~G~i~~v~i~~~---------~~~afV~F~~ 319 (320)
.........++.+|+|.|+... + ..++|+++|+.||.|++|.|++. .|+|||+|++
T Consensus 399 ~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~ 473 (509)
T TIGR01642 399 QSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYAD 473 (509)
T ss_pred hhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECC
Confidence 0001122346789999999642 1 23689999999999999999753 4899999986
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-35 Score=270.96 Aligned_cols=174 Identities=19% Similarity=0.340 Sum_probs=153.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+||++++++++|+++|+.||.|.+|+++.|+.+|.++|||||+|.+.++|.+|++.|||..+. ++.+++.+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~r 183 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVGR 183 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeecc
Confidence 4588999999999999999999999999999999999999999999999999999999999999999994 45555554
Q ss_pred cCCCCCCC------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 020847 152 ATYGAGER------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (320)
Q Consensus 152 ~~~~~~~~------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 225 (320)
........ .......++|||+||+.++++++|+++|+. ||.|.+++|.+|+.+|+++|||||+|.+.++|.+|
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 33221110 112234579999999999999999999997 99999999999988899999999999999999999
Q ss_pred HHHhcCcccCCcceEEccCCccc
Q 020847 226 MTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 226 ~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
++.|||..++|+.|+|.++..+.
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999988643
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.6e-35 Score=254.49 Aligned_cols=174 Identities=24% Similarity=0.480 Sum_probs=155.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||+|.+|+|+.|..++.++|||||+|.++++|++|++.|+|..+ ..+.|+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i~ 180 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRLK 180 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCceee
Confidence 345678999999999999999999999999999999999999999999999999999999999999999999 556777
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.++.... .....++|||+|||.++++++|+++|++ ||.|+.+.|++|+.+++++|||||+|.+.++|.+|++.
T Consensus 181 V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 254 (346)
T TIGR01659 181 VSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA 254 (346)
T ss_pred eecccccc-----cccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 77765432 1223568999999999999999999997 99999999999988999999999999999999999999
Q ss_pred hcCcccCC--cceEEccCCccccc
Q 020847 229 MNGVLCST--RPMRIGPAATKKAA 250 (320)
Q Consensus 229 l~g~~~~g--~~i~v~~a~~~~~~ 250 (320)
||+..+.+ ++|+|.+++.....
T Consensus 255 lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 255 LNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred hCCCccCCCceeEEEEECCccccc
Confidence 99998865 68999999865443
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.3e-32 Score=243.14 Aligned_cols=177 Identities=27% Similarity=0.500 Sum_probs=156.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|++.|||..+.+....+.+.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998888899999999999999999999999999988778888877
Q ss_pred cCCCCCCC-----------------C------------------------------------------------------
Q 020847 152 ATYGAGER-----------------R------------------------------------------------------ 160 (320)
Q Consensus 152 ~~~~~~~~-----------------~------------------------------------------------------ 160 (320)
+....... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 64322000 0
Q ss_pred ----------------CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 020847 161 ----------------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 161 ----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
.......+|||+|||.++++++|+++|++ ||.|.+++|++|..+|.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 00111236999999999999999999998 9999999999998899999999999999999999
Q ss_pred HHHHhcCcccCCcceEEccCCcccc
Q 020847 225 SMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 225 A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
|+..|||..++||.|+|.|+..+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999987753
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-32 Score=217.35 Aligned_cols=170 Identities=28% Similarity=0.531 Sum_probs=156.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.--|||+.|...++-++|++.|..||.|.++++++|.+++++|||+||.|.+.++|++||..+||.-| +++.|+-+|+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTNWA 139 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTNWA 139 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecccc
Confidence 45599999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred CCCCCCCC-----------CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Q 020847 153 TYGAGERR-----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESE 221 (320)
Q Consensus 153 ~~~~~~~~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 221 (320)
........ .....+++|||||++..++|++|++.|++ ||.|.+|++.++ +|||||.|.+.|.
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~------qGYaFVrF~tkEa 212 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKD------QGYAFVRFETKEA 212 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecc------cceEEEEecchhh
Confidence 87764322 23566899999999999999999999998 999999999988 7899999999999
Q ss_pred HHHHHHHhcCcccCCcceEEccCCcccccc
Q 020847 222 QLRSMTEMNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 222 A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
|.+||..+||.++.|..++..|.+......
T Consensus 213 AahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 213 AAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999999998765443
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-31 Score=233.28 Aligned_cols=211 Identities=30% Similarity=0.545 Sum_probs=188.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
..|||| +++|+..|.++|+.+|+|.++++++|. + +-|||||.|.++++|++|++++|...+ .++.+++.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 358999 999999999999999999999999996 5 999999999999999999999999999 88899999987
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 154 YGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
..... |||.||+++++..+|.++|+. ||.|.+|++.++. .| ++|| ||+|++.+.|.+|+..|||..
T Consensus 74 rd~~~----------~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPSL----------VFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCce----------eeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 54322 999999999999999999997 9999999999995 45 8999 999999999999999999999
Q ss_pred cCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC----
Q 020847 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (320)
Q Consensus 234 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~---- 309 (320)
+.|+.|.|.....+..+..... . .....+.++|.|++.+++++.|+++|..+|.|.++.++++
T Consensus 140 l~~kki~vg~~~~~~er~~~~~------------~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~ 206 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLG------------E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGK 206 (369)
T ss_pred cCCCeeEEeeccchhhhccccc------------c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCC
Confidence 9999999998887766543211 1 2334578999999999999999999999999999999763
Q ss_pred -ccEEEEEeec
Q 020847 310 -KRCGFVQFAN 319 (320)
Q Consensus 310 -~~~afV~F~~ 319 (320)
++||||.|++
T Consensus 207 ~~~~gfv~f~~ 217 (369)
T KOG0123|consen 207 SKGFGFVNFEN 217 (369)
T ss_pred CCCccceeecC
Confidence 7999999986
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2e-30 Score=236.50 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=175.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEEec-CCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRN-KQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~-~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..++|||+|||.++++++|.+.|+.++. +.++.+... ...+.++|||||+|.+.++|..|++.|+...+...++.+.+
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4688999999999999999999999864 445444332 23457899999999999999999998876544336778899
Q ss_pred eccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhC--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVY--SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~--g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
.|+..............++|||+||+.++++++|+++|++ | |.|++|.++ ++||||+|.+.++|.+|++
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKI--------RDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEee--------cCeEEEEeCCHHHHHHHHH
Confidence 9987654433333445679999999999999999999997 9 999999775 4599999999999999999
Q ss_pred HhcCcccCCcceEEccCCcccccchhhh-------hcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCC
Q 020847 228 EMNGVLCSTRPMRIGPAATKKAATGQQY-------QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300 (320)
Q Consensus 228 ~l~g~~~~g~~i~v~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~ 300 (320)
.|||..|+|+.|+|.|+++......... ................+...++++.|++++.+++-+.++|...|.
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 9999999999999999988654311100 000111112233345567899999999999999999999999998
Q ss_pred EEE
Q 020847 301 LVH 303 (320)
Q Consensus 301 i~~ 303 (320)
|..
T Consensus 368 ~~~ 370 (578)
T TIGR01648 368 IRG 370 (578)
T ss_pred ccC
Confidence 764
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.5e-30 Score=222.60 Aligned_cols=236 Identities=24% Similarity=0.458 Sum_probs=192.1
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCC
Q 020847 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYG 155 (320)
Q Consensus 76 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~ 155 (320)
|||.||+++++.++|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|.+|++.+||..+.+..+.+.+......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999995 45 8999 9999999999999999999999766666655444322
Q ss_pred CCCCCC-CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 020847 156 AGERRQ-DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (320)
Q Consensus 156 ~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 234 (320)
...... ....-..+++.|++.+++++.|.++|.. +|.|..+.++.+. .|.+++|+||.|.+.++|..|+..|++..+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 221111 2333467899999999999999999997 9999999999984 677999999999999999999999999999
Q ss_pred CCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC-----C
Q 020847 235 STRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-----G 309 (320)
Q Consensus 235 ~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~-----~ 309 (320)
++..+.|..+..+......-... -...............|||.|++..++++.|++.|+.||+|++++|+. .
T Consensus 234 ~~~~~~V~~aqkk~e~~~~l~~~---~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~s 310 (369)
T KOG0123|consen 234 GDKELYVGRAQKKSEREAELKRK---FEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKS 310 (369)
T ss_pred CccceeecccccchhhHHHHhhh---hHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCc
Confidence 99999999988743332210000 000111112344668899999999999999999999999999999864 4
Q ss_pred ccEEEEEeec
Q 020847 310 KRCGFVQFAN 319 (320)
Q Consensus 310 ~~~afV~F~~ 319 (320)
+|+|||+|.+
T Consensus 311 kG~gfV~fs~ 320 (369)
T KOG0123|consen 311 KGFGFVEFSS 320 (369)
T ss_pred cceEEEEcCC
Confidence 8999999986
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3.2e-29 Score=218.02 Aligned_cols=138 Identities=30% Similarity=0.577 Sum_probs=124.1
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||+++++++|+++|+. ||.|++|+|++|..+++++|||||+|.+.++|.+|++.|||..+.+++|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 34456789999999999999999999997 99999999999988999999999999999999999999999999999999
Q ss_pred EccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEE
Q 020847 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGF 314 (320)
Q Consensus 241 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~af 314 (320)
|.|+++.... ...++|||.|||..+++++|+++|+.||.|++++|.++ +++||
T Consensus 181 V~~a~p~~~~---------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aF 239 (346)
T TIGR01659 181 VSYARPGGES---------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAF 239 (346)
T ss_pred eecccccccc---------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEE
Confidence 9998764211 12467999999999999999999999999999998765 48999
Q ss_pred EEeecC
Q 020847 315 VQFANR 320 (320)
Q Consensus 315 V~F~~~ 320 (320)
|+|+++
T Consensus 240 V~F~~~ 245 (346)
T TIGR01659 240 VRFNKR 245 (346)
T ss_pred EEECCH
Confidence 999863
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=195.28 Aligned_cols=179 Identities=24% Similarity=0.441 Sum_probs=158.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
+..-....|||++||.++|..||+.+|+.||.|...+|+.|.-+|.+||.+||.|...++|+.|+..|||..-.|...+|
T Consensus 122 s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepI 201 (360)
T KOG0145|consen 122 SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPI 201 (360)
T ss_pred hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCe
Confidence 33444577999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EeeccCCCCCCCC----------------------------------------------------------CCCCCCceE
Q 020847 148 RLNWATYGAGERR----------------------------------------------------------QDDGPDFTI 169 (320)
Q Consensus 148 ~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~~l 169 (320)
.+.++........ ......-+|
T Consensus 202 tVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ci 281 (360)
T KOG0145|consen 202 TVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCI 281 (360)
T ss_pred EEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEE
Confidence 9888763211000 001224689
Q ss_pred EecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 170 FVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 170 ~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
||.||..+++|.-|+.+|.+ ||.|..|++++|..+++||||+||.+.+.++|..|+..|||..+++|.|.|.|...+
T Consensus 282 FvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 282 FVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred EEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999998 999999999999999999999999999999999999999999999999999997655
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=7.8e-29 Score=186.39 Aligned_cols=175 Identities=25% Similarity=0.463 Sum_probs=155.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.....+||||||+..++++-|.++|-+.|+|.++++.+|..+...+||||++|.++++|+-|++.||...+ .+++|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 34568999999999999999999999999999999999998988999999999999999999999997777 6778888
Q ss_pred eccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 150 NWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
..+... ......+..|||+||.+.++|.-|.+.|+. ||.+.. -.++++..+|.++|||||.|.+.+.+.+|+..
T Consensus 84 ~kas~~----~~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKASAH----QKNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eecccc----cccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 776621 122233479999999999999999999997 999765 37888888999999999999999999999999
Q ss_pred hcCcccCCcceEEccCCcccccc
Q 020847 229 MNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
+||..+.+++|.|.++..+....
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99999999999999998776554
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.3e-28 Score=200.31 Aligned_cols=173 Identities=19% Similarity=0.340 Sum_probs=151.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
--|+||||.|.+.+.|+.|+..|..||+|.++.+..|+.++..+|||||+|+-+|.|..|++.+||..+ +++++++..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml--GGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML--GGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc--cCccccccC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999 556666654
Q ss_pred cCCCCCCCC------CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 020847 152 ATYGAGERR------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (320)
Q Consensus 152 ~~~~~~~~~------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 225 (320)
...-..... .+...-++|||..+..+.+++||+..|+. ||.|..|.+.+++..+..|||+|++|.+..+-..|
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eA 268 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 268 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccchHHH
Confidence 332111100 01123468999999999999999999997 99999999999998899999999999999999999
Q ss_pred HHHhcCcccCCcceEEccCCcc
Q 020847 226 MTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 226 ~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
+..||-..++|..|+|..+...
T Consensus 269 iasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 269 IASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhhcchhhcccceEecccccCC
Confidence 9999999999999999877654
No 25
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=8.8e-28 Score=203.88 Aligned_cols=172 Identities=20% Similarity=0.311 Sum_probs=152.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEEecCCC-CCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQT-NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~-~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..+|+|||||||.+.++++|.+-|++.++ |.+|.+..++.+ .++||||||+|++...|..|.+.|-...|.-.+..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 45789999999999999999999999985 888888887544 5789999999999999999999988777777889999
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.|+.............-..|||+||+.++|+|.|+++|+. ||.|+.|+.++| ||||+|.++++|.+||+.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 99999776554444455678999999999999999999997 999999988866 999999999999999999
Q ss_pred hcCcccCCcceEEccCCcccccc
Q 020847 229 MNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
+||++|+|..|.|..|++..+..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred hcCceecCceEEEEecCChhhhc
Confidence 99999999999999999876554
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.7e-27 Score=204.57 Aligned_cols=243 Identities=24% Similarity=0.382 Sum_probs=185.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.-+|.|+|||+.+...+|+.+|+.||.|..+.|.+.. .|..+|||||.|....+|..|+..+||..| .+++|.+.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5679999999999999999999999999999999764 566679999999999999999999999999 6778888876
Q ss_pred CCCCC-------------------------------------------CC------------------------------
Q 020847 153 TYGAG-------------------------------------------ER------------------------------ 159 (320)
Q Consensus 153 ~~~~~-------------------------------------------~~------------------------------ 159 (320)
-.... ..
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 51100 00
Q ss_pred ------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 160 ------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 160 ------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
+.+.....+|||+|||+++|+++|.+.|+. ||.|..+.|+.++.|+.++|+|||.|.+..+|..||.
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000111379999999999999999999997 9999999999999999999999999999999999998
Q ss_pred Hh-----cC-cccCCcceEEccCCcccccchhhhhcccc-------------------c---------------------
Q 020847 228 EM-----NG-VLCSTRPMRIGPAATKKAATGQQYQKATY-------------------Q--------------------- 261 (320)
Q Consensus 228 ~l-----~g-~~~~g~~i~v~~a~~~~~~~~~~~~~~~~-------------------~--------------------- 261 (320)
+. .| ..+.||.|+|..+..+......+...... .
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 76 34 67899999999998876544321110000 0
Q ss_pred CCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhcc----C-CCEEE-EEecC---------CccEEEEEeec
Q 020847 262 NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ----Y-GELVH-VKIPA---------GKRCGFVQFAN 319 (320)
Q Consensus 262 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~----~-G~i~~-v~i~~---------~~~~afV~F~~ 319 (320)
.....+.......+.|.|+|||..++...|..+... | +.+.. ++.++ +.|++||.|..
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~E 505 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTE 505 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccH
Confidence 000112222344577999999999999888776643 3 33332 22221 26899998863
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3e-27 Score=216.01 Aligned_cols=144 Identities=22% Similarity=0.481 Sum_probs=121.8
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+||++++++++|+++|++ ||.|.+|.++.|+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~-fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHc-cCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 458999999999999999999998 9999999999999999999999999999999999999999999999999998654
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC------CccEEEEEeec
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFAN 319 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~------~~~~afV~F~~ 319 (320)
........ ...........++|||+||+.++++++|+++|+.||.|++++|.+ .+|||||+|.+
T Consensus 186 ~~p~a~~~----------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 186 NMPQAQPI----------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cccccccc----------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 33211100 000111223457899999999999999999999999999999965 37899999987
Q ss_pred C
Q 020847 320 R 320 (320)
Q Consensus 320 ~ 320 (320)
+
T Consensus 256 ~ 256 (612)
T TIGR01645 256 L 256 (612)
T ss_pred H
Confidence 3
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=5.6e-26 Score=211.74 Aligned_cols=175 Identities=18% Similarity=0.328 Sum_probs=145.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..+. +..|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v 369 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHV 369 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999999994 445666
Q ss_pred eccCCCCCCC-----------------------CCCCCCCceEEecCCCCC--C--------CHHHHHHHHHhhCCCeeE
Q 020847 150 NWATYGAGER-----------------------RQDDGPDFTIFVGDLAAD--V--------TDYVLQETFRAVYSSVKG 196 (320)
Q Consensus 150 ~~~~~~~~~~-----------------------~~~~~~~~~l~v~nl~~~--~--------t~~~l~~~f~~~~g~i~~ 196 (320)
.++....... .....++.+|+|.||... + ..++|+++|++ ||.|+.
T Consensus 370 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~ 448 (509)
T TIGR01642 370 QRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLIN 448 (509)
T ss_pred EECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeE
Confidence 5554221110 001235678999999642 1 23689999997 999999
Q ss_pred EEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 197 AKVVTDR---TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 197 v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
|.|+++. .++...|+|||+|.+.++|.+|+..|||..|+|+.|.|.|....
T Consensus 449 v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 449 IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 9998752 33556799999999999999999999999999999999998754
No 29
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.2e-27 Score=200.56 Aligned_cols=137 Identities=24% Similarity=0.522 Sum_probs=124.2
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc---CCcce
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC---STRPM 239 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~i 239 (320)
+....+||||-+|..++|.||+++|++ ||.|.+|.|++|+.+|.++|||||.|.++++|.+|+.+|++... ...+|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~-yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEK-YGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHH-hCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 355679999999999999999999998 99999999999999999999999999999999999999998553 46689
Q ss_pred EEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC-----ccEEE
Q 020847 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGF 314 (320)
Q Consensus 240 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~-----~~~af 314 (320)
.|+|++.+..+. ...+.|||+-|+..+||.|++++|++||.|+++.|.|+ |||||
T Consensus 110 qvk~Ad~E~er~--------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaF 169 (510)
T KOG0144|consen 110 QVKYADGERERI--------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAF 169 (510)
T ss_pred eecccchhhhcc--------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeE
Confidence 999999876542 23578999999999999999999999999999999875 89999
Q ss_pred EEeecC
Q 020847 315 VQFANR 320 (320)
Q Consensus 315 V~F~~~ 320 (320)
|+|.+|
T Consensus 170 V~fstk 175 (510)
T KOG0144|consen 170 VKFSTK 175 (510)
T ss_pred EEEehH
Confidence 999876
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=5.5e-26 Score=203.32 Aligned_cols=230 Identities=19% Similarity=0.326 Sum_probs=178.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..+..+.++|+|||..+..++|...|..||.|..+.+. + . ---|+|+|.+..+|..|++.|....+ ...++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~---G~~aiv~fl~p~eAr~Afrklaysr~--k~~ply 452 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-G---GTGAIVEFLNPLEARKAFRKLAYSRF--KSAPLY 452 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-c---cceeeeeecCccchHHHHHHhchhhh--ccCccc
Confidence 44566789999999999999999999999999888554 2 1 22499999999999999999988877 333443
Q ss_pred eeccCCCCCC--------------C-------C-----------CC------------C-CCCceEEecCCCCCCCHHHH
Q 020847 149 LNWATYGAGE--------------R-------R-----------QD------------D-GPDFTIFVGDLAADVTDYVL 183 (320)
Q Consensus 149 ~~~~~~~~~~--------------~-------~-----------~~------------~-~~~~~l~v~nl~~~~t~~~l 183 (320)
+.|+....-. . + .+ . ...++|||.||+++++.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 4333311000 0 0 00 0 11234999999999999999
Q ss_pred HHHHHhhCCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhhcccc
Q 020847 184 QETFRAVYSSVKGAKVVTDRTTG---RSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATY 260 (320)
Q Consensus 184 ~~~f~~~~g~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~ 260 (320)
...|.. .|.|.++.|.+.+... .+.|||||+|.+.++|.+|++.|+|+.++|+.|.|.++..+......
T Consensus 533 ~~~F~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g------- 604 (725)
T KOG0110|consen 533 EDLFSK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG------- 604 (725)
T ss_pred HHHHHh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-------
Confidence 999997 9999999887653221 24599999999999999999999999999999999999833222111
Q ss_pred cCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeec
Q 020847 261 QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (320)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~ 319 (320)
........++.|+|+|||+..+..+++.+|..||.|.+|+|++. +|||||+|-+
T Consensus 605 -----K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 605 -----KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred -----cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 11223334789999999999999999999999999999999763 7999999976
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=8.8e-27 Score=203.09 Aligned_cols=251 Identities=16% Similarity=0.337 Sum_probs=190.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
....++.++||+--|...+++.+|.+||+..|.|.+|.++.|..++.++|.|||+|.+.+++..|+ .|.|..+.|....
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 345677899999999999999999999999999999999999999999999999999999999999 8999999544443
Q ss_pred eEeeccCCCC------CCC-CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 020847 147 FRLNWATYGA------GER-RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219 (320)
Q Consensus 147 ~~~~~~~~~~------~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 219 (320)
+....+.... ... ..-..+-..||||||..++++++|+.+|++ ||.|+.|.+.+|..+|.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEEecH
Confidence 3333222111 000 001122233999999999999999999998 99999999999988999999999999999
Q ss_pred HHHHHHHHHhcCcccCCcceEEccCCcccccchhh------------------------hhcc-----------------
Q 020847 220 SEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQ------------------------YQKA----------------- 258 (320)
Q Consensus 220 ~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~------------------------~~~~----------------- 258 (320)
++|.+|+..|||.++.|+.|+|......-...... +.+.
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 99999999999999999999997655432222110 0000
Q ss_pred -----cc---cCC--CCCCCCCC-------CCccEEEEcCC--CC-----cC---CHHHHHHHhccCCCEEEEEecCCc-
Q 020847 259 -----TY---QNT--QGSQGEND-------PNNTTIFVGGL--DP-----SV---TDDILKTVFGQYGELVHVKIPAGK- 310 (320)
Q Consensus 259 -----~~---~~~--~~~~~~~~-------~~~~~l~v~nl--~~-----~~---~~~~L~~~f~~~G~i~~v~i~~~~- 310 (320)
.. ... ........ .++.++.+.|+ |. +| -.+|+++.+++||.|..|.+.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 00 000 00011111 45667777777 11 12 238889999999999999998875
Q ss_pred cEEEEEeec
Q 020847 311 RCGFVQFAN 319 (320)
Q Consensus 311 ~~afV~F~~ 319 (320)
|+.||.|.+
T Consensus 491 g~VYvrc~s 499 (549)
T KOG0147|consen 491 GCVYVRCPS 499 (549)
T ss_pred ceEEEecCc
Confidence 999999975
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=7.3e-27 Score=188.05 Aligned_cols=148 Identities=20% Similarity=0.444 Sum_probs=132.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
-+|||||||..+++.+|+.+|+.||+|.+|.|++ .||||+.++...|+.|++.|+|..+.| ..|++..++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg--~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHG--VNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccceecc--eEEEEEecc
Confidence 4699999999999999999999999999999985 499999999999999999999999954 445554443
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 154 YGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.. +..+.+|+||||...++..||+..|.+ ||.|.++.|++| |+||+|+..++|..|++.|||++
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 22 334569999999999999999999998 999999999865 99999999999999999999999
Q ss_pred cCCcceEEccCCcc
Q 020847 234 CSTRPMRIGPAATK 247 (320)
Q Consensus 234 ~~g~~i~v~~a~~~ 247 (320)
+.|++++|..+.++
T Consensus 137 ~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSR 150 (346)
T ss_pred cccceeeeeeeccc
Confidence 99999999988765
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.6e-24 Score=197.90 Aligned_cols=144 Identities=27% Similarity=0.494 Sum_probs=122.3
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||..+++++|+++|++ ||.|.+|.+++|..+|.++|||||+|.+.++|.+||. |+|..+.|++|.|.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~-~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSK-VGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4679999999999999999999998 9999999999998899999999999999999999995 9999999999999987
Q ss_pred CcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC------CccEEEEEee
Q 020847 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFA 318 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~------~~~~afV~F~ 318 (320)
..+......... ......+..++|||+|||..+++++|+++|+.||.|..|.|.+ .+|+|||+|.
T Consensus 166 ~~~~~~~~~~~~---------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 166 QAEKNRAAKAAT---------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred chhhhhhhhccc---------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 654333211000 0011123378999999999999999999999999999999873 4689999998
Q ss_pred c
Q 020847 319 N 319 (320)
Q Consensus 319 ~ 319 (320)
+
T Consensus 237 ~ 237 (457)
T TIGR01622 237 D 237 (457)
T ss_pred C
Confidence 6
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.1e-24 Score=168.93 Aligned_cols=181 Identities=24% Similarity=0.444 Sum_probs=156.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCC-CCCCC
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTE 144 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~-~~~~~ 144 (320)
+.++..+.++||||-|.+.-.|||++.+|..||.+.+|.+++. .+|.+||||||.|.+..+|..||..|+|.. +.|..
T Consensus 12 sesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 12 SESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred cccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 3445557899999999999999999999999999999999998 588899999999999999999999999975 56666
Q ss_pred cceEeeccCCCCCC------------------------------------------------------------------
Q 020847 145 QNFRLNWATYGAGE------------------------------------------------------------------ 158 (320)
Q Consensus 145 ~~~~~~~~~~~~~~------------------------------------------------------------------ 158 (320)
..+.+.+++.....
T Consensus 91 SSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ 170 (371)
T KOG0146|consen 91 SSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALN 170 (371)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHh
Confidence 66666655400000
Q ss_pred --------------------------------------------------------------------------------
Q 020847 159 -------------------------------------------------------------------------------- 158 (320)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (320)
T Consensus 171 angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~ 250 (371)
T KOG0146|consen 171 ANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGV 250 (371)
T ss_pred hcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhH
Confidence
Q ss_pred ---------------------------CCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceE
Q 020847 159 ---------------------------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY 211 (320)
Q Consensus 159 ---------------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~ 211 (320)
......+.+.|||..||....+.||..+|-+ ||.|.+.++..|+.|+.+|-|
T Consensus 251 ~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCF 329 (371)
T KOG0146|consen 251 QQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCF 329 (371)
T ss_pred HHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccce
Confidence 0001223689999999999999999999998 999999999999999999999
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccc
Q 020847 212 GFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 212 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
+||.|++..+|..||.+|||..|+-++|+|...+++.
T Consensus 330 GFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 330 GFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred eeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999999999999888774
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=3e-23 Score=175.22 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=146.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
+.++|||++|+++++++.|+++|..||.|.+|.+.+|+.+++++||+||+|.+.+.+.+++.. .-..+ .++.+....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCcccccee
Confidence 789999999999999999999999999999999999999999999999999999999998843 22333 333444433
Q ss_pred cCCCCCCC-CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 152 ATYGAGER-RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 152 ~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
+..+.... ........+|||++|+.+++++++++.|.+ ||.|..+.++.|..+.+++||+||.|.+.+.+.+++. ..
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEeccccccceecc-cc
Confidence 33222111 111224679999999999999999999997 9999999999999999999999999999999999884 68
Q ss_pred CcccCCcceEEccCCcccccc
Q 020847 231 GVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 231 g~~~~g~~i~v~~a~~~~~~~ 251 (320)
-+.|.|+.+.|..|.++....
T Consensus 160 f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eeeecCceeeEeeccchhhcc
Confidence 899999999999999987665
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=3.1e-23 Score=185.85 Aligned_cols=177 Identities=18% Similarity=0.363 Sum_probs=148.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCC---CccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN---FSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~---~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
++|||.||++++|.++|...|..+|.|.++.|...+... .+.|||||+|.+.++|++|++.|+|+.++|..+.++++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887764221 35699999999999999999999999997666666665
Q ss_pred ccCCCC--CCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 151 WATYGA--GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 151 ~~~~~~--~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
...... +.........++|+|.|||...+..+|+.+|.. ||.+.+|+|++....+.++|||||+|-+..+|.+|+++
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 522211 111222233579999999999999999999997 99999999998755567799999999999999999999
Q ss_pred hcCcccCCcceEEccCCcccccc
Q 020847 229 MNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
|.++.+.||.|.+.|++......
T Consensus 675 l~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred hcccceechhhheehhccchHHH
Confidence 99999999999999999876643
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.87 E-value=2.7e-20 Score=158.11 Aligned_cols=173 Identities=16% Similarity=0.260 Sum_probs=138.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFG-HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
......+.+||.|||++..+.+|+++|+ +.|.|..|.++.| .+|+++|||.|+|+++|.+++|++.||.+.+.++.+.
T Consensus 39 n~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 3344566799999999999999999995 6789999999999 6899999999999999999999999999999555444
Q ss_pred eEeeccCC----------------------------C----------CCCCCC---------------------------
Q 020847 147 FRLNWATY----------------------------G----------AGERRQ--------------------------- 161 (320)
Q Consensus 147 ~~~~~~~~----------------------------~----------~~~~~~--------------------------- 161 (320)
++-..... . ....+.
T Consensus 118 vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lf 197 (608)
T KOG4212|consen 118 VKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLF 197 (608)
T ss_pred EeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcc
Confidence 43332210 0 000000
Q ss_pred -------------CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 162 -------------DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 162 -------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
..+...++||.||...+....|.+.|.- .|.|.+|.+-.|+ -|.++|+|.++|.++-.|..||..
T Consensus 198 gl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 198 GLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred cchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHh
Confidence 0122578999999999999999999996 9999999998886 468999999999999999999999
Q ss_pred hcCcccCCcceEEcc
Q 020847 229 MNGVLCSTRPMRIGP 243 (320)
Q Consensus 229 l~g~~~~g~~i~v~~ 243 (320)
|++.-+..++..++.
T Consensus 276 l~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRL 290 (608)
T ss_pred hccCCCccccceeec
Confidence 998766666666655
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.4e-22 Score=166.85 Aligned_cols=143 Identities=22% Similarity=0.491 Sum_probs=121.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
++||||.+.+.+.|+.||..|.+ ||.|+++.+..|+.+++.||||||+|+-++.|..|++.|||..++||.|+|.....
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~P-FGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDP-FGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccC-CCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 38999999999999999999998 99999999999999999999999999999999999999999999999999986544
Q ss_pred ccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeecC
Q 020847 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFANR 320 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~~ 320 (320)
-........... +.......|||..++++++++||+.+|+.||+|.+|.+-++ +|||||+|.+.
T Consensus 193 mpQAQpiID~vq----------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~ 262 (544)
T KOG0124|consen 193 MPQAQPIIDMVQ----------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 262 (544)
T ss_pred CcccchHHHHHH----------HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccc
Confidence 322211111100 11223478999999999999999999999999999999653 79999999873
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=5.8e-20 Score=158.72 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=130.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
......|-+++||+++|++||.+||+.|+ |.++.+.+ .+|+..|-|||+|.+.+++++|+ +.+...+ ..+.|++
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~m--g~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESM--GHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHh--CCceEEE
Confidence 34556789999999999999999999998 77766655 47889999999999999999999 5576666 6778888
Q ss_pred eccCCCCCCC------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHH
Q 020847 150 NWATYGAGER------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQ 222 (320)
Q Consensus 150 ~~~~~~~~~~------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A 222 (320)
..+....... .........|.+++||+.||++||.++|+. .-.+.. +.++.+ ..+++.|-|||.|++.+.|
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaG-L~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAG-LEIVPDGILLPMD-QRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcC-Ccccccceeeecc-CCCCcccceEEEecCHHHH
Confidence 6654332211 111235678999999999999999999995 433444 334555 4678999999999999999
Q ss_pred HHHHHHhcCcccCCcceEEccCC
Q 020847 223 LRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 223 ~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
++|+.. |...|+.|.|.|-.+.
T Consensus 159 e~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 159 EIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred HHHHHH-HHHhhccceEEeehhH
Confidence 999964 7788888888885443
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=1.1e-21 Score=158.43 Aligned_cols=117 Identities=25% Similarity=0.546 Sum_probs=109.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
+|||||||..+++.+|+.+|++ ||.|.++.|+++ ||||+.++...|..|+++|||..|.|..|+|+-++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQ-YGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHh-hCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 7999999999999999999998 999999999965 9999999999999999999999999999999999877
Q ss_pred cccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEee
Q 020847 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (320)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~ 318 (320)
.+ ..++|+|+||.+.++.+||++.|++||+|..++|.+ +++||+|+
T Consensus 75 sk-----------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d 120 (346)
T KOG0109|consen 75 SK-----------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFD 120 (346)
T ss_pred CC-----------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEe
Confidence 33 348899999999999999999999999999999987 69999996
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.86 E-value=1.3e-21 Score=147.65 Aligned_cols=135 Identities=32% Similarity=0.557 Sum_probs=118.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
....+||||||+..++++-|.++|-. .|.|..+.+.+|+.+...+|||||+|.+.++|+=|++-||...+.|++|+|+.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34569999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEE-EecC------CccEEEEE
Q 020847 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHV-KIPA------GKRCGFVQ 316 (320)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v-~i~~------~~~~afV~ 316 (320)
+.... .+...+..|||+||.+++++.-|.+.|+.||.+... +|++ .++||||.
T Consensus 86 as~~~--------------------~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~ 145 (203)
T KOG0131|consen 86 ASAHQ--------------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFIN 145 (203)
T ss_pred ccccc--------------------ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEe
Confidence 87221 123345889999999999999999999999998763 4443 36899999
Q ss_pred eec
Q 020847 317 FAN 319 (320)
Q Consensus 317 F~~ 319 (320)
|++
T Consensus 146 ~~s 148 (203)
T KOG0131|consen 146 YAS 148 (203)
T ss_pred chh
Confidence 975
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=8.6e-19 Score=147.88 Aligned_cols=238 Identities=15% Similarity=0.256 Sum_probs=179.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..-+++|+|+-+.++-|-|..+|+.||.|.++.-.... ..--|+|.|.+.+.|..|...|+|..|.++-..+++.+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 34457899999999999999999999999887665432 22348999999999999999999999988877888776
Q ss_pred cCCCC--------------------C------------------------------------CCCCCCC--CCceEEecC
Q 020847 152 ATYGA--------------------G------------------------------------ERRQDDG--PDFTIFVGD 173 (320)
Q Consensus 152 ~~~~~--------------------~------------------------------------~~~~~~~--~~~~l~v~n 173 (320)
+.-.. + ....-.. .+..|.|.|
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence 55110 0 0000000 147788999
Q ss_pred CCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccch
Q 020847 174 LAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATG 252 (320)
Q Consensus 174 l~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~ 252 (320)
|.. .+|.+.|..+|. +||.|.+|+|+.++ +--|.|.|.+...|..|++.|+|..+.|++|+|.+++...-...
T Consensus 305 ln~~~VT~d~LftlFg-vYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFG-VYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred CchhccchhHHHHHHh-hhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 976 589999999999 59999999999875 45799999999999999999999999999999999997643332
Q ss_pred hhhhcc---cc----------cCCCCC-CCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCE-EEEEe-cCCccEEEEE
Q 020847 253 QQYQKA---TY----------QNTQGS-QGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL-VHVKI-PAGKRCGFVQ 316 (320)
Q Consensus 253 ~~~~~~---~~----------~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i-~~v~i-~~~~~~afV~ 316 (320)
.+.... +. ..+... ...-.+++.+|.+.|||.++++|||+..|..-|-. ...++ .+++..|++.
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q 458 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQ 458 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecc
Confidence 221111 00 011111 11234678899999999999999999999877654 55555 4577888887
Q ss_pred eec
Q 020847 317 FAN 319 (320)
Q Consensus 317 F~~ 319 (320)
+.+
T Consensus 459 ~~s 461 (492)
T KOG1190|consen 459 LES 461 (492)
T ss_pred cCC
Confidence 765
No 43
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=135.97 Aligned_cols=164 Identities=17% Similarity=0.298 Sum_probs=125.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCC-CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC-C
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ-TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-T 143 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~-~ 143 (320)
........+||||+|||.++...||..+|+.|-..+.+.+..... ....+.+|||.|.+..+|..|+.+|||..|+- .
T Consensus 27 ~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 27 LADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 344456789999999999999999999999998888877755432 23457899999999999999999999999852 3
Q ss_pred CcceEeeccCCCCCCCCC--------------------------------------------------------------
Q 020847 144 EQNFRLNWATYGAGERRQ-------------------------------------------------------------- 161 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 161 (320)
...+++..++.....++.
T Consensus 107 ~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~ 186 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAP 186 (284)
T ss_pred CceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhh
Confidence 444555444322111100
Q ss_pred -------------------CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 020847 162 -------------------DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222 (320)
Q Consensus 162 -------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 222 (320)
....+.+|||.||..+++|++|+.+|+. |.....++|... +| -..||++|++.+.|
T Consensus 187 ~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~--~g--~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 187 DSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRAR--GG--MPVAFADFEEIEQA 261 (284)
T ss_pred hhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecC--CC--cceEeecHHHHHHH
Confidence 0011478999999999999999999997 988776665432 23 33799999999999
Q ss_pred HHHHHHhcCccc
Q 020847 223 LRSMTEMNGVLC 234 (320)
Q Consensus 223 ~~A~~~l~g~~~ 234 (320)
..||..|.|..+
T Consensus 262 t~am~~lqg~~~ 273 (284)
T KOG1457|consen 262 TDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHhhccee
Confidence 999999999776
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=7e-20 Score=154.88 Aligned_cols=138 Identities=29% Similarity=0.482 Sum_probs=121.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||++|+++++++.|++.|.+ ||+|.++.+++|+.+++++||+||+|++.+...+++. ...+.++|+.|.+..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 5679999999999999999999997 9999999999999999999999999999999988884 4668899999999999
Q ss_pred CcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC------CccEEEEEee
Q 020847 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFA 318 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~------~~~~afV~F~ 318 (320)
.++...... ........|+|++||..+++++|+++|++||.|.++.++. .++|+||.|.
T Consensus 83 v~r~~~~~~---------------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~ 147 (311)
T KOG4205|consen 83 VSREDQTKV---------------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFD 147 (311)
T ss_pred cCccccccc---------------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEec
Confidence 888655422 1222567999999999999999999999999999988854 3799999997
Q ss_pred c
Q 020847 319 N 319 (320)
Q Consensus 319 ~ 319 (320)
+
T Consensus 148 ~ 148 (311)
T KOG4205|consen 148 S 148 (311)
T ss_pred c
Confidence 5
No 45
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.81 E-value=2.8e-18 Score=134.85 Aligned_cols=163 Identities=18% Similarity=0.347 Sum_probs=137.4
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 72 GIRSLWIGDLQPWMEESYIAS----IFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~----~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.+.||||.||+..+..++|+. +|++||.|.+|...+. .+.+|-|||.|.+.+.|..|++.|+|.++ .++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPF--YGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcc--cCchh
Confidence 344999999999999999988 9999999999888754 45799999999999999999999999999 55666
Q ss_pred EeeccCCCCCCC---------------------------------------------CCCCCCCceEEecCCCCCCCHHH
Q 020847 148 RLNWATYGAGER---------------------------------------------RQDDGPDFTIFVGDLAADVTDYV 182 (320)
Q Consensus 148 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~v~nl~~~~t~~~ 182 (320)
++.++......- .....++..|++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 666555321100 01145678999999999999999
Q ss_pred HHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEEccCC
Q 020847 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAA 245 (320)
Q Consensus 183 l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 245 (320)
+..+|.. |...++++++... .+.|||+|.+...|..|...|.|..+. ...+.|.+++
T Consensus 163 l~~lf~q-f~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFEQ-FPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHhh-CcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999998 9999999998764 779999999999999999999998886 8888888875
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=3.3e-19 Score=142.41 Aligned_cols=87 Identities=24% Similarity=0.433 Sum_probs=77.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-c--CCcceE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-C--STRPMR 240 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~--~g~~i~ 240 (320)
..+++||||-|.+.-.|+|++.+|.. ||.|+++.+++.. .|.+||||||.|.+..+|..||+.|+|.. + ....|.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 35679999999999999999999997 9999999999984 79999999999999999999999999954 2 356799
Q ss_pred EccCCcccccch
Q 020847 241 IGPAATKKAATG 252 (320)
Q Consensus 241 v~~a~~~~~~~~ 252 (320)
|.|++.++++..
T Consensus 95 VK~ADTdkER~l 106 (371)
T KOG0146|consen 95 VKFADTDKERTL 106 (371)
T ss_pred EEeccchHHHHH
Confidence 999998876653
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.5e-18 Score=131.30 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=125.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.+..++|||+|||.++.+.+|+++|-+||.|..|.+...+ ..-.||||+|+++.+|+.|+..-+|..+++..+.+++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4567899999999999999999999999999999886442 2467999999999999999999999999666555554
Q ss_pred eccCCCCCCCC-------------------CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcce
Q 020847 150 NWATYGAGERR-------------------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKG 210 (320)
Q Consensus 150 ~~~~~~~~~~~-------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g 210 (320)
...-....... ........|.|.+||..-++.||+++..+ .|.|-...+.+| |
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-------g 151 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-------G 151 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc-------c
Confidence 43322111110 11223568999999999999999999998 999988888776 2
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 211 YGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 211 ~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
++.|+|.+.++-.-|++.|+...+.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccccc
Confidence 7899999999999999999886653
No 48
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=7.4e-19 Score=155.77 Aligned_cols=244 Identities=20% Similarity=0.311 Sum_probs=181.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccc-----------C-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHh
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHT-----------G-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~-----------G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 135 (320)
......+.+||++++..++++.+..+|..- | .+..+.+.. .++|||++|.+.++|..|+ .+
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-AL 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cc
Confidence 345567889999999999999999998543 3 255555544 4789999999999999999 77
Q ss_pred cCCCCCCCCcceEeeccCCC----------------CCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 020847 136 NGTQMPSTEQNFRLNWATYG----------------AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKV 199 (320)
Q Consensus 136 ~g~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i 199 (320)
++..+.|....+........ .............++|++||..+++..+++++.. ||.+....+
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~l 321 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRL 321 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhhee
Confidence 88777554443333222110 0111222344578999999999999999999997 999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhhcccccCC---CCCCCCCCCCccE
Q 020847 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNT---QGSQGENDPNNTT 276 (320)
Q Consensus 200 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 276 (320)
+.|..+|.++||||.+|.+......|+..|||..++++.|.|..+-........+......... .........++.+
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~V 401 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEV 401 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchh
Confidence 9999889999999999999999999999999999999999999988765554333321111111 1111344556677
Q ss_pred EEEcCCCC--c------CC--HHHHHHHhccCCCEEEEEecCC---------ccEEEEEeec
Q 020847 277 IFVGGLDP--S------VT--DDILKTVFGQYGELVHVKIPAG---------KRCGFVQFAN 319 (320)
Q Consensus 277 l~v~nl~~--~------~~--~~~L~~~f~~~G~i~~v~i~~~---------~~~afV~F~~ 319 (320)
|++.|+=. + ++ .|+++..++.||.|.+|.|++. .|..||+|++
T Consensus 402 l~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas 463 (500)
T KOG0120|consen 402 LCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFAD 463 (500)
T ss_pred hhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecC
Confidence 77777621 1 11 2677888899999999999775 5899999986
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=8.1e-19 Score=134.16 Aligned_cols=86 Identities=36% Similarity=0.639 Sum_probs=80.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
..+++|||+||++++++++|+++|++ ||.|.++.+++|..+++++|||||+|.+.++|.+|++.||+..++|+.|+|.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34569999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCccccc
Q 020847 244 AATKKAA 250 (320)
Q Consensus 244 a~~~~~~ 250 (320)
+..+...
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9876443
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.8e-18 Score=130.83 Aligned_cols=151 Identities=15% Similarity=0.272 Sum_probs=117.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.+++|||+|||.++.+.||.++|.+ ||.|.+|.+... -..-.||||+|++..+|+.||..-+|..++|..|+|+|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 3569999999999999999999998 999999987543 234569999999999999999999999999999999999
Q ss_pred Ccccccchhhhhcccc-----cCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeec
Q 020847 245 ATKKAATGQQYQKATY-----QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~ 319 (320)
..........-..... ................|.|.+||.+-+++|||+++..-|.|....+.++ |.+.|+|-+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r 159 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLR 159 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeee
Confidence 8764221110000000 0001111223334567999999999999999999999999999998886 688888865
Q ss_pred C
Q 020847 320 R 320 (320)
Q Consensus 320 ~ 320 (320)
+
T Consensus 160 ~ 160 (241)
T KOG0105|consen 160 K 160 (241)
T ss_pred h
Confidence 3
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.78 E-value=5.2e-18 Score=133.39 Aligned_cols=151 Identities=18% Similarity=0.341 Sum_probs=123.3
Q ss_pred CCceEEecCCCCCCCHHHHHH----HHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 165 PDFTIFVGDLAADVTDYVLQE----TFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~----~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
++.||||.||+..+..++|++ +|++ ||.|.+|...+ +.+.||-|||.|.+.+.|..|+++|+|..+.|++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 344999999999999999998 9997 99999998774 467899999999999999999999999999999999
Q ss_pred EccCCcccccchhhhhcc-----------c-------c----------cCCCCCC-CCCCCCccEEEEcCCCCcCCHHHH
Q 020847 241 IGPAATKKAATGQQYQKA-----------T-------Y----------QNTQGSQ-GENDPNNTTIFVGGLDPSVTDDIL 291 (320)
Q Consensus 241 v~~a~~~~~~~~~~~~~~-----------~-------~----------~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~L 291 (320)
+.||+.+........... . . ....... ....++...+++.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999998765543311000 0 0 0000001 344678889999999999999999
Q ss_pred HHHhccCCCEEEEEecCC-ccEEEEEeec
Q 020847 292 KTVFGQYGELVHVKIPAG-KRCGFVQFAN 319 (320)
Q Consensus 292 ~~~f~~~G~i~~v~i~~~-~~~afV~F~~ 319 (320)
...|+.|.....|++... .+.|||+|.+
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~ 192 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLS 192 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecch
Confidence 999999999999998875 5799999986
No 52
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=5.9e-18 Score=133.81 Aligned_cols=83 Identities=25% Similarity=0.460 Sum_probs=80.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|.|.||+.+++|+||+++|.+ ||.|..+.|.+|+.||.+||||||+|.++++|.+||+.|||+-+++-.|+|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 46789999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.1e-17 Score=146.60 Aligned_cols=167 Identities=19% Similarity=0.302 Sum_probs=130.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
...||||||.+.+++++|+..|+.||.|..|.+.+|..+|.++||+||+|.+.++|.+|+..|||..+ .++.|++...
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v 355 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVV 355 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEe
Confidence 34499999999999999999999999999999999988999999999999999999999999999666 5555555422
Q ss_pred CCCCCCC-------C------------------------------------------------------------CCC--
Q 020847 153 TYGAGER-------R------------------------------------------------------------QDD-- 163 (320)
Q Consensus 153 ~~~~~~~-------~------------------------------------------------------------~~~-- 163 (320)
....... . ...
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 2100000 0 000
Q ss_pred -----CCCceEEecCCC--CCCC--------HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 164 -----GPDFTIFVGDLA--ADVT--------DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 164 -----~~~~~l~v~nl~--~~~t--------~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
.++.++.+.|+= ...| .+||.+.+.+ ||.|..|.+.++ +.|+.||.|.+.+.|..|+++
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHH
Confidence 234455666661 1111 3788888897 999999987654 358999999999999999999
Q ss_pred hcCcccCCcceEEccCCcc
Q 020847 229 MNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~ 247 (320)
|||..|.|+.|...|-...
T Consensus 510 lhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 510 LHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred HhhhhhccceeEEEEeehh
Confidence 9999999999999887544
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=1.8e-16 Score=131.35 Aligned_cols=171 Identities=14% Similarity=0.221 Sum_probs=137.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--------GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
....+..|||+|||.++|-+++.++|+.||.|.+ |++.++. .|..+|-|.+.|...+++..|+..|++..+
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3455677999999999999999999999997654 8999994 599999999999999999999999999999
Q ss_pred CCCCcceEeeccCCCCCC---------------------------------CCCCCCCCceEEecCCCC----CCC----
Q 020847 141 PSTEQNFRLNWATYGAGE---------------------------------RRQDDGPDFTIFVGDLAA----DVT---- 179 (320)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~v~nl~~----~~t---- 179 (320)
+++.+++..+.+.... ........++|.+.|+=. ..+
T Consensus 209 --rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 209 --RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred --cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 6777777766532110 011123457899999822 223
Q ss_pred ---HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 180 ---DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 180 ---~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
.+||++...+ ||.|..|.|.- ..+.|.+-|.|.+.++|..||+.|+|+.++||.|.......+
T Consensus 287 ~dlkedl~eec~K-~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 287 NDLKEDLTEECEK-FGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHHHH-hCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 4677788897 99999997753 346889999999999999999999999999999988776644
No 55
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.4e-17 Score=125.20 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=77.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||+++|+++|+++|+.||.|.++.++.|..++.++|||||+|.+.++|+.|++.||+..+ .++.++
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~ 107 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIR 107 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999999998 556788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.|+...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 8877644
No 56
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=4.3e-17 Score=129.62 Aligned_cols=153 Identities=20% Similarity=0.395 Sum_probs=126.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
..||||+||+.+.+.+|..||..||.+.++.+. .||+||+|.+..+|..|+..+++..+.+.. +.+.|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 469999999999999999999999999888774 578999999999999999999999997655 6666665
Q ss_pred CC------CC-C-C-------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 154 YG------AG-E-R-------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 154 ~~------~~-~-~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.. .. . . .......+.|+|.++...+.+.+|.+.|.+ +|.+....+ .++++||+|..
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh--------hccccceeehh
Confidence 31 10 0 0 011234578899999999999999999998 999855543 26689999999
Q ss_pred HHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 219 ESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 219 ~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|.+|+..|+|..+.++.|.+...-
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhhhcchhccchhhcCceeeecccC
Confidence 999999999999999999999994443
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=2.5e-16 Score=105.93 Aligned_cols=70 Identities=34% Similarity=0.709 Sum_probs=67.0
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
|||+|||.++++++|+++|+. ||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999998 999999999998 6788999999999999999999999999999999885
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.66 E-value=1.3e-15 Score=118.97 Aligned_cols=155 Identities=23% Similarity=0.358 Sum_probs=115.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC---Ccce
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVT-DRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS---TRPM 239 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 239 (320)
+.-+||||.+||.++...||..+|.. |-..+...+.. ++....++.+|||.|.+..+|.+|+++|||..|+ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 44679999999999999999999997 88888776543 3333456789999999999999999999999985 7889
Q ss_pred EEccCCcccccchhhhhc--------------------c------cc---------------------------------
Q 020847 240 RIGPAATKKAATGQQYQK--------------------A------TY--------------------------------- 260 (320)
Q Consensus 240 ~v~~a~~~~~~~~~~~~~--------------------~------~~--------------------------------- 260 (320)
++++++...+..+..... . ..
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 999998765554331000 0 00
Q ss_pred --c----CCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC--ccEEEEEeec
Q 020847 261 --Q----NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG--KRCGFVQFAN 319 (320)
Q Consensus 261 --~----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~--~~~afV~F~~ 319 (320)
+ ............+.+|||-||..++++++|+.+|+.|-....++|... ...|||+|++
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~ 257 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEE 257 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHH
Confidence 0 000111123345678999999999999999999999977777777433 3478998864
No 59
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.66 E-value=5e-14 Score=118.05 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=169.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..+-.|.|++|-..++|.+|.+.++.||+|.-+..+.. ++.|.|+|++.+.|++++.......+...+...-++
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~N 102 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFN 102 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhcc
Confidence 34566999999999999999999999999977666543 678999999999999999544333333344444444
Q ss_pred ccCCCCCCCC--CCCCCCceEEecCC--CCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 151 WATYGAGERR--QDDGPDFTIFVGDL--AADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 151 ~~~~~~~~~~--~~~~~~~~l~v~nl--~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
++....-++. ....++..|.+.-| -+.+|.+-|..+... .|.|..|.|.+. +| -.|+|+|++.+.|.+|.
T Consensus 103 yStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 103 YSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAK 176 (494)
T ss_pred cchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEec--cc---eeeEEeechhHHHHHHH
Confidence 4432221211 22234455555544 457899999999998 999999988875 33 37999999999999999
Q ss_pred HHhcCccc--CCcceEEccCCcccccchhhhhc-----cc--------------------------------cc------
Q 020847 227 TEMNGVLC--STRPMRIGPAATKKAATGQQYQK-----AT--------------------------------YQ------ 261 (320)
Q Consensus 227 ~~l~g~~~--~g~~i~v~~a~~~~~~~~~~~~~-----~~--------------------------------~~------ 261 (320)
.+|||..| +-..|+|+||++.+.....+... .. ..
T Consensus 177 ~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~ 256 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGD 256 (494)
T ss_pred hhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccc
Confidence 99999776 46689999999975443221000 00 00
Q ss_pred ----------C--------CCCCCCCCCCCccEEEEcCCCC-cCCHHHHHHHhccCCCEEEEEecCC-ccEEEEEeec
Q 020847 262 ----------N--------TQGSQGENDPNNTTIFVGGLDP-SVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFAN 319 (320)
Q Consensus 262 ----------~--------~~~~~~~~~~~~~~l~v~nl~~-~~~~~~L~~~f~~~G~i~~v~i~~~-~~~afV~F~~ 319 (320)
+ ..........+++++.|.+|+. .++-+.|..+|..||.|++|++++. .|.|.|+..+
T Consensus 257 ~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 257 RHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 0 0001113345678999999987 5677999999999999999999886 4789998754
No 60
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=6.7e-15 Score=124.61 Aligned_cols=162 Identities=12% Similarity=0.236 Sum_probs=130.8
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 73 IRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 73 ~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
++.|.|.||.. .+|.+.|..+|.-||.|.+|+|..++ +-.|+|.|.+...|..|+..|+|..+.+ +.+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~g--k~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYG--KKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecC--ceEEEee
Confidence 78899999965 57999999999999999999999885 4579999999999999999999999954 6677766
Q ss_pred cCCCCC------CC------------------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEe
Q 020847 152 ATYGAG------ER------------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVT 201 (320)
Q Consensus 152 ~~~~~~------~~------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~ 201 (320)
++...- .+ .....++.+|.+.|+|.+++||||++.|.. -|.........
T Consensus 370 SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vkafkff 448 (492)
T KOG1190|consen 370 SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAFKFF 448 (492)
T ss_pred ccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEeeeec
Confidence 552110 00 001346789999999999999999999998 55544333221
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc-ceEEccCCc
Q 020847 202 DRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PMRIGPAAT 246 (320)
Q Consensus 202 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~~a~~ 246 (320)
++.+.+|++.+.+.++|..|+-.++.+.+++. .++|+|++.
T Consensus 449 ----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 33466999999999999999999999998755 899999875
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.4e-15 Score=120.44 Aligned_cols=85 Identities=24% Similarity=0.433 Sum_probs=79.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.-++.++|-|.||+.+++|++|+++|..||.|.++.|.+|+.+|.++|||||.|.+.++|.+||..|||.-+ ..+.++
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LILr 262 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLILR 262 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEEE
Confidence 344678899999999999999999999999999999999999999999999999999999999999999988 788999
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.|+.+.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998753
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=8.1e-16 Score=126.68 Aligned_cols=81 Identities=20% Similarity=0.414 Sum_probs=75.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|+|+|||....|-||+.+|.+ ||.|.+|.|+.+. .-+|||+||+|++.+||++|..+|||..+.||+|+|+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 34569999999999999999999998 9999999999984 44799999999999999999999999999999999999
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 9876
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=2.7e-15 Score=123.62 Aligned_cols=93 Identities=20% Similarity=0.374 Sum_probs=78.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
.+.+....++|+|+|||+...+-||+.+|++||+|.+|.|+.+. ..+||||||.|++.++|++|.++|+|..+ .++
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~V--EGR 164 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVV--EGR 164 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhccee--ece
Confidence 34455667899999999999999999999999999999999973 33899999999999999999999999999 566
Q ss_pred ceEeeccCCCCCCCCCC
Q 020847 146 NFRLNWATYGAGERRQD 162 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ 162 (320)
.|+++.+..+...++..
T Consensus 165 kIEVn~ATarV~n~K~~ 181 (376)
T KOG0125|consen 165 KIEVNNATARVHNKKKK 181 (376)
T ss_pred EEEEeccchhhccCCcc
Confidence 77777776655444433
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=6.7e-16 Score=109.93 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
...+++||||||++.++|+.|.++|+.+|+|..|.+-.|+.+....|||||+|.+.++|..|++.++|..+ ..++|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 45689999999999999999999999999999999999988888999999999999999999999999999 6777888
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7754
No 65
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=2.7e-15 Score=133.32 Aligned_cols=180 Identities=16% Similarity=0.319 Sum_probs=136.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
.........++||+|||...+++.+.+++..||++....++.|..+|.++||||.+|.+......|++.|||+.+.+.
T Consensus 282 ~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-- 359 (500)
T KOG0120|consen 282 STDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-- 359 (500)
T ss_pred ccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc--
Confidence 334455677899999999999999999999999999999999999999999999999999999999999999998433
Q ss_pred ceEeeccCCCCCCC-------------------CCCCCCCceEEecCCCC--C-CC-------HHHHHHHHHhhCCCeeE
Q 020847 146 NFRLNWATYGAGER-------------------RQDDGPDFTIFVGDLAA--D-VT-------DYVLQETFRAVYSSVKG 196 (320)
Q Consensus 146 ~~~~~~~~~~~~~~-------------------~~~~~~~~~l~v~nl~~--~-~t-------~~~l~~~f~~~~g~i~~ 196 (320)
.+.+..+....... .....+...|.+.|+=. + .. .|+++..+.+ ||.|..
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~ 438 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRS 438 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeE
Confidence 33333332211110 11122334444444311 1 11 1456677776 999999
Q ss_pred EEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccc
Q 020847 197 AKVVTDRTT---GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 197 v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
|.+.++... .-..|..||+|.+.+++++|+++|+|+++.||.|...|....+
T Consensus 439 v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 439 VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 999887222 2345678999999999999999999999999999999987553
No 66
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=8.5e-16 Score=121.24 Aligned_cols=79 Identities=34% Similarity=0.515 Sum_probs=71.7
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
-++||||||+|.++.++|+++|++ ||+|++..|+.|+.+|++|||+||+|.+.++|.+|++. -+-.|+||+-.++.|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 358999999999999999999998 99999999999999999999999999999999999964 4456889988887765
Q ss_pred c
Q 020847 246 T 246 (320)
Q Consensus 246 ~ 246 (320)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 67
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.62 E-value=1.1e-14 Score=124.27 Aligned_cols=153 Identities=18% Similarity=0.306 Sum_probs=118.7
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.+.+||.|||+++.+.||+++|....|+|+.|.++.| .+|++||||.|+|++++.+++|++.||.+.+.||+|.|.-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3469999999999999999999988999999999999 589999999999999999999999999999999999997655
Q ss_pred cccccchh-------------------hh----------------hcc-----cc-------c----------------C
Q 020847 246 TKKAATGQ-------------------QY----------------QKA-----TY-------Q----------------N 262 (320)
Q Consensus 246 ~~~~~~~~-------------------~~----------------~~~-----~~-------~----------------~ 262 (320)
........ +. ... +. . .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 42211100 00 000 00 0 0
Q ss_pred C-CCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC-----CccEEEEEeec
Q 020847 263 T-QGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-----GKRCGFVQFAN 319 (320)
Q Consensus 263 ~-~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~-----~~~~afV~F~~ 319 (320)
. .+...-..+....+||.||...+..+.|++.|.-.|.|+.|.+.- ++|+|.++|++
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~h 265 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDH 265 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecc
Confidence 0 001111334456789999999999999999999999999998743 47899999864
No 68
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.5e-14 Score=125.05 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=117.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCC--CccC---eEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEG---YGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g---~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
.-+++||||+||.+++|+.|...|..||.+.--+-.+....+ ..+| |+|+.|+++.++...+.+..-. ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~---~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG---EGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc---ccce
Confidence 446789999999999999999999999976332221111111 2466 9999999999999888654321 1222
Q ss_pred ceEeeccCCC----------------CCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcc
Q 020847 146 NFRLNWATYG----------------AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSK 209 (320)
Q Consensus 146 ~~~~~~~~~~----------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~ 209 (320)
.+.+.-.+.. ........++.+|||||+||.-++.++|..+|...||.|..+-|-+|++-+.++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 2222211111 111334567789999999999999999999999889999999999998889999
Q ss_pred eEEEEEeCCHHHHHHHHHH
Q 020847 210 GYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 210 g~afV~f~~~~~A~~A~~~ 228 (320)
|-|-|+|.+-.+..+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999974
No 69
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.62 E-value=5.7e-15 Score=124.03 Aligned_cols=246 Identities=16% Similarity=0.163 Sum_probs=163.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..+++..|-.++||+..+..+|..+|....-......+-....|+..|.|.|.|.+.|.-+.|++. +...+ ..+++.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhc--cCCcee
Confidence 345666788899999999999999997654333333333335677889999999999999999954 33333 444555
Q ss_pred eeccCCC-----------CCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHh---hCCCeeEEEEEecCCCCCcceEEEE
Q 020847 149 LNWATYG-----------AGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA---VYSSVKGAKVVTDRTTGRSKGYGFV 214 (320)
Q Consensus 149 ~~~~~~~-----------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~---~~g~i~~v~i~~~~~~~~~~g~afV 214 (320)
+-.+... ...........-.|.+++||.++++.|+.++|.. +-|..+.|.+++. .+|+..|-|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEE
Confidence 4333211 1111112233457888999999999999999953 3356677777766 47999999999
Q ss_pred EeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhhc-----ccccCC-----CCCCCCCCCCccEEEEcCCCC
Q 020847 215 RFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQK-----ATYQNT-----QGSQGENDPNNTTIFVGGLDP 284 (320)
Q Consensus 215 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~l~v~nl~~ 284 (320)
.|..+++|..|+.. |...++.|.|.+-.+..-+-..-.+... ...... ............+|.+++||.
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 99999999999965 6777888888886665432111110000 000000 111112223367899999999
Q ss_pred cCCHHHHHHHhccCCC-EEE--EEe-----cCCccEEEEEeec
Q 020847 285 SVTDDILKTVFGQYGE-LVH--VKI-----PAGKRCGFVQFAN 319 (320)
Q Consensus 285 ~~~~~~L~~~f~~~G~-i~~--v~i-----~~~~~~afV~F~~ 319 (320)
+.+.+||-++|..|-. |.. |.+ .+..|.|||+|.+
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~n 333 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRN 333 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhh
Confidence 9999999999998732 222 332 2347899999975
No 70
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=9e-15 Score=125.97 Aligned_cols=142 Identities=27% Similarity=0.509 Sum_probs=115.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+||+.++++++|+++|.. ||.|..+.+..+..++.++|+|||+|.+.++|..|+..++|..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999999999999999997 9999999999998899999999999999999999999999999999999999976
Q ss_pred c-ccccchhhh--hcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC
Q 020847 246 T-KKAATGQQY--QKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA 308 (320)
Q Consensus 246 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~ 308 (320)
. ......... .....................+++.+++..++..++...|..+|.+..+.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 194 PASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred cccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 4 111111100 00111111233344556778899999999999999999999999998777754
No 71
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.62 E-value=8.5e-15 Score=127.05 Aligned_cols=139 Identities=17% Similarity=0.263 Sum_probs=109.0
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
...|.+.+|||++|++||+++|+. + .|+.+.+.+. +|+..|-|||+|.+.+++.+|++ .+...++.|.|.|--+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~-~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSN-C-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhc-C-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 347889999999999999999996 4 7888666654 69999999999999999999995 68899999999998887
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEE-EEec-----CCccEEEEEeec
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH-VKIP-----AGKRCGFVQFAN 319 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~-v~i~-----~~~~~afV~F~~ 319 (320)
....... ..........+..+|.+++||+.+|++||.++|+..-.|.. |-+. +..|.|||+|++
T Consensus 85 ~~e~d~~----------~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~s 154 (510)
T KOG4211|consen 85 GAEADWV----------MRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFES 154 (510)
T ss_pred Ccccccc----------ccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecC
Confidence 6654211 11111122256789999999999999999999998854444 2222 346899999986
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=3.9e-15 Score=100.06 Aligned_cols=70 Identities=24% Similarity=0.589 Sum_probs=64.6
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
|+|+|||+++++++|+++|+. ||.|..+.+..++. +.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999998 99999999999876 89999999999999999999999999999999885
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.2e-15 Score=107.35 Aligned_cols=80 Identities=23% Similarity=0.360 Sum_probs=75.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
+++||||||+..++||.|.++|++ +|.|..|.+-.|+.+..+-|||||+|.+.++|..|++-++|+.++.++|++.|-.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 459999999999999999999997 9999999998898888999999999999999999999999999999999998865
Q ss_pred c
Q 020847 246 T 246 (320)
Q Consensus 246 ~ 246 (320)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.6e-15 Score=100.23 Aligned_cols=65 Identities=37% Similarity=0.663 Sum_probs=61.8
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 76 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
|||+|||.++|+++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|..|++.++|..+.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~ 65 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKIN 65 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEEC
Confidence 799999999999999999999999999999998 67888999999999999999999999998884
No 75
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.59 E-value=2.3e-14 Score=123.38 Aligned_cols=152 Identities=20% Similarity=0.342 Sum_probs=115.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.++|||+|||.++|+++|.++|..||.+..+.+..+..+|.++|||||+|.+.++|..|+..++|..+.+ +.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~--~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG--RPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC--ceeEeecc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999954 44555443
Q ss_pred C----CCCCCC---------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEE
Q 020847 153 T----YGAGER---------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGF 213 (320)
Q Consensus 153 ~----~~~~~~---------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~af 213 (320)
. ...... .........+++++++..++..++...|.. +|.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccc
Confidence 2 111111 112344678999999999999999999997 99997666655533333333444
Q ss_pred EEeCCHHHHHHHHH
Q 020847 214 VRFGDESEQLRSMT 227 (320)
Q Consensus 214 V~f~~~~~A~~A~~ 227 (320)
+.+.....+..+..
T Consensus 272 ~~~~~~~~~~~~~~ 285 (306)
T COG0724 272 VGNEASKDALESNS 285 (306)
T ss_pred cchhHHHhhhhhhc
Confidence 44444444444443
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6.6e-15 Score=116.25 Aligned_cols=82 Identities=27% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.+....+||||||++.+..++|+++|++||.|++..++.|+.+|++|||+||.|++.++|.+|++.-| -.|+|+..++.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccc
Confidence 45566889999999999999999999999999999999999999999999999999999999996533 34555555555
Q ss_pred eec
Q 020847 149 LNW 151 (320)
Q Consensus 149 ~~~ 151 (320)
+..
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 544
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=118.97 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=71.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+||++.+++++|+++|+. ||.|++|.|+.+.. .+|||||+|.+.++|..|+ .|+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 359999999999999999999997 99999999998853 4789999999999999999 599999999999999987
Q ss_pred ccc
Q 020847 246 TKK 248 (320)
Q Consensus 246 ~~~ 248 (320)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 553
No 78
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.3e-15 Score=111.37 Aligned_cols=79 Identities=19% Similarity=0.403 Sum_probs=73.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
-.++||||||+..+++.||..+|.. ||.|..|.|...+ .|||||+|++..||+.|+..|+|+.|.|..|+|+.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 3569999999999999999999997 9999999998764 889999999999999999999999999999999998
Q ss_pred Ccccc
Q 020847 245 ATKKA 249 (320)
Q Consensus 245 ~~~~~ 249 (320)
.-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86654
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=5.7e-15 Score=114.01 Aligned_cols=87 Identities=25% Similarity=0.399 Sum_probs=80.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
+...-..|-|-||-+.++.++|+.+|++ ||.|-+|.|..|.-|+.++|||||.|.+..+|+.|+++|+|..++|+.|.|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 3344568999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccc
Q 020847 242 GPAATKKA 249 (320)
Q Consensus 242 ~~a~~~~~ 249 (320)
.+|+-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 98876544
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=1.4e-12 Score=109.45 Aligned_cols=238 Identities=17% Similarity=0.208 Sum_probs=174.6
Q ss_pred CCceEEEc--CCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 72 GIRSLWIG--DLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 72 ~~~~v~v~--nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.+..|.+. |--+.+|-+-|..+....|+|.+|.|.+. +| --|.|+|++.+.|++|.++|||..|..+-..+++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 33444444 55578999999999999999999998875 33 3699999999999999999999999766666666
Q ss_pred eccCCCCC------------------------C-----------------------------------------------
Q 020847 150 NWATYGAG------------------------E----------------------------------------------- 158 (320)
Q Consensus 150 ~~~~~~~~------------------------~----------------------------------------------- 158 (320)
.+++...- .
T Consensus 194 eyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~ 273 (494)
T KOG1456|consen 194 EYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYR 273 (494)
T ss_pred EecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccc
Confidence 65541100 0
Q ss_pred ------CCCCCCCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 159 ------RRQDDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 159 ------~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
......+...++|.+|... ++-+.|..+|-- ||.|+.|++++.+ .|.|+|++.+....++|+.-||+
T Consensus 274 ~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~Cl-YGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 274 DGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCL-YGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhh-cCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhcc
Confidence 0001223578999999874 677889999995 9999999999875 67899999999999999999999
Q ss_pred cccCCcceEEccCCcccccchhhhhc------------cccc----CCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHh
Q 020847 232 VLCSTRPMRIGPAATKKAATGQQYQK------------ATYQ----NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVF 295 (320)
Q Consensus 232 ~~~~g~~i~v~~a~~~~~~~~~~~~~------------~~~~----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f 295 (320)
..+.|.+|.|.+++-..-........ +... .....-..--.++++|...|.|..+||+.|.++|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 99999999999988654333221100 0000 0011122344688999999999999999999999
Q ss_pred ccCCC-EEEEEecCC----ccEEEEEeecC
Q 020847 296 GQYGE-LVHVKIPAG----KRCGFVQFANR 320 (320)
Q Consensus 296 ~~~G~-i~~v~i~~~----~~~afV~F~~~ 320 (320)
...+. -++++|... ...|.++|+++
T Consensus 428 nek~v~~~svkvFp~kserSssGllEfe~~ 457 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSERSSSGLLEFENK 457 (494)
T ss_pred hhcCCCcceEEeecccccccccceeeeehH
Confidence 86643 445666433 24788998874
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-15 Score=118.35 Aligned_cols=87 Identities=28% Similarity=0.520 Sum_probs=82.4
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++||||+|...++|.-|...|-+ ||.|.+|.++.|.++++.||||||+|.-.+||.+||..||+.++.||.|+|.+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 459999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchh
Q 020847 246 TKKAATGQ 253 (320)
Q Consensus 246 ~~~~~~~~ 253 (320)
+.+.....
T Consensus 89 P~kikegs 96 (298)
T KOG0111|consen 89 PEKIKEGS 96 (298)
T ss_pred CccccCCC
Confidence 98766544
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=3.8e-16 Score=118.08 Aligned_cols=85 Identities=22% Similarity=0.487 Sum_probs=78.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.+.-|||||||..+||.||..+|++ ||+|++|.+++|+.||+++||||+.|++-.+...|+..|||..+.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3558999999999999999999998 999999999999999999999999999999999999999999999999999876
Q ss_pred Cccccc
Q 020847 245 ATKKAA 250 (320)
Q Consensus 245 ~~~~~~ 250 (320)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 655444
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=9.4e-15 Score=116.34 Aligned_cols=139 Identities=19% Similarity=0.364 Sum_probs=110.7
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
.+|||+|++.+.+.||.++|.. ||.+.++.+. .||+||+|.+..+|..|+..||+..+.|..+.|.|+...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKG-YGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhh-ccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 6899999999999999999998 9999999774 458899999999999999999999999999999999864
Q ss_pred cccchhhhhcccccC-CCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeec
Q 020847 248 KAATGQQYQKATYQN-TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~ 319 (320)
...... .-...-. ............+.+.|.|+...+.+.+|+++|+.+|.++...+ ..+++||+|++
T Consensus 74 ~~~~g~--~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 74 RRGRGR--PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSE 142 (216)
T ss_pred ccccCC--CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehh
Confidence 222100 0000000 11222233556788999999999999999999999999976665 57899999986
No 84
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.6e-14 Score=108.78 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++||||||+..+++.||+..|..||++.+|+|-..+ -|||||+|++..+|+.|+..|+|..|.+....+++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 46899999999999999999999999999999998864 8999999999999999999999999955544444443
Q ss_pred c
Q 020847 152 A 152 (320)
Q Consensus 152 ~ 152 (320)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=4.6e-14 Score=115.04 Aligned_cols=85 Identities=26% Similarity=0.506 Sum_probs=79.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+-+||||+-|+.+++|.+|+..|+. ||.|+.|.|++|..||+++|||||+|++..+..+|.+..+|..|+|+.|.|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3466789999999999999999999997 999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 020847 242 GPAATK 247 (320)
Q Consensus 242 ~~a~~~ 247 (320)
.+-...
T Consensus 176 DvERgR 181 (335)
T KOG0113|consen 176 DVERGR 181 (335)
T ss_pred Eecccc
Confidence 876654
No 86
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=5e-14 Score=94.63 Aligned_cols=66 Identities=30% Similarity=0.580 Sum_probs=59.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 76 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
|||+|||+++++++|.++|+.||.|..+.+..++. +..+++|||+|.+.++|.+|+..++|..+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999966 8899999999999999999999988787743
No 87
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=9.6e-14 Score=95.24 Aligned_cols=83 Identities=13% Similarity=0.287 Sum_probs=74.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
...++.|||.|||.++|.++..++|.+ ||.|..|+|-..+ ..+|.|||.|++..+|.+|++.|+|..+.++.+.|-
T Consensus 15 pevnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344679999999999999999999998 9999999987554 348999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
|..+...
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 9877643
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=7.6e-14 Score=121.06 Aligned_cols=79 Identities=19% Similarity=0.361 Sum_probs=72.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhcCcccCCcceEEc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE--SEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
...+||||||++.++++||+..|.. ||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3469999999999999999999998 99999999994 456 99999999987 78999999999999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
.|++.-
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 998763
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=2.1e-13 Score=91.71 Aligned_cols=72 Identities=36% Similarity=0.722 Sum_probs=67.2
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
+|+|+|||..+++++|+++|.+ ||.+..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999997 9999999988875 7789999999999999999999999999999998874
No 90
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.4e-13 Score=112.64 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=67.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.++|||+||++.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.++++|..|+ .|+|..+ .++.+++.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 57999999999999999999999999999999998853 5799999999999999999 6999999 5666777766
Q ss_pred C
Q 020847 153 T 153 (320)
Q Consensus 153 ~ 153 (320)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 5
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.49 E-value=7.6e-14 Score=123.54 Aligned_cols=85 Identities=31% Similarity=0.545 Sum_probs=81.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
+.+||||+|+++++++|.++|+. .|.|.+++++.|+.+|+++||||++|.+.++|.+|++.|||.++.||+|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 69999999999999999999998 99999999999999999999999999999999999999999999999999999988
Q ss_pred ccccch
Q 020847 247 KKAATG 252 (320)
Q Consensus 247 ~~~~~~ 252 (320)
......
T Consensus 98 ~~~~~~ 103 (435)
T KOG0108|consen 98 RKNAER 103 (435)
T ss_pred cchhHH
Confidence 766443
No 92
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.6e-13 Score=90.89 Aligned_cols=71 Identities=34% Similarity=0.697 Sum_probs=66.7
Q ss_pred ecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 171 VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 171 v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
|+|||..+++++|+++|+. ||.|..+.+..+..++.++|+|||+|.+.++|.+|++.|++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999997 9999999999987778999999999999999999999999999999999874
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=3.9e-13 Score=92.27 Aligned_cols=78 Identities=15% Similarity=0.291 Sum_probs=67.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.+..++-|||.|||+++|.+++.++|.+||.|..+++-..+. .+|.|||.|++..+|.+|++.|+|..+ ..+.+.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl~ 88 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYLV 88 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccccc--CCceEE
Confidence 456678899999999999999999999999999999876544 599999999999999999999999998 455555
Q ss_pred eec
Q 020847 149 LNW 151 (320)
Q Consensus 149 ~~~ 151 (320)
+-+
T Consensus 89 vly 91 (124)
T KOG0114|consen 89 VLY 91 (124)
T ss_pred EEe
Confidence 544
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6.1e-15 Score=111.58 Aligned_cols=80 Identities=24% Similarity=0.446 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
.++.-|||||||++.||.||...|++||.|+.|.+++|..||.++||||+.|++-.+...|++.|||..| .++.|++.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 3566799999999999999999999999999999999999999999999999999999999999999999 56666665
Q ss_pred cc
Q 020847 151 WA 152 (320)
Q Consensus 151 ~~ 152 (320)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 43
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.1e-12 Score=114.99 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=118.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC-C--CCcce---EEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT-T--GRSKG---YGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~-~--~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
.-+++||||+||++++|+.|...|.. ||.+. |....... . --++| |+|+.|+++......+.++.- .-++-
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~-FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQ-FGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhccc-ccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 34689999999999999999999997 99876 55542211 1 12456 999999999998887766543 33444
Q ss_pred ceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhc-cCCCEEEEEecCC------c
Q 020847 238 PMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG-QYGELVHVKIPAG------K 310 (320)
Q Consensus 238 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~-~~G~i~~v~i~~~------~ 310 (320)
.++|+-...+........+...+.......+..-.+.+||||++||.-++.++|..+|+ -||.|..+-|..+ +
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 56666666665555555566666666666777778999999999999999999999999 6999999999776 7
Q ss_pred cEEEEEeec
Q 020847 311 RCGFVQFAN 319 (320)
Q Consensus 311 ~~afV~F~~ 319 (320)
|-|-|+|.|
T Consensus 414 GaGRVtFsn 422 (520)
T KOG0129|consen 414 GAGRVTFSN 422 (520)
T ss_pred Ccceeeecc
Confidence 999999986
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=108.50 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=70.2
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
..+|+|+||++.+|+++|+++|+. ||.|.+|.|++| +..+++|||+|.+.++|..|+ .|+|..|.++.|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 359999999999999999999997 999999999988 445689999999999999999 799999999999998866
Q ss_pred cc
Q 020847 246 TK 247 (320)
Q Consensus 246 ~~ 247 (320)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.2e-13 Score=99.47 Aligned_cols=85 Identities=22% Similarity=0.372 Sum_probs=79.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...-.|||.++...+++++|.+.|.. ||.|+.+.+-.|+.+|..+|||+|+|++.+.|.+|+.+|||..+-|..|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34558999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 020847 244 AATKKA 249 (320)
Q Consensus 244 a~~~~~ 249 (320)
+-.+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 876543
No 98
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4e-13 Score=109.57 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
....+..+||||+-|+++++|..|+..|+.||+|..|.|+.|..+|+++|||||+|+++.+...|.+..+|..|++..+.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999777666
Q ss_pred eEeeccC
Q 020847 147 FRLNWAT 153 (320)
Q Consensus 147 ~~~~~~~ 153 (320)
|.+....
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 6665444
No 99
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.45 E-value=8.5e-13 Score=111.11 Aligned_cols=173 Identities=12% Similarity=0.169 Sum_probs=129.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc---c-CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGH---T-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~---~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
...-.|-++|||+++++.++.+||.. . |.++.+.+++. -+|+..|-|||.|..+++|..|+.+ +...+ +.+.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNI--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHH--hHHH
Confidence 34456889999999999999999952 1 34556766665 4788899999999999999999954 33333 4444
Q ss_pred eEeeccCCC-----------------------C---CCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCC-eeE--E
Q 020847 147 FRLNWATYG-----------------------A---GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKG--A 197 (320)
Q Consensus 147 ~~~~~~~~~-----------------------~---~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~--v 197 (320)
|++..++.. . ...-.......+|.+++||+..+.|||.++|.. |.. |.. |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHH-Hhhhccccee
Confidence 544333210 0 000011122568999999999999999999998 754 443 6
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccc
Q 020847 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 198 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
.++.+ ..|++.|-|||+|.+.++|.+|....+++....|.|.|-.+..++.
T Consensus 314 Hmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 314 HMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred EEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 66666 4699999999999999999999999999988999999988776543
No 100
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.44 E-value=2.5e-12 Score=107.12 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=117.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 236 (320)
-+..|||.|||.++|.+++.++|++ +|.|.. |+|.++. .|..+|-|.+.|...++...|+..|++..+.|
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3567999999999999999999998 888754 7788874 59999999999999999999999999999999
Q ss_pred cceEEccCCcccccchhh-----------------hhcccccCCCCCCCCCCCCccEEEEcCCCC----cCC-------H
Q 020847 237 RPMRIGPAATKKAATGQQ-----------------YQKATYQNTQGSQGENDPNNTTIFVGGLDP----SVT-------D 288 (320)
Q Consensus 237 ~~i~v~~a~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----~~~-------~ 288 (320)
+.|+|..|+-........ .++.-...+...........++|.++|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999999887543222110 011111222233455666778999999821 122 4
Q ss_pred HHHHHHhccCCCEEEEEec--CCccEEEEEeec
Q 020847 289 DILKTVFGQYGELVHVKIP--AGKRCGFVQFAN 319 (320)
Q Consensus 289 ~~L~~~f~~~G~i~~v~i~--~~~~~afV~F~~ 319 (320)
+||+..++.||.|.+|.|. ...|.+-|.|.|
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n 323 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN 323 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCC
Confidence 7888889999999999986 457999999987
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.43 E-value=8.3e-13 Score=106.34 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=65.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
...+|||+||++.+|+++|++||+.||.|.+|+|++|. ..++||||+|.++++|+.|+ .|+|..|. .+.|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~--d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIV--DQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeC--CceEEEEe
Confidence 45899999999999999999999999999999999884 35689999999999999999 89999994 44555554
Q ss_pred c
Q 020847 152 A 152 (320)
Q Consensus 152 ~ 152 (320)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 3
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.6e-12 Score=86.80 Aligned_cols=74 Identities=36% Similarity=0.693 Sum_probs=68.1
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
+|+|+|||..+++++|+++|.. +|.|..+.+..+.. +.++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999997 99999999998754 36789999999999999999999999999999999875
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=9.1e-13 Score=114.46 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCH--HHHHHHHHHhcCCCCCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH--AAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~--~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.....+||||||++++++++|...|..||.|.+|.|++ .+| ||||||+|.+. .++.+|+..|||..|. ++.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK--GR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK--GGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec--Ccee
Confidence 34568899999999999999999999999999999994 466 99999999987 7899999999999994 5555
Q ss_pred EeeccC
Q 020847 148 RLNWAT 153 (320)
Q Consensus 148 ~~~~~~ 153 (320)
++..++
T Consensus 81 KVNKAK 86 (759)
T PLN03213 81 RLEKAK 86 (759)
T ss_pred EEeecc
Confidence 555444
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=1.6e-12 Score=86.90 Aligned_cols=62 Identities=16% Similarity=0.375 Sum_probs=55.5
Q ss_pred HHHHHHHHH----hhCCCeeEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 180 DYVLQETFR----AVYSSVKGAK-VVTDRTT--GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 180 ~~~l~~~f~----~~~g~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
+++|+++|+ + ||.|.++. +..+..+ +.++|+|||+|.+.++|.+|++.|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 8 99999995 7777656 8899999999999999999999999999999999863
No 105
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=8.3e-13 Score=95.14 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=75.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
+-+.-.|||.|+...+||++|.+.|..||+|..+++.-|..+|-.+|||+|+|++.+.|..|+..+||..+ .+.++.+
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~V 146 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSV 146 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeE
Confidence 34456699999999999999999999999999999999999999999999999999999999999999999 5566777
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.|+...
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 776543
No 106
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=5.4e-13 Score=103.20 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
-++..+|.|-||.+-++.++|+.+|++||.|-+|.|..|.-++.++|||||.|.+..+|+.|+++|+|..++|.. +++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRe--lrV 87 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRE--LRV 87 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccce--eee
Confidence 456788999999999999999999999999999999999999999999999999999999999999999996554 444
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
..+.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 4443
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=102.80 Aligned_cols=172 Identities=28% Similarity=0.444 Sum_probs=130.5
Q ss_pred CceEEEcCCCCCCCHHH-H--HHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 73 IRSLWIGDLQPWMEESY-I--ASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~-l--~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.-..+++++-.++..+- | ...|+.|-.+...+++++. -+..++++|+.|.....-.++-..-+++.+ +...+++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcceee
Confidence 34456777666665544 3 6778888777777777774 455689999999877777777666666665 3344444
Q ss_pred eccCCCCCC-CCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 150 NWATYGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
.....-... ...-...+.+||.|.|..+++++-|...|++ |-.-...++++|..+|+++||+||.|.+..++.+|+++
T Consensus 173 a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 173 AAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccccccCCcccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 322211111 1112345679999999999999999999998 99988899999999999999999999999999999999
Q ss_pred hcCcccCCcceEEccCCccc
Q 020847 229 MNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~~ 248 (320)
|+|..++.++|+++-+..+.
T Consensus 252 m~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 252 MNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hcccccccchhHhhhhhHHh
Confidence 99999999999998776554
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.5e-13 Score=107.27 Aligned_cols=142 Identities=20% Similarity=0.332 Sum_probs=120.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|+-..++|+-|.++|-+.|+|.++.|..+ .++..+ ||||.|.++.++.-|+..+||..+.+.. +.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e--~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE--EQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccch--hhc
Confidence 456689999999999999999999999999999999877 456556 9999999999999999999999884433 332
Q ss_pred eccCCCCCCCCCCCCCCceEEecC----CCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 020847 150 NWATYGAGERRQDDGPDFTIFVGD----LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~v~n----l~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 225 (320)
+++.|+ |...++++.+.+.|+. -|.+..+++.++. .|+++.++|+.+...-..-.+
T Consensus 82 ------------------~~r~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 82 ------------------TLRCGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred ------------------ccccCCCcchhhhhcchhhheeeecc-cCCCCCccccccc-cCCccCccchhhhhhhcCcHH
Confidence 566666 8888999999999996 9999999999885 588999999999988888888
Q ss_pred HHHhcCcccC
Q 020847 226 MTEMNGVLCS 235 (320)
Q Consensus 226 ~~~l~g~~~~ 235 (320)
+....+....
T Consensus 142 ~~~y~~l~~~ 151 (267)
T KOG4454|consen 142 LDLYQGLELF 151 (267)
T ss_pred hhhhcccCcC
Confidence 8877765543
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=2.7e-12 Score=86.23 Aligned_cols=65 Identities=31% Similarity=0.611 Sum_probs=60.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
+|||+|||..+++++|+++|+.||.+..+.+..+. +.++|+|||+|.+.++|..|+..++|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 58999999999999999999999999999998875 668899999999999999999999988774
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=3.8e-12 Score=81.25 Aligned_cols=56 Identities=25% Similarity=0.588 Sum_probs=50.5
Q ss_pred HHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 183 LQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 183 l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
|+++|++ ||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|+.|+|.||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789998 9999999987652 689999999999999999999999999999999986
No 111
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=5.3e-12 Score=84.44 Aligned_cols=65 Identities=32% Similarity=0.637 Sum_probs=60.5
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 78 IGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 78 v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
|+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|..|+..+++..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 68999999999999999999999999999987778899999999999999999999999888743
No 112
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.33 E-value=3.6e-12 Score=113.02 Aligned_cols=80 Identities=28% Similarity=0.558 Sum_probs=75.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+|..+||||++|.+.++|..|++.|||..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8899999999999999999999999999999999999999999999999999999999999999999 77888888776
Q ss_pred CC
Q 020847 154 YG 155 (320)
Q Consensus 154 ~~ 155 (320)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 43
No 113
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.7e-11 Score=81.04 Aligned_cols=66 Identities=32% Similarity=0.658 Sum_probs=60.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
+|+|+|||..+++++|+++|+.+|.+..+.+..+..+ ..+++|||+|.+.++|..|++.+++..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4899999999999999999999999999999987544 56899999999999999999999998874
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.2e-12 Score=98.72 Aligned_cols=83 Identities=20% Similarity=0.379 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++||||+|..+++|.-|...|-.||.|.+|.+..|-.+++.||||||+|.-.|+|..|++.+|+..+ .++.|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 67788888
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++.+.
T Consensus 86 ~AkP~ 90 (298)
T KOG0111|consen 86 LAKPE 90 (298)
T ss_pred ecCCc
Confidence 87754
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.26 E-value=6.9e-12 Score=106.33 Aligned_cols=179 Identities=21% Similarity=0.291 Sum_probs=142.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...+++|++++...+.+.+...++..+|....+.+........++|++++.|...+.+..|+.........+......+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46788999999999999999999999998888888776677789999999999999999999543333443232222222
Q ss_pred ccCC---CCCCCCCCCCCCceEE-ecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 151 WATY---GAGERRQDDGPDFTIF-VGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 151 ~~~~---~~~~~~~~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
.... .....+.......+++ |++|+..+++++|..+|.. +|.|..+++..+..++.++|+|+|.|.....+..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 2211 1111122333444555 9999999999999999996 999999999999999999999999999999999999
Q ss_pred HHhcCcccCCcceEEccCCcccccc
Q 020847 227 TEMNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 227 ~~l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
.. ....++++++.+.+..+.....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred hc-ccCcccCcccccccCCCCcccc
Confidence 87 8899999999999998875553
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.21 E-value=3.1e-11 Score=110.34 Aligned_cols=80 Identities=16% Similarity=0.385 Sum_probs=74.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.++|||||+|+..+++.||+.+|+. ||.|.+|.++.. +|||||.+.++.+|.+|+.+|++..+.++.|+|.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHh-cccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 4789999999999999999999998 999999988654 889999999999999999999999999999999999
Q ss_pred Ccccccc
Q 020847 245 ATKKAAT 251 (320)
Q Consensus 245 ~~~~~~~ 251 (320)
..+....
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9876554
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2e-12 Score=119.28 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=154.7
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQPWMEES-YIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~-~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..+..++.++.+..... ..+..|..+|.|.++++......-....++++.+....+++.|. ...|.-+.+.... +.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~a--v~ 646 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAA--VG 646 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCcccc--CC
Confidence 44567788887777666 67889999999999988763222223348889999999999998 4555555333333 33
Q ss_pred ccCCCCCCCCCC-----CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 020847 151 WATYGAGERRQD-----DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (320)
Q Consensus 151 ~~~~~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 225 (320)
.+.......... .....++||+||+..+.++||...|.. +|.+..+.+..-...++.+|+||+.|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 333222211111 122468999999999999999999997 99988877664445688999999999999999999
Q ss_pred HHHhcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEE
Q 020847 226 MTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVK 305 (320)
Q Consensus 226 ~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~ 305 (320)
+...+++.++ ...|+|.|.|+.-|+++|+.+++.+|.+++.+
T Consensus 726 V~f~d~~~~g--------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~ 767 (881)
T KOG0128|consen 726 VAFRDSCFFG--------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLR 767 (881)
T ss_pred hhhhhhhhhh--------------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccc
Confidence 9766655554 15699999999999999999999999999998
Q ss_pred ecC-----CccEEEEEeec
Q 020847 306 IPA-----GKRCGFVQFAN 319 (320)
Q Consensus 306 i~~-----~~~~afV~F~~ 319 (320)
+.. .+|.|+|.|.+
T Consensus 768 ~vt~r~gkpkg~a~v~y~~ 786 (881)
T KOG0128|consen 768 LVTVRAGKPKGKARVDYNT 786 (881)
T ss_pred hhhhhccccccceeccCCC
Confidence 753 37899999875
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.2e-12 Score=118.01 Aligned_cols=151 Identities=15% Similarity=0.236 Sum_probs=130.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
+...++||+||+..+.+.+|...|..+|.+..+.+......++-+|+||+.|..++++.+|+....+..+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 45677999999999999999999999998777766655567888999999999999999999655554441
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
...++|.|.|...|.++++.+++. +|.+.+++++..+ .|+++|.|+|.|.+..+|.+++...+
T Consensus 736 ---------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d 798 (881)
T KOG0128|consen 736 ---------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD 798 (881)
T ss_pred ---------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhh-ccccccceeccCCCcchhhhhcccch
Confidence 127999999999999999999997 9999999988774 79999999999999999999999888
Q ss_pred CcccCCcceEEccCCcc
Q 020847 231 GVLCSTRPMRIGPAATK 247 (320)
Q Consensus 231 g~~~~g~~i~v~~a~~~ 247 (320)
+..+..+.+.|..+.+.
T Consensus 799 ~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 799 VAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhhhcCccccccCCc
Confidence 88888888888776663
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.3e-11 Score=100.68 Aligned_cols=86 Identities=24% Similarity=0.417 Sum_probs=80.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
.++.+.|||..|.+-++++||.-+|+. ||.|..+.+++|..+|.+--||||+|++.+++++|.-.|++..|+.+.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 456789999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
|+.+-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9865433
No 120
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4.6e-11 Score=109.29 Aligned_cols=108 Identities=23% Similarity=0.362 Sum_probs=86.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
++|||||+|+..++|.||.++|+.||.|.+|.++.. +|||||.+....+|.+|+.+|+...+ ..+.|++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~Wa 492 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAWA 492 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccc--cceeeEEeee
Confidence 678999999999999999999999999999999874 89999999999999999999998877 7889999998
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHH
Q 020847 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFR 188 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 188 (320)
........-.......|=|.-||+..-..||+.++.
T Consensus 493 ~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 754333222223334556777787654444555544
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.17 E-value=5e-10 Score=101.37 Aligned_cols=150 Identities=12% Similarity=0.101 Sum_probs=109.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
+.+-+.+++.+..+.|++++|.. -.+..+.|..+...+.-.|.++|+|....++.+|+.. |...+-+|.+.+..+..
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g--~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPG--RNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred heeeecccccccccchhhhhcCc--ccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 44566788999999999999974 4566677777766666688999999999999999864 66777788888877765
Q ss_pred ccccchhhhh------------------cccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEE-EEec
Q 020847 247 KKAATGQQYQ------------------KATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH-VKIP 307 (320)
Q Consensus 247 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~-v~i~ 307 (320)
.......... .................+.+|||..||..+++.++.++|+..-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 5443322110 00111222233345567789999999999999999999998877777 6664
Q ss_pred C---C--ccEEEEEeec
Q 020847 308 A---G--KRCGFVQFAN 319 (320)
Q Consensus 308 ~---~--~~~afV~F~~ 319 (320)
+ + ++.|||.|.+
T Consensus 469 ~~P~~~~~~~afv~F~~ 485 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIH 485 (944)
T ss_pred cCCcccccchhhheecc
Confidence 3 2 6799999975
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.9e-10 Score=76.81 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=50.2
Q ss_pred HHHHHHHhc----ccCCeeEEE-EEecCCC--CCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 87 ESYIASIFG----HTGEFVSGK-VIRNKQT--NFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 87 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
+++|+++|+ .||.|.++. ++.+..+ +.++|||||.|.+.++|.+|+..|||..+.|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 678999998 999999995 7776666 88999999999999999999999999998543
No 123
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.12 E-value=3e-10 Score=88.43 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.......++++.+|..+.+.++..+|.+.+|.+..+++.+++.||.++|||||+|++.+.|.-|-+.||+..+.++.|.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34445689999999999999999999983377888888899999999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 020847 242 GPAATK 247 (320)
Q Consensus 242 ~~a~~~ 247 (320)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 998887
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.7e-10 Score=107.34 Aligned_cols=169 Identities=15% Similarity=0.258 Sum_probs=138.8
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
.......+++||+|||+..+++.+|+..|..+|.|.+|.|-.. .-+....||||.|.+...+-.|...+.+..|....+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 3445567899999999999999999999999999999988655 345567899999999999999999999988855544
Q ss_pred ceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 020847 146 NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRS 225 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 225 (320)
.+.+... .....+.+++++|..++....|...|.. ||.|..|.+-+. -.||+|.|.+...|..|
T Consensus 444 r~glG~~---------kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy~hg------q~yayi~yes~~~aq~a 507 (975)
T KOG0112|consen 444 RIGLGQP---------KSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDYRHG------QPYAYIQYESPPAAQAA 507 (975)
T ss_pred ccccccc---------ccccceeeccCCCCCCChHHHHHHHhhc-cCcceeeecccC------CcceeeecccCccchhh
Confidence 4444322 2234568999999999999999999997 999998766443 44999999999999999
Q ss_pred HHHhcCcccC--CcceEEccCCcccccc
Q 020847 226 MTEMNGVLCS--TRPMRIGPAATKKAAT 251 (320)
Q Consensus 226 ~~~l~g~~~~--g~~i~v~~a~~~~~~~ 251 (320)
+..|-|..++ .+.+.|.|+......-
T Consensus 508 ~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 508 THDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred HHHHhcCcCCCCCcccccccccCCCCCh
Confidence 9999999997 4579999998765443
No 125
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=4.9e-10 Score=71.37 Aligned_cols=56 Identities=27% Similarity=0.613 Sum_probs=47.8
Q ss_pred HHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 90 IASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 90 l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
|.++|+.||.|.++.+..+. +++|||+|.+.++|..|++.|||..+ .++.+++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68899999999999997652 58999999999999999999999999 5566777663
No 126
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.4e-11 Score=93.58 Aligned_cols=120 Identities=26% Similarity=0.355 Sum_probs=97.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|+...++|+-|.++|-. .|.|..|.|..+. .+..+ ||||.|.++.+..-|++.+||..+.++.+.+.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4569999999999999999999998 9999999998874 55666 9999999999999999999999999999888765
Q ss_pred CcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecC-----CccEEEEEe
Q 020847 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA-----GKRCGFVQF 317 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~-----~~~~afV~F 317 (320)
....... |...++.+.+...|+.-|.+..+++.+ ++.++||.+
T Consensus 85 ~G~shap------------------------------ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~ 132 (267)
T KOG4454|consen 85 CGNSHAP------------------------------LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTY 132 (267)
T ss_pred cCCCcch------------------------------hhhhcchhhheeeecccCCCCCccccccccCCccCccchhh
Confidence 4332221 556777888888888888888887754 355666654
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.05 E-value=5.5e-10 Score=86.98 Aligned_cols=73 Identities=25% Similarity=0.331 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHT-GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~-G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
....-+||+.+|..+.+.++..+|.++ |.+..+++.+++.||.++|||||+|++++.|.-|.+.||++.+.+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 344568999999999999999999998 7788899989999999999999999999999999999999998433
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=9.2e-10 Score=92.08 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=70.2
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcce
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPM 239 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i 239 (320)
..+....+|||++|...++|.||+++|-+ ||+|+.+.+... +++|||+|.+++.|+.|...+ +...++|..|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 34445679999999999999999999998 999999998765 569999999999999988764 6577899999
Q ss_pred EEccCCcc
Q 020847 240 RIGPAATK 247 (320)
Q Consensus 240 ~v~~a~~~ 247 (320)
.|.|+.+.
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999983
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.96 E-value=8e-09 Score=72.36 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=71.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhC-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC----CcceEE
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVY-SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS----TRPMRI 241 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v 241 (320)
+||.|+|||...|.++|.+++...+ |....+.++.|..++.+.|||||.|.+++.|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 5999999999999999999987633 56788899999889999999999999999999999999998874 566788
Q ss_pred ccCCccc
Q 020847 242 GPAATKK 248 (320)
Q Consensus 242 ~~a~~~~ 248 (320)
.||+...
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887543
No 130
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.8e-09 Score=95.92 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=88.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
+.+.++|+|-|||..+++++|+++|+. ||+|+.|+.- -..+|.+||+|-|..+|++|+++|++.++.|+.|+-.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 445679999999999999999999996 9999997643 3458899999999999999999999999999999822
Q ss_pred cCCcccccchhhhhcccc-cCCC-CCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEE
Q 020847 243 PAATKKAATGQQYQKATY-QNTQ-GSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVH 303 (320)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~ 303 (320)
........-...-.-... .... ........ ...++. .|++..+..-++-.+..+|.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~-~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~ 206 (549)
T KOG4660|consen 146 GGARRAMGLQSGTSFLNHFGSPLANSPPGGWP-RGQLFG-MLSPTRSSILLEHISSVDGSSPG 206 (549)
T ss_pred CcccccchhcccchhhhhccchhhcCCCCCCc-CCccee-eeccchhhhhhhcchhccCcccc
Confidence 222211111110000000 0000 00111111 222332 28888877777777777787766
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.91 E-value=6.2e-09 Score=94.46 Aligned_cols=173 Identities=13% Similarity=0.059 Sum_probs=126.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
.+.+.+-+.+.++++++.|+++||...- +.+..|..+...+...|-++|.|....++.+|+.. |.+.+ ..+.+.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~--~~R~~q~~ 384 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDD--VNRPFQTG 384 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-Cchhh--hhcceeec
Confidence 4566778889999999999999997432 55666666655555689999999999999999853 33332 22333332
Q ss_pred ccC---------------------------------CCCCC-CCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE
Q 020847 151 WAT---------------------------------YGAGE-RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG 196 (320)
Q Consensus 151 ~~~---------------------------------~~~~~-~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~ 196 (320)
... ...+. .+.......+|||..||..+++.++.++|+. -..|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~-~~~Ved 463 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMG-AAAVED 463 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhh-hhhhhh
Confidence 111 00000 0122345689999999999999999999998 556766
Q ss_pred -EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccc
Q 020847 197 -AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 197 -v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
|.|... .+++.++.|||.|.+.+.+.+|...-+.+.++.|.|+|.-...+..
T Consensus 464 ~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 464 FIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 555444 5788899999999999999999876677778999999988776655
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=6.4e-09 Score=85.16 Aligned_cols=83 Identities=29% Similarity=0.408 Sum_probs=75.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
..+|+|.||+..++++||+++|.. ||.++.+.+..+ ..|.+.|.|-|.|...+||.+|++.++|..++|+.|++....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHH-hccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 468999999999999999999998 999998888888 489999999999999999999999999999999999998876
Q ss_pred ccccc
Q 020847 246 TKKAA 250 (320)
Q Consensus 246 ~~~~~ 250 (320)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 65444
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.5e-09 Score=101.18 Aligned_cols=132 Identities=21% Similarity=0.366 Sum_probs=114.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
..+++||+|||+..+++.+|+..|.. +|.|.+|.|-+... +.--.|+||.|.+.+.+-.|+..+.+..|..-.+++.+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhh-hccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 34789999999999999999999997 99999999876632 33345899999999999999999999999877777777
Q ss_pred CCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeecC
Q 020847 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANR 320 (320)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~~ 320 (320)
..++ ....+.+|+++|...+....|..+|..||.|..|.+..+.-+|+|.|.+.
T Consensus 448 G~~k-----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~ 501 (975)
T KOG0112|consen 448 GQPK-----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESP 501 (975)
T ss_pred cccc-----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccC
Confidence 7542 22458899999999999999999999999999999999999999999863
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.87 E-value=8e-09 Score=91.79 Aligned_cols=84 Identities=23% Similarity=0.369 Sum_probs=76.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...+.|||.+|...+...||+.+|++ ||.|...+++++..+--.+-|+||++.+.++|.+||+.|+.++|.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34689999999999999999999998 99999999999865555577999999999999999999999999999999999
Q ss_pred CCccc
Q 020847 244 AATKK 248 (320)
Q Consensus 244 a~~~~ 248 (320)
++...
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 98764
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=3.3e-08 Score=88.00 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..-.++|||++|...+...+|+++|++||.|+..+++.+..+...+.|+||++.+.++|.+||..|+.+.+ .++.|.+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 34567899999999999999999999999999999999877767799999999999999999999999988 5555666
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
..+..
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 55543
No 136
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.4e-09 Score=88.21 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.+...|||-.|.+-+|.++|.-+|+.||.|.+|.+++|..+|.+-.||||+|++.++++.|.-.|++..|+.+.+.+..
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999555444433
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.83 E-value=3.6e-08 Score=69.11 Aligned_cols=80 Identities=20% Similarity=0.384 Sum_probs=68.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC--CCcceEe
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHT--GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS--TEQNFRL 149 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~--~~~~~~~ 149 (320)
+||+|+|||...|.++|.+++... |...-+.+..|..++.+.|||||.|.+++.|....+.++|..|.. ..+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988543 567778899998899999999999999999999999999999853 2455666
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
.+++
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=2.2e-08 Score=84.04 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=66.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC-CCCCCCCcc
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG-TQMPSTEQN 146 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g-~~~~~~~~~ 146 (320)
..+....+|||+||-..++|.+|+++|.+||.|+++.+... +++|||+|.+.++|+.|..+.-. ..| .+..
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI--~G~R 294 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVI--NGFR 294 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeee--cceE
Confidence 34667789999999999999999999999999999998764 67999999999999999976544 334 5566
Q ss_pred eEeeccCC
Q 020847 147 FRLNWATY 154 (320)
Q Consensus 147 ~~~~~~~~ 154 (320)
+.+.|...
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 77778876
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=7.5e-09 Score=92.01 Aligned_cols=165 Identities=22% Similarity=0.228 Sum_probs=109.7
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
+...+...++|+|-|||.++++++|+.+|+.||.|..++.-.. .+|.+||+|.|..+|+.|+++|++..+.++.+
T Consensus 68 p~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 68 PSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 3344566789999999999999999999999999988665444 58999999999999999999999988854433
Q ss_pred ceEeeccCCCC-----------------CCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCc
Q 020847 146 NFRLNWATYGA-----------------GERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRS 208 (320)
Q Consensus 146 ~~~~~~~~~~~-----------------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~ 208 (320)
. ........ ........+...+ ++.|++..+..-++-.+. ++|.+.. + .++.-
T Consensus 143 k--~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~-~~~~~~~-~-----~~~~~ 212 (549)
T KOG4660|consen 143 K--RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISS-VDGSSPG-R-----ETPLL 212 (549)
T ss_pred c--CCCcccccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchh-ccCcccc-c-----cccch
Confidence 3 11110000 0000111112233 334888887755555555 5887765 3 22333
Q ss_pred ceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 209 KGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 209 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
+..-|++|.+..++..+.... |..+.+......++.+
T Consensus 213 ~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 213 NHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 446788888888886666533 6666666655555544
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.66 E-value=1.5e-07 Score=83.54 Aligned_cols=82 Identities=15% Similarity=0.275 Sum_probs=62.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.....+|||+|||.++++++|+++|..||+|....|....-.+...+||||+|.+.+++..|+.+ +-..+.++.+.|+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 34455599999999999999999999999999988866532344459999999999999999965 44445444444444
Q ss_pred ecc
Q 020847 150 NWA 152 (320)
Q Consensus 150 ~~~ 152 (320)
...
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 433
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.65 E-value=3.8e-08 Score=80.87 Aligned_cols=84 Identities=17% Similarity=0.283 Sum_probs=77.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.......+||+|+...++.+++...|+. ||.|..+.+..|...|.++||+||+|.+.+.+..|+. |||..+.|+.+.|
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 3445669999999999999999999997 9999999999998888999999999999999999997 9999999999999
Q ss_pred ccCCcc
Q 020847 242 GPAATK 247 (320)
Q Consensus 242 ~~a~~~ 247 (320)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 988766
No 142
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=1.2e-07 Score=77.74 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.+....+|+|.||++.++++||+++|+.||.+..+.+-.+ ..|.+.|.|-|.|...++|..|++.++|..++|....+
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 3445578999999999999999999999998888887777 58889999999999999999999999997786555333
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.64 E-value=6.4e-08 Score=88.30 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=74.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR---TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
++..+.|||+||+..++++.|...|.. ||.|..++|+..+ +..+.+.|+||-|.+..||++|++.|+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 455688999999999999999999997 9999999987643 335567899999999999999999999999999999
Q ss_pred EEccCCcc
Q 020847 240 RIGPAATK 247 (320)
Q Consensus 240 ~v~~a~~~ 247 (320)
++.|++.-
T Consensus 250 K~gWgk~V 257 (877)
T KOG0151|consen 250 KLGWGKAV 257 (877)
T ss_pred eecccccc
Confidence 99999653
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.61 E-value=2.1e-07 Score=85.02 Aligned_cols=85 Identities=27% Similarity=0.598 Sum_probs=72.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCC---CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ---TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
..++...++|||+||++.++++.|...|..||+|.+++|...+. ....+.|+||.|.+..+|++|++.|+|..+ .
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~ 245 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--M 245 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--e
Confidence 34455678899999999999999999999999999999876532 234578999999999999999999999998 5
Q ss_pred CcceEeeccC
Q 020847 144 EQNFRLNWAT 153 (320)
Q Consensus 144 ~~~~~~~~~~ 153 (320)
...+++.|..
T Consensus 246 ~~e~K~gWgk 255 (877)
T KOG0151|consen 246 EYEMKLGWGK 255 (877)
T ss_pred eeeeeecccc
Confidence 6677777775
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.59 E-value=6e-08 Score=78.02 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...-+||.|.|..+++.+.|...|.+|-.....++++|..+|+++||+||.|.+..++..|+++++|..+ +.+++.++
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpiklR 265 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKLR 265 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHhh
Confidence 3456699999999999999999999999999999999999999999999999999999999999999999 55555554
Q ss_pred c
Q 020847 151 W 151 (320)
Q Consensus 151 ~ 151 (320)
.
T Consensus 266 k 266 (290)
T KOG0226|consen 266 K 266 (290)
T ss_pred h
Confidence 3
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.59 E-value=4.9e-08 Score=83.04 Aligned_cols=145 Identities=24% Similarity=0.297 Sum_probs=110.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
....++|++++.+.+.+.++..++.. +|...............++|++.+.|+..+.+..|+.......+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~-~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSE-AGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchh-hcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 34679999999999999988889987 88877777766556788899999999999999999965554677777766665
Q ss_pred CCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEe
Q 020847 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQF 317 (320)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F 317 (320)
.......... ...........+..+|.|+++++++++|+.+|..+|.|..++++.. +++|+|.|
T Consensus 165 ~~~~~~~~~n----------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~ 234 (285)
T KOG4210|consen 165 NTRRGLRPKN----------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDF 234 (285)
T ss_pred cccccccccc----------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhh
Confidence 5544421110 1111123333444559999999999999999999999999999653 68999988
Q ss_pred ec
Q 020847 318 AN 319 (320)
Q Consensus 318 ~~ 319 (320)
.+
T Consensus 235 ~~ 236 (285)
T KOG4210|consen 235 SA 236 (285)
T ss_pred hh
Confidence 65
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=7.8e-09 Score=88.67 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=117.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.++|++||.+.++..+|..+|..... ...-.++ -.||+||.+.+...|.+|++.++|..- ..+..+.+..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhh-hcCceeeccch
Confidence 46899999999999999999975531 2122222 268999999999999999999998752 24444444433
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVT-DRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~-~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
-... ..++++-|.|+|....++.|..++.. ||.++.+..+. +.++ -..-|+|...+.+..|+..|+|
T Consensus 74 v~kk-------qrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 74 VPKK-------QRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred hhHH-------HHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 3211 12347999999999999999999997 99999987532 3222 1334789999999999999999
Q ss_pred cccCCcceEEccCCcc
Q 020847 232 VLCSTRPMRIGPAATK 247 (320)
Q Consensus 232 ~~~~g~~i~v~~a~~~ 247 (320)
..+.+..++|.|--..
T Consensus 142 ~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 142 PQLENQHLKVGYIPDE 157 (584)
T ss_pred hHhhhhhhhcccCchh
Confidence 9999999999987654
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.51 E-value=1.8e-07 Score=76.94 Aligned_cols=81 Identities=19% Similarity=0.405 Sum_probs=70.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
...-+...+||+|+.+.+|.+++...|+.||.+..+.+..|...|.++||+||+|.+.+.+.+|+. |+|..+.+. .+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~--~i 172 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP--AI 172 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc--cc
Confidence 344567889999999999999999999999999999999999998899999999999999999996 999999544 44
Q ss_pred Eeec
Q 020847 148 RLNW 151 (320)
Q Consensus 148 ~~~~ 151 (320)
.+.+
T Consensus 173 ~vt~ 176 (231)
T KOG4209|consen 173 EVTL 176 (231)
T ss_pred eeee
Confidence 4443
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.49 E-value=2.5e-07 Score=82.08 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=69.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
.+|||+|||.+++.++|.++|+. ||.|+...|......++...||||+|.+.+++..|+.+ +-..+++++|.|+--+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45999999999999999999997 99999998866533344458999999999999999976 47889999999987766
Q ss_pred cccc
Q 020847 247 KKAA 250 (320)
Q Consensus 247 ~~~~ 250 (320)
....
T Consensus 367 ~~~g 370 (419)
T KOG0116|consen 367 GFRG 370 (419)
T ss_pred cccc
Confidence 5433
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.45 E-value=1.5e-06 Score=58.00 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=47.6
Q ss_pred ceEEecCCCCCCCHHHH----HHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 167 FTIFVGDLAADVTDYVL----QETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l----~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..|+|.|||.+.+...| +.++....|.|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 37999999999887654 566666334465552 4589999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|.......
T Consensus 73 ~~~~~r~~ 80 (90)
T PF11608_consen 73 FSPKNREF 80 (90)
T ss_dssp SS--S---
T ss_pred EcCCcccc
Confidence 98655433
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.30 E-value=2.6e-07 Score=78.74 Aligned_cols=166 Identities=11% Similarity=0.117 Sum_probs=115.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCC---CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ---TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..|.|.||.+.+|.+.+..||.-.|.|..+.|+.+.. .......|||.|.+...+..|.. |..+++-+..+.+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p- 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP- 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe-
Confidence 4799999999999999999999999999999977422 23456799999999999988884 444444222222211
Q ss_pred ccCCC----------------CC----------CC------------------------CCCCCCCceEEecCCCCCCCH
Q 020847 151 WATYG----------------AG----------ER------------------------RQDDGPDFTIFVGDLAADVTD 180 (320)
Q Consensus 151 ~~~~~----------------~~----------~~------------------------~~~~~~~~~l~v~nl~~~~t~ 180 (320)
+.... .+ .. ..-....++++|++|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 11100 00 00 000112478999999999999
Q ss_pred HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 181 ~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
.++.+.|.. +|+|....+. .|....+|.++|..-.+...|+. ++|..+.-....+...++.
T Consensus 166 ~e~~e~f~r-~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 166 PESGESFER-KGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhhh-cchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 999999997 9998877664 34456688899999988888885 5787776444444444443
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=1.4e-06 Score=75.12 Aligned_cols=110 Identities=18% Similarity=0.361 Sum_probs=90.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-ccCCcceEEccCC
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV-LCSTRPMRIGPAA 245 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a~ 245 (320)
++||++||.+.++..||+.+|.. .-.-..-.++. ..||+||...+...|.+|++.++|+ ++.|..+.|.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~-ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGD-AKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhcc-ccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 37999999999999999999986 21111111111 1579999999999999999999995 5899999999999
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEe
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i 306 (320)
++.... +.+-|+|||+...++-|-.+...||.|+.+..
T Consensus 75 ~kkqrs-----------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 75 PKKQRS-----------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred hHHHHh-----------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 887665 55889999999999999999999999998764
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.06 E-value=6e-06 Score=70.18 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
....+|||-+|+..+++++|.++|.. +|.|.. |.|-+|++|+.+|+-|.|.|.+...|..|+..++++.+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34569999999999999999999997 888753 667788899999999999999999999999999999999
Q ss_pred CcceEEccCCcccc
Q 020847 236 TRPMRIGPAATKKA 249 (320)
Q Consensus 236 g~~i~v~~a~~~~~ 249 (320)
|..|+|..+.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999887654
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.98 E-value=1.9e-05 Score=56.84 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=43.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc-----ccCCcceEE
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV-----LCSTRPMRI 241 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-----~~~g~~i~v 241 (320)
..|.|.+++..++.++|++.|+. ||.|..|.+... ...|+|.|.+.++|.+|+..+.-. .+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 36889999999999999999998 999999887654 237999999999999999876543 345554444
Q ss_pred cc
Q 020847 242 GP 243 (320)
Q Consensus 242 ~~ 243 (320)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 33
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=5e-05 Score=61.64 Aligned_cols=102 Identities=19% Similarity=0.366 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCC
Q 020847 126 AAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT 205 (320)
Q Consensus 126 ~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~ 205 (320)
.-|..|-.+|+++.. .++.+++.++... .|+|.||...++.+.+.+.|+. ||.|+...+..| ..
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~~a------------~l~V~nl~~~~sndll~~~f~~-fg~~e~av~~vD-~r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAMHA------------ELYVVNLMQGASNDLLEQAFRR-FGPIERAVAKVD-DR 68 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeeccc------------eEEEEecchhhhhHHHHHhhhh-cCccchheeeec-cc
Confidence 456777778899988 6777888887642 8999999999999999999996 999998877777 36
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhcCcc----cCCcceEEcc
Q 020847 206 GRSKGYGFVRFGDESEQLRSMTEMNGVL----CSTRPMRIGP 243 (320)
Q Consensus 206 ~~~~g~afV~f~~~~~A~~A~~~l~g~~----~~g~~i~v~~ 243 (320)
++..+-++|.|...-.|.+|+..+.-.- ..+++.-|..
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 8888899999999999999998874322 3455555543
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.86 E-value=1e-05 Score=69.35 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=97.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc-eEEcc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT---TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP-MRIGP 243 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~ 243 (320)
.|.|.||.+.++.+.+..+|.. .|.|.++.|..... -......|||.|.+...+..|-. |.++.+-++. |.+-|
T Consensus 9 vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 8999999999999999999996 99999998866321 12335689999999999998875 5555554554 44455
Q ss_pred CCcccccchh-hhhccccc---------------------------------CCCCCCCCCCCCccEEEEcCCCCcCCHH
Q 020847 244 AATKKAATGQ-QYQKATYQ---------------------------------NTQGSQGENDPNNTTIFVGGLDPSVTDD 289 (320)
Q Consensus 244 a~~~~~~~~~-~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~ 289 (320)
.......... .+...... .+...........++++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4443322211 00000000 0000000111233678999999999999
Q ss_pred HHHHHhccCCCEEEEEecCC--ccEEEEEee
Q 020847 290 ILKTVFGQYGELVHVKIPAG--KRCGFVQFA 318 (320)
Q Consensus 290 ~L~~~f~~~G~i~~v~i~~~--~~~afV~F~ 318 (320)
++.+.|..+|+|.+..+-.. ..+|-|+|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~ 197 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFR 197 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHh
Confidence 99999999999998876432 345556653
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=4.1e-05 Score=64.44 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=63.6
Q ss_pred ceEEecCCCCCCCHHHH------HHHHHhhCCCeeEEEEEecCCC-CCcceE--EEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 167 FTIFVGDLAADVTDYVL------QETFRAVYSSVKGAKVVTDRTT-GRSKGY--GFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l------~~~f~~~~g~i~~v~i~~~~~~-~~~~g~--afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
+-+||-+|+..+-.|++ .++|.+ ||.|..|.+-+...+ +...+. .||+|.+.++|.+||.+.+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46789999988776662 488997 999999887665311 112222 49999999999999999999999999
Q ss_pred ceEEccCCcc
Q 020847 238 PMRIGPAATK 247 (320)
Q Consensus 238 ~i~v~~a~~~ 247 (320)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999998765
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.84 E-value=0.0001 Score=49.41 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=43.8
Q ss_pred ceEEEcCCCCCCCHHHH----HHHhcccCC-eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 74 RSLWIGDLQPWMEESYI----ASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l----~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..|+|.|||.+.+...| +.++..||. |.++ +.+.|+|.|.+.+.|.+|.+.|+|..+.|.. |.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~k--I~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNK--IS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS----E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccce--EE
Confidence 46999999999987765 456668873 4443 2468999999999999999999999985444 44
Q ss_pred eecc
Q 020847 149 LNWA 152 (320)
Q Consensus 149 ~~~~ 152 (320)
+.+.
T Consensus 71 v~~~ 74 (90)
T PF11608_consen 71 VSFS 74 (90)
T ss_dssp EESS
T ss_pred EEEc
Confidence 4443
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.80 E-value=5.5e-05 Score=64.45 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFV--------SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
.....+|||-+|+..+++.+|.++|.+||.|. .++|.++++|+..|+-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 55677899999999999999999999999653 3788899999999999999999999999999999999996
Q ss_pred CCCcceEeeccCC
Q 020847 142 STEQNFRLNWATY 154 (320)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (320)
+ -.|++..+..
T Consensus 143 g--n~ikvs~a~~ 153 (351)
T KOG1995|consen 143 G--NTIKVSLAER 153 (351)
T ss_pred C--CCchhhhhhh
Confidence 5 5555555543
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=5.2e-05 Score=54.55 Aligned_cols=45 Identities=27% Similarity=0.541 Sum_probs=32.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeec
Q 020847 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 275 ~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~ 319 (320)
+.|.|.+++..++.++|++.|+.||.|..|++.++...|+|.|.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~ 46 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKT 46 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECC
Confidence 578999999999999999999999999999999999999999986
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.76 E-value=4.6e-05 Score=64.42 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=66.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSS--VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
..++|||||-|++|++||.+.+.+ .|- +.++++..++.+|.+||||+|...+.....+.++.|-.+.+.|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 458999999999999999999986 654 77788888889999999999999999999999999999888877555543
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=4.5e-05 Score=61.93 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccC
Q 020847 219 ESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQY 298 (320)
Q Consensus 219 ~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~ 298 (320)
..-|..|..+|+++...|+.++|.|+.. ..|||.||+.-++.+.|...|+.|
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------a~l~V~nl~~~~sndll~~~f~~f 55 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH----------------------------AELYVVNLMQGASNDLLEQAFRRF 55 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc----------------------------ceEEEEecchhhhhHHHHHhhhhc
Confidence 3467888889999999999999999963 469999999999999999999999
Q ss_pred CCEEEEEecC-----CccEEEEEeecC
Q 020847 299 GELVHVKIPA-----GKRCGFVQFANR 320 (320)
Q Consensus 299 G~i~~v~i~~-----~~~~afV~F~~~ 320 (320)
|+|....+.. ..+.++|.|.++
T Consensus 56 g~~e~av~~vD~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 56 GPIERAVAKVDDRGKPTREGIVEFAKK 82 (275)
T ss_pred Cccchheeeecccccccccchhhhhcc
Confidence 9999876643 357888888764
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00014 Score=65.39 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCceEEecCCCCCCC--H----HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-Cc
Q 020847 165 PDFTIFVGDLAADVT--D----YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TR 237 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t--~----~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~ 237 (320)
-...|+|.|+|.--. . .-|..+|++ +|.+..+.++.+..+| ++||.|++|++..+|..|++.|||+.++ ++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345899999986322 2 345688897 9999999999886555 8999999999999999999999998875 66
Q ss_pred ceEEccCC
Q 020847 238 PMRIGPAA 245 (320)
Q Consensus 238 ~i~v~~a~ 245 (320)
.+.|..-+
T Consensus 135 tf~v~~f~ 142 (698)
T KOG2314|consen 135 TFFVRLFK 142 (698)
T ss_pred eEEeehhh
Confidence 77775433
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00017 Score=44.81 Aligned_cols=52 Identities=13% Similarity=0.323 Sum_probs=41.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
+.|-|.|.+.+..+. +...|.. ||.|..+.+.. .....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~-fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFAS-FGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHh-cCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 478889998777654 5558887 99999988752 2458999999999999985
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00026 Score=63.77 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=62.1
Q ss_pred CCCceEEEcCCCCCCC--HH----HHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 71 DGIRSLWIGDLQPWME--ES----YIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t--~~----~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
.....|+|.|+|---. .+ -|.++|+++|++..+.+..+..+| ++||.|++|.+..+|..|++.|||+.++ ..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld-kn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD-KN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec-cc
Confidence 4456689999986432 22 345779999999999999887666 8999999999999999999999999987 44
Q ss_pred cceEee
Q 020847 145 QNFRLN 150 (320)
Q Consensus 145 ~~~~~~ 150 (320)
+.+.+.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 555443
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.57 E-value=5.7e-05 Score=61.31 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=60.9
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT--------GRSK----GYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~--------~~~~----g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
...||+++||+.+...-|+++|+. ||.|-.|.+-....+ |.++ .-|.|+|.+...|.++-..|||..
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 348999999999999999999997 999999998765433 2222 237899999999999999999999
Q ss_pred cCCcc
Q 020847 234 CSTRP 238 (320)
Q Consensus 234 ~~g~~ 238 (320)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00022 Score=44.29 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=42.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHH
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~ 132 (320)
+.|-|.|.+.+..+.- ..+|..||.|.++.+.. ...+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688889987776554 55888999999987752 3679999999999999985
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.47 E-value=0.00036 Score=57.82 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhCCCeeEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccc
Q 020847 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRS-KGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 180 ~~~l~~~f~~~~g~i~~v~i~~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
++++.+.+.+ ||.|..|.|...+..-.. .--.||+|.+.++|.+|+-.|||+.|+||.++..|.....
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 4577888997 999999988776422111 2247999999999999999999999999999998876543
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.44 E-value=0.00033 Score=61.08 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEec---CCC--CCc--------ceEEEEEeCCHHHHHHHHHHhc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTD---RTT--GRS--------KGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~---~~~--~~~--------~g~afV~f~~~~~A~~A~~~l~ 230 (320)
-++++|.+.|||.+-.-+.|.++|+. +|.|+.|+|+.. +.+ +.+ +-+|+|+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 47889999999999999999999997 999999999876 322 222 4579999999999999998886
Q ss_pred CcccCCcceEE
Q 020847 231 GVLCSTRPMRI 241 (320)
Q Consensus 231 g~~~~g~~i~v 241 (320)
...-+..-++|
T Consensus 308 ~e~~wr~glkv 318 (484)
T KOG1855|consen 308 PEQNWRMGLKV 318 (484)
T ss_pred hhhhhhhcchh
Confidence 65554444444
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.43 E-value=0.00043 Score=58.47 Aligned_cols=78 Identities=14% Similarity=0.342 Sum_probs=58.7
Q ss_pred ceEEEcCCCCCCCHHHH------HHHhcccCCeeEEEEEecCCC-CCccCeE--EEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 74 RSLWIGDLQPWMEESYI------ASIFGHTGEFVSGKVIRNKQT-NFSEGYG--FIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l------~~~f~~~G~v~~~~~~~~~~~-~~~~g~a--fv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
.-|||-+|+..+..+++ .++|.+||.|.+|.+-+...+ ....+.+ ||.|.+.++|.+||...+|..+ .+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--DG 192 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--DG 192 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--cC
Confidence 34899999998877763 478999999988887664311 1123334 9999999999999999999999 45
Q ss_pred cceEeeccC
Q 020847 145 QNFRLNWAT 153 (320)
Q Consensus 145 ~~~~~~~~~ 153 (320)
+.++..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 566666544
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.39 E-value=0.00026 Score=59.99 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=61.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
...-.+|||||-+.+|++||.+.+...| .+.++++..++.+|.+||||+|...+..+.++.++.|-.+.+.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 3445689999999999999999988777 47788888899999999999999999999999998776666643
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.26 E-value=0.00015 Score=58.99 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccccc
Q 020847 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 181 ~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 250 (320)
+||...|+..||+|+.+.+..+. .-.-+|-+||.|...++|++|++.|||..+.|++|...++.-....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 56666667449999999776653 2234778999999999999999999999999999999887655433
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.24 E-value=0.00028 Score=63.90 Aligned_cols=83 Identities=13% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc---CCcc
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC---STRP 238 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~~ 238 (320)
....++.|+|.||-.-+|.-.|++++.+.+|.|++..| |+ -|..|||.|.+.++|.....+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 44567899999999999999999999975777877732 21 366899999999999999999999886 6778
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|.+.|+......
T Consensus 514 L~adf~~~deld 525 (718)
T KOG2416|consen 514 LIADFVRADELD 525 (718)
T ss_pred eEeeecchhHHH
Confidence 999888765433
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.16 E-value=0.0005 Score=55.96 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=60.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCC--------CCc----cCeEEEEEcCHHHHHHHHHHhcCCC
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT--------NFS----EGYGFIEFVSHAAAERVLQTFNGTQ 139 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--------~~~----~g~afv~f~~~~~A~~a~~~l~g~~ 139 (320)
....||+++||+......|+++|+.||.|-.|.+-....+ |.+ ..-|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999988888665333 222 3347799999999999999999999
Q ss_pred CCCCC
Q 020847 140 MPSTE 144 (320)
Q Consensus 140 ~~~~~ 144 (320)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 96553
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.16 E-value=0.00033 Score=61.03 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=57.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEec---CCCC----------CccCeEEEEEcCHHHHHHHHHHhcC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRN---KQTN----------FSEGYGFIEFVSHAAAERVLQTFNG 137 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~---~~~~----------~~~g~afv~f~~~~~A~~a~~~l~g 137 (320)
-..++|.+-|||.+-.-+.|.++|..+|.|..|+|+.. +.+. ..+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36799999999999999999999999999999999887 3332 1256899999999999999987754
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.002 Score=48.45 Aligned_cols=74 Identities=24% Similarity=0.377 Sum_probs=52.2
Q ss_pred CCCceEEecCCC------CCCCH---HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 020847 164 GPDFTIFVGDLA------ADVTD---YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (320)
Q Consensus 164 ~~~~~l~v~nl~------~~~t~---~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 234 (320)
++..||.|.-+. ....+ .+|.+.|.. ||.+.-+++..+ .-+|+|.+-++|.+|+ .++|..+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v 94 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQV 94 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEE
Confidence 445677776665 12332 367778886 999888877644 5799999999999999 5899999
Q ss_pred CCcceEEccCCcc
Q 020847 235 STRPMRIGPAATK 247 (320)
Q Consensus 235 ~g~~i~v~~a~~~ 247 (320)
+|+.|+|+...+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999887654
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0018 Score=45.83 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=50.9
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAK-VVTDR------TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 238 (320)
...|.|-+.|.. ....|.+.|++ ||.|.+.. +.++. ..-.......|+|+++.+|.+||. -||..++|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 447888899988 55667888997 99988775 11100 001124588999999999999995 6999998864
Q ss_pred -eEEccCCc
Q 020847 239 -MRIGPAAT 246 (320)
Q Consensus 239 -i~v~~a~~ 246 (320)
+-|.+.++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 55777643
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.11 E-value=0.00049 Score=62.40 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC-CCCc
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFG-HTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP-STEQ 145 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~-~~~~ 145 (320)
.....++.|+|.||-.-+|...|+.++. .+|.|.+.+|-+ -+..|||.|.+.++|.+...+|+|..|+ +..+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 3567788899999999999999999998 666777775433 3678999999999999999999999985 4455
Q ss_pred ceEeeccC
Q 020847 146 NFRLNWAT 153 (320)
Q Consensus 146 ~~~~~~~~ 153 (320)
.+.+.+..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 55555544
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.03 E-value=0.0042 Score=39.52 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccc----CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHh
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHT----GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF 135 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l 135 (320)
.+|+|+|+. +.+.++|+.+|..| ++ ..+..+-|. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 569999994 58889999999999 54 478888763 4889999999999999754
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.011 Score=37.61 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=43.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhC---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVY---SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM 229 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~---g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 229 (320)
.+|+|.|+.. ++.+||+.+|.. | .....|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~-y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSE-YFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHH-hcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3899999865 777889999997 6 245668888774 4789999999999999765
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.73 E-value=0.0038 Score=44.20 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEE-EEecC------CCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGK-VIRNK------QTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~-~~~~~------~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
..+-|.|-|.|.+ ....|.+.|++||.|.+.. +.++. .......+..|.|.++.+|.+|| ..||..+.+ .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g-~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSG-S 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETT-C
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcC-c
Confidence 4456889999988 5677788999999987764 10100 00113678999999999999999 669988742 2
Q ss_pred cceEeecc
Q 020847 145 QNFRLNWA 152 (320)
Q Consensus 145 ~~~~~~~~ 152 (320)
..+.+.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 33444443
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.62 E-value=0.014 Score=39.29 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 136 (320)
.+..+|+ .|......||.++|+.||.| .|..+.| ..|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3445565 99999999999999999988 5665554 479999999999999998775
No 183
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.56 E-value=0.052 Score=39.24 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=51.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
+....+.+...|..++.++|..+.+.+- .|..+++++|.. .++-.+.+.|.+.++|......+||+.+
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3344455666666777777876666554 477889988743 3577899999999999999999999998
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.40 E-value=0.015 Score=39.16 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=41.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
..+| .+|..+...||.++|+. ||.|. |..+.|. -|||...+++.|..|+..++-
T Consensus 11 VFhl-tFPkeWK~~DI~qlFsp-fG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHL-TFPKEWKTSDIYQLFSP-FGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEE-E--TT--HHHHHHHCCC-CCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEE-eCchHhhhhhHHHHhcc-CCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4455 49999999999999998 99987 7777653 699999999999999988763
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.33 E-value=0.066 Score=38.71 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=51.4
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
...+.+...|..++.++|..+.+..-..|..++|++|. .-++-.+.++|.+.++|..-...+||+.+.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34555666666777777877776633457788888874 235667999999999999999999998874
No 186
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.31 E-value=0.45 Score=40.14 Aligned_cols=160 Identities=12% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecC-------CCCCccCeEEEEEcCHHHHHHHH----HHhcCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNK-------QTNFSEGYGFIEFVSHAAAERVL----QTFNGT 138 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-------~~~~~~g~afv~f~~~~~A~~a~----~~l~g~ 138 (320)
.-..|.|...|+..+++-.++..-|-.||+|+++.++.+. ..-.......+.|-+.+.+-... +.|...
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3456779999999999999999999999999999999875 01123567888999988876554 222221
Q ss_pred CCCCCCcceEeeccCC--CCCC-------------------CCCCCCCCceEEecCCCCCCCHHHHH-H---HHHhhCC-
Q 020847 139 QMPSTEQNFRLNWATY--GAGE-------------------RRQDDGPDFTIFVGDLAADVTDYVLQ-E---TFRAVYS- 192 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~~~~l~v~nl~~~~t~~~l~-~---~f~~~~g- 192 (320)
.-.-....+.+.+..- .... .-...++.+.|.|. +...+.++++. + ++.. -+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~-~~n 169 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKN-SNN 169 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhcc-CCC
Confidence 1111223333333221 1000 01123456777774 33445444432 2 2221 22
Q ss_pred ---CeeEEEEEecCC--CCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 193 ---SVKGAKVVTDRT--TGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 193 ---~i~~v~i~~~~~--~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
.+++|.++.-.. ..-++.||.++|-+...|...++-|..
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 266777765322 234678999999999999999987763
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.19 E-value=0.0059 Score=56.47 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=58.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..+|||+|+...+..+-++..+..||-|.+++... |||.+|..+..+..|+..++-..+.+.+....+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 45799999999999999999999999886665432 9999999999999999888888886666655553
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.04 E-value=0.019 Score=47.86 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHhcccCCeeEEEEEecCCCCCc-cCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 87 ESYIASIFGHTGEFVSGKVIRNKQTNFS-EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 87 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~-~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
++++++-.++||.|..|.|..++..-.. .---||+|+..++|.+|+-.|||..| +++.++.++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF--GGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF--GGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee--cceeeehee
Confidence 4566777899999999998887543222 23479999999999999999999999 666666554
No 189
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.98 E-value=0.0043 Score=50.79 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=41.2
Q ss_pred cccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 95 GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 95 ~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.+||.|.++.+..+... .-.|-+||.|..+++|++|+..||+..+.|..+.
T Consensus 91 ~kygEiee~~Vc~Nl~~-hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ 141 (260)
T KOG2202|consen 91 DKYGEIEELNVCDNLGD-HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIH 141 (260)
T ss_pred HHhhhhhhhhhhcccch-hhhhhhhhhcccHHHHHHHHHHHcCccccCCcce
Confidence 39999999988765322 3488999999999999999999999999544433
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.97 E-value=0.047 Score=49.69 Aligned_cols=72 Identities=7% Similarity=0.183 Sum_probs=54.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHh-hCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--cccCCcceEE
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRA-VYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMRI 241 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~-~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v 241 (320)
..+.|+|+.||..+..|+|+.+|+. .+-.+.+|.+..+. -=||+|++..||..|.+.|.. +.|-|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3457889999999999999999973 23557777766543 249999999999999988755 4466776654
Q ss_pred cc
Q 020847 242 GP 243 (320)
Q Consensus 242 ~~ 243 (320)
+.
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 43
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.78 E-value=0.066 Score=39.94 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCCCceEEecCCCCCCC-HH---HHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 020847 163 DGPDFTIFVGDLAADVT-DY---VLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t-~~---~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 238 (320)
+.+-.+|.|+=|..++. .+ .|...++. ||.|.+|.+.- +--|.|.|.+..+|-+|+.++.. ..-|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 44556888877666543 33 44556675 99999997653 34799999999999999999876 445666
Q ss_pred eEEccC
Q 020847 239 MRIGPA 244 (320)
Q Consensus 239 i~v~~a 244 (320)
+..+|-
T Consensus 154 ~qCsWq 159 (166)
T PF15023_consen 154 FQCSWQ 159 (166)
T ss_pred EEeecc
Confidence 666664
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.67 E-value=0.081 Score=47.03 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=59.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
++.|+|-.+|..++-.||..+.....-.|.++++++|.. -.+-.+.|.|.+.++|..-...+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 779999999999999999999997556799999999742 23557899999999999999999998875
No 193
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.53 E-value=0.0079 Score=51.30 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=62.3
Q ss_pred ceEEecCCCCCCCHHHHH---HHHHhhCCCeeEEEEEecCC--CCCc-ceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 167 FTIFVGDLAADVTDYVLQ---ETFRAVYSSVKGAKVVTDRT--TGRS-KGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~---~~f~~~~g~i~~v~i~~~~~--~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
+-+||-+|+..+..+++. +.|.. ||.|..|.+.++.. .+.. ---++|+|...++|..||...+|..++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467788888877666553 67775 89999998877652 1111 11279999999999999999999999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 98888764
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.37 E-value=0.036 Score=44.12 Aligned_cols=63 Identities=14% Similarity=0.087 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CcccCCcceEEccCCccc
Q 020847 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 179 t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i~v~~a~~~~ 248 (320)
..+.|+++|.. |+.+.....++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHh-cCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999997 999888877765 2358899999999999999999 999999999999995543
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.31 E-value=0.016 Score=45.98 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=45.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc-cCCe---eEEEEEec--CCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGH-TGEF---VSGKVIRN--KQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v---~~~~~~~~--~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
....+|.|++||+.+|++++.+.+.. ++.- ..+.-..+ ........-|||.|.+.+++....+.++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 34568999999999999999997776 5544 22321121 111123456999999999999999999998763
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.14 E-value=0.018 Score=45.69 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=45.0
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCe---eEEEEEecC-CCC-CcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSV---KGAKVVTDR-TTG-RSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i---~~v~i~~~~-~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
..+|.|++||+++|++++.+.++..++.. ..+.-.... ..+ ..-..|||.|.+.+++..-+..++|+.+-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45899999999999999998766534443 223211221 111 12356999999999999999999997764
No 197
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.88 E-value=0.45 Score=40.11 Aligned_cols=158 Identities=9% Similarity=0.132 Sum_probs=94.5
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC-------CCCcceEEEEEeCCHHHHHHHHH----Hh
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT-------TGRSKGYGFVRFGDESEQLRSMT----EM 229 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A~~----~l 229 (320)
.+...++.|...|+..+++-..+...|-+ ||.|++|.++.+.. .-+......+.|-+.+.+..-.. .|
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 34455678999999999999999999998 99999999987640 11223467889999888765433 33
Q ss_pred cC--cccCCcceEEccCCcccccchh----hhhcccc-cCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhc---cCC
Q 020847 230 NG--VLCSTRPMRIGPAATKKAATGQ----QYQKATY-QNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFG---QYG 299 (320)
Q Consensus 230 ~g--~~~~g~~i~v~~a~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~---~~G 299 (320)
.. ..+....|.|.|..-+...... +.+.... .......-.....++.|.|.--.....++-|.+.+. .-+
T Consensus 89 sEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCC
Confidence 33 3467778888887643222111 0111000 011111223445667788754433333333333332 113
Q ss_pred ----CEEEEEecC--------CccEEEEEeec
Q 020847 300 ----ELVHVKIPA--------GKRCGFVQFAN 319 (320)
Q Consensus 300 ----~i~~v~i~~--------~~~~afV~F~~ 319 (320)
.|++|.|.. ++.+|.++|-+
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFln 200 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLN 200 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehh
Confidence 577787743 25789988854
No 198
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.69 E-value=0.022 Score=54.34 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=64.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCC
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATY 154 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~ 154 (320)
+.++.|.+-..+...|..++..||.|.+.+.+++ -..|.|+|.+.+.|..|+++|.|+.+...+.+.++.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3455666667889999999999999999999887 4689999999999999999999999877788888887764
Q ss_pred C
Q 020847 155 G 155 (320)
Q Consensus 155 ~ 155 (320)
.
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.62 E-value=0.13 Score=38.38 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=51.4
Q ss_pred CCCCceEEEcCCCCCC----CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 70 SDGIRSLWIGDLQPWM----EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~----t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
+..-.+|.|+=|...+ +...|...++.||+|.++.+. .+..|.|.|.+..+|-+|+.++.... -+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~---pgt 152 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRA---PGT 152 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCC---CCc
Confidence 3455678887655544 344455567999999998875 35679999999999999998887643 234
Q ss_pred ceEeec
Q 020847 146 NFRLNW 151 (320)
Q Consensus 146 ~~~~~~ 151 (320)
.+...|
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 455555
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.61 E-value=0.023 Score=54.22 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=63.6
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc--CCcceEEccCC
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC--STRPMRIGPAA 245 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~i~v~~a~ 245 (320)
+..+.|.+-..+..-|..+|+. ||.|.+.+.+++. ..|.|+|.+.+.|..|+++|+|+++ -|.+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSD-YGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHh-hcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3445566777788899999998 9999999988773 3799999999999999999999885 58899999998
Q ss_pred ccccc
Q 020847 246 TKKAA 250 (320)
Q Consensus 246 ~~~~~ 250 (320)
.-..-
T Consensus 373 ~~~~~ 377 (1007)
T KOG4574|consen 373 TLPMY 377 (1007)
T ss_pred ccccc
Confidence 75433
No 201
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.48 E-value=0.13 Score=46.89 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHH-------hcCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGH--TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT-------FNGTQM 140 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~-------l~g~~~ 140 (320)
....|.|.++.||.++-+|+|+.+|+. |-++.+|.+-.+. -=||.|++..||+.|.+. +.|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345677999999999999999999964 6678899887653 248999999999999864 456665
Q ss_pred CCC
Q 020847 141 PST 143 (320)
Q Consensus 141 ~~~ 143 (320)
..+
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 433
No 202
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.30 E-value=0.27 Score=43.88 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
...|.|-.+|..++..||-.|...+- .|.++++++|... ++-.++|.|.+.++|......+||..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 78899999999999999999987554 5889999997432 466889999999999999999999988
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.06 E-value=0.037 Score=47.36 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=54.1
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhcccCCeeEEEEEecCC--CC-CccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 74 RSLWIGDLQPWMEESYIA---SIFGHTGEFVSGKVIRNKQ--TN-FSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~--~~-~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
.-+||-+|+.....+++. ++|.+||.|.++.+.++.. .+ ....-++|.|...++|..||...+|....++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 457888998776555543 5799999999999888752 11 12334899999999999999999998885444
No 204
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.70 E-value=0.1 Score=49.66 Aligned_cols=9 Identities=11% Similarity=-0.182 Sum_probs=3.9
Q ss_pred cCCCCCCCH
Q 020847 79 GDLQPWMEE 87 (320)
Q Consensus 79 ~nlp~~~t~ 87 (320)
-.||+..+.
T Consensus 608 PvlP~gLkp 616 (1102)
T KOG1924|consen 608 PVLPFGLKP 616 (1102)
T ss_pred ccCCCCCCc
Confidence 344444443
No 205
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.53 E-value=0.14 Score=38.79 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=38.6
Q ss_pred HHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 89 YIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 89 ~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
+|.+.|..||.+.=+++.. +.-+|.|.+.++|-+|+ .++|..+.|....+++
T Consensus 52 ~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEe
Confidence 5667789999877666653 35899999999999999 8899999444444433
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.93 E-value=0.056 Score=48.24 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=58.1
Q ss_pred ceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 167 FTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 167 ~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
+.|-+.-.+.. -+.++|...|.+ ||.|..|.+-.. --.|.|+|.+..+|-+|. +.++..|+||.|+|.|-.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhh-cCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 34444444544 356899999997 999999976433 236899999999998877 579999999999999988
Q ss_pred ccc
Q 020847 246 TKK 248 (320)
Q Consensus 246 ~~~ 248 (320)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 754
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.89 E-value=0.51 Score=31.45 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHhhCCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 176 ADVTDYVLQETFRAVYSS-----VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++..+|..++.. .+. |-.|.+.. .|+||+-... .|..+++.|++..+.|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~-~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICN-EAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHT-CTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHh-ccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 36888999999987 544 44555543 2899998765 889999999999999999999764
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.73 E-value=0.07 Score=49.67 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=81.1
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
..++..++||+|+...+..+-++.++.. +|.|..+.... |+|+.|..+.-+.+|+..|+-..++|..+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3455669999999999999999999997 99988775432 8999999999999999999999998888877
Q ss_pred ccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhcc
Q 020847 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQ 297 (320)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~ 297 (320)
..-.........+.... ......-......+-+.|.|++-...+.+.+..+.-
T Consensus 106 ~~d~q~~~n~~k~~~~~---~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 106 NVDEQTIENADKEKSIA---NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred cchhhhhcCccccccch---hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 65422211111111110 000000000111455678888877776666655543
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.43 E-value=0.79 Score=29.71 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 177 ~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.++-++++.-+.+ |+- . +|..|+ + | -||.|.+..+|+++....+|+.+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~-y~~-~--~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YRW-D--RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhc-CCc-c--eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999997 743 3 344442 2 2 489999999999999999999988777654
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.03 E-value=0.21 Score=34.44 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=45.3
Q ss_pred EEEEeCCHHHHHHHHHHhcC--cccCCcceEEccCC--cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCC
Q 020847 212 GFVRFGDESEQLRSMTEMNG--VLCSTRPMRIGPAA--TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287 (320)
Q Consensus 212 afV~f~~~~~A~~A~~~l~g--~~~~g~~i~v~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 287 (320)
|+|+|.+..-|.+.++. .. ..+++..+.|.-.- ......-+ .......++|.|.|||....
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~q--------------v~~~vs~rtVlvsgip~~l~ 65 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQ--------------VFSGVSKRTVLVSGIPDVLD 65 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEE--------------EEEcccCCEEEEeCCCCCCC
Confidence 68999999999998853 22 33455555554322 22111100 01234568899999999999
Q ss_pred HHHHHHHhc
Q 020847 288 DDILKTVFG 296 (320)
Q Consensus 288 ~~~L~~~f~ 296 (320)
+++|++..+
T Consensus 66 ee~l~D~Le 74 (88)
T PF07292_consen 66 EEELRDKLE 74 (88)
T ss_pred hhhheeeEE
Confidence 999998875
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.70 E-value=0.69 Score=29.99 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 84 WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 84 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
.++-++++.-++.|+- .+|..|. .|| ||.|.+..+|+++....+|..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEE
Confidence 5788999999999983 3444552 454 8999999999999999988876
No 212
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=0.85 Score=42.13 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCCceEEecCCCCC-CCHHHHHHHHHhhC----CCeeEEEEEecC----------CCCC---------------------
Q 020847 164 GPDFTIFVGDLAAD-VTDYVLQETFRAVY----SSVKGAKVVTDR----------TTGR--------------------- 207 (320)
Q Consensus 164 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~~----g~i~~v~i~~~~----------~~~~--------------------- 207 (320)
..+++|-|-||.|+ +..+||.-+|++ | |.|.+|.|.... ..|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nS-FlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNS-FLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHh-hcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45679999999996 788999999886 5 568888874321 0111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhcCcccC--CcceEEccCC
Q 020847 208 ----------------SKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245 (320)
Q Consensus 208 ----------------~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~ 245 (320)
..-||.|+|.+.+.|......++|..+. +..|.++|.-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1248999999999999999999999885 5566666643
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.99 E-value=0.19 Score=34.61 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=41.8
Q ss_pred EEEEEcCHHHHHHHHHHhcCCCCCCCC--cceEeeccCCCCCCC--CCCCCCCceEEecCCCCCCCHHHHHHHHH
Q 020847 118 GFIEFVSHAAAERVLQTFNGTQMPSTE--QNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFR 188 (320)
Q Consensus 118 afv~f~~~~~A~~a~~~l~g~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 188 (320)
|+|.|.++.-|++.++. ....+.... ..+++.........+ -......++|.|.|||....+++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999953 222222122 222222211111111 11234456999999999999999987664
No 214
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.91 E-value=0.64 Score=38.94 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=41.2
Q ss_pred CCCCccEEEEcCCCCcCCHHHHHHHhccCCCEE-EEEecCCccEEEEEeecC
Q 020847 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELV-HVKIPAGKRCGFVQFANR 320 (320)
Q Consensus 270 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~-~v~i~~~~~~afV~F~~~ 320 (320)
.....+-|+++||+.++.-.||+..+...|.+- ++.+.-..|-||++|-|+
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 344556699999999999999999999887554 566666689999999875
No 215
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.43 E-value=1.5 Score=36.78 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=39.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHH
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHA 126 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~ 126 (320)
........||++||+.++.-.||+.-+++.|.+ -..+.. ....|-||++|.+..
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCcc
Confidence 333445569999999999999999999887743 333332 225788999997653
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=89.96 E-value=0.7 Score=35.56 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccccchhhhh
Q 020847 177 DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQ 256 (320)
Q Consensus 177 ~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~ 256 (320)
..+-..|...+.+..+....+.+..- ..++..+.|.+.+++.++++ .....++|..+.+..-++.......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~--- 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEV--- 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccc---
Confidence 46677777777664444434444332 25689999999999999885 3556677887777766644322111
Q ss_pred cccccCCCCCCCCCCCCccEEEEcCCCCc-CCHHHHHHHhccCCCEEEEEecC
Q 020847 257 KATYQNTQGSQGENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVHVKIPA 308 (320)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~i~~v~i~~ 308 (320)
.......=|.|.|||.. .+++-|+.+.+.+|.+.+++...
T Consensus 99 ------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 99 ------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 11112234778999997 57788899999999999998754
No 217
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.57 E-value=0.24 Score=44.42 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=61.4
Q ss_pred CCCCceEEEcCCCCCC-CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWM-EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~-t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..+.+.|-+.-+|+.. |..+|...|..||.|..|.+-.. .-.|.|+|.+..+|-.|. ...+..| .++.++
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avl--nnr~iK 439 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVL--NNRFIK 439 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-cccccee--cCceeE
Confidence 4456667777777665 78899999999999999887543 347999999999998887 6788888 677888
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.|-..+.
T Consensus 440 l~whnps~ 447 (526)
T KOG2135|consen 440 LFWHNPSP 447 (526)
T ss_pred EEEecCCc
Confidence 88877543
No 218
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.78 E-value=0.6 Score=39.48 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=44.4
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 76 LWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 76 v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
|-|-|.|.... ..|..+|++||.|.+..... .-.+-+|.|.+.-+|.+|| ..||+.|.
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCeeec
Confidence 55557776655 45667899999987765432 3468999999999999999 66888885
No 219
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.77 E-value=0.92 Score=38.44 Aligned_cols=77 Identities=12% Similarity=0.225 Sum_probs=56.1
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc-eEEccC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP-MRIGPA 244 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-i~v~~a 244 (320)
+.-|.|-+++..-.. -|..+|++ ||.|++.... ....+-+|.|.++-+|.+||. -||+.|+|.. |-|..+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~-cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSR-CGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHh-hCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 456777788776544 46678886 9999877543 234589999999999999995 5999987764 556665
Q ss_pred Ccccccc
Q 020847 245 ATKKAAT 251 (320)
Q Consensus 245 ~~~~~~~ 251 (320)
..+.-..
T Consensus 268 tDksvi~ 274 (350)
T KOG4285|consen 268 TDKSVIN 274 (350)
T ss_pred CCHHHhc
Confidence 5554443
No 220
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.38 E-value=0.32 Score=45.43 Aligned_cols=31 Identities=45% Similarity=0.438 Sum_probs=17.9
Q ss_pred hhhhhcCcchhhccCCCCCCCCCCCCCCCCC
Q 020847 22 QWMAYQQQSQQQQQQHQTPVPPPVGWTPQPV 52 (320)
Q Consensus 22 q~~~~~qq~qqqqq~~~~~~~~~~~~~~~~~ 52 (320)
.+.++|||+||||++-+++.+|.+.|.++..
T Consensus 70 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~A~ 100 (1179)
T KOG3648|consen 70 SQLQQQQQQQQQQQQLQPPQPPFPAGGPPAR 100 (1179)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCcccCCCHHH
Confidence 3444444555555566666677777776543
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.24 E-value=1.1 Score=35.81 Aligned_cols=59 Identities=17% Similarity=0.202 Sum_probs=42.3
Q ss_pred CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc--CCCCCCCCcceEeecc
Q 020847 86 EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN--GTQMPSTEQNFRLNWA 152 (320)
Q Consensus 86 t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~--g~~~~~~~~~~~~~~~ 152 (320)
....|+++|..++.+..+..++. -+-..|.|.+.+.|..|...|+ +..+ .+..+++.++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEc
Confidence 45789999999999888887764 5568999999999999999988 7777 4444555554
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=8.8 Score=35.84 Aligned_cols=84 Identities=15% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEEecCCC----------C----------------------
Q 020847 70 SDGIRSLWIGDLQPW-MEESYIASIFGHT----GEFVSGKVIRNKQT----------N---------------------- 112 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----G~v~~~~~~~~~~~----------~---------------------- 112 (320)
...+++|-|-|+.++ +..++|..+|..| |.|.+|.|+..... |
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 566788999999986 5888998888666 47889988764311 1
Q ss_pred ---------------CccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 113 ---------------FSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 113 ---------------~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
...-||.|+|.+.+.|.+....++|..+...+..+.+++..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 12458999999999999999999999998777777777654
No 223
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=79.27 E-value=0.62 Score=42.73 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=56.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
..|+|+++|+++.++-.+|..+++.+-.+..+.+..+........+++|.|.-.-.-..|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3577999999999999999999999887777777655444456788999999877777888888887763
No 224
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=78.44 E-value=4.4 Score=39.24 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.3
Q ss_pred HHHHHh
Q 020847 224 RSMTEM 229 (320)
Q Consensus 224 ~A~~~l 229 (320)
.|++++
T Consensus 806 ~ACEE~ 811 (1102)
T KOG1924|consen 806 AACEEL 811 (1102)
T ss_pred HHHHHH
Confidence 344333
No 225
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.59 E-value=2.3 Score=39.70 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 020847 219 ESEQLRSMTEM 229 (320)
Q Consensus 219 ~~~A~~A~~~l 229 (320)
..++.++++.+
T Consensus 429 ~~d~~~nse~~ 439 (728)
T KOG4592|consen 429 HGDPYANSELL 439 (728)
T ss_pred cchHHHHHHHH
Confidence 44555555544
No 226
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=75.86 E-value=1.1 Score=45.49 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=11.2
Q ss_pred hhhhhhhhcCcchhhccCCCCCCCC
Q 020847 19 QHQQWMAYQQQSQQQQQQHQTPVPP 43 (320)
Q Consensus 19 ~~qq~~~~~qq~qqqqq~~~~~~~~ 43 (320)
|+||++++.|++||+.+......+|
T Consensus 359 ~q~qq~H~~~qq~QH~q~~~~nq~~ 383 (1973)
T KOG4407|consen 359 HQQQQQHLYQQQQQHHQFMRANQPP 383 (1973)
T ss_pred HHHhccccchhHHHHHHHHhccCCc
Confidence 3334444445555554544444433
No 227
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=74.69 E-value=8.1 Score=36.66 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+|++-|--..-+..-+..++.. ++.+...+++.....+-.-+-++++|.....+..|. .|.+..+....+.+.
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~-~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEK-KNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKSH 585 (681)
T ss_pred CCceecccccccCCCcchhhCccc-ccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceecc
Confidence 347888888888888888888886 889988888887666655558999999998776654 567776666555543
No 228
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.71 E-value=10 Score=24.16 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=14.2
Q ss_pred HHHHHHhcccCCeeEEEE
Q 020847 88 SYIASIFGHTGEFVSGKV 105 (320)
Q Consensus 88 ~~l~~~f~~~G~v~~~~~ 105 (320)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999855444
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.35 E-value=14 Score=32.92 Aligned_cols=57 Identities=19% Similarity=0.080 Sum_probs=45.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEEecCCCCCccCeEEEEEcCHHHHHHHHH
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~ 133 (320)
.+-.+.|-|.++|.....+||...|+.|+.- -+|+.+- ..+||..|++...|..||.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD-------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD-------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEee-------cceeEEeecchHHHHHHhh
Confidence 3345778999999999999999999999852 2344443 4589999999999999994
No 230
>PRK10927 essential cell division protein FtsN; Provisional
Probab=67.23 E-value=42 Score=29.14 Aligned_cols=64 Identities=8% Similarity=-0.078 Sum_probs=41.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
..-.|-||-+.....-+.|+.-+..-|--..+ .. .|.-...-.==|.+.++|++++..|.+.-+
T Consensus 246 ~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I--~~---~g~~~RVrVGPf~sr~eAe~a~~rLk~aGi 309 (319)
T PRK10927 246 RRWMVQCGSFRGAEQAETVRAQLAFEGFDSKI--TT---NNGWNRVVIGPVKGKENADSTLNRLKMAGH 309 (319)
T ss_pred CcEEEEeCccCCHHHHHHHHHHHHHcCCeeEE--cc---CCcEEEEEeCCCCCHHHHHHHHHHHHHCCC
Confidence 44567888888888888888888777743333 11 121111122237899999999998876655
No 231
>PRK11901 hypothetical protein; Reviewed
Probab=67.05 E-value=68 Score=28.06 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEE--EEcCHHHHHHHHHHhcC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFI--EFVSHAAAERVLQTFNG 137 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv--~f~~~~~A~~a~~~l~g 137 (320)
....+|-|.. ...++.|..|.+.++ +..++++.....|+ ..|..| .|.+.++|..|+..|-.
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4445555554 356888999888876 45566666544443 344444 58999999999987653
No 232
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=66.62 E-value=0.91 Score=41.73 Aligned_cols=71 Identities=8% Similarity=0.131 Sum_probs=55.4
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
.++|++.|++++++.++|..+++. +-.+..+.+..+..-.+...+.+|+|+.--.-..|+-+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~-i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKG-IPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhcc-CchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 578999999999999999999997 77766666655433344566789999988888888888888766443
No 233
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.35 E-value=35 Score=22.51 Aligned_cols=57 Identities=16% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHhcccCC-----eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 82 QPWMEESYIASIFGHTGE-----FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 82 p~~~t~~~l~~~f~~~G~-----v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
-..++..+|..++...+. |-.+.+. ..|+||+-. .+.|..++..|++..+.|+...+
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE--TT-HHHHHHHHTT--SSS----E
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEE
Confidence 345788888888876643 4456654 348899876 45888999999999995544443
No 234
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.23 E-value=6.1 Score=33.16 Aligned_cols=36 Identities=31% Similarity=0.590 Sum_probs=28.9
Q ss_pred CCccEEEEcCCCCc------------CCHHHHHHHhccCCCEEEEEec
Q 020847 272 PNNTTIFVGGLDPS------------VTDDILKTVFGQYGELVHVKIP 307 (320)
Q Consensus 272 ~~~~~l~v~nl~~~------------~~~~~L~~~f~~~G~i~~v~i~ 307 (320)
....+|++.+||.. .+++-|+..|+.||.|..|+|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34467888888854 3567899999999999999985
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.43 E-value=5 Score=31.52 Aligned_cols=75 Identities=9% Similarity=0.168 Sum_probs=48.8
Q ss_pred eEEecCCCCCC-CHHHHHHHHHhhCCCeeE---EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc-ceEEc
Q 020847 168 TIFVGDLAADV-TDYVLQETFRAVYSSVKG---AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PMRIG 242 (320)
Q Consensus 168 ~l~v~nl~~~~-t~~~l~~~f~~~~g~i~~---v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i~v~ 242 (320)
++++.+++..+ ++.+.+..|+..|-.+.+ ..+++ +.+...|.|.+.+.|..|...+++..+.|. .+...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 56677777643 333333334333332222 22222 345677899999999999999999999888 78887
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
++.+.-
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 777653
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.50 E-value=11 Score=27.60 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=28.4
Q ss_pred eEEecCCCCC---------CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 020847 168 TIFVGDLAAD---------VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQ 222 (320)
Q Consensus 168 ~l~v~nl~~~---------~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 222 (320)
++.|-|++.. .+.++|++.|+. |..++ +..+.+. .-..|+++|+|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 4556666433 355889999997 98875 6666664 34688999999985443
No 237
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=63.93 E-value=16 Score=23.86 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 181 YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 181 ~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
++|.+.|....-.|..+.-++...++.+-..-||+.+...+ ..+.++=..+++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCC
Confidence 46778888734468888877776667777788888877655 22345567788888998887654
No 238
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.32 E-value=8.1 Score=28.27 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=26.0
Q ss_pred EEEcCCCCC---------CCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCH
Q 020847 76 LWIGDLQPW---------MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125 (320)
Q Consensus 76 v~v~nlp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~ 125 (320)
+.|-|++.+ .+.++|.+.|+.|.++ +++.+.+.. ...|+++|+|...
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SS
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCC
Confidence 455666443 3567899999999987 566666643 3689999999864
No 239
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=63.05 E-value=16 Score=26.34 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHh--hCCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 020847 174 LAADVTDYVLQETFRA--VYSSVKGAKVVTDRTTGRSKGYGFVRFGDES 220 (320)
Q Consensus 174 l~~~~t~~~l~~~f~~--~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~ 220 (320)
-|..+|-.+++++|+. +|-.|..-.+.+|--..-+-..||..|....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 4678899999999986 3445554444444211123447888887653
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=63.02 E-value=44 Score=22.84 Aligned_cols=56 Identities=7% Similarity=0.162 Sum_probs=41.8
Q ss_pred EecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 170 FVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 170 ~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
|.=.++...+..+|+..++..||. |.+|..+.-+ ....-|||.+..-.+|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 344567899999999999998875 7777766553 1234699999998888876543
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.91 E-value=22 Score=31.70 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=44.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
...|-|.++|...-.+||...|.. |+. --+|.++-|. .||..|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~-yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFET-YQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHH-hhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 357889999999999999999997 765 4456666553 89999999999999984
No 242
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=61.02 E-value=25 Score=26.79 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=65.9
Q ss_pred EEEcCCC--CCCCHHHHHHHhcc-cCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 76 LWIGDLQ--PWMEESYIASIFGH-TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 76 v~v~nlp--~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
..||.+. ...+-..|...+.. ++....+.+..- ..++..+.|.+.+++.++++ .....+ .+..+.+..-
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~--~~~~~~l~~W 89 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNF--NGHFLILQRW 89 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccc--cccchhhhhh
Confidence 4455442 24556666665543 333223443332 36789999999999999884 222233 2333333332
Q ss_pred CCCCC-CCCCCCCCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEe
Q 020847 153 TYGAG-ERRQDDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVT 201 (320)
Q Consensus 153 ~~~~~-~~~~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~ 201 (320)
..... ....-.....-|.|.|||.. .+++-++.+.+. .|.+.++...+
T Consensus 90 ~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t 139 (153)
T PF14111_consen 90 SPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENT 139 (153)
T ss_pred cccccccccceeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCC
Confidence 21111 11111112334678899986 677777888886 99998887543
No 243
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=59.32 E-value=8.3 Score=32.68 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=7.0
Q ss_pred HHHHHHHhcccCC
Q 020847 87 ESYIASIFGHTGE 99 (320)
Q Consensus 87 ~~~l~~~f~~~G~ 99 (320)
.+-|+-+-+.||-
T Consensus 265 qeflkmLke~~g~ 277 (422)
T PF13388_consen 265 QEFLKMLKENYGY 277 (422)
T ss_pred HHHHHHHHhccCC
Confidence 3445555566763
No 244
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=55.22 E-value=37 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhhCCCeeEEEEEec----CCCCCcceEEEEEeCCHHHHH
Q 020847 177 DVTDYVLQETFRAVYSSVKGAKVVTD----RTTGRSKGYGFVRFGDESEQL 223 (320)
Q Consensus 177 ~~t~~~l~~~f~~~~g~i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~ 223 (320)
.++.+||++-+.+.|-.-.++.++.+ .-+|++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 57889999888877765444444333 335677888877 55555443
No 245
>PRK11901 hypothetical protein; Reviewed
Probab=54.48 E-value=66 Score=28.14 Aligned_cols=62 Identities=13% Similarity=0.252 Sum_probs=40.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhcCc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFV--RFGDESEQLRSMTEMNGV 232 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~g~ 232 (320)
...+|-|..+ .+++.|..+.++ ++ +..+.+.....+|+.. |..| .|.+.++|..|+..|-..
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~-~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKK-QN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHH-cC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456666554 457788888876 54 4556655544445433 5544 499999999999987643
No 246
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=53.02 E-value=51 Score=20.46 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=34.6
Q ss_pred EEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeec
Q 020847 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 276 ~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~ 319 (320)
++.|.|+.-.--...|+..+...-.|.++.+....+.+-|.|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~ 44 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDP 44 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEST
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEec
Confidence 46777777777778888888888888888888777888887753
No 247
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.95 E-value=68 Score=21.53 Aligned_cols=56 Identities=9% Similarity=0.140 Sum_probs=41.1
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
-|+-.++.+.+..+|+..++..||. |.+|..+.-+ ....-|||.+..-++|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHH
Confidence 4445678899999999999987874 7777765543 123469999998888776543
No 248
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=52.40 E-value=22 Score=32.31 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=10.9
Q ss_pred CCCHHHHHHHhcccCC
Q 020847 84 WMEESYIASIFGHTGE 99 (320)
Q Consensus 84 ~~t~~~l~~~f~~~G~ 99 (320)
-++...|.+++..||.
T Consensus 253 ltSsktlhdlyldcgS 268 (572)
T KOG4679|consen 253 LTSSKTLHDLYLDCGS 268 (572)
T ss_pred cccchhHHHHHHhhcc
Confidence 3456677788777774
No 249
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.41 E-value=19 Score=36.93 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=26.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEec
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRN 108 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~ 108 (320)
.++++|--+-..+..+.|+++.+.++...++....|
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 456777777788899999999988886655544444
No 250
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=48.40 E-value=77 Score=24.03 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 180 ~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
|.+|+..|- |.-+..+.+.... ....+-++.+.+.. ...++..|.++.+.|++|.|....
T Consensus 2 e~~lkAa~l--~nf~~f~~WP~~~---~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAYL--YNFAKFIEWPDSA---PSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHHH--HHhHhhccCCCCC---CCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 556666553 4444445554431 22335666666665 445788899999999999998764
No 251
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=45.71 E-value=71 Score=20.82 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=37.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEeec
Q 020847 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 275 ~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~~ 319 (320)
.++.|.++.-.-=...+++..+....|.++.+...++.+.|.|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 567777777766678889999988889999998888889999976
No 252
>PF15258 FAM222A: Protein family of FAM222A
Probab=45.43 E-value=38 Score=31.15 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=9.3
Q ss_pred CCceEEEcCCCCCC
Q 020847 72 GIRSLWIGDLQPWM 85 (320)
Q Consensus 72 ~~~~v~v~nlp~~~ 85 (320)
.+.+|-.+.||.+.
T Consensus 193 PNVTVstStIPLsm 206 (506)
T PF15258_consen 193 PNVTVSTSTIPLSM 206 (506)
T ss_pred CceeeeecccccCc
Confidence 46677777777663
No 253
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=44.21 E-value=91 Score=21.32 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=42.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcc-cC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHH
Q 020847 75 SLWIGDLQPWMEESYIASIFGH-TG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~-~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 134 (320)
.-|.--++..++..++++.++. || .|.+|.....+. ...-|||.+...++|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 4566678899999999999876 55 577777766541 345799999998888877644
No 254
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=43.70 E-value=49 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=24.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 212 GFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 212 afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
|||+|++..+|..|++.+....- +.+++..|-..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCc
Confidence 79999999999999986554433 34455555443
No 255
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=43.36 E-value=22 Score=29.99 Aligned_cols=71 Identities=13% Similarity=0.295 Sum_probs=44.9
Q ss_pred CCCCceEEEcCCCCC------------CCHHHHHHHhcccCCeeEEEEEe-----cCCCCCc-----cCeEE--------
Q 020847 70 SDGIRSLWIGDLQPW------------MEESYIASIFGHTGEFVSGKVIR-----NKQTNFS-----EGYGF-------- 119 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~------------~t~~~l~~~f~~~G~v~~~~~~~-----~~~~~~~-----~g~af-------- 119 (320)
+....+||+.+||-. -+++-|+..|+.||.|..+.|.. ...+|+. .||+|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 344567999998853 36788999999999987776532 2234433 33433
Q ss_pred -EEEcCHHHHHHHHHHhcCCCC
Q 020847 120 -IEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 120 -v~f~~~~~A~~a~~~l~g~~~ 140 (320)
|.|.....-..|+.+|.|+.+
T Consensus 226 yvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchH
Confidence 344444445566667776655
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.04 E-value=27 Score=30.98 Aligned_cols=70 Identities=14% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEEecCCC--CCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQT--NFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~--~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
...+.|.|..||...++++|.+-...+-. +....+.....+ ..-.+.|||.|...++.....+.++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45678999999999999999887665432 211222211000 12367899999999999888888888775
No 257
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=41.86 E-value=10 Score=34.60 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.6
Q ss_pred EEcCCCCCCCHHHH
Q 020847 77 WIGDLQPWMEESYI 90 (320)
Q Consensus 77 ~v~nlp~~~t~~~l 90 (320)
-|+..++..+.+.+
T Consensus 165 ~vr~~~P~~~t~q~ 178 (775)
T KOG1151|consen 165 SVRLAKPRLDTEQL 178 (775)
T ss_pred ccccCCCccCchhh
Confidence 34555555444443
No 258
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=2.5e+02 Score=24.78 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=35.7
Q ss_pred CCceEEEcCCCCCCCHHHHHH-----------HhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc
Q 020847 72 GIRSLWIGDLQPWMEESYIAS-----------IFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~-----------~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 136 (320)
..+.|.| |+.+--|..+|+- +.++|| ...++.++.|.... .+.-.+...-..|+..|-
T Consensus 63 krrAvLi-GINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s------~~~~PT~~Nir~Al~wLV 132 (362)
T KOG1546|consen 63 KRRAVLI-GINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDES------PVRIPTGKNIRRALRWLV 132 (362)
T ss_pred cceEEEE-eecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCc------ccccCcHHHHHHHHHHHH
Confidence 3345666 5888888888763 347888 45667777774321 122355666777776554
No 259
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=41.50 E-value=98 Score=28.43 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=11.1
Q ss_pred HHHHHHhccCC-CEEEEEecC
Q 020847 289 DILKTVFGQYG-ELVHVKIPA 308 (320)
Q Consensus 289 ~~L~~~f~~~G-~i~~v~i~~ 308 (320)
+-||++|.-|- .|.-|-|..
T Consensus 534 dLvKELFKvYKTRIWmCAi~~ 554 (572)
T KOG4679|consen 534 DLVKELFKVYKTRIWMCAIPN 554 (572)
T ss_pred HHHHHHHHHhhheeEEEecCC
Confidence 45567776663 454555543
No 260
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.28 E-value=38 Score=22.25 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=24.1
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 211 YGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 211 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
+.+|.|.+..+|.+|-+.|....+..+.+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 68999999999999999888776655544
No 261
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=40.44 E-value=21 Score=32.74 Aligned_cols=14 Identities=7% Similarity=-0.211 Sum_probs=7.1
Q ss_pred ceEEecCCCCCCCH
Q 020847 167 FTIFVGDLAADVTD 180 (320)
Q Consensus 167 ~~l~v~nl~~~~t~ 180 (320)
+..++-++|..++-
T Consensus 389 nifrrpeep~~ltl 402 (775)
T KOG1151|consen 389 NIFRRPEEPETLTL 402 (775)
T ss_pred ccccCCCCcccccH
Confidence 34445555555553
No 262
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=39.31 E-value=1.4e+02 Score=28.40 Aligned_cols=95 Identities=9% Similarity=0.129 Sum_probs=55.3
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccCCcceE-E--ccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCC
Q 020847 211 YGFVRFGDESEQLRSMTEMNGVLCSTRPMR-I--GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287 (320)
Q Consensus 211 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~-v--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 287 (320)
-||+++.+...-+--.++|+...+.+-.|+ | +|+-+-+...-.-..+ .+..--.+........+|+.+|+.++.
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK---~~HqIFlEPEGl~~~evY~nGlSTSlP 314 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADK---ERHQIFLEPEGLDTDEVYPNGLSTSLP 314 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCC---ccceEEecCCCCCCceEecCcccccCC
Confidence 589999999888777778887666554443 1 1111111110000000 011111223445678899999999998
Q ss_pred HHHHHHHhccCCCEEEEEecC
Q 020847 288 DDILKTVFGQYGELVHVKIPA 308 (320)
Q Consensus 288 ~~~L~~~f~~~G~i~~v~i~~ 308 (320)
++-=.++....-..+++.|.+
T Consensus 315 ~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 315 EDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHHHhCcccccceeec
Confidence 876666666666667777765
No 263
>PF14893 PNMA: PNMA
Probab=38.99 E-value=39 Score=29.79 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR-TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
..+.|.|.+||.++++++|.+.+....-.+-..+++... .......-|+|+|...-+-...=..+-| .|..-+|-|
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~Vv~ 93 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPREIPG---KGGPWRVVF 93 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchhcCC---CCCceEEEe
Confidence 445899999999999999999887633233333332210 0011233688888765443222222222 345556555
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
-.+.
T Consensus 94 ~p~~ 97 (331)
T PF14893_consen 94 KPPA 97 (331)
T ss_pred cCCC
Confidence 4443
No 264
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.30 E-value=55 Score=22.23 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 208 SKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 208 ~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.+||-||+=.+..+...|++.+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 69999999999999999997765543
No 265
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=37.11 E-value=27 Score=28.85 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEe
Q 020847 270 NDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI 306 (320)
Q Consensus 270 ~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i 306 (320)
......+||+-|+|...|++-|+.+.+..|.+..+.+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3445688999999999999999999999997776655
No 266
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=35.74 E-value=72 Score=20.85 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 181 YVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 181 ~~l~~~f~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
++|.+.|.. .| .+..+.-+....++.+-..-+|+.....+-.. -|+=+.++|+.+.|+....+
T Consensus 2 ~~I~~~L~~-~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKD-IGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHH-cCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 467788887 55 57888777776666666777887765533222 34556678888888876544
No 267
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.62 E-value=53 Score=20.98 Aligned_cols=37 Identities=11% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCCCcCC-HHHHHHHhccCC-CEEEEEecCCccEEEEEe
Q 020847 281 GLDPSVT-DDILKTVFGQYG-ELVHVKIPAGKRCGFVQF 317 (320)
Q Consensus 281 nl~~~~~-~~~L~~~f~~~G-~i~~v~i~~~~~~afV~F 317 (320)
|-|..+. --||....-.|| .|++-++..+.+.|||.|
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~ 44 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVF 44 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEE
Confidence 3444443 356666666788 556667777778999988
No 268
>PRK10263 DNA translocase FtsK; Provisional
Probab=35.56 E-value=31 Score=36.22 Aligned_cols=13 Identities=8% Similarity=0.049 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHh
Q 020847 217 GDESEQLRSMTEM 229 (320)
Q Consensus 217 ~~~~~A~~A~~~l 229 (320)
.+.++|.++|+.+
T Consensus 1070 tD~eka~~aLr~l 1082 (1355)
T PRK10263 1070 TDMKDAANALRWC 1082 (1355)
T ss_pred cCHHHHHHHHHHH
Confidence 4566777776644
No 269
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.39 E-value=69 Score=21.77 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc
Q 020847 100 FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (320)
Q Consensus 100 v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 136 (320)
|.++....+ .+||-||+=.+..++..|++.+.
T Consensus 34 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~ 65 (84)
T PF03439_consen 34 IYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIR 65 (84)
T ss_dssp --EEEE-TT-----STSEEEEEESSHHHHHHHHTT-T
T ss_pred eEEEEEeCC-----CceEEEEEeCCHHHHHHHHhccc
Confidence 555554433 69999999999999999996543
No 270
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=35.26 E-value=1.6e+02 Score=20.83 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecCC--CCCcceEEEEE-eCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRT--TGRSKGYGFVR-FGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~~--~~~~~g~afV~-f~~~~~A~~ 224 (320)
...+..||++-+.+.|+.-.+..++.... .|..+..||+. |++.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~IYds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKVYDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEEECCHHHHHh
Confidence 36788899988888787654555544322 24444444444 555555443
No 271
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=35.17 E-value=60 Score=29.14 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=34.3
Q ss_pred CCCCCCCccEEEEcCCCC-cCCHHHHHHHhccC----CCEEEEEecC
Q 020847 267 QGENDPNNTTIFVGGLDP-SVTDDILKTVFGQY----GELVHVKIPA 308 (320)
Q Consensus 267 ~~~~~~~~~~l~v~nl~~-~~~~~~L~~~f~~~----G~i~~v~i~~ 308 (320)
......++..|-|-|+++ .+...||..+|+.| |.|..|.|.+
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 344567788999999998 57889999999876 8899999854
No 272
>PRK10263 DNA translocase FtsK; Provisional
Probab=35.13 E-value=34 Score=35.87 Aligned_cols=10 Identities=0% Similarity=-0.037 Sum_probs=7.1
Q ss_pred HHHHhcccCC
Q 020847 90 IASIFGHTGE 99 (320)
Q Consensus 90 l~~~f~~~G~ 99 (320)
|++.|..||.
T Consensus 894 l~~~L~~F~i 903 (1355)
T PRK10263 894 VEARLADFRI 903 (1355)
T ss_pred HHHHHHHCCc
Confidence 5667888873
No 273
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.97 E-value=63 Score=25.57 Aligned_cols=58 Identities=14% Similarity=-0.009 Sum_probs=37.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCC-CCCccCeEEEEEcCHHHHHHHHHH
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ-TNFSEGYGFIEFVSHAAAERVLQT 134 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~~~~~g~afv~f~~~~~A~~a~~~ 134 (320)
.+++|.. +.+...++|..+-+ |.+..+.+.+... ....+|-.||.|.+.+.|.+.++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3556665 33334444444444 6777776655421 124689999999999999998854
No 274
>PRK10905 cell division protein DamX; Validated
Probab=34.96 E-value=1.3e+02 Score=26.28 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=37.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhcC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFV--RFGDESEQLRSMTEMNG 231 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~A~~~l~g 231 (320)
..+|-|+.+ .+++.|+++..+ .| +....+.....+|+.. |..+ .|.+.++|.+|+..|-.
T Consensus 247 ~YTLQL~A~---Ss~~~l~~fakK-lg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 247 HYTLQLSSS---SNYDNLNGWAKK-EN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred ceEEEEEec---CCHHHHHHHHHH-cC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCH
Confidence 456666544 455777788776 54 3444444433344433 4433 49999999999998754
No 275
>PRK10905 cell division protein DamX; Validated
Probab=34.63 E-value=63 Score=28.15 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEE--EEEcCHHHHHHHHHHhc
Q 020847 83 PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGF--IEFVSHAAAERVLQTFN 136 (320)
Q Consensus 83 ~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af--v~f~~~~~A~~a~~~l~ 136 (320)
-..+++.|++|.++.| +....++....+|. ..|.. =.|.+.++|++|+..|-
T Consensus 254 A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGk-pWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 254 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQ-PWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred ecCCHHHHHHHHHHcC-CCceEEEEeccCCc-eEEEEEecCCCCHHHHHHHHHHCC
Confidence 3456788888888876 44444555433443 13333 35899999999998764
No 276
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=34.53 E-value=87 Score=30.74 Aligned_cols=16 Identities=0% Similarity=-0.006 Sum_probs=8.1
Q ss_pred ceEEEEEeCCHHHHHH
Q 020847 209 KGYGFVRFGDESEQLR 224 (320)
Q Consensus 209 ~g~afV~f~~~~~A~~ 224 (320)
++...++|.....+++
T Consensus 604 r~~tLlh~iv~~i~ek 619 (830)
T KOG1923|consen 604 RSMTLLHYIVLTIAEK 619 (830)
T ss_pred cceeeeehhhHHHHHh
Confidence 4445555555554444
No 277
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=33.66 E-value=20 Score=28.24 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=44.2
Q ss_pred ceEEEcCCCCCC-----CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 74 RSLWIGDLQPWM-----EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 74 ~~v~v~nlp~~~-----t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
.++.+-+|+..+ ......++|..|.+.....+++ +.+..-|.|.+.+.|..|.-.+++..+.++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 446666666543 2223456677776655555544 367788999999999999999999998655
No 278
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=33.56 E-value=64 Score=31.12 Aligned_cols=16 Identities=0% Similarity=-0.186 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHhhCCC
Q 020847 178 VTDYVLQETFRAVYSS 193 (320)
Q Consensus 178 ~t~~~l~~~f~~~~g~ 193 (320)
..-+||..-+++.+|.
T Consensus 448 ~~VDDIV~eVE~slGr 463 (669)
T PF08549_consen 448 YKVDDIVAEVEKSLGR 463 (669)
T ss_pred ccHHHHHHHHHHHhCC
Confidence 3456666666655665
No 279
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.30 E-value=3.6e+02 Score=24.52 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=28.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCcccC--CcceEEccCC
Q 020847 211 YGFVRFGDESEQLRSMTEMNGVLCS--TRPMRIGPAA 245 (320)
Q Consensus 211 ~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~v~~a~ 245 (320)
||.|++.+...+.....+++|.++. +..+.++|.-
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 8999999999999999999998875 4455665543
No 280
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.98 E-value=50 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 020847 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219 (320)
Q Consensus 180 ~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 219 (320)
-+||...|.+.||.-. .+..+|.|+||+|++.
T Consensus 88 LedL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 88 LEDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHHhccccc--------CCccCCCeeEEehhHH
Confidence 3677777777676421 2234688999999975
No 281
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.56 E-value=1.1e+02 Score=26.66 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=36.8
Q ss_pred EEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHh
Q 020847 118 GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRA 189 (320)
Q Consensus 118 afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 189 (320)
|||.|.+..+|..|++.+....- ..+++..+. +.+.|.=.||.....+..+|..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHHHH
Confidence 79999999999999986543332 223333322 1225666788777777777766654
No 282
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.83 E-value=11 Score=34.06 Aligned_cols=78 Identities=6% Similarity=-0.127 Sum_probs=60.1
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
.+.++..++...++.++.-+|.. ||.|.-+.+......|..+-.+||+-.. ++|..++..+.-..+.|..+++..+..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 35678889999999999999997 9999888776665556666678888664 366777777777777788888777654
No 283
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=30.55 E-value=17 Score=31.61 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCC
Q 020847 87 ESYIASIFGHTGE 99 (320)
Q Consensus 87 ~~~l~~~f~~~G~ 99 (320)
..||++++++-|.
T Consensus 152 S~dlkdilseagt 164 (423)
T PF02166_consen 152 SADLKDILSEAGT 164 (423)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3456666666664
No 284
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=30.46 E-value=52 Score=29.30 Aligned_cols=67 Identities=12% Similarity=0.225 Sum_probs=47.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTT--GRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 234 (320)
..+.|.+||...++++|.+-..+ +.. +....+.....+ ..-.+.|||.|...++...-.+..+|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 47889999999999999988887 543 333333321111 12256799999999998887778888665
No 285
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.21 E-value=41 Score=30.14 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.0
Q ss_pred CHHHHHHHHH
Q 020847 179 TDYVLQETFR 188 (320)
Q Consensus 179 t~~~l~~~f~ 188 (320)
+...|+++..
T Consensus 385 skrkL~el~~ 394 (505)
T COG5624 385 SKRKLEELQH 394 (505)
T ss_pred hhhhHHHHHh
Confidence 3445555544
No 286
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=29.91 E-value=1.3e+02 Score=24.61 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCHHHHH---HHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 84 WMEESYIA---SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 84 ~~t~~~l~---~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
.+++++|+ .....|| | ...++.|..++...-..|+.=.+.+....|++.+....+
T Consensus 38 ~i~~~~lk~F~k~AkKyG-V-~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~ 95 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYG-V-DYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKL 95 (204)
T ss_pred ecCHhhHHHHHHHHHHcC-C-ceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhh
Confidence 34455555 4578898 4 445566665554455666666788888999988776655
No 287
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.75 E-value=3.1e+02 Score=26.47 Aligned_cols=101 Identities=9% Similarity=0.104 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--Cccc------CCcceEEccCCcc
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLC------STRPMRIGPAATK 247 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~------~g~~i~v~~a~~~ 247 (320)
+..-.++|.+.|.. -+.+..|.+.. -||-.+.+....-+......+. +..+ .|++|.|.|+.+.
T Consensus 56 P~eiA~~i~~~l~~-~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN 127 (577)
T COG0018 56 PREIAEEIAEKLDT-DEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN 127 (577)
T ss_pred HHHHHHHHHHhccc-cCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC
Confidence 33344566666664 44567776632 2355555554444444444444 2222 4789999998776
Q ss_pred cccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCC-CEEEEEecCC
Q 020847 248 KAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVKIPAG 309 (320)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G-~i~~v~i~~~ 309 (320)
+..-+.|+++-..+-=+-|..+++..| .|+.....-+
T Consensus 128 -------------------------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 128 -------------------------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred -------------------------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 445699999998888889999998777 7776665444
No 288
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=28.23 E-value=59 Score=22.19 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=17.8
Q ss_pred CceEEecCC-------------CCCCCHHHHHHHHHhhCCC
Q 020847 166 DFTIFVGDL-------------AADVTDYVLQETFRAVYSS 193 (320)
Q Consensus 166 ~~~l~v~nl-------------~~~~t~~~l~~~f~~~~g~ 193 (320)
.+.|||.|. ...-+.+++.+++.. |..
T Consensus 37 ~rEifi~G~~Ae~Fr~~V~~li~~~Pt~EevDdfL~~-y~~ 76 (85)
T PF12091_consen 37 RREIFIDGSWAEMFREDVQALIASEPTQEEVDDFLGG-YDA 76 (85)
T ss_pred CceEEeCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHH
Confidence 346777664 345677888888876 643
No 289
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=27.93 E-value=1.8e+02 Score=23.30 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=34.8
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
.+.-|.+++++ +.|.+.++|.+-+++ +|+.+....|.+.+.++.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEE-EGKLWRETEIKIQSGKPS 79 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHH-hcchheeeeEEEecCCcc
Confidence 45566677774 679999999998864 888888888999888765
No 290
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.75 E-value=2e+02 Score=19.57 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEE----ecCCCCCcceEEEEEeCCHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVV----TDRTTGRSKGYGFVRFGDESEQL 223 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~----~~~~~~~~~g~afV~f~~~~~A~ 223 (320)
...+..||++.+.+.|+.-.+..++ +..-.+.+.|+|.| |++.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~k 61 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALK 61 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHH
Confidence 5667889998888767653333222 22222334455544 55555544
No 291
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.54 E-value=2e+02 Score=20.59 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHH
Q 020847 88 SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVL 132 (320)
Q Consensus 88 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~ 132 (320)
.+|.++++.+| |..-.|.-|..+ +.-||++++.+.+..-+++
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 45677888888 556666655433 4679999999666555555
No 292
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=32 Score=30.76 Aligned_cols=61 Identities=15% Similarity=0.068 Sum_probs=48.5
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHhcc--cCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHH
Q 020847 73 IRSLWIGDLQPWMEES--------YIASIFGH--TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~--------~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~ 133 (320)
.+.+|+.+.....+.+ ++...|.. .++...+...++-....++|..|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567888887766555 89999987 6677777777775566688999999999999999873
No 293
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.98 E-value=54 Score=27.14 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS 102 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~ 102 (320)
......++|+-|+|..+|++.|..+.+.+|-+..
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 3455678999999999999999999999985433
No 294
>KOG3661 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.72 E-value=1.7e+02 Score=28.43 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.3
Q ss_pred CCCCCCCHHHHHHHhcccCC
Q 020847 80 DLQPWMEESYIASIFGHTGE 99 (320)
Q Consensus 80 nlp~~~t~~~l~~~f~~~G~ 99 (320)
++.......+|..+..+.|.
T Consensus 119 ~~nht~~~~~~~ql~Qq~~~ 138 (1019)
T KOG3661|consen 119 DLNHTQQSQMLHQLLQQHGA 138 (1019)
T ss_pred CcccccchHHHHHHHHHhhh
Confidence 45556667778887766653
No 295
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=26.65 E-value=19 Score=37.39 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.6
Q ss_pred eEEEcCCCC
Q 020847 75 SLWIGDLQP 83 (320)
Q Consensus 75 ~v~v~nlp~ 83 (320)
++|--+.+.
T Consensus 413 a~Y~~~a~~ 421 (1973)
T KOG4407|consen 413 ALYAVGAGP 421 (1973)
T ss_pred hhhhcccCC
Confidence 344444433
No 296
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.34 E-value=3e+02 Score=21.07 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=38.7
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
-|+-.++...+..+|+..++..|+. |..|..+.-+ .| ..-|||.+....+|...-
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DG--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CC--ceEEEEEECCCCcHHHHH
Confidence 4444678899999999999987864 6667655543 12 236999998777765443
No 297
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=25.17 E-value=2.1e+02 Score=26.57 Aligned_cols=107 Identities=15% Similarity=0.155 Sum_probs=61.1
Q ss_pred CCHHHHHHHhcccCCe-eEEEEEecCCCCCccCeEEEEE---cCHHHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCC
Q 020847 85 MEESYIASIFGHTGEF-VSGKVIRNKQTNFSEGYGFIEF---VSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERR 160 (320)
Q Consensus 85 ~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afv~f---~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (320)
+..+.+.+.++.|..+ .++..+... .|.-|+.= .+..++..|+..+. ..+
T Consensus 293 v~~e~i~~~L~~F~gl~HR~e~v~~~-----~gv~f~NDSKATN~~At~~AL~~~~-~~v-------------------- 346 (448)
T COG0771 293 VPPEAILEALSSFTGLPHRLEFVGEK-----DGVLFINDSKATNVDATLAALSGFD-GPV-------------------- 346 (448)
T ss_pred CCHHHHHHHHHhCCCCCcceEEEEec-----CCEEEecCCCCCCHHHHHHHHHcCC-CCE--------------------
Confidence 4556777777766543 223333331 23333321 35677777776655 222
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCC------CcceEEEEEeCCHHHHHHHHHH
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTG------RSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~------~~~g~afV~f~~~~~A~~A~~~ 228 (320)
.+.+|++++..+-+.|.++|.+ . +..+.++-. ... ...+..++.+.+.++|......
T Consensus 347 -------~lI~GG~~Kg~df~~L~~~~~~-~--~~~~~~~G~-~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~ 409 (448)
T COG0771 347 -------ILIAGGDDKGADFSPLAEILAK-V--IKKLVLIGE-DAEKIAAALKEAGPSLVICETLEEAVQLARE 409 (448)
T ss_pred -------EEEECCCCCCCChhHHHHHhhh-c--ceEEEEeCC-CHHHHHHHHHhcCCceeecCcHHHHHHHHHH
Confidence 7889999999999999999986 3 333433321 100 0112227777777777665543
No 298
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.56 E-value=54 Score=18.34 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=9.5
Q ss_pred cCCHHHHHHHhccCC
Q 020847 285 SVTDDILKTVFGQYG 299 (320)
Q Consensus 285 ~~~~~~L~~~f~~~G 299 (320)
.++++.|++.|...+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578899999998654
No 299
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=24.00 E-value=1.5e+02 Score=20.74 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.|++|++..-...|+-+++|-|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46778776654568889999999987
No 300
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.99 E-value=35 Score=30.52 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=48.9
Q ss_pred CceEEecCCCCCCCHH--------HHHHHHHhh-CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 166 DFTIFVGDLAADVTDY--------VLQETFRAV-YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~--------~l~~~f~~~-~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
.+.+|+.+++...+.+ ++...|..+ .+.+..+...++......+|..|++|...+.|.++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4578888887765544 899999863 4667778887776577788999999999999999874
No 301
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.89 E-value=59 Score=18.20 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=14.9
Q ss_pred cCCHHHHHHHhccCCCEE
Q 020847 285 SVTDDILKTVFGQYGELV 302 (320)
Q Consensus 285 ~~~~~~L~~~f~~~G~i~ 302 (320)
.+++++|++.+..+|.+.
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578899999999998654
No 302
>PHA01632 hypothetical protein
Probab=23.78 E-value=91 Score=19.24 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.0
Q ss_pred EEEEcCCCCcCCHHHHHHHhcc
Q 020847 276 TIFVGGLDPSVTDDILKTVFGQ 297 (320)
Q Consensus 276 ~l~v~nl~~~~~~~~L~~~f~~ 297 (320)
.|.|..+|..-|+++|+.++..
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 4667889999999999987753
No 303
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.69 E-value=1.9e+02 Score=19.91 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=30.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEE
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEF 122 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f 122 (320)
.-||||+++..+-|.-...+.+..+.=.-+-+..+. + ..||+|-..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~ 71 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTL 71 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEe
Confidence 449999999888877666666655544333333332 2 678888776
No 304
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=23.62 E-value=2.3e+02 Score=21.86 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=39.0
Q ss_pred eEEecCCCC-CCCHHHHHHHHHhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 168 TIFVGDLAA-DVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 168 ~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
..|.|+|.. ..+-++|+..+...|+...+ +..-+. ...+-+.|+|.-+.+|..-++.|-
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~~----~~~~sv~V~f~ipreaa~~Lr~LA 66 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRKV----EPWNSVRVTFSIPREAATRLRQLA 66 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeecc----ccCceEEEEEechHHHHHHHHHHh
Confidence 456788872 34556777777776655433 333222 235579999999999998888763
No 305
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.44 E-value=1.8e+02 Score=19.87 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=20.5
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.|.+|+|..-...|+.+++|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 36778887765568899999999987
No 306
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=22.38 E-value=29 Score=30.21 Aligned_cols=7 Identities=43% Similarity=1.070 Sum_probs=0.0
Q ss_pred cCCCEEE
Q 020847 297 QYGELVH 303 (320)
Q Consensus 297 ~~G~i~~ 303 (320)
+||++-+
T Consensus 381 RYgdl~s 387 (423)
T PF02166_consen 381 RYGDLAS 387 (423)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4554443
No 307
>PF06099 Phenol_hyd_sub: Phenol hydroxylase subunit; InterPro: IPR010353 This family consists of several bacterial phenol hydroxylase subunit proteins, which are part of a multicomponent phenol hydroxylase. Some bacteria can utilise phenol or some of its methylated derivatives as their sole source of carbon and energy. The first step in this process is the conversion of phenol into catechol. Catechol is then further metabolised via the meta-cleavage pathway into TCA cycle intermediates [].
Probab=22.12 E-value=69 Score=20.17 Aligned_cols=16 Identities=31% Similarity=0.656 Sum_probs=11.4
Q ss_pred EEEecCCccEEEEEee
Q 020847 303 HVKIPAGKRCGFVQFA 318 (320)
Q Consensus 303 ~v~i~~~~~~afV~F~ 318 (320)
.|++...+.-+||+|+
T Consensus 11 yVRv~~~~~~gfVEFe 26 (59)
T PF06099_consen 11 YVRVTGRRDDGFVEFE 26 (59)
T ss_pred EEEEecccCCCeEEEE
Confidence 4666555778899885
No 308
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=22.10 E-value=1.7e+02 Score=18.90 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=25.9
Q ss_pred cCCCCcCCHHHHHHHhcc--CCCEEEEEecCCccEE-EEEeec
Q 020847 280 GGLDPSVTDDILKTVFGQ--YGELVHVKIPAGKRCG-FVQFAN 319 (320)
Q Consensus 280 ~nl~~~~~~~~L~~~f~~--~G~i~~v~i~~~~~~a-fV~F~~ 319 (320)
.-+-..++. +|.+.... .|.|+..++.-+.|.| .|+|+|
T Consensus 10 ~~irDRi~~-~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~n 51 (64)
T PF11061_consen 10 SRIRDRIPK-ELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSN 51 (64)
T ss_pred hhhhhhccH-HHHHHhccCCcEEEEEEEEecCCcEEEEEEecC
Confidence 334444444 45555555 8999999999888965 566665
No 309
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.85 E-value=1.2e+02 Score=19.41 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=22.3
Q ss_pred CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEE
Q 020847 179 TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFV 214 (320)
Q Consensus 179 t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV 214 (320)
-+.+|...|-+ -..|+++.|...+ ...+|-|||
T Consensus 31 ~e~eler~fl~-~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLP-LPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccC-CCCceEEEEEEEE--eeeCCceeE
Confidence 35667777776 6789998887664 333556665
No 310
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=20.54 E-value=2.3e+02 Score=29.98 Aligned_cols=11 Identities=9% Similarity=0.386 Sum_probs=7.4
Q ss_pred HHHHHHHhccc
Q 020847 87 ESYIASIFGHT 97 (320)
Q Consensus 87 ~~~l~~~f~~~ 97 (320)
.+.|.++|...
T Consensus 1134 SdsvmnlfkD~ 1144 (2238)
T KOG3600|consen 1134 SDSVMNLFKDS 1144 (2238)
T ss_pred hhHHHHHHhcc
Confidence 56677887654
No 311
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=20.52 E-value=1.4e+02 Score=28.98 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=8.4
Q ss_pred eEEEcCCCCCCCHHHH
Q 020847 75 SLWIGDLQPWMEESYI 90 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l 90 (320)
.|--|.+=..+|..||
T Consensus 273 dvS~GD~~D~lTPReI 288 (669)
T PF08549_consen 273 DVSRGDMFDHLTPREI 288 (669)
T ss_pred hcccccccccCCHHHH
Confidence 3444555555665554
No 312
>PF14893 PNMA: PNMA
Probab=20.34 E-value=70 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhc
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFG 95 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~ 95 (320)
+..+.|.|.|||.++++++|.+.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHH
Confidence 4567799999999999999988764
No 313
>CHL00030 rpl23 ribosomal protein L23
Probab=20.19 E-value=3.2e+02 Score=19.11 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=25.9
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEec
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTD 202 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~ 202 (320)
-|+=-++.+.+..+|++.++..||. |..|..+.-
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4455678899999999999987875 677766554
No 314
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=20.13 E-value=3.4e+02 Score=19.52 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecCC--CCCcceEEEEE-eCCHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRT--TGRSKGYGFVR-FGDESEQL 223 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~~--~~~~~g~afV~-f~~~~~A~ 223 (320)
.+.+..||++.+...+|.-.+..++.... .|..+.-||+. |.|.+.|.
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~ 80 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKIYDSVERAK 80 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence 45688999999988788766555554422 24333344444 55555544
Done!