Query 020847
Match_columns 320
No_of_seqs 247 out of 3094
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.5E-43 1.9E-47 301.3 25.0 209 72-319 21-235 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-42 6.1E-47 299.2 22.6 221 66-319 34-263 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.2E-37 4.1E-42 256.3 17.1 173 71-251 13-185 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 6.5E-36 2.2E-40 236.5 19.5 166 74-246 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.3E-35 4.5E-40 235.2 19.8 165 72-244 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 1.3E-35 4.5E-40 244.9 19.8 177 71-250 26-208 (216)
7 1fxl_A Paraneoplastic encephal 100.0 2.4E-35 8.3E-40 233.4 20.0 164 73-244 2-167 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 1.7E-35 5.9E-40 240.6 19.3 178 69-251 9-187 (196)
9 3nmr_A Cugbp ELAV-like family 100.0 9.1E-35 3.1E-39 231.9 20.9 168 72-245 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 1.5E-35 5.1E-40 234.7 12.3 165 72-247 2-166 (167)
11 2g4b_A Splicing factor U2AF 65 100.0 2.8E-33 9.6E-38 222.7 17.9 160 71-245 2-172 (172)
12 3tyt_A Heterogeneous nuclear r 100.0 5.3E-33 1.8E-37 226.3 17.7 163 72-244 3-204 (205)
13 2yh0_A Splicing factor U2AF 65 100.0 6.9E-33 2.3E-37 225.5 17.8 169 71-249 2-196 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 1.1E-33 3.7E-38 225.8 11.7 166 69-247 9-174 (175)
15 3smz_A Protein raver-1, ribonu 100.0 1.8E-32 6.2E-37 235.6 19.9 174 72-251 94-268 (284)
16 3pgw_A U1-A; protein-RNA compl 100.0 3.9E-32 1.3E-36 233.2 21.0 165 70-245 6-281 (282)
17 2adc_A Polypyrimidine tract-bi 100.0 5E-32 1.7E-36 225.3 20.0 165 70-247 31-228 (229)
18 2ghp_A U4/U6 snRNA-associated 100.0 2.8E-32 9.7E-37 235.3 15.9 171 72-247 116-291 (292)
19 1qm9_A Polypyrimidine tract-bi 100.0 9E-32 3.1E-36 219.0 16.4 163 72-247 2-197 (198)
20 3sde_A Paraspeckle component 1 100.0 3.4E-31 1.2E-35 224.6 19.7 160 69-249 18-181 (261)
21 4f02_A Polyadenylate-binding p 100.0 2.9E-30 9.8E-35 212.3 16.3 137 163-319 12-152 (213)
22 1fxl_A Paraneoplastic encephal 100.0 4.6E-29 1.6E-33 197.2 17.4 132 166-319 2-139 (167)
23 1l3k_A Heterogeneous nuclear r 100.0 2.7E-29 9.3E-34 203.9 16.4 141 162-319 9-155 (196)
24 1b7f_A Protein (SXL-lethal pro 100.0 3E-29 1E-33 198.5 15.9 133 165-319 2-140 (168)
25 3md3_A Nuclear and cytoplasmic 100.0 1.7E-28 5.7E-33 193.7 15.5 132 167-319 1-138 (166)
26 2qfj_A FBP-interacting repress 100.0 9.6E-29 3.3E-33 203.8 14.6 143 166-319 28-176 (216)
27 3nmr_A Cugbp ELAV-like family 100.0 3.3E-28 1.1E-32 193.8 16.7 134 165-319 2-145 (175)
28 3tyt_A Heterogeneous nuclear r 100.0 3.2E-28 1.1E-32 198.1 13.1 149 165-319 3-174 (205)
29 2cjk_A Nuclear polyadenylated 100.0 3.1E-28 1.1E-32 192.5 10.3 131 165-319 2-138 (167)
30 3pgw_A U1-A; protein-RNA compl 99.9 3.9E-27 1.3E-31 202.1 17.1 154 162-319 5-253 (282)
31 2adc_A Polypyrimidine tract-bi 99.9 6.1E-27 2.1E-31 194.6 17.3 153 161-319 29-198 (229)
32 1qm9_A Polypyrimidine tract-bi 99.9 1.4E-26 4.9E-31 188.2 14.0 148 166-319 3-167 (198)
33 2g4b_A Splicing factor U2AF 65 99.9 2.5E-26 8.5E-31 182.4 14.2 127 165-320 3-146 (172)
34 3sde_A Paraspeckle component 1 99.9 3.2E-26 1.1E-30 193.9 15.0 123 163-319 19-146 (261)
35 1fje_B Nucleolin RBD12, protei 99.9 4.7E-27 1.6E-31 187.2 8.8 136 162-319 9-145 (175)
36 2yh0_A Splicing factor U2AF 65 99.9 7.1E-26 2.4E-30 184.0 15.7 147 165-320 3-166 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 6.7E-25 2.3E-29 171.7 13.9 146 102-250 2-153 (158)
38 4f25_A Polyadenylate-binding p 99.9 3.6E-24 1.2E-28 158.0 10.3 109 166-290 5-113 (115)
39 2i2y_A Fusion protein consists 99.9 5.3E-23 1.8E-27 159.3 11.8 128 112-248 10-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-22 7.3E-27 144.0 11.0 80 166-246 19-98 (99)
41 4f25_A Polyadenylate-binding p 99.9 4.7E-22 1.6E-26 146.6 9.2 107 72-182 4-113 (115)
42 2lxi_A RNA-binding protein 10; 99.9 3.5E-22 1.2E-26 140.7 5.8 85 166-251 1-87 (91)
43 2lea_A Serine/arginine-rich sp 99.9 5.6E-22 1.9E-26 150.2 7.1 127 115-250 4-130 (135)
44 3s8s_A Histone-lysine N-methyl 99.9 3.6E-21 1.2E-25 140.3 10.7 87 164-251 4-90 (110)
45 2lkz_A RNA-binding protein 5; 99.8 1.9E-21 6.4E-26 137.5 6.4 80 166-246 9-94 (95)
46 1u6f_A Tcubp1, RNA-binding pro 99.8 1.7E-20 5.7E-25 143.3 11.4 85 70-156 39-123 (139)
47 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-20 4.5E-25 148.0 10.9 130 120-250 11-155 (165)
48 3md1_A Nuclear and cytoplasmic 99.8 2.4E-20 8.1E-25 129.2 10.9 81 167-248 2-82 (83)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-20 6.7E-25 130.9 10.3 83 164-247 4-86 (87)
50 3lqv_A PRE-mRNA branch site pr 99.8 9.8E-21 3.3E-25 139.7 9.1 104 164-300 6-109 (115)
51 3p5t_L Cleavage and polyadenyl 99.8 8.1E-21 2.8E-25 133.6 8.3 82 167-249 2-85 (90)
52 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-20 5.7E-25 134.1 9.4 82 71-154 17-98 (99)
53 2dgo_A Cytotoxic granule-assoc 99.8 8.2E-20 2.8E-24 134.7 13.3 91 160-251 9-99 (115)
54 2x1f_A MRNA 3'-END-processing 99.8 3E-20 1E-24 132.5 10.2 86 165-251 1-86 (96)
55 2cqc_A Arginine/serine-rich sp 99.8 5.9E-20 2E-24 130.7 11.7 86 160-246 9-94 (95)
56 2jrs_A RNA-binding protein 39; 99.8 8.5E-20 2.9E-24 132.8 12.7 87 161-248 21-107 (108)
57 2dnz_A Probable RNA-binding pr 99.8 6.5E-20 2.2E-24 130.5 11.3 86 164-250 3-88 (95)
58 2do4_A Squamous cell carcinoma 99.8 1E-19 3.6E-24 130.6 12.5 86 162-249 13-98 (100)
59 2cq0_A Eukaryotic translation 99.8 4.9E-20 1.7E-24 133.1 10.7 90 160-250 9-98 (103)
60 2cpz_A CUG triplet repeat RNA- 99.8 7E-20 2.4E-24 135.1 11.6 89 161-250 20-108 (115)
61 1whw_A Hypothetical protein ri 99.8 5.1E-20 1.7E-24 132.0 10.5 87 163-250 5-91 (99)
62 2dgs_A DAZ-associated protein 99.8 7.2E-20 2.5E-24 131.2 11.2 87 162-250 6-92 (99)
63 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.9E-20 1.3E-24 128.8 9.5 81 164-245 5-85 (85)
64 1p27_B RNA-binding protein 8A; 99.8 7.3E-20 2.5E-24 133.0 11.3 85 163-248 20-104 (106)
65 1x5u_A Splicing factor 3B subu 99.8 6.9E-20 2.4E-24 132.8 10.9 89 161-250 10-98 (105)
66 3ns6_A Eukaryotic translation 99.8 1.2E-20 4.2E-25 135.3 6.5 85 164-249 4-95 (100)
67 2kxn_B Transformer-2 protein h 99.8 9.3E-20 3.2E-24 136.8 11.6 87 161-248 41-127 (129)
68 2dnm_A SRP46 splicing factor; 99.8 5E-20 1.7E-24 133.1 9.6 89 161-250 8-96 (103)
69 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5E-24 129.6 11.9 83 162-245 9-99 (99)
70 2e5h_A Zinc finger CCHC-type a 99.8 8E-20 2.7E-24 129.7 10.5 84 161-245 11-94 (94)
71 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.6E-20 1.9E-24 132.6 9.5 88 163-251 9-96 (102)
72 2dnh_A Bruno-like 5, RNA bindi 99.8 2E-19 6.7E-24 130.4 12.4 87 162-250 11-100 (105)
73 1x5s_A Cold-inducible RNA-bind 99.8 8.9E-20 3.1E-24 131.5 10.4 88 162-250 8-95 (102)
74 2cph_A RNA binding motif prote 99.8 1.5E-19 5E-24 131.6 11.4 90 161-251 10-101 (107)
75 1x5t_A Splicing factor 3B subu 99.8 6E-20 2E-24 130.9 8.9 86 164-250 3-89 (96)
76 2d9p_A Polyadenylate-binding p 99.8 1.8E-19 6E-24 130.2 11.3 88 161-251 10-97 (103)
77 2dgp_A Bruno-like 4, RNA bindi 99.8 1.2E-19 4.1E-24 131.8 10.4 89 161-250 8-99 (106)
78 1x4h_A RNA-binding protein 28; 99.8 1.9E-19 6.5E-24 131.9 11.4 89 161-250 10-104 (111)
79 2div_A TRNA selenocysteine ass 99.8 1.5E-19 5.2E-24 129.5 10.7 84 164-248 7-95 (99)
80 2cpf_A RNA binding motif prote 99.8 1E-19 3.6E-24 130.1 9.8 86 164-250 3-91 (98)
81 2hvz_A Splicing factor, argini 99.8 8.3E-20 2.8E-24 131.4 9.2 100 167-283 1-100 (101)
82 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4.3E-24 132.6 9.8 86 162-248 22-107 (110)
83 2fy1_A RNA-binding motif prote 99.8 2.2E-19 7.4E-24 132.3 10.9 85 164-250 5-89 (116)
84 3n9u_C Cleavage and polyadenyl 99.8 1.3E-19 4.5E-24 140.3 9.9 84 165-249 54-139 (156)
85 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.6E-24 128.7 9.6 82 163-251 13-96 (105)
86 2dng_A Eukaryotic translation 99.8 3.3E-19 1.1E-23 128.8 11.1 87 161-250 10-96 (103)
87 2ywk_A Putative RNA-binding pr 99.8 2.3E-19 7.9E-24 127.6 10.1 83 162-246 12-94 (95)
88 1u6f_A Tcubp1, RNA-binding pro 99.8 3.3E-19 1.1E-23 136.1 11.5 88 162-250 38-125 (139)
89 2cpe_A RNA-binding protein EWS 99.8 2.7E-19 9.1E-24 131.5 10.6 89 161-250 10-106 (113)
90 3r27_A HnRNP L, heterogeneous 99.8 2.3E-19 8E-24 126.6 9.4 80 162-248 17-98 (100)
91 2cqp_A RNA-binding protein 12; 99.8 2E-19 6.9E-24 128.6 9.3 85 162-247 11-95 (98)
92 2khc_A Testis-specific RNP-typ 99.8 1.5E-19 5.1E-24 133.9 8.8 84 161-245 35-118 (118)
93 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.7E-24 126.4 8.5 83 165-248 3-86 (88)
94 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-19 9.4E-24 129.4 9.9 86 162-250 11-97 (104)
95 1p1t_A Cleavage stimulation fa 99.8 2.2E-19 7.5E-24 129.9 9.3 85 166-251 8-92 (104)
96 3ucg_A Polyadenylate-binding p 99.8 3.4E-19 1.1E-23 125.1 9.8 80 166-247 6-85 (89)
97 2dh8_A DAZ-associated protein 99.8 3.2E-19 1.1E-23 129.3 9.9 88 161-250 11-98 (105)
98 2dhg_A TRNA selenocysteine ass 99.8 5.3E-19 1.8E-23 127.9 10.9 88 162-250 5-93 (104)
99 1s79_A Lupus LA protein; RRM, 99.8 2.8E-19 9.5E-24 128.5 9.3 81 164-247 9-89 (103)
100 3ulh_A THO complex subunit 4; 99.8 5.7E-19 2E-23 128.4 11.0 82 162-245 25-106 (107)
101 1x4e_A RNA binding motif, sing 99.8 1.1E-19 3.6E-24 126.5 6.8 82 164-246 3-84 (85)
102 2m2b_A RNA-binding protein 10; 99.8 9.9E-20 3.4E-24 137.4 7.1 88 161-250 18-111 (131)
103 2cqi_A Nucleolysin TIAR; RNA r 99.8 8.7E-19 3E-23 126.5 11.8 87 161-250 10-96 (103)
104 3s8s_A Histone-lysine N-methyl 99.8 4.2E-19 1.4E-23 129.3 10.1 80 72-153 5-84 (110)
105 2cq3_A RNA-binding protein 9; 99.8 1.1E-18 3.7E-23 126.0 12.3 88 161-251 10-97 (103)
106 2dgv_A HnRNP M, heterogeneous 99.8 6.7E-19 2.3E-23 124.4 10.9 83 164-249 6-88 (92)
107 2dgw_A Probable RNA-binding pr 99.8 7E-19 2.4E-23 124.0 10.8 82 163-248 7-88 (91)
108 2kt5_A RNA and export factor-b 99.8 1.3E-18 4.5E-23 130.0 12.8 86 162-249 31-116 (124)
109 2dis_A Unnamed protein product 99.8 4.6E-19 1.6E-23 129.4 9.8 87 164-251 6-96 (109)
110 2ek1_A RNA-binding protein 12; 99.8 2.3E-19 7.8E-24 127.6 7.8 82 164-246 13-94 (95)
111 3s7r_A Heterogeneous nuclear r 99.8 6.6E-19 2.2E-23 123.0 9.9 81 162-244 7-87 (87)
112 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-19 1.3E-23 120.8 8.3 73 166-245 7-79 (89)
113 2do0_A HnRNP M, heterogeneous 99.8 2E-18 6.8E-23 127.0 12.9 87 162-250 11-97 (114)
114 2mss_A Protein (musashi1); RNA 99.8 2.3E-19 7.8E-24 121.7 7.2 75 168-244 1-75 (75)
115 2ad9_A Polypyrimidine tract-bi 99.8 8.1E-19 2.8E-23 128.3 10.4 84 161-251 26-111 (119)
116 2cqd_A RNA-binding region cont 99.8 7E-19 2.4E-23 129.9 10.3 86 161-248 12-97 (116)
117 2dgx_A KIAA0430 protein; RRM d 99.8 7.6E-19 2.6E-23 125.0 9.9 81 165-249 8-92 (96)
118 2hvz_A Splicing factor, argini 99.8 6.2E-19 2.1E-23 126.8 9.6 95 74-175 1-100 (101)
119 3ex7_B RNA-binding protein 8A; 99.8 6.6E-19 2.2E-23 132.0 10.1 88 162-250 18-105 (126)
120 2khc_A Testis-specific RNP-typ 99.8 2E-18 6.8E-23 127.8 12.5 84 67-152 34-117 (118)
121 2dgs_A DAZ-associated protein 99.8 3.4E-18 1.1E-22 122.5 13.2 85 69-156 6-90 (99)
122 1x5u_A Splicing factor 3B subu 99.8 2.8E-18 9.6E-23 124.3 12.9 87 68-156 10-96 (105)
123 2lkz_A RNA-binding protein 5; 99.8 3E-19 1E-23 126.1 7.5 85 70-154 6-94 (95)
124 2err_A Ataxin-2-binding protei 99.8 5.4E-19 1.8E-23 128.8 9.0 85 160-247 23-107 (109)
125 1wex_A Hypothetical protein (r 99.8 1.2E-18 4E-23 125.2 10.5 83 161-250 10-94 (104)
126 2cqg_A TDP-43, TAR DNA-binding 99.8 2.4E-18 8.1E-23 124.2 12.2 87 161-250 10-96 (103)
127 2cq1_A PTB-like protein L; RRM 99.8 1.2E-18 4.2E-23 124.3 10.4 84 160-250 9-94 (101)
128 2cpz_A CUG triplet repeat RNA- 99.8 3.4E-18 1.2E-22 125.9 12.9 87 68-156 20-106 (115)
129 1x5s_A Cold-inducible RNA-bind 99.8 2.5E-18 8.4E-23 123.9 11.9 86 69-156 8-93 (102)
130 1x4d_A Matrin 3; structural ge 99.8 3.6E-19 1.2E-23 127.0 7.3 82 162-250 11-95 (102)
131 2dgo_A Cytotoxic granule-assoc 99.8 3.8E-18 1.3E-22 125.7 13.0 88 68-157 10-97 (115)
132 2cpi_A CCR4-NOT transcription 99.8 7.9E-19 2.7E-23 128.4 9.2 85 163-248 12-102 (111)
133 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.5E-18 5.2E-23 135.0 11.4 87 163-250 36-122 (156)
134 1x5o_A RNA binding motif, sing 99.8 3E-18 1E-22 126.1 12.3 84 162-247 21-112 (114)
135 3n9u_C Cleavage and polyadenyl 99.8 6E-19 2.1E-23 136.6 8.9 81 71-153 53-135 (156)
136 2dnz_A Probable RNA-binding pr 99.8 4.8E-18 1.6E-22 120.7 12.9 83 71-155 3-85 (95)
137 2cq0_A Eukaryotic translation 99.8 2.4E-18 8E-23 124.2 11.5 88 67-156 9-96 (103)
138 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.1E-19 7.2E-24 128.9 5.9 83 163-248 16-99 (100)
139 2rs2_A Musashi-1, RNA-binding 99.8 7.2E-19 2.5E-23 128.1 8.7 86 162-249 21-106 (109)
140 2dnh_A Bruno-like 5, RNA bindi 99.8 6.1E-18 2.1E-22 122.5 13.6 87 69-156 11-98 (105)
141 1x4a_A Splicing factor, argini 99.8 2.2E-18 7.6E-23 125.7 11.3 85 162-250 18-102 (109)
142 2ki2_A SS-DNA binding protein 99.8 1.5E-19 5.2E-24 127.2 4.8 82 167-250 2-83 (90)
143 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-18 1.2E-22 124.0 12.2 89 68-156 8-97 (106)
144 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-18 4.7E-23 120.8 9.3 81 70-152 4-84 (85)
145 2jrs_A RNA-binding protein 39; 99.8 4.3E-18 1.5E-22 123.7 12.2 84 69-154 22-105 (108)
146 2lxi_A RNA-binding protein 10; 99.8 2.1E-19 7.3E-24 126.4 5.1 81 73-155 1-83 (91)
147 2la6_A RNA-binding protein FUS 99.8 3.4E-18 1.1E-22 122.4 11.5 80 71-152 11-98 (99)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.3E-19 1.5E-23 121.0 6.4 76 167-244 1-76 (77)
149 3lqv_A PRE-mRNA branch site pr 99.8 9.6E-19 3.3E-23 128.9 8.8 104 71-193 6-109 (115)
150 2e5h_A Zinc finger CCHC-type a 99.8 2.4E-18 8.3E-23 122.0 10.6 83 68-152 11-93 (94)
151 1whw_A Hypothetical protein ri 99.8 3.8E-18 1.3E-22 122.2 11.7 85 70-156 5-89 (99)
152 2a3j_A U1 small nuclear ribonu 99.8 1.4E-18 4.7E-23 129.4 9.6 86 162-251 25-114 (127)
153 2cqc_A Arginine/serine-rich sp 99.8 2.4E-18 8.3E-23 122.2 10.4 84 68-153 10-93 (95)
154 2dnm_A SRP46 splicing factor; 99.8 2.9E-18 1E-22 123.7 11.0 85 69-155 9-93 (103)
155 2cph_A RNA binding motif prote 99.8 7.1E-18 2.4E-22 122.6 12.8 87 68-156 10-98 (107)
156 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-18 6.2E-23 120.8 9.2 82 71-154 4-85 (87)
157 2jwn_A Embryonic polyadenylate 99.8 1.8E-18 6.3E-23 129.2 9.7 83 165-249 35-117 (124)
158 2cq4_A RNA binding motif prote 99.8 5.1E-19 1.7E-23 130.2 6.5 84 165-250 24-107 (114)
159 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-18 6.9E-23 131.9 10.0 83 161-244 58-140 (140)
160 2div_A TRNA selenocysteine ass 99.8 2.4E-18 8.1E-23 123.3 9.5 87 69-155 5-94 (99)
161 1x4b_A Heterogeneous nuclear r 99.8 1.7E-18 5.9E-23 127.8 9.0 84 165-250 26-109 (116)
162 2nlw_A Eukaryotic translation 99.8 1.4E-18 4.9E-23 125.7 8.3 83 163-248 12-101 (105)
163 2fc8_A NCL protein; structure 99.8 3.6E-18 1.2E-22 123.0 10.4 86 161-250 10-95 (102)
164 2kxn_B Transformer-2 protein h 99.8 5.3E-18 1.8E-22 127.2 11.6 85 68-154 41-125 (129)
165 3md1_A Nuclear and cytoplasmic 99.8 3.5E-18 1.2E-22 118.2 9.9 80 73-154 1-80 (83)
166 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.6E-23 124.1 9.2 86 69-156 8-93 (102)
167 2hgl_A HNRPF protein, heteroge 99.8 1.1E-18 3.7E-23 131.5 7.8 83 163-248 41-126 (136)
168 1x4h_A RNA-binding protein 28; 99.8 8.5E-18 2.9E-22 123.0 12.4 86 69-156 11-102 (111)
169 1wg5_A Heterogeneous nuclear r 99.8 2.4E-18 8E-23 124.3 9.3 84 162-248 11-95 (104)
170 2cpy_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 128.5 7.3 86 162-250 11-97 (114)
171 2d9p_A Polyadenylate-binding p 99.8 1.2E-17 4.3E-22 120.4 13.0 85 68-156 10-94 (103)
172 3pgw_S U1-70K; protein-RNA com 99.8 1.9E-19 6.6E-24 162.0 4.1 86 163-249 99-184 (437)
173 3p5t_L Cleavage and polyadenyl 99.8 1.1E-18 3.8E-23 122.6 7.1 80 74-155 2-83 (90)
174 2dnq_A RNA-binding protein 4B; 99.8 7.1E-18 2.4E-22 118.5 11.2 79 163-250 5-83 (90)
175 1wez_A HnRNP H', FTP-3, hetero 99.8 2.2E-18 7.4E-23 123.8 8.6 82 163-248 12-93 (102)
176 2cpx_A Hypothetical protein FL 99.8 1.1E-18 3.7E-23 128.7 7.2 87 163-250 22-108 (115)
177 2do4_A Squamous cell carcinoma 99.8 9.1E-18 3.1E-22 120.4 11.9 83 70-155 14-96 (100)
178 1p27_B RNA-binding protein 8A; 99.8 6.2E-18 2.1E-22 122.7 11.0 83 70-154 20-102 (106)
179 1x4e_A RNA binding motif, sing 99.8 2E-18 6.7E-23 120.0 7.9 80 71-152 3-82 (85)
180 2db1_A Heterogeneous nuclear r 99.8 2.2E-18 7.4E-23 127.4 8.4 82 164-248 15-99 (118)
181 1wel_A RNA-binding protein 12; 99.8 9.3E-19 3.2E-23 130.7 6.5 86 163-250 22-107 (124)
182 1why_A Hypothetical protein ri 99.8 7.5E-18 2.6E-22 120.1 10.9 79 163-248 14-94 (97)
183 3ns6_A Eukaryotic translation 99.8 1.9E-18 6.4E-23 123.9 7.8 82 71-153 4-91 (100)
184 2la4_A Nuclear and cytoplasmic 99.8 4.1E-18 1.4E-22 122.5 9.6 76 165-247 26-101 (101)
185 2cpj_A Non-POU domain-containi 99.8 4.7E-18 1.6E-22 121.7 9.8 82 162-250 11-92 (99)
186 2krb_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 120.1 6.3 73 167-242 2-81 (81)
187 2ytc_A PRE-mRNA-splicing facto 99.8 5.3E-18 1.8E-22 117.8 9.8 77 162-245 8-85 (85)
188 2dnn_A RNA-binding protein 12; 99.8 1.8E-18 6.3E-23 125.2 7.6 80 165-248 15-94 (109)
189 2fy1_A RNA-binding motif prote 99.8 1.3E-17 4.3E-22 122.9 12.1 83 70-155 4-86 (116)
190 2m2b_A RNA-binding protein 10; 99.7 5.3E-18 1.8E-22 127.8 10.3 84 69-155 19-108 (131)
191 1x5t_A Splicing factor 3B subu 99.7 4E-18 1.4E-22 121.3 9.1 84 71-156 3-87 (96)
192 2x1f_A MRNA 3'-END-processing 99.7 4.6E-18 1.6E-22 121.0 9.3 81 73-155 2-82 (96)
193 1x4f_A Matrin 3; structural ge 99.7 2.1E-18 7.3E-23 124.7 7.4 82 162-250 21-105 (112)
194 2fc9_A NCL protein; structure 99.7 4.4E-18 1.5E-22 122.3 9.1 84 162-250 11-94 (101)
195 3q2s_C Cleavage and polyadenyl 99.7 2.3E-18 7.9E-23 142.0 8.3 83 165-248 67-151 (229)
196 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-17 4.2E-22 119.0 11.1 80 163-248 16-95 (97)
197 1fj7_A Nucleolin RBD1, protein 99.7 5.6E-19 1.9E-23 127.1 4.0 83 164-249 15-97 (101)
198 1sjq_A Polypyrimidine tract-bi 99.7 8E-18 2.7E-22 120.0 9.9 79 70-156 13-93 (105)
199 2cpf_A RNA binding motif prote 99.7 6.7E-18 2.3E-22 120.7 9.5 84 71-156 3-89 (98)
200 1wi8_A EIF-4B, eukaryotic tran 99.7 1.7E-17 5.6E-22 119.9 11.7 83 70-156 12-95 (104)
201 2hgn_A Heterogeneous nuclear r 99.7 7.1E-19 2.4E-23 132.9 4.6 124 116-249 2-125 (139)
202 2cpe_A RNA-binding protein EWS 99.7 1.2E-17 4.2E-22 122.6 11.1 86 69-156 11-104 (113)
203 2dng_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 119.5 11.8 84 69-156 11-94 (103)
204 2ywk_A Putative RNA-binding pr 99.7 6.5E-18 2.2E-22 120.0 9.2 82 69-153 12-93 (95)
205 1s79_A Lupus LA protein; RRM, 99.7 1E-17 3.6E-22 120.3 10.3 79 70-152 8-86 (103)
206 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-18 4.6E-23 117.8 5.3 75 168-244 1-75 (75)
207 2cq3_A RNA-binding protein 9; 99.7 3.8E-17 1.3E-21 117.8 13.2 86 67-156 9-94 (103)
208 2cqd_A RNA-binding region cont 99.7 1.6E-17 5.5E-22 122.5 11.5 87 66-155 10-96 (116)
209 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-17 8E-22 118.9 12.0 85 68-156 10-94 (103)
210 1oo0_B CG8781-PA, drosophila Y 99.7 7.8E-18 2.7E-22 123.0 9.6 84 70-155 23-106 (110)
211 2jvr_A Nucleolar protein 3; RN 99.7 3.9E-18 1.3E-22 123.8 7.8 79 165-248 27-106 (111)
212 2dhg_A TRNA selenocysteine ass 99.7 2.3E-17 7.9E-22 119.2 11.9 83 70-155 6-90 (104)
213 1x4g_A Nucleolysin TIAR; struc 99.7 9.5E-18 3.3E-22 122.3 9.9 81 163-250 22-102 (109)
214 2jvo_A Nucleolar protein 3; nu 99.7 1E-17 3.4E-22 121.7 9.9 80 161-249 26-105 (108)
215 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-18 5.5E-23 125.9 5.7 83 163-248 8-93 (107)
216 2cqp_A RNA-binding protein 12; 99.7 5.9E-18 2E-22 120.9 8.5 83 69-153 11-93 (98)
217 1wex_A Hypothetical protein (r 99.7 3.9E-17 1.3E-21 117.2 12.8 81 70-156 12-92 (104)
218 2dgt_A RNA-binding protein 30; 99.7 1.6E-17 5.4E-22 117.2 10.5 81 161-250 5-85 (92)
219 1nu4_A U1A RNA binding domain; 99.7 3.2E-18 1.1E-22 122.1 6.8 84 163-250 5-92 (97)
220 2dgv_A HnRNP M, heterogeneous 99.7 2.5E-17 8.7E-22 116.2 11.1 82 70-155 5-86 (92)
221 3s7r_A Heterogeneous nuclear r 99.7 9.9E-18 3.4E-22 117.0 8.8 80 69-151 7-86 (87)
222 2j76_E EIF-4B, EIF4B, eukaryot 99.7 5.9E-18 2E-22 121.3 7.8 81 70-154 16-97 (100)
223 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.8E-22 117.7 10.4 77 162-247 18-95 (97)
224 1x5o_A RNA binding motif, sing 99.7 1E-16 3.6E-21 117.8 14.6 85 69-154 21-111 (114)
225 1x4c_A Splicing factor, argini 99.7 2.3E-17 7.7E-22 120.0 10.8 79 164-250 13-96 (108)
226 2do0_A HnRNP M, heterogeneous 99.7 5.6E-17 1.9E-21 119.2 12.7 83 69-154 11-93 (114)
227 2lcw_A RNA-binding protein FUS 99.6 2.6E-19 9E-24 132.1 0.0 86 164-250 5-98 (116)
228 1x4d_A Matrin 3; structural ge 99.7 2.3E-17 7.9E-22 117.6 10.1 80 70-155 12-92 (102)
229 2cq4_A RNA binding motif prote 99.7 7.8E-18 2.7E-22 123.8 7.7 82 69-153 21-102 (114)
230 2dh8_A DAZ-associated protein 99.7 2E-17 6.7E-22 119.8 9.7 86 68-156 11-96 (105)
231 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-17 9.5E-22 118.0 10.3 82 69-155 11-92 (102)
232 2dgu_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 118.9 9.9 80 163-251 8-87 (103)
233 1whx_A Hypothetical protein ri 99.7 7.6E-18 2.6E-22 123.0 7.4 77 165-248 9-85 (111)
234 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-17 4.7E-22 121.3 8.7 84 69-155 21-104 (109)
235 3ex7_B RNA-binding protein 8A; 99.7 2.9E-17 9.8E-22 123.0 10.6 84 70-155 19-102 (126)
236 3r27_A HnRNP L, heterogeneous 99.7 1.9E-17 6.5E-22 116.8 8.9 79 70-154 18-96 (100)
237 2mss_A Protein (musashi1); RNA 99.7 9.3E-18 3.2E-22 113.7 7.1 74 75-151 1-74 (75)
238 3ucg_A Polyadenylate-binding p 99.7 2E-17 6.9E-22 115.9 9.1 80 72-154 5-84 (89)
239 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3.4E-17 1.2E-21 125.0 11.0 84 67-152 57-140 (140)
240 2cpd_A Apobec-1 stimulating pr 99.7 5.1E-17 1.7E-21 116.2 11.2 79 162-249 11-91 (99)
241 1x4a_A Splicing factor, argini 99.7 1.5E-16 5.1E-21 115.9 13.9 84 68-156 17-100 (109)
242 2kt5_A RNA and export factor-b 99.7 1.7E-16 5.8E-21 118.4 14.5 84 69-155 31-114 (124)
243 2dha_A FLJ20171 protein; RRM d 99.7 6.2E-18 2.1E-22 125.1 6.4 81 165-248 22-106 (123)
244 2dnp_A RNA-binding protein 14; 99.7 2.8E-17 9.7E-22 115.4 9.5 79 163-250 6-84 (90)
245 2f3j_A RNA and export factor b 99.7 2.5E-17 8.6E-22 130.3 10.2 85 163-249 85-169 (177)
246 3ulh_A THO complex subunit 4; 99.7 2.6E-17 8.9E-22 119.6 9.5 82 69-153 25-106 (107)
247 1wg5_A Heterogeneous nuclear r 99.7 7.1E-17 2.4E-21 116.5 11.7 81 70-154 12-93 (104)
248 2j8a_A Histone-lysine N-methyl 99.7 1.3E-17 4.5E-22 120.9 7.8 82 167-249 3-98 (136)
249 1p1t_A Cleavage stimulation fa 99.7 2E-17 6.8E-22 119.6 8.8 83 71-155 6-88 (104)
250 4a8x_A RNA-binding protein wit 99.7 1.8E-17 6.1E-22 115.9 8.3 81 72-154 3-84 (88)
251 2ek1_A RNA-binding protein 12; 99.7 7.5E-18 2.6E-22 119.7 6.4 81 71-153 13-93 (95)
252 2i2y_A Fusion protein consists 99.7 1.8E-17 6.3E-22 128.0 9.1 109 205-319 9-119 (150)
253 1sjr_A Polypyrimidine tract-bi 99.7 4.3E-17 1.5E-21 125.2 11.0 80 166-250 46-127 (164)
254 1wf1_A RNA-binding protein RAL 99.7 4.1E-17 1.4E-21 119.1 10.4 77 163-248 24-101 (110)
255 2err_A Ataxin-2-binding protei 99.7 1.8E-17 6E-22 120.7 8.4 83 68-154 24-106 (109)
256 2kvi_A Nuclear polyadenylated 99.7 2.4E-17 8.2E-22 117.2 8.7 79 163-250 7-86 (96)
257 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 115.1 9.5 82 69-155 6-87 (91)
258 2lea_A Serine/arginine-rich sp 99.7 2E-17 6.7E-22 125.1 8.6 86 68-155 42-127 (135)
259 2dgx_A KIAA0430 protein; RRM d 99.7 3.7E-17 1.3E-21 116.2 9.6 81 70-155 6-90 (96)
260 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.6E-21 115.5 12.1 85 68-156 10-94 (103)
261 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.7E-22 119.1 6.8 81 163-249 13-93 (96)
262 2cq2_A Hypothetical protein LO 99.7 1.4E-17 4.6E-22 120.5 7.3 80 163-249 22-108 (114)
263 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-17 6.5E-22 117.1 7.9 79 164-250 6-86 (93)
264 1x4f_A Matrin 3; structural ge 99.7 8.9E-17 3E-21 116.2 11.5 81 69-155 21-102 (112)
265 2wbr_A GW182, gawky, LD47780P; 99.7 2.7E-17 9.3E-22 111.7 8.1 73 72-152 6-78 (89)
266 2diu_A KIAA0430 protein; struc 99.7 6.2E-17 2.1E-21 111.0 9.8 77 164-251 6-88 (96)
267 2hgm_A HNRPF protein, heteroge 99.7 6.8E-18 2.3E-22 125.1 5.4 80 164-247 40-121 (126)
268 2cq1_A PTB-like protein L; RRM 99.7 9.2E-17 3.1E-21 114.6 11.0 81 70-156 12-92 (101)
269 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.8E-22 113.4 6.5 76 74-152 1-76 (77)
270 2xs2_A Deleted in azoospermia- 99.7 7.4E-18 2.5E-22 121.4 5.3 82 165-250 8-89 (102)
271 2cpy_A RNA-binding protein 12; 99.7 1.9E-17 6.4E-22 121.6 7.5 81 69-153 11-92 (114)
272 2e44_A Insulin-like growth fac 99.7 4.8E-17 1.6E-21 115.7 9.4 80 164-248 13-93 (96)
273 1x4b_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 119.9 9.6 84 70-156 24-107 (116)
274 1wel_A RNA-binding protein 12; 99.7 3.1E-17 1.1E-21 122.4 8.7 82 69-153 21-102 (124)
275 2ad9_A Polypyrimidine tract-bi 99.7 8.3E-17 2.9E-21 117.6 10.6 79 70-156 28-108 (119)
276 2a3j_A U1 small nuclear ribonu 99.7 9.9E-17 3.4E-21 119.4 11.1 80 71-155 27-110 (127)
277 3zzy_A Polypyrimidine tract-bi 99.7 7.7E-17 2.6E-21 119.3 10.3 78 167-250 29-109 (130)
278 1x5p_A Negative elongation fac 99.7 1.2E-16 4.1E-21 113.8 10.8 81 162-251 11-91 (97)
279 2dis_A Unnamed protein product 99.7 8.4E-17 2.9E-21 117.3 10.1 85 70-156 5-93 (109)
280 1wg1_A KIAA1579 protein, homol 99.7 3.9E-17 1.3E-21 114.1 7.9 76 165-248 4-79 (88)
281 2lmi_A GRSF-1, G-rich sequence 99.7 2.7E-17 9.3E-22 119.3 7.4 81 69-153 7-90 (107)
282 2ki2_A SS-DNA binding protein 99.7 1.1E-17 3.8E-22 117.5 5.2 78 74-154 2-79 (90)
283 2kn4_A Immunoglobulin G-bindin 99.7 9.8E-17 3.3E-21 125.1 11.1 84 70-155 67-150 (158)
284 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.8E-17 3.3E-21 124.7 10.9 84 70-155 36-119 (156)
285 3egn_A RNA-binding protein 40; 99.7 1.3E-17 4.5E-22 127.7 5.8 84 163-250 42-133 (143)
286 2dnq_A RNA-binding protein 4B; 99.7 3.1E-16 1E-20 110.1 12.3 78 70-157 5-82 (90)
287 2krb_A Eukaryotic translation 99.7 4.1E-17 1.4E-21 112.1 7.6 69 73-143 1-75 (81)
288 2nlw_A Eukaryotic translation 99.7 4.8E-17 1.6E-21 117.6 8.2 80 70-153 12-98 (105)
289 1sjr_A Polypyrimidine tract-bi 99.7 2.2E-16 7.4E-21 121.3 11.8 83 70-156 43-125 (164)
290 2cpi_A CCR4-NOT transcription 99.7 1.1E-16 3.8E-21 116.9 9.7 86 69-156 11-102 (111)
291 1why_A Hypothetical protein ri 99.7 3.7E-16 1.3E-20 111.2 12.2 80 70-155 14-93 (97)
292 2hgl_A HNRPF protein, heteroge 99.7 3.9E-17 1.3E-21 123.0 7.4 82 68-153 39-123 (136)
293 1x4c_A Splicing factor, argini 99.7 2.6E-16 8.8E-21 114.4 11.6 80 70-156 12-94 (108)
294 2la4_A Nuclear and cytoplasmic 99.7 2.1E-17 7.1E-22 118.8 5.6 75 71-153 25-99 (101)
295 2fc9_A NCL protein; structure 99.7 1.5E-16 5.2E-21 114.2 10.1 82 69-156 11-92 (101)
296 2db1_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 120.5 7.3 80 70-153 14-96 (118)
297 2cpj_A Non-POU domain-containi 99.7 3E-16 1E-20 112.2 11.5 79 69-155 11-89 (99)
298 2e5g_A U6 snRNA-specific termi 99.7 1.3E-16 4.4E-21 113.0 9.5 78 165-249 7-84 (94)
299 2fc8_A NCL protein; structure 99.7 2.6E-16 8.8E-21 113.2 11.0 84 68-156 10-93 (102)
300 1fj7_A Nucleolin RBD1, protein 99.7 2.7E-17 9.3E-22 118.1 5.8 82 70-155 14-95 (101)
301 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-17 1.6E-21 118.0 7.0 80 70-155 25-105 (111)
302 2pe8_A Splicing factor 45; RRM 99.7 2.3E-16 8E-21 113.4 10.6 84 164-248 6-95 (105)
303 2jwn_A Embryonic polyadenylate 99.7 1E-16 3.5E-21 119.6 9.1 81 72-155 35-115 (124)
304 2dnn_A RNA-binding protein 12; 99.7 8.2E-17 2.8E-21 116.5 8.1 79 70-153 13-91 (109)
305 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-16 5.8E-21 110.1 9.4 75 70-152 9-84 (85)
306 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.5E-16 5E-21 124.8 9.9 85 70-156 69-153 (165)
307 2e5j_A Methenyltetrahydrofolat 99.7 4.8E-16 1.6E-20 110.7 11.7 78 70-154 16-93 (97)
308 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-16 5.5E-21 115.3 9.2 77 69-155 27-103 (108)
309 3q2s_C Cleavage and polyadenyl 99.7 8.5E-17 2.9E-21 132.7 8.1 80 72-153 67-148 (229)
310 2e5i_A Heterogeneous nuclear r 99.7 6E-16 2.1E-20 114.0 11.8 75 168-249 27-104 (124)
311 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-17 1.6E-21 110.2 5.4 70 75-145 1-70 (75)
312 2cpx_A Hypothetical protein FL 99.7 2E-16 6.8E-21 116.4 8.4 85 70-156 22-106 (115)
313 3zzy_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 115.5 9.5 81 71-156 26-107 (130)
314 2e5i_A Heterogeneous nuclear r 99.7 4.3E-15 1.5E-19 109.5 15.0 79 72-156 24-103 (124)
315 1whx_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 116.0 7.2 77 70-154 7-83 (111)
316 3d2w_A TAR DNA-binding protein 99.7 2.3E-16 7.8E-21 110.2 7.7 76 164-249 9-86 (89)
317 2dgu_A Heterogeneous nuclear r 99.7 7.6E-16 2.6E-20 110.9 10.6 77 70-156 8-84 (103)
318 1x4g_A Nucleolysin TIAR; struc 99.7 6.1E-16 2.1E-20 112.6 10.2 80 70-157 22-101 (109)
319 3beg_B Splicing factor, argini 99.7 2.1E-16 7.1E-21 116.1 7.5 74 165-246 15-93 (115)
320 2xnq_A Nuclear polyadenylated 99.7 6.8E-16 2.3E-20 109.7 9.8 75 70-154 19-94 (97)
321 2bz2_A Negative elongation fac 99.7 5.6E-16 1.9E-20 114.7 9.7 79 163-250 36-114 (121)
322 2dgt_A RNA-binding protein 30; 99.6 9.5E-16 3.2E-20 108.0 10.1 79 68-156 5-83 (92)
323 2f3j_A RNA and export factor b 99.6 6.5E-16 2.2E-20 122.2 10.1 84 68-154 83-166 (177)
324 2dnl_A Cytoplasmic polyadenyla 99.6 3.1E-16 1.1E-20 115.1 7.7 78 164-245 6-86 (114)
325 2hzc_A Splicing factor U2AF 65 99.6 3.4E-16 1.2E-20 109.1 7.5 71 165-243 5-86 (87)
326 2hgn_A Heterogeneous nuclear r 99.6 1.5E-16 5E-21 120.2 6.0 81 69-154 42-122 (139)
327 2dnp_A RNA-binding protein 14; 99.6 1E-15 3.6E-20 107.3 9.9 77 69-155 5-81 (90)
328 2hgm_A HNRPF protein, heteroge 99.6 4.2E-16 1.4E-20 115.4 8.2 78 70-152 39-118 (126)
329 2cpd_A Apobec-1 stimulating pr 99.6 2.3E-15 7.9E-20 107.5 11.8 78 69-156 11-90 (99)
330 1nu4_A U1A RNA binding domain; 99.6 2.7E-16 9.3E-21 112.0 6.4 81 70-155 5-89 (97)
331 2lcw_A RNA-binding protein FUS 99.4 1.8E-17 6.1E-22 122.3 0.0 85 70-156 4-96 (116)
332 2voo_A Lupus LA protein; RNA-b 99.6 1E-15 3.5E-20 122.8 10.0 122 124-248 63-188 (193)
333 2dha_A FLJ20171 protein; RRM d 99.6 2.4E-16 8.3E-21 116.5 5.8 77 71-151 21-101 (123)
334 2xs2_A Deleted in azoospermia- 99.6 1.6E-16 5.5E-21 114.3 4.7 79 70-153 6-84 (102)
335 2kvi_A Nuclear polyadenylated 99.6 2E-15 6.8E-20 107.2 10.3 75 70-154 7-82 (96)
336 2dnl_A Cytoplasmic polyadenyla 99.6 9.7E-16 3.3E-20 112.4 8.9 65 70-135 5-72 (114)
337 2e5g_A U6 snRNA-specific termi 99.6 2.6E-15 9E-20 106.1 10.7 78 70-155 5-82 (94)
338 2e44_A Insulin-like growth fac 99.6 1.6E-15 5.6E-20 107.7 9.5 80 70-155 12-92 (96)
339 2cq2_A Hypothetical protein LO 99.6 8.2E-16 2.8E-20 111.1 8.0 77 71-153 23-104 (114)
340 2cqh_A IGF-II mRNA-binding pro 99.6 7.7E-16 2.6E-20 108.7 7.5 78 70-156 5-84 (93)
341 1wf1_A RNA-binding protein RAL 99.6 4.9E-15 1.7E-19 108.0 12.0 75 70-154 24-99 (110)
342 3d2w_A TAR DNA-binding protein 99.6 6.4E-16 2.2E-20 108.0 6.9 76 71-155 9-84 (89)
343 3u1l_A PRE-mRNA-splicing facto 99.6 1.1E-15 3.8E-20 125.3 8.9 80 163-249 131-231 (240)
344 1fjc_A Nucleolin RBD2, protein 99.6 5.3E-16 1.8E-20 110.3 6.1 80 69-155 12-91 (96)
345 2j8a_A Histone-lysine N-methyl 99.6 3E-16 1E-20 113.8 4.5 77 74-152 3-93 (136)
346 1wg1_A KIAA1579 protein, homol 99.6 9.6E-16 3.3E-20 107.0 6.8 76 71-155 3-78 (88)
347 2diu_A KIAA0430 protein; struc 99.6 1.1E-14 3.7E-19 99.9 11.6 72 73-156 8-85 (96)
348 1wf0_A TDP-43, TAR DNA-binding 99.6 4.5E-16 1.5E-20 108.7 5.0 78 165-250 4-81 (88)
349 1x5p_A Negative elongation fac 99.6 9.4E-15 3.2E-19 103.9 11.6 77 70-156 12-88 (97)
350 3beg_B Splicing factor, argini 99.6 3.6E-15 1.2E-19 109.5 9.2 76 71-153 14-92 (115)
351 3v4m_A Splicing factor U2AF 65 99.6 3.4E-15 1.2E-19 107.3 8.0 84 164-248 3-98 (105)
352 2dit_A HIV TAT specific factor 99.6 1.1E-14 3.9E-19 106.3 10.7 83 162-249 11-104 (112)
353 3egn_A RNA-binding protein 40; 99.6 5.4E-16 1.9E-20 118.7 3.6 84 70-155 42-130 (143)
354 2hzc_A Splicing factor U2AF 65 99.6 4.9E-15 1.7E-19 103.2 7.4 72 70-150 3-85 (87)
355 1wf0_A TDP-43, TAR DNA-binding 99.6 5.7E-15 1.9E-19 103.0 7.2 77 71-156 3-79 (88)
356 3ue2_A Poly(U)-binding-splicin 99.6 7.7E-15 2.6E-19 107.5 8.0 82 165-247 19-109 (118)
357 3pgw_S U1-70K; protein-RNA com 99.6 8.6E-15 2.9E-19 131.8 10.0 83 70-154 99-181 (437)
358 1jmt_A Splicing factor U2AF 35 99.6 1.9E-15 6.5E-20 108.5 4.2 72 171-244 20-103 (104)
359 2bz2_A Negative elongation fac 99.5 3.4E-14 1.1E-18 105.1 9.8 76 70-155 36-111 (121)
360 2pe8_A Splicing factor 45; RRM 99.5 5.6E-14 1.9E-18 100.9 9.5 81 71-153 6-92 (105)
361 3u1l_A PRE-mRNA-splicing facto 99.5 5.5E-14 1.9E-18 115.2 9.2 80 70-155 131-229 (240)
362 2voo_A Lupus LA protein; RNA-b 99.5 6.3E-14 2.1E-18 112.4 8.5 78 72-153 108-185 (193)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.6E-13 1.6E-17 94.9 11.1 66 176-249 27-92 (100)
364 3s6e_A RNA-binding protein 39; 99.4 4.7E-13 1.6E-17 97.2 8.2 80 164-248 5-94 (114)
365 3tht_A Alkylated DNA repair pr 99.4 3.4E-13 1.2E-17 116.5 8.0 77 163-246 15-98 (345)
366 2dit_A HIV TAT specific factor 99.4 2.7E-12 9.2E-17 93.6 11.5 81 69-155 11-102 (112)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.6E-11 5.6E-16 86.8 12.6 78 70-156 7-91 (100)
368 3v4m_A Splicing factor U2AF 65 99.4 1.7E-12 5.9E-17 93.1 7.3 81 71-153 3-95 (105)
369 1jmt_A Splicing factor U2AF 35 99.3 3.4E-13 1.2E-17 96.7 2.6 72 78-152 20-103 (104)
370 3tht_A Alkylated DNA repair pr 99.3 1.8E-12 6.1E-17 112.0 7.2 111 70-189 15-131 (345)
371 3ue2_A Poly(U)-binding-splicin 99.3 4.7E-12 1.6E-16 92.6 7.2 79 72-152 19-106 (118)
372 2dnr_A Synaptojanin-1; RRM dom 99.2 5.5E-11 1.9E-15 80.7 6.7 74 164-247 5-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 7E-15 83.3 8.2 77 164-247 16-96 (121)
374 3s6e_A RNA-binding protein 39; 99.1 2.1E-10 7E-15 83.2 8.2 76 72-153 6-91 (114)
375 3dxb_A Thioredoxin N-terminall 99.0 4.7E-10 1.6E-14 92.1 8.4 69 178-247 141-213 (222)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 3E-10 1E-14 77.5 5.3 74 163-246 12-94 (95)
377 1owx_A Lupus LA protein, SS-B, 99.0 1.7E-09 5.9E-14 78.5 9.2 65 70-140 15-83 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.8 3E-08 1E-12 68.9 9.1 73 165-244 20-97 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.7 2.7E-08 9.1E-13 67.6 6.5 70 73-153 7-84 (91)
380 3dxb_A Thioredoxin N-terminall 98.7 6E-08 2.1E-12 79.4 7.9 66 85-152 141-210 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 1.3E-07 4.3E-12 64.6 5.1 69 72-151 14-91 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.3 9.5E-06 3.2E-10 56.0 10.2 89 165-287 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.1 9.5E-06 3.3E-10 56.4 7.5 66 70-141 18-88 (117)
384 2dhx_A Poly (ADP-ribose) polym 98.0 0.00011 3.6E-09 50.8 11.1 90 70-179 5-99 (104)
385 1wey_A Calcipressin 1; structu 98.0 1.4E-05 4.8E-10 55.5 6.5 75 166-247 5-84 (104)
386 1whv_A Poly(A)-specific ribonu 97.7 0.00026 8.8E-09 48.3 8.6 54 167-230 17-70 (100)
387 1whv_A Poly(A)-specific ribonu 97.7 0.00029 1E-08 48.0 8.7 57 71-136 14-70 (100)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00022 7.7E-09 48.6 8.0 68 167-235 2-71 (91)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00038 1.3E-08 47.4 7.1 68 74-141 2-71 (91)
390 3ctr_A Poly(A)-specific ribonu 97.4 0.0002 6.9E-09 48.9 4.4 53 168-230 8-60 (101)
391 1wey_A Calcipressin 1; structu 97.3 0.00056 1.9E-08 47.4 6.5 75 71-153 3-82 (104)
392 3ctr_A Poly(A)-specific ribonu 97.3 0.00032 1.1E-08 47.9 4.9 54 74-136 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 97.1 0.0017 5.6E-08 46.4 7.0 74 165-247 23-97 (119)
394 2l08_A Regulator of nonsense t 96.8 0.0012 4E-08 45.3 3.6 69 166-235 9-79 (97)
395 1wwh_A Nucleoporin 35, nucleop 96.6 0.0055 1.9E-07 43.7 6.5 64 70-141 21-84 (119)
396 2l08_A Regulator of nonsense t 96.4 0.0031 1.1E-07 43.2 3.7 69 73-141 9-79 (97)
397 3pq1_A Poly(A) RNA polymerase; 96.3 0.0017 5.9E-08 58.0 2.9 56 72-133 52-107 (464)
398 3pq1_A Poly(A) RNA polymerase; 95.5 0.008 2.7E-07 53.8 3.6 54 167-227 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 94.9 0.028 9.7E-07 40.6 4.1 78 167-247 8-99 (132)
400 3p3d_A Nucleoporin 53; structu 92.1 0.12 4.1E-06 37.4 3.4 67 73-141 7-87 (132)
401 3d45_A Poly(A)-specific ribonu 91.1 0.85 2.9E-05 41.5 8.7 57 72-137 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 89.7 0.74 2.5E-05 41.9 7.1 56 166-231 440-495 (507)
403 2g0c_A ATP-dependent RNA helic 66.6 16 0.00053 23.2 5.5 68 168-245 2-75 (76)
404 1xn9_A 30S ribosomal protein S 51.8 54 0.0018 22.3 6.4 48 176-224 28-79 (101)
405 4eyt_A Telomerase associated p 51.3 49 0.0017 21.8 7.8 57 166-231 12-68 (129)
406 1ywx_A 30S ribosomal protein S 49.0 57 0.0019 22.3 6.0 48 176-224 28-79 (102)
407 4e8u_A Putative uncharacterize 47.7 38 0.0013 25.6 5.4 45 275-319 13-71 (172)
408 2e5p_A Protein PHF1, PHD finge 46.6 14 0.00048 22.9 2.3 19 299-319 28-46 (68)
409 2xzm_P RPS24E; ribosome, trans 45.5 24 0.00083 25.9 3.9 48 176-224 31-82 (149)
410 2eqj_A Metal-response element- 42.3 18 0.0006 22.5 2.3 19 299-319 32-50 (66)
411 2m0o_A PHD finger protein 1; t 41.9 19 0.00063 23.0 2.4 19 299-319 45-63 (79)
412 4e8u_A Putative uncharacterize 41.0 49 0.0017 25.0 5.1 47 76-125 15-72 (172)
413 3u5c_Y RP50, 40S ribosomal pro 37.2 1.1E+02 0.0039 21.9 6.6 48 176-224 33-84 (135)
414 3lpe_A Putative transcription 35.7 62 0.0021 21.4 4.6 44 86-134 21-69 (92)
415 4hcz_A PHD finger protein 1; p 35.7 28 0.00097 20.9 2.4 19 299-319 22-40 (58)
416 2ki0_A DS119; beta-alpha-beta, 29.8 27 0.00091 17.7 1.4 18 72-94 4-21 (36)
417 2lfv_A Protein DAMX; cell divi 35.2 12 0.0004 25.9 0.0 61 167-233 26-88 (106)
418 2x4i_A CAG38848, uncharacteriz 27.3 1.6E+02 0.0054 20.5 6.6 66 119-200 41-112 (114)
419 2i9x_A Putative septation prot 27.1 89 0.003 20.6 4.0 26 193-218 5-30 (87)
420 3zzp_A TS9, ribosomal protein 26.8 80 0.0027 20.2 3.7 60 210-298 6-68 (77)
421 4a4j_A Pacszia, cation-transpo 26.4 1E+02 0.0036 18.1 5.3 42 276-317 5-46 (69)
422 3dxs_X Copper-transporting ATP 25.8 1.1E+02 0.0038 18.3 4.4 44 275-318 4-47 (74)
423 2kjw_A TS9, 30S ribosomal prot 25.7 59 0.002 21.9 3.1 67 210-305 6-83 (96)
424 2v94_A RPS24, 30S ribosomal pr 25.2 1.7E+02 0.0057 20.1 5.3 48 176-224 37-88 (107)
425 3j21_T 50S ribosomal protein L 24.5 1.5E+02 0.0052 19.4 5.9 55 170-227 26-81 (86)
426 1vq8_S 50S ribosomal protein L 24.2 1.4E+02 0.0049 19.4 4.6 54 170-226 25-79 (85)
427 3ts2_A Protein LIN-28 homolog 23.7 30 0.001 25.4 1.4 28 88-123 2-29 (148)
428 4eyt_A Telomerase associated p 23.4 1.6E+02 0.0056 19.3 8.2 59 71-137 10-68 (129)
429 3fry_A Probable copper-exporti 22.7 1.3E+02 0.0046 18.0 4.5 44 274-318 6-49 (73)
430 2ia9_A Putative septation prot 22.7 1.2E+02 0.0039 20.6 4.0 26 193-218 5-30 (100)
431 2xk0_A Polycomb protein PCL; t 22.6 29 0.00099 21.6 0.9 18 299-320 34-51 (69)
432 3u5e_X 60S ribosomal protein L 22.6 1.8E+02 0.0061 21.1 5.2 55 169-226 81-136 (142)
433 2i9z_A Putative septation prot 22.4 1.2E+02 0.0041 20.8 4.1 26 193-218 5-30 (105)
434 4a17_R RPL23A, 60S ribosomal p 21.2 1.9E+02 0.0065 21.2 5.2 54 170-226 90-144 (150)
435 1fme_A FSD-EY peptide; beta-BE 20.9 42 0.0014 16.0 1.1 12 287-298 14-25 (28)
436 1yg0_A COP associated protein; 20.0 1.3E+02 0.0045 17.0 4.7 43 276-318 4-46 (66)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.5e-43 Score=301.27 Aligned_cols=209 Identities=17% Similarity=0.300 Sum_probs=188.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||.++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++.|+|..+ .++.+.+.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~~ 91 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQL 91 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEEe
Confidence 468999999999999999999999999 989887 33689999999999999999999999998 556777776
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
+. ..++|||+|||.++++++|+++|+. ||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|+|
T Consensus 92 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~ 159 (284)
T 3smz_A 92 QP-----------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 159 (284)
T ss_dssp CC-----------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cC-----------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 43 2359999999999999999999998 99999999999988999999999999999999999999999
Q ss_pred cccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcC-CHHHHHHHhccCCCEEEEEecCC-
Q 020847 232 VLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV-TDDILKTVFGQYGELVHVKIPAG- 309 (320)
Q Consensus 232 ~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~L~~~f~~~G~i~~v~i~~~- 309 (320)
..++|+.|.|.|+.++.... .....++|||+|||..+ ++++|+++|+.||.|.+++|.++
T Consensus 160 ~~~~g~~i~v~~a~~~~~~~------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 160 KPLGPRTLYVHWTDAGQLTP------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp CEETTEECEEEECCGGGCCT------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred CEeCCcEEEEEECCCCCCCc------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 99999999999998764321 23456899999999996 99999999999999999998765
Q ss_pred ----ccEEEEEeec
Q 020847 310 ----KRCGFVQFAN 319 (320)
Q Consensus 310 ----~~~afV~F~~ 319 (320)
+|+|||+|.+
T Consensus 222 ~g~~~g~afV~f~~ 235 (284)
T 3smz_A 222 DGQLKGFAVLEYET 235 (284)
T ss_dssp SCCEEEEEEEECSS
T ss_pred CCCcccEEEEEeCC
Confidence 7999999986
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.8e-42 Score=299.23 Aligned_cols=221 Identities=14% Similarity=0.291 Sum_probs=181.7
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
........++|||+|||.++|+++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|+ .++|..+ .++
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~--~g~ 108 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVV--GQN 108 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEE--TTE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEe--CCc
Confidence 3445677899999999999999999999999999999999998633 5899999999999999999 5999988 556
Q ss_pred ceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 020847 146 NFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
.+.+.++. .++|||+|||.++++++|+++|+. || .|..+.++.+.. |.++|||||+|.+.++|.+
T Consensus 109 ~i~v~~~~------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 109 EIIVSHLT------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp ECEEEECC------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC--------CCEEEEECSSHHHHHH
T ss_pred EEEEEECC------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHH
Confidence 67777653 459999999999999999999998 99 999999998854 8899999999999999999
Q ss_pred HHHHhcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCc-CCHHHHHHHhccCCCEEE
Q 020847 225 SMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPS-VTDDILKTVFGQYGELVH 303 (320)
Q Consensus 225 A~~~l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~L~~~f~~~G~i~~ 303 (320)
|+..|+|..++|+.|.|.|+.+....... .......++|||+|||.. +++++|+++|+.||.|.+
T Consensus 175 A~~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 175 CVEKLNGLKIEGYTLVTKVSNPLEKSKRT--------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp HHHHHTTCEETTEECEEEECCCC-----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred HHHHhCCCEeCCcEEEEEECCCCcccccc--------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 99999999999999999999876543311 123456789999999999 999999999999999999
Q ss_pred EEecCC-------ccEEEEEeec
Q 020847 304 VKIPAG-------KRCGFVQFAN 319 (320)
Q Consensus 304 v~i~~~-------~~~afV~F~~ 319 (320)
|+|.++ +|+|||+|.+
T Consensus 241 v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp EECCSCCC---CCCEEEEEEESS
T ss_pred EEEEecCCcCCCCceEEEEEeCC
Confidence 999653 6899999986
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-37 Score=256.34 Aligned_cols=173 Identities=31% Similarity=0.506 Sum_probs=152.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||+++|+++|+++|+.||.|.+|+|++|..+|.++|||||+|.+.++|.+|++.+++..+ .++.+++.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~~ 90 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRIM 90 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCcccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999998 55667777
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
++...... ......+|||+|||.++++++|+++|++ ||.|.++.|++|. +.++|||||+|.+.++|.+|++.||
T Consensus 91 ~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 91 WSQRDPSL---RKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECCCCTHH---HHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccccc---cccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhC
Confidence 66533211 1223468999999999999999999997 9999999999985 5579999999999999999999999
Q ss_pred CcccCCcceEEccCCcccccc
Q 020847 231 GVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 231 g~~~~g~~i~v~~a~~~~~~~ 251 (320)
|..++|+.|.|.|++++....
T Consensus 165 g~~~~g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 165 GMLLNDRKVFVGRFKSRKERE 185 (213)
T ss_dssp TCEETTEECEEEECCCHHHHH
T ss_pred CCEECCEEEEEEEcCCCcccc
Confidence 999999999999998875443
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-36 Score=236.47 Aligned_cols=166 Identities=33% Similarity=0.568 Sum_probs=150.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
++|||+|||.++|+++|+++|+.||.|.++.+..++ ++.++|||||+|.+.++|.+|++.++|..+ .++.+.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 589999999999999999999999999999999985 577899999999999999999999999999 56777777765
Q ss_pred CCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 154 YGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.... ....+.++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|+|||+|.+.++|.+|++.|||..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 4332 34456789999999999999999999997 9999999999998899999999999999999999999999999
Q ss_pred cCCcceEEccCCc
Q 020847 234 CSTRPMRIGPAAT 246 (320)
Q Consensus 234 ~~g~~i~v~~a~~ 246 (320)
++|+.|+|.||+.
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.3e-35 Score=235.22 Aligned_cols=165 Identities=24% Similarity=0.508 Sum_probs=152.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
+.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.++|..+ .++.+.+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 458999999999999999999999999999999999988999999999999999999999999999999 567788877
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
+.... .....++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|+|||+|.+.++|.+|++.|||
T Consensus 80 ~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCS-----STTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 76432 2345679999999999999999999998 99999999999988899999999999999999999999999
Q ss_pred cccCC--cceEEccC
Q 020847 232 VLCST--RPMRIGPA 244 (320)
Q Consensus 232 ~~~~g--~~i~v~~a 244 (320)
..+.| ++|+|.||
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.3e-35 Score=244.94 Aligned_cols=177 Identities=21% Similarity=0.363 Sum_probs=154.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++|+++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|++.|+|..+ .++.+.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 3468899999999999999999999999999999999988999999999999999999999999999999 45566666
Q ss_pred ccCCCCCCC------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 020847 151 WATYGAGER------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 151 ~~~~~~~~~------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
++....... .......++|||+|||.++++++|+++|++ ||.|..+.++.+..+|.++|||||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 654332111 012345679999999999999999999998 9999999999998899999999999999999999
Q ss_pred HHHHhcCcccCCcceEEccCCccccc
Q 020847 225 SMTEMNGVLCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 225 A~~~l~g~~~~g~~i~v~~a~~~~~~ 250 (320)
|++.|||..++|+.|+|.|+.++...
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999999999999999887443
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.4e-35 Score=233.40 Aligned_cols=164 Identities=27% Similarity=0.488 Sum_probs=150.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+.+.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 57899999999999999999999999999999999988999999999999999999999999999998 5677777776
Q ss_pred CCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020847 153 TYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 232 (320)
.... .....++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|+|||+|.+.++|.+|++.|||.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 2234579999999999999999999997 999999999999888999999999999999999999999999
Q ss_pred ccCCcc--eEEccC
Q 020847 233 LCSTRP--MRIGPA 244 (320)
Q Consensus 233 ~~~g~~--i~v~~a 244 (320)
.++|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999975 888886
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.7e-35 Score=240.57 Aligned_cols=178 Identities=20% Similarity=0.359 Sum_probs=149.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++. ++..+ .++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 455789999999999999999999999999999999999998999999999999999999999955 88777 556677
Q ss_pred eeccCCCCCCC-CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 149 LNWATYGAGER-RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 149 ~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
+.++....... .......++|||+|||.++++++|+++|++ ||.|..+.++.+..+|.++|||||+|.+.++|.+|+.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 77665432221 223345689999999999999999999997 9999999999998899999999999999999999997
Q ss_pred HhcCcccCCcceEEccCCcccccc
Q 020847 228 EMNGVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 228 ~l~g~~~~g~~i~v~~a~~~~~~~ 251 (320)
. +|..++|+.|.|.|+.++....
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp C-SCCEETTEECEEEECC------
T ss_pred h-CCcEECCEEEEEEecCChhHhc
Confidence 6 8999999999999999886654
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=9.1e-35 Score=231.92 Aligned_cols=168 Identities=17% Similarity=0.332 Sum_probs=149.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCC--CccCeEEEEEcCHHHHHHHHHHhcCCCCC-CCCcceE
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEGYGFIEFVSHAAAERVLQTFNGTQMP-STEQNFR 148 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afv~f~~~~~A~~a~~~l~g~~~~-~~~~~~~ 148 (320)
+.++|||+|||.++|+++|+++|+.||.|.+++++++..++ .++|||||+|.+.++|.+|++.++|..+. +..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998776 89999999999999999999999998764 4577777
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.++..... .....++|||+|||.++++++|+++|++ ||.|.++.+.++. +|.++|||||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654322 2335679999999999999999999997 9999999999985 689999999999999999999999
Q ss_pred hcCcccC---CcceEEccCC
Q 020847 229 MNGVLCS---TRPMRIGPAA 245 (320)
Q Consensus 229 l~g~~~~---g~~i~v~~a~ 245 (320)
|||..+. +++|.|.||+
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999984
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.5e-35 Score=234.72 Aligned_cols=165 Identities=23% Similarity=0.393 Sum_probs=145.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
+.++|||+|||.++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+.. +..+ .++.+.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 568999999999999999999999999999999999988999999999999999999999974 3444 344455555
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
+... ......++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|||||+|.+.++|.+|++ ++|
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 4321 11223569999999999999999999998 9999999999998889999999999999999999997 899
Q ss_pred cccCCcceEEccCCcc
Q 020847 232 VLCSTRPMRIGPAATK 247 (320)
Q Consensus 232 ~~~~g~~i~v~~a~~~ 247 (320)
..++|+.|.|.|+.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999876
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.8e-33 Score=222.70 Aligned_cols=160 Identities=20% Similarity=0.402 Sum_probs=142.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ 139 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~ 139 (320)
++.++|||+|||.++|+++|+++|+.| | .|.++.+.. ++|||||+|.+.++|.+|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 677776654 4899999999999999999 999999
Q ss_pred CCCCCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 020847 140 MPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDE 219 (320)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 219 (320)
+ .++.+.+.++.... .....++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|+|||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 8 56677777655332 2234679999999999999999999997 99999999999988999999999999999
Q ss_pred HHHHHHHHHhcCcccCCcceEEccCC
Q 020847 220 SEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 220 ~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
++|.+|++.|||..++|+.|.|.||.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999973
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.3e-33 Score=226.34 Aligned_cols=163 Identities=16% Similarity=0.199 Sum_probs=137.1
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQ-PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp-~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
+.++|||+||| .++|+++|+++|+.||.|.+|+++++ .+|||||+|.+.++|..|++.|||..+. ++.|++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMF--GQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEET--TEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEEC--CceEEEE
Confidence 56899999999 89999999999999999999999876 4899999999999999999999999994 5666776
Q ss_pred ccCCCCCCC----------------------C----------CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCe--eE
Q 020847 151 WATYGAGER----------------------R----------QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV--KG 196 (320)
Q Consensus 151 ~~~~~~~~~----------------------~----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i--~~ 196 (320)
++....... + ....++++|||+|||.++++++|+++|++ ||.| ..
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEE
Confidence 664321100 0 01235678999999999999999999998 9999 88
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc----ceEEccC
Q 020847 197 AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR----PMRIGPA 244 (320)
Q Consensus 197 v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~i~v~~a 244 (320)
+++..+. +.++|+|||+|.+.++|.+|+..|||..+.|+ ++.|.++
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9888774 55679999999999999999999999999887 4555553
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=6.9e-33 Score=225.54 Aligned_cols=169 Identities=19% Similarity=0.356 Sum_probs=145.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ 139 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~ 139 (320)
+..++|||+|||.++|+++|+++|+.| | .|.++.+. .++|||||+|.+.++|.+|+ .|+|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 356899999999999999999999999 5 56666553 35899999999999999999 899999
Q ss_pred CCCCCcceEeeccCCCCCCC---------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC
Q 020847 140 MPSTEQNFRLNWATYGAGER---------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT 204 (320)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~ 204 (320)
+ .++.+.+.++....... .......++|||+|||.++++++|+++|++ ||.|..+.+..+..
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSA 151 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTT
T ss_pred E--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCC
Confidence 8 56677777765432111 112245689999999999999999999998 99999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccc
Q 020847 205 TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 205 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|++++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999987753
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.1e-33 Score=225.79 Aligned_cols=166 Identities=18% Similarity=0.294 Sum_probs=144.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|+|..+ .++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 4567899999999999999999999999998766 33444467788999999999999999999 6999999 577888
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.++..... ......++|||+|||.++++++|+++|++ ||.|..+ ..+|.++|||||+|.+.++|.+|++.
T Consensus 85 v~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 888764322 23345679999999999999999999998 9988765 35789999999999999999999999
Q ss_pred hcCcccCCcceEEccCCcc
Q 020847 229 MNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 229 l~g~~~~g~~i~v~~a~~~ 247 (320)
|||..++|+.|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999876
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.8e-32 Score=235.58 Aligned_cols=174 Identities=16% Similarity=0.251 Sum_probs=157.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||.++|+++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|+..|+|..+ .++.+.+.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 347899999999999999999999999999999999988999999999999999999999999999998 567788888
Q ss_pred cCCCCCCCCCCCCCCceEEecCCCCCC-CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 152 ATYGAGERRQDDGPDFTIFVGDLAADV-TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~v~nl~~~~-t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
+..... .......++|||+|||.++ ++++|+++|++ ||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..||
T Consensus 172 a~~~~~--~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQL--TPALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGC--CTTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCC--CcccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 765432 2334567899999999995 99999999997 9999999999985 79999999999999999999999999
Q ss_pred CcccCCcceEEccCCcccccc
Q 020847 231 GVLCSTRPMRIGPAATKKAAT 251 (320)
Q Consensus 231 g~~~~g~~i~v~~a~~~~~~~ 251 (320)
|..++|+.|.|.|+.++....
T Consensus 248 g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp TCEETTEECEEEECCSSSCHH
T ss_pred CCccCCeEEEEEEecCCCccc
Confidence 999999999999999886644
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=3.9e-32 Score=233.23 Aligned_cols=165 Identities=19% Similarity=0.380 Sum_probs=142.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
....++|||+|||.++|+++|+ ++|+.||.|.+|++.+ +|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~ 80 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 80 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CCc
Confidence 4568999999999999999976 8999999999999875 577899999999999999999999999999 456
Q ss_pred ceEeeccCCCCCC-------------------------------------------------------------------
Q 020847 146 NFRLNWATYGAGE------------------------------------------------------------------- 158 (320)
Q Consensus 146 ~~~~~~~~~~~~~------------------------------------------------------------------- 158 (320)
.+++.|+......
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 6777666432210
Q ss_pred ---------------------------------------CCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 020847 159 ---------------------------------------RRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKV 199 (320)
Q Consensus 159 ---------------------------------------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i 199 (320)
......++++|||+|||.++++++|+++|++ ||.|.+|.+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEE
Confidence 0012235688999999999999999999997 999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEEccCC
Q 020847 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAA 245 (320)
Q Consensus 200 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~ 245 (320)
+.+. +|||||+|.+.++|.+|++.|||..++ |+.|+|.|++
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 8663 689999999999999999999999999 9999999986
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=5e-32 Score=225.27 Aligned_cols=165 Identities=16% Similarity=0.308 Sum_probs=142.6
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
..+.++|||+|||. ++++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++.|+|..+ .++.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 45678999999999 99999999999999999999999874 89999999999999999999999999 456677
Q ss_pred eeccCCCCCCC------------------------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCC-CeeEE
Q 020847 149 LNWATYGAGER------------------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGA 197 (320)
Q Consensus 149 ~~~~~~~~~~~------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v 197 (320)
+.++....... .....++++|||+|||.++++++|+++|++ || .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEE
Confidence 76665331000 011234689999999999999999999998 99 99999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEEccCCcc
Q 020847 198 KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAATK 247 (320)
Q Consensus 198 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~~ 247 (320)
.++.+ .+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98653 3789999999999999999999999999 999999999864
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.8e-32 Score=235.29 Aligned_cols=171 Identities=16% Similarity=0.303 Sum_probs=144.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..++|||+|||.++++++|+++|+.|| .|.+|.++.+.. |.++|||||+|.+.++|.+|+..|+|..+ .++.+.+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 468999999999999999999999999 999999998854 77899999999999999999999999999 55778888
Q ss_pred ccCCCCCCCC--CCCCCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHH
Q 020847 151 WATYGAGERR--QDDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 151 ~~~~~~~~~~--~~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~ 226 (320)
++.......+ ......++|||+|||.+ +++++|+++|++ ||.|..+.++.+.. +|.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8765443332 24456789999999999 999999999998 99999999998865 4999999999999999999999
Q ss_pred HHhcCcccCCcceEEccCCcc
Q 020847 227 TEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 227 ~~l~g~~~~g~~i~v~~a~~~ 247 (320)
.|||..++|+.|.|.|+.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=9e-32 Score=218.96 Aligned_cols=163 Identities=16% Similarity=0.312 Sum_probs=140.5
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
++++|||+|||. ++++++|+++|+.||.|.+|+++.+. +|||||+|.+.++|.+|++.|+|..+ .++.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 74 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRIT 74 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEE
Confidence 358999999999 99999999999999999999998874 78999999999999999999999999 45666666
Q ss_pred ccCCCCCCC------------------------------CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCC-CeeEEEE
Q 020847 151 WATYGAGER------------------------------RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKV 199 (320)
Q Consensus 151 ~~~~~~~~~------------------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~i 199 (320)
++....... .....++++|||+|||..+++++|+++|++ || .|..+.+
T Consensus 75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i 153 (198)
T 1qm9_A 75 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKF 153 (198)
T ss_dssp ECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEE
T ss_pred EecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEE
Confidence 654321000 011234789999999999999999999998 99 9999998
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC-CcceEEccCCcc
Q 020847 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS-TRPMRIGPAATK 247 (320)
Q Consensus 200 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~i~v~~a~~~ 247 (320)
+.+ .+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 154 ~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 154 FQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 654 2789999999999999999999999999 999999999864
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=3.4e-31 Score=224.56 Aligned_cols=160 Identities=25% Similarity=0.426 Sum_probs=143.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..++|..+ .++.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 345678999999999999999999999999999999865 389999999999999999999999999 567788
Q ss_pred eeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 020847 149 LNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTE 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 228 (320)
+.++.. .++|||+|||..+++++|+++|+. ||.|..|.++.+ .+|.++|||||+|.+.++|.+|+..
T Consensus 90 v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFATH-----------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECCC-----------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeeccc-----------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 887753 459999999999999999999997 999999999999 5899999999999999999999999
Q ss_pred hcC-cccC---CcceEEccCCcccc
Q 020847 229 MNG-VLCS---TRPMRIGPAATKKA 249 (320)
Q Consensus 229 l~g-~~~~---g~~i~v~~a~~~~~ 249 (320)
||+ ..+. +++|.|.++.....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEES
T ss_pred hcCCeEEecCCCceEEEeeccccCc
Confidence 954 4444 99999999987643
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.9e-30 Score=212.27 Aligned_cols=137 Identities=29% Similarity=0.491 Sum_probs=123.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++|+++|+++|++ ||.|.+|.|++|+.+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 345679999999999999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC----ccEEEEEee
Q 020847 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG----KRCGFVQFA 318 (320)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~----~~~afV~F~ 318 (320)
++......... ..++|||+|||..+++++|+++|+.||.|.+++|.++ +|+|||+|.
T Consensus 91 ~~~~~~~~~~~-------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~ 151 (213)
T 4f02_A 91 WSQRDPSLRKS-------------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 151 (213)
T ss_dssp ECCCCTHHHHH-------------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEES
T ss_pred ccccccccccc-------------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeC
Confidence 98866544322 3468999999999999999999999999999998653 789999998
Q ss_pred c
Q 020847 319 N 319 (320)
Q Consensus 319 ~ 319 (320)
+
T Consensus 152 ~ 152 (213)
T 4f02_A 152 T 152 (213)
T ss_dssp S
T ss_pred C
Confidence 6
No 22
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.6e-29 Score=197.15 Aligned_cols=132 Identities=26% Similarity=0.552 Sum_probs=121.8
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
+++|||+|||.++++++|+++|+. ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 469999999999999999999997 9999999999998899999999999999999999999999999999999999998
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeec
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~ 319 (320)
+..... ..++|||+|||..+++++|+++|+.||.|.++++.++ +|+|||+|.+
T Consensus 81 ~~~~~~---------------------~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 139 (167)
T 1fxl_A 81 PSSASI---------------------RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 139 (167)
T ss_dssp CCCGGG---------------------TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCcccC---------------------CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCC
Confidence 664322 3578999999999999999999999999999998653 6899999986
No 23
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.7e-29 Score=203.88 Aligned_cols=141 Identities=24% Similarity=0.431 Sum_probs=120.9
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|.+|.++.++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445789999999999999999999997 99999999999988999999999999999999999975 999999999999
Q ss_pred ccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEE
Q 020847 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFV 315 (320)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV 315 (320)
.++........ .......++|||+|||..+++++|+++|+.||.|.++.|.++ +|+|||
T Consensus 87 ~~~~~~~~~~~---------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV 151 (196)
T 1l3k_A 87 KRAVSREDSQR---------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 151 (196)
T ss_dssp EECCC--------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecccCcccccc---------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEE
Confidence 99886643321 123345689999999999999999999999999999998754 689999
Q ss_pred Eeec
Q 020847 316 QFAN 319 (320)
Q Consensus 316 ~F~~ 319 (320)
+|.+
T Consensus 152 ~F~~ 155 (196)
T 1l3k_A 152 TFDD 155 (196)
T ss_dssp EESS
T ss_pred EECC
Confidence 9986
No 24
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=3e-29 Score=198.49 Aligned_cols=133 Identities=29% Similarity=0.548 Sum_probs=122.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
++++|||+|||.++++++|+++|++ ||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4569999999999999999999998 999999999999888999999999999999999999999999999999999999
Q ss_pred CcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEee
Q 020847 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~ 318 (320)
.+... ....++|||+|||..+++++|+++|+.||.|.++.+.++ +|+|||+|.
T Consensus 81 ~~~~~---------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~ 139 (168)
T 1b7f_A 81 RPGGE---------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 139 (168)
T ss_dssp CCCSS---------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEES
T ss_pred CCCcc---------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEEC
Confidence 86642 234589999999999999999999999999999998764 489999998
Q ss_pred c
Q 020847 319 N 319 (320)
Q Consensus 319 ~ 319 (320)
+
T Consensus 140 ~ 140 (168)
T 1b7f_A 140 K 140 (168)
T ss_dssp S
T ss_pred C
Confidence 6
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-28 Score=193.74 Aligned_cols=132 Identities=20% Similarity=0.444 Sum_probs=119.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
++|||+|||.++++++|+++|++ ||.|.++.++.++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 48999999999999999999997 9999999999985 578999999999999999999999999999999999999976
Q ss_pred ccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeec
Q 020847 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~ 319 (320)
.... .....++|||+|||..+++++|+++|+.||.|.++.+.++ +|+|||+|.+
T Consensus 79 ~~~~-------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 138 (166)
T 3md3_A 79 SQQS-------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 138 (166)
T ss_dssp CCCC-------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESC
T ss_pred CCCC-------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCC
Confidence 6432 3345789999999999999999999999999999999644 6899999986
No 26
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=9.6e-29 Score=203.76 Aligned_cols=143 Identities=21% Similarity=0.426 Sum_probs=121.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+|||.++++++|+++|++ ||.|.+|.++++..+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAP-FGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 469999999999999999999997 9999999999998889999999999999999999999999999999999999988
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEeec
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFAN 319 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~~ 319 (320)
............. ......++|||+|||..+++++|+++|+.||.|.+++|.++ +|+|||+|.+
T Consensus 107 ~~~~~~~~~~~~~----------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 107 NIGQAQPIIDQLA----------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CCGGGHHHHHHHH----------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred Cccccchhhhhhh----------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 7654322111100 11235689999999999999999999999999999999765 7899999986
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=3.3e-28 Score=193.77 Aligned_cols=134 Identities=25% Similarity=0.535 Sum_probs=119.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhcCcccC---Ccce
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTG--RSKGYGFVRFGDESEQLRSMTEMNGVLCS---TRPM 239 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 239 (320)
.+++|||+|||.++++++|+++|++ ||.|.++.++++..+| .++|||||+|.+.++|.+|++.|+|..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQ-YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 3569999999999999999999998 9999999999998776 89999999999999999999999998775 6788
Q ss_pred EEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC-----ccEEE
Q 020847 240 RIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGF 314 (320)
Q Consensus 240 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~-----~~~af 314 (320)
.+.++...... ....++|||+|||..+++++|+++|+.||.|.++.+.++ +|+||
T Consensus 81 ~~~~~~~~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~af 140 (175)
T 3nmr_A 81 QMKPADSEKNN--------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAF 140 (175)
T ss_dssp EEEECGGGCCS--------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEE
T ss_pred EEccccccccc--------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEE
Confidence 88887655332 224678999999999999999999999999999999765 78999
Q ss_pred EEeec
Q 020847 315 VQFAN 319 (320)
Q Consensus 315 V~F~~ 319 (320)
|+|.+
T Consensus 141 V~f~~ 145 (175)
T 3nmr_A 141 VTFTT 145 (175)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99986
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=3.2e-28 Score=198.09 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=118.0
Q ss_pred CCceEEecCCC-CCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 165 PDFTIFVGDLA-ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 165 ~~~~l~v~nl~-~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
++++|||+||+ ..+++++|+++|+. ||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 45699999999 89999999999997 999999999865 389999999999999999999999999999999999
Q ss_pred CCcccccchhh----hhc---ccccCC-CC--------CCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCE--EEEE
Q 020847 244 AATKKAATGQQ----YQK---ATYQNT-QG--------SQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGEL--VHVK 305 (320)
Q Consensus 244 a~~~~~~~~~~----~~~---~~~~~~-~~--------~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i--~~v~ 305 (320)
++.+....... ... ...... .. .......+.++|||+|||+++++++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 97543211000 000 000000 00 001123567899999999999999999999999999 8999
Q ss_pred ecCC----ccEEEEEeec
Q 020847 306 IPAG----KRCGFVQFAN 319 (320)
Q Consensus 306 i~~~----~~~afV~F~~ 319 (320)
+.++ +|+|||+|.+
T Consensus 157 ~~~~~~~~~g~gfV~f~~ 174 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDS 174 (205)
T ss_dssp ECSCCSSSSEEEEEECSS
T ss_pred EEcCCCCCceEEEEEeCC
Confidence 8764 4899999986
No 29
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=3.1e-28 Score=192.49 Aligned_cols=131 Identities=27% Similarity=0.525 Sum_probs=118.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
++++|||+|||.++++++|+++|++ ||.|.++.+++++.+|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGK-YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTT-TCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 3569999999999999999999998 9999999999998899999999999999999999998 467899999999998
Q ss_pred CcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC------ccEEEEEee
Q 020847 245 ATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG------KRCGFVQFA 318 (320)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~------~~~afV~F~ 318 (320)
.++.... ..++|||+|||..+++++|+++|+.||.|.++.+.++ +|+|||+|.
T Consensus 79 ~~~~~~~---------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~ 137 (167)
T 2cjk_A 79 IPRDEQD---------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYD 137 (167)
T ss_dssp CCHHHHH---------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEES
T ss_pred cchhhcc---------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEEC
Confidence 7654322 2478999999999999999999999999999998754 589999998
Q ss_pred c
Q 020847 319 N 319 (320)
Q Consensus 319 ~ 319 (320)
+
T Consensus 138 ~ 138 (167)
T 2cjk_A 138 S 138 (167)
T ss_dssp S
T ss_pred C
Confidence 6
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.9e-27 Score=202.10 Aligned_cols=154 Identities=21% Similarity=0.390 Sum_probs=123.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHH----HHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~----~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
+..++++|||+|||.++++++|+ ++|++ ||.|.+|.+.+ +|+++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 34567899999999999999977 89997 99999998875 578999999999999999999999999999999
Q ss_pred ceEEccCCcccccchhhhhc--------------------c-ccc-----------------------------------
Q 020847 238 PMRIGPAATKKAATGQQYQK--------------------A-TYQ----------------------------------- 261 (320)
Q Consensus 238 ~i~v~~a~~~~~~~~~~~~~--------------------~-~~~----------------------------------- 261 (320)
.|+|.|++.+.......... . ...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999997765321100000 0 000
Q ss_pred ----------------------------------CCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEec
Q 020847 262 ----------------------------------NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIP 307 (320)
Q Consensus 262 ----------------------------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~ 307 (320)
...........+.++|||+|||..+++++|+++|+.||.|.+|+|.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000011234467899999999999999999999999999999998
Q ss_pred CCc-cEEEEEeec
Q 020847 308 AGK-RCGFVQFAN 319 (320)
Q Consensus 308 ~~~-~~afV~F~~ 319 (320)
+++ |+|||+|.+
T Consensus 241 ~~~~g~afV~f~~ 253 (282)
T 3pgw_A 241 PGRHDIAFVEFDN 253 (282)
T ss_pred cCCCcEEEEEeCC
Confidence 876 999999986
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=6.1e-27 Score=194.56 Aligned_cols=153 Identities=20% Similarity=0.335 Sum_probs=122.3
Q ss_pred CCCCCCceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 161 QDDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
....++++|||+|||. ++++++|+++|++ ||.|.+|.++++. +|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445678999999999 9999999999997 9999999998874 7899999999999999999999999999999
Q ss_pred EEccCCcccccchh----hhh-ccccc-----C----CCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCC-CEEEE
Q 020847 240 RIGPAATKKAATGQ----QYQ-KATYQ-----N----TQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHV 304 (320)
Q Consensus 240 ~v~~a~~~~~~~~~----~~~-~~~~~-----~----~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G-~i~~v 304 (320)
.|.|+......... ... ..... . ..........+.++|||+|||..+++++|+++|+.|| .|.++
T Consensus 103 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v 182 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGF 182 (229)
T ss_dssp EEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEE
T ss_pred EEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEE
Confidence 99999865321110 000 00000 0 0000112235679999999999999999999999999 99999
Q ss_pred Ee-cCCccEEEEEeec
Q 020847 305 KI-PAGKRCGFVQFAN 319 (320)
Q Consensus 305 ~i-~~~~~~afV~F~~ 319 (320)
+| .+++|+|||+|.+
T Consensus 183 ~i~~~~~g~afV~f~~ 198 (229)
T 2adc_A 183 KFFQKDRKMALIQMGS 198 (229)
T ss_dssp EECSSSTTCEEEEESS
T ss_pred EEEECCCcEEEEEECC
Confidence 99 4579999999986
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=1.4e-26 Score=188.16 Aligned_cols=148 Identities=20% Similarity=0.333 Sum_probs=119.5
Q ss_pred CceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 166 DFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 166 ~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
+++|||+|||. ++++++|+++|++ ||.|.+|.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 46999999999 9999999999997 9999999998764 789999999999999999999999999999999999
Q ss_pred Ccccccchhhhhc-----cc---------ccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCC-CEEEEEecC-
Q 020847 245 ATKKAATGQQYQK-----AT---------YQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYG-ELVHVKIPA- 308 (320)
Q Consensus 245 ~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G-~i~~v~i~~- 308 (320)
............. .. .............+.++|||+|||..+++++|+++|+.|| .|.+++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 8653221110000 00 0000011112345689999999999999999999999999 999999954
Q ss_pred CccEEEEEeec
Q 020847 309 GKRCGFVQFAN 319 (320)
Q Consensus 309 ~~~~afV~F~~ 319 (320)
++|+|||+|.+
T Consensus 157 ~~g~afV~f~~ 167 (198)
T 1qm9_A 157 DRKMALIQMGS 167 (198)
T ss_dssp TSSCEEEECSS
T ss_pred CCcEEEEEeCC
Confidence 78999999986
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=2.5e-26 Score=182.42 Aligned_cols=127 Identities=20% Similarity=0.467 Sum_probs=111.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhC----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVY----S-------SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
+.++|||+|||.++++++|+++|++ | | .|.++.+. .++|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHH-HhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 3569999999999999999999998 8 6 56666554 34899999999999999999 899999
Q ss_pred cCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC----
Q 020847 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (320)
Q Consensus 234 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~---- 309 (320)
+.|+.|.|.++...... ...++|||+|||..+++++|+++|+.||.|.++.+.++
T Consensus 75 ~~g~~i~v~~~~~~~~~---------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 133 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL---------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 133 (172)
T ss_dssp ETTEECEEECCSSCCCC---------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC
T ss_pred ecCceeeecCCcccCCC---------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 99999999998755322 23689999999999999999999999999999999665
Q ss_pred --ccEEEEEeecC
Q 020847 310 --KRCGFVQFANR 320 (320)
Q Consensus 310 --~~~afV~F~~~ 320 (320)
+|+|||+|.+.
T Consensus 134 ~~~g~afV~f~~~ 146 (172)
T 2g4b_A 134 LSKGYAFCEYVDI 146 (172)
T ss_dssp SEEEEEEEEESST
T ss_pred CcceEEEEEeCCH
Confidence 68999999874
No 34
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=3.2e-26 Score=193.94 Aligned_cols=123 Identities=27% Similarity=0.536 Sum_probs=113.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++|+++|+++|++ ||.|.+|.+.++ +|||||+|.+.++|.+|+..|||..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 445679999999999999999999997 999999998643 7899999999999999999999999999999999
Q ss_pred cCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC-----ccEEEEEe
Q 020847 243 PAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG-----KRCGFVQF 317 (320)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~-----~~~afV~F 317 (320)
|+.+ .++|||+|||..+++++|+++|+.||.|.+|.|.++ +|+|||+|
T Consensus 92 ~a~~---------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f 144 (261)
T 3sde_A 92 FATH---------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEF 144 (261)
T ss_dssp ECCC---------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEE
T ss_pred eccc---------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEe
Confidence 9863 368999999999999999999999999999998654 79999999
Q ss_pred ec
Q 020847 318 AN 319 (320)
Q Consensus 318 ~~ 319 (320)
.+
T Consensus 145 ~~ 146 (261)
T 3sde_A 145 AA 146 (261)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=4.7e-27 Score=187.19 Aligned_cols=136 Identities=19% Similarity=0.356 Sum_probs=115.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|+. ||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|||..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 3445789999999999999999999997 988776 33344457889999999999999999999 59999999999999
Q ss_pred ccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEe-cCCccEEEEEeec
Q 020847 242 GPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKI-PAGKRCGFVQFAN 319 (320)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i-~~~~~~afV~F~~ 319 (320)
.++..+... .....++|||+|||..+++++|+++|+.||.|..+.. .+.+|+|||+|.+
T Consensus 86 ~~~~~~~~~-------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 86 EKPKGRDSK-------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKS 145 (175)
T ss_dssp ECCCCSSCS-------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSS
T ss_pred ecCCCcccc-------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECC
Confidence 999876432 2235689999999999999999999999999988811 2357999999986
No 36
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=7.1e-26 Score=183.95 Aligned_cols=147 Identities=17% Similarity=0.358 Sum_probs=115.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCC-----------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYS-----------SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g-----------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.+++|||+|||.++++++|+++|++ || .|.++.+ +.++|||||+|.+.++|.+|+ .|||..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHH-HHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHH-HHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3569999999999999999999997 94 4555544 456899999999999999999 899999
Q ss_pred cCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCC----
Q 020847 234 CSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAG---- 309 (320)
Q Consensus 234 ~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~---- 309 (320)
+.|+.|.|.++............ .................++|||+|||..+++++|+++|+.||.|.++.+.++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~ 153 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSEN-PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG 153 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSC-SSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC
T ss_pred EcCceEEEeCCCCCCCCCCCcCC-CcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC
Confidence 99999999998876433221100 0001111122233467799999999999999999999999999999999755
Q ss_pred --ccEEEEEeecC
Q 020847 310 --KRCGFVQFANR 320 (320)
Q Consensus 310 --~~~afV~F~~~ 320 (320)
+|+|||+|.+.
T Consensus 154 ~~~g~afV~f~~~ 166 (198)
T 2yh0_A 154 LSKGYAFCEYVDI 166 (198)
T ss_dssp SEEEEEEEEESSS
T ss_pred CcceEEEEEECCH
Confidence 68999999873
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=6.7e-25 Score=171.65 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=114.7
Q ss_pred EEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc-----eEeec-cCCCCCCCCCCCCCCceEEecCCC
Q 020847 102 SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN-----FRLNW-ATYGAGERRQDDGPDFTIFVGDLA 175 (320)
Q Consensus 102 ~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~l~v~nl~ 175 (320)
.++++.+.. .++|||||+|.+.++|++|+..+++......... ..... ................+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 466777643 5899999999999999999988875432111111 11111 111111222334457899999999
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccccc
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 250 (320)
.++++++|+++|++ ||.|..+.++.|..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|++++...
T Consensus 80 ~~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 99999999999997 999999999999889999999999999999999999999999999999999999877544
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=3.6e-24 Score=157.95 Aligned_cols=109 Identities=28% Similarity=0.527 Sum_probs=75.6
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
+.+|||+|||.++++++|+++|++ ||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 458999999999999999999997 9999999999985 5589999999999999999999999999999999999998
Q ss_pred cccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHH
Q 020847 246 TKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDI 290 (320)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 290 (320)
++...... ........++|||+|||+++|++-
T Consensus 82 ~~~~~~~~-------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE-------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-----------------------------------------
T ss_pred Cccccccc-------------cccccCCCCceEeCCCCCCccccc
Confidence 76543321 111223446799999999998863
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=5.3e-23 Score=159.28 Aligned_cols=128 Identities=22% Similarity=0.344 Sum_probs=110.8
Q ss_pred CCccCeEEEEEcCHHHHHHHHHHh-cCCCCCCCCcceEeeccCCCC-----------CCCCCCCCCCceEEecCCCCCCC
Q 020847 112 NFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQNFRLNWATYGA-----------GERRQDDGPDFTIFVGDLAADVT 179 (320)
Q Consensus 112 ~~~~g~afv~f~~~~~A~~a~~~l-~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~v~nl~~~~t 179 (320)
...+|+++|+|.+.++|++|++.+ ||..++| .+.+.++.... ..........++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 346899999999999999999999 9999965 67777765321 12233445678999999999999
Q ss_pred HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccc
Q 020847 180 DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 180 ~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
+++|+++|++ ||.|.++.++++ ++|||||+|.+.++|.+|++.|||..++|+.|+|.|++++.
T Consensus 87 ~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGY-YGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHH-HSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHh-hCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999998 999999999876 58999999999999999999999999999999999998763
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=144.01 Aligned_cols=80 Identities=25% Similarity=0.492 Sum_probs=77.3
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+|||.++|+++|+++|++ ||.|.++.+++|+.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.||+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 468999999999999999999998 9999999999999899999999999999999999999999999999999999997
Q ss_pred c
Q 020847 246 T 246 (320)
Q Consensus 246 ~ 246 (320)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=4.7e-22 Score=146.56 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
...+|||+|||+++|+++|+++|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|+|..+ .++.|.+.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 45689999999999999999999999999999999985 34799999999999999999999999999 556777777
Q ss_pred cCCCCCCC---CCCCCCCceEEecCCCCCCCHHH
Q 020847 152 ATYGAGER---RQDDGPDFTIFVGDLAADVTDYV 182 (320)
Q Consensus 152 ~~~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~ 182 (320)
+....... .......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 65433211 11233446799999999999863
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-22 Score=140.68 Aligned_cols=85 Identities=13% Similarity=0.275 Sum_probs=78.0
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc-CcccCCcceEEcc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN-GVLCSTRPMRIGP 243 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~-g~~~~g~~i~v~~ 243 (320)
+++|||+|||.++|+++|+++|++ || .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.++ +..++|+.|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 359999999999999999999998 99 79999999999999999999999999999999999874 5679999999999
Q ss_pred CCcccccc
Q 020847 244 AATKKAAT 251 (320)
Q Consensus 244 a~~~~~~~ 251 (320)
+.++....
T Consensus 80 a~~~~~~~ 87 (91)
T 2lxi_A 80 SDPKPKIN 87 (91)
T ss_dssp CCSCCCCS
T ss_pred cCCCCCCC
Confidence 99876543
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=5.6e-22 Score=150.22 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=83.6
Q ss_pred cCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCe
Q 020847 115 EGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV 194 (320)
Q Consensus 115 ~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i 194 (320)
.-++|++|++...+..|+..++|....+.+. ..+ ..........++|||+|||.++++++|+++|++ ||.|
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i 74 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEK-YGRV 74 (135)
T ss_dssp ----------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGG-GSCC
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC---CCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCE
Confidence 4578899999999999999998876543321 111 122334445679999999999999999999998 9999
Q ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccccc
Q 020847 195 KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 195 ~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 250 (320)
..|.++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+++....
T Consensus 75 ~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 75 GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp SEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999888999999999999999999999999999999999999999877544
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=140.25 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=81.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.+.++|||+||+.++++++|+++|++ ||.|.+|.|++|..+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35679999999999999999999998 99999999999998999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 020847 244 AATKKAAT 251 (320)
Q Consensus 244 a~~~~~~~ 251 (320)
+.......
T Consensus 83 a~~~~~~~ 90 (110)
T 3s8s_A 83 DIKGQQRM 90 (110)
T ss_dssp CSTTHHHH
T ss_pred CCCCcHHH
Confidence 98765443
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=137.46 Aligned_cols=80 Identities=15% Similarity=0.326 Sum_probs=74.8
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----ccCCcce
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSS--VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV----LCSTRPM 239 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~~g~~i 239 (320)
=++|||+|||+++|+++|+++|++ ||. +.+|++++|+.+|.+||||||+|.+.++|.+|++.|||. .++||+|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 359999999999999999999998 995 679999999999999999999999999999999999997 4899999
Q ss_pred EEccCCc
Q 020847 240 RIGPAAT 246 (320)
Q Consensus 240 ~v~~a~~ 246 (320)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 46
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=143.29 Aligned_cols=85 Identities=25% Similarity=0.488 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999 5677888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 8876543
No 47
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.84 E-value=1.3e-20 Score=148.05 Aligned_cols=130 Identities=19% Similarity=0.289 Sum_probs=80.7
Q ss_pred EEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCC---------------CCCCCCCCCCCceEEecCCCCCCCHHHHH
Q 020847 120 IEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYG---------------AGERRQDDGPDFTIFVGDLAADVTDYVLQ 184 (320)
Q Consensus 120 v~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 184 (320)
.+|.+.++|..|+..+++.....+++.....+.... .........+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 678999999999999988777544554544432211 01112234456789999999999999999
Q ss_pred HHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccccc
Q 020847 185 ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 185 ~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~~ 250 (320)
++|++ ||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.++...
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99998 999999999999889999999999999999999999999999999999999999877544
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.4e-20 Score=129.25 Aligned_cols=81 Identities=38% Similarity=0.652 Sum_probs=77.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
.+|||+|||.++++++|+++|++ ||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999997 99999999999988999999999999999999999999999999999999999987
Q ss_pred cc
Q 020847 247 KK 248 (320)
Q Consensus 247 ~~ 248 (320)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=130.89 Aligned_cols=83 Identities=35% Similarity=0.641 Sum_probs=76.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.+.++|||+|||.++++++|+++|++ ||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34679999999999999999999997 99999999999988999999999999999999999999999999999999999
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9865
No 50
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=9.8e-21 Score=139.70 Aligned_cols=104 Identities=16% Similarity=0.297 Sum_probs=93.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.++++|||+|||.++++++|+++|++ ||.|.++.++.+ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45679999999999999999999997 999999999875 55699999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCCHHHHHHHhccCCC
Q 020847 244 AATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGE 300 (320)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~L~~~f~~~G~ 300 (320)
+.++... .+++...++++|.++|+.||.
T Consensus 82 a~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9865432 467788899999999999974
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=8.1e-21 Score=133.64 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=72.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.+|||+|||.++++++|+++|++ || .|.++.++.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 48999999999999999999997 99 9999999999889999999999999999999999999999999999999999
Q ss_pred Ccccc
Q 020847 245 ATKKA 249 (320)
Q Consensus 245 ~~~~~ 249 (320)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87754
No 52
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=134.15 Aligned_cols=82 Identities=30% Similarity=0.507 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++|+++|+++|+.||.|.+|++++|+.+|.++|||||+|.+.++|.+|++.|||..+ .++.|++.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999 56788888
Q ss_pred ccCC
Q 020847 151 WATY 154 (320)
Q Consensus 151 ~~~~ 154 (320)
|+.+
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8753
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=8.2e-20 Score=134.71 Aligned_cols=91 Identities=33% Similarity=0.592 Sum_probs=84.1
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 160 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
.....+.++|||+|||.++++++|+++|+. ||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567789999999999999999999997 9999999999998899999999999999999999999999999999999
Q ss_pred EEccCCcccccc
Q 020847 240 RIGPAATKKAAT 251 (320)
Q Consensus 240 ~v~~a~~~~~~~ 251 (320)
+|.|++++....
T Consensus 88 ~V~~a~~~~~~~ 99 (115)
T 2dgo_A 88 RTNWATRKPPAP 99 (115)
T ss_dssp EEEESSCCCCCS
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3e-20 Score=132.46 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=81.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
++++|||+|||.++++++|+++|++ ||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 3569999999999999999999998 999999999999888999999999999999999999999999999999999999
Q ss_pred Ccccccc
Q 020847 245 ATKKAAT 251 (320)
Q Consensus 245 ~~~~~~~ 251 (320)
.++....
T Consensus 80 ~~~~~~~ 86 (96)
T 2x1f_A 80 SNSDISG 86 (96)
T ss_dssp SCSSGGG
T ss_pred CCCCCCC
Confidence 9886554
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=130.67 Aligned_cols=86 Identities=24% Similarity=0.431 Sum_probs=80.5
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 160 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
.....+.++|||+|||.++++++|+++|++ ||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566789999999999999999999998 9999999999998889999999999999999999999999999999999
Q ss_pred EEccCCc
Q 020847 240 RIGPAAT 246 (320)
Q Consensus 240 ~v~~a~~ 246 (320)
+|.|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=8.5e-20 Score=132.75 Aligned_cols=87 Identities=28% Similarity=0.636 Sum_probs=81.5
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999999999999999997 99999999999988999999999999999999999999999999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.+++++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998763
No 57
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.5e-20 Score=130.46 Aligned_cols=86 Identities=30% Similarity=0.615 Sum_probs=80.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.++++|||+|||.++++++|+++|++ ||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999998 99999999999988899999999999999999999999999999999999999
Q ss_pred CCccccc
Q 020847 244 AATKKAA 250 (320)
Q Consensus 244 a~~~~~~ 250 (320)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887544
No 58
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=130.64 Aligned_cols=86 Identities=22% Similarity=0.427 Sum_probs=80.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..+.+..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456789999999999999999999998 9999999999997 8999999999999999999999999999999999999
Q ss_pred ccCCcccc
Q 020847 242 GPAATKKA 249 (320)
Q Consensus 242 ~~a~~~~~ 249 (320)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99987753
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.9e-20 Score=133.11 Aligned_cols=90 Identities=26% Similarity=0.417 Sum_probs=83.3
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 160 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
.....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 344566789999999999999999999998 9999999999998899999999999999999999999999999999999
Q ss_pred EEccCCccccc
Q 020847 240 RIGPAATKKAA 250 (320)
Q Consensus 240 ~v~~a~~~~~~ 250 (320)
+|.|++++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999887543
No 60
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=7e-20 Score=135.07 Aligned_cols=89 Identities=22% Similarity=0.402 Sum_probs=82.5
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456689999999999999999999997 99999999999988999999999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999987544
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=132.05 Aligned_cols=87 Identities=24% Similarity=0.393 Sum_probs=81.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345679999999999999999999997 9999999999998899999999999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
+++++...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99987654
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=131.25 Aligned_cols=87 Identities=21% Similarity=0.391 Sum_probs=80.8
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|.++.++.++.++.++|||||+|.+.++|.+|++ |++..++|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3445679999999999999999999998 9999999999998889999999999999999999998 9999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.+++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999987554
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=3.9e-20 Score=128.77 Aligned_cols=81 Identities=25% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.+.++|||+|||.++++++|+++|++ ||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999998 99999999999988999999999999999999999999999999999999999
Q ss_pred CC
Q 020847 244 AA 245 (320)
Q Consensus 244 a~ 245 (320)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=132.96 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=80.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..++++|||+|||.++++++|+++|++ ||.|..|.+..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 445689999999999999999999997 9999999999998899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=132.84 Aligned_cols=89 Identities=28% Similarity=0.484 Sum_probs=82.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..|.++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456789999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999887543
No 66
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.2e-20 Score=135.34 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=79.7
Q ss_pred CCCceEEecCCCC------CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC-
Q 020847 164 GPDFTIFVGDLAA------DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST- 236 (320)
Q Consensus 164 ~~~~~l~v~nl~~------~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g- 236 (320)
..+++|||+|||. ++++++|+++|++ ||.|.++.|++++.+|+++|||||+|.+.++|.+|++.|||..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457999999999 9999999999998 9999999999999889999999999999999999999999999999
Q ss_pred cceEEccCCcccc
Q 020847 237 RPMRIGPAATKKA 249 (320)
Q Consensus 237 ~~i~v~~a~~~~~ 249 (320)
+.|+|.++.++..
T Consensus 83 r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 83 HRLFLYTMKDVER 95 (100)
T ss_dssp CBCEEEESHHHHH
T ss_pred eEEEEEECchhhh
Confidence 9999999987643
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=9.3e-20 Score=136.77 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=81.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999997 99999999999988899999999999999999999999999999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.|++++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 68
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=133.08 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=82.4
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..++|+.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34456789999999999999999999997 99999999999988899999999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876544
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=129.59 Aligned_cols=83 Identities=28% Similarity=0.390 Sum_probs=78.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
...+.++|||+|||.++++++|+++|++ ||.|.. +.++.++.+|.++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 3455679999999999999999999998 999999 9999998899999999999999999999999999999
Q ss_pred cCCcceEEccCC
Q 020847 234 CSTRPMRIGPAA 245 (320)
Q Consensus 234 ~~g~~i~v~~a~ 245 (320)
++|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 70
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=129.71 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=78.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..+.+..++.++.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 33456789999999999999999999997 99999999999988899999999999999999999999999999999999
Q ss_pred EccCC
Q 020847 241 IGPAA 245 (320)
Q Consensus 241 v~~a~ 245 (320)
|.|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 71
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-20 Score=132.60 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=82.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 446789999999999999999999998 9999999999998889999999999999999999999999999999999999
Q ss_pred cCCcccccc
Q 020847 243 PAATKKAAT 251 (320)
Q Consensus 243 ~a~~~~~~~ 251 (320)
|++++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 999876543
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=2e-19 Score=130.44 Aligned_cols=87 Identities=23% Similarity=0.407 Sum_probs=80.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC---cc
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST---RP 238 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g---~~ 238 (320)
...+.++|||+|||.++++++|+++|++ ||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 3456789999999999999999999997 9999999999996 79999999999999999999999999999988 99
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|.|.|++++...
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999987644
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=131.51 Aligned_cols=88 Identities=31% Similarity=0.529 Sum_probs=81.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445679999999999999999999997 999999999999888999999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999877543
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=131.58 Aligned_cols=90 Identities=16% Similarity=0.320 Sum_probs=82.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTD-RTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRP 238 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~ 238 (320)
......++|||+|||.++++++|+++|++ ||.|..|.++.+ ..++.++|||||+|.+.++|.+|++.| ||..+.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34556789999999999999999999998 999999999998 678999999999999999999999999 999999999
Q ss_pred eEEccCCcccccc
Q 020847 239 MRIGPAATKKAAT 251 (320)
Q Consensus 239 i~v~~a~~~~~~~ 251 (320)
|+|.|++++....
T Consensus 89 l~v~~a~~~~~~~ 101 (107)
T 2cph_A 89 LVLEWADSEVTVQ 101 (107)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 75
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=130.91 Aligned_cols=86 Identities=29% Similarity=0.541 Sum_probs=80.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA-KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
.+.++|||+|||.++++++|+++|++ ||.|..+ .++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34679999999999999999999998 9999999 999998899999999999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|+.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887544
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=130.19 Aligned_cols=88 Identities=31% Similarity=0.564 Sum_probs=81.0
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.+ ++.++|||||+|.+.++|.+|++.|||..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34456789999999999999999999997 999999999998 789999999999999999999999999999999999
Q ss_pred EccCCcccccc
Q 020847 241 IGPAATKKAAT 251 (320)
Q Consensus 241 v~~a~~~~~~~ 251 (320)
|.|++++....
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2d9p_A 87 VALAQRKEERQ 97 (103)
T ss_dssp EEECSSCCCCC
T ss_pred EEEecccccCC
Confidence 99999876543
No 77
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.2e-19 Score=131.81 Aligned_cols=89 Identities=20% Similarity=0.469 Sum_probs=82.1
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc---CCc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC---STR 237 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---~g~ 237 (320)
......++|||+|||.++++++|+++|++ ||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..+ .|+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556789999999999999999999998 99999999999988899999999999999999999999999987 899
Q ss_pred ceEEccCCccccc
Q 020847 238 PMRIGPAATKKAA 250 (320)
Q Consensus 238 ~i~v~~a~~~~~~ 250 (320)
.|+|.|++++...
T Consensus 87 ~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 87 PIQVKPADSESRG 99 (106)
T ss_dssp CCEEEECCCCSCC
T ss_pred eEEEEECCccccc
Confidence 9999999987544
No 78
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=131.91 Aligned_cols=89 Identities=24% Similarity=0.390 Sum_probs=82.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc------Cccc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN------GVLC 234 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~------g~~~ 234 (320)
....+.++|||+|||.++++++|+++|++ ||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|| |..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34456789999999999999999999997 9999999999998889999999999999999999999999 9999
Q ss_pred CCcceEEccCCccccc
Q 020847 235 STRPMRIGPAATKKAA 250 (320)
Q Consensus 235 ~g~~i~v~~a~~~~~~ 250 (320)
+|+.|+|.|+.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999987544
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=129.53 Aligned_cols=84 Identities=21% Similarity=0.423 Sum_probs=79.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc----
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVK-GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP---- 238 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~---- 238 (320)
...++|||+|||.++++++|+++|++ ||.|. ++.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45679999999999999999999998 99999 9999999889999999999999999999999999999999999
Q ss_pred eEEccCCccc
Q 020847 239 MRIGPAATKK 248 (320)
Q Consensus 239 i~v~~a~~~~ 248 (320)
|+|.|+++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999998764
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=130.14 Aligned_cols=86 Identities=14% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRT---TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
.+.++|||+|||.++++++|+++|++ ||.|..|.+..+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35679999999999999999999997 99999999999865 558999999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887544
No 81
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=131.42 Aligned_cols=100 Identities=16% Similarity=0.338 Sum_probs=84.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
++|||+|||.++++++|+++|++ ||.|.++.+..+ ++|||||+|.+.++|.+|++.|||..++|+.|+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 38999999999999999999998 999999999876 689999999999999999999999999999999999998
Q ss_pred ccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCC
Q 020847 247 KKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLD 283 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 283 (320)
+...... ............|||+||+
T Consensus 75 ~~~~~~~-----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 75 MPRRSRF-----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCCSSCC-----------CSCCCSCCCCSCCCSCCCC
T ss_pred CCCcccC-----------CCCCccccCCCceecCCCC
Confidence 7533211 0111222446789999997
No 82
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.2e-19 Score=132.62 Aligned_cols=86 Identities=23% Similarity=0.402 Sum_probs=80.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3455689999999999999999999998 999999999999889999999999999999999999999999999999999
Q ss_pred ccCCccc
Q 020847 242 GPAATKK 248 (320)
Q Consensus 242 ~~a~~~~ 248 (320)
.|+.++.
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9998764
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=132.34 Aligned_cols=85 Identities=19% Similarity=0.428 Sum_probs=79.6
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|||+|||.++++++|+++|++ ||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34579999999999999999999998 9999999999997 899999999999999999999999999999999999999
Q ss_pred CCccccc
Q 020847 244 AATKKAA 250 (320)
Q Consensus 244 a~~~~~~ 250 (320)
++.+...
T Consensus 83 a~~~~~~ 89 (116)
T 2fy1_A 83 AKKPSFQ 89 (116)
T ss_dssp CCCSSCS
T ss_pred CCCCCCC
Confidence 9877544
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=140.34 Aligned_cols=84 Identities=23% Similarity=0.344 Sum_probs=78.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..++|||+|||+++++++|+++|++ || .|.+|.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3469999999999999999999997 99 99999999999999999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
++.++..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9987643
No 85
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=128.71 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=73.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--cccCCcceE
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRPMR 240 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~i~ 240 (320)
..+.++|||+|||+++++++|+++|++ ||.|.+|.|+++ ||||||+|.+.++|.+|++.|++ ..+.|++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345679999999999999999999998 999999999865 78999999999999999998864 789999999
Q ss_pred EccCCcccccc
Q 020847 241 IGPAATKKAAT 251 (320)
Q Consensus 241 v~~a~~~~~~~ 251 (320)
|.|++.+....
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998875543
No 86
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.3e-19 Score=128.75 Aligned_cols=87 Identities=23% Similarity=0.488 Sum_probs=80.0
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ || |..|.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34456789999999999999999999998 96 999999999888999999999999999999999 8999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.+++++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999887544
No 87
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=127.59 Aligned_cols=83 Identities=28% Similarity=0.515 Sum_probs=77.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|.++.+..+.. |.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 3445689999999999999999999998 99999999999964 899999999999999999999999999999999999
Q ss_pred ccCCc
Q 020847 242 GPAAT 246 (320)
Q Consensus 242 ~~a~~ 246 (320)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99874
No 88
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=136.07 Aligned_cols=88 Identities=25% Similarity=0.475 Sum_probs=82.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|++|.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455679999999999999999999998 999999999999888999999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++.+...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999987544
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=131.53 Aligned_cols=89 Identities=22% Similarity=0.306 Sum_probs=82.4
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK--------GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV 232 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 232 (320)
......++|||+|||.++++++|+++|++ ||.|. .|.|+.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999998 99999 6999999889999999999999999999999999999
Q ss_pred ccCCcceEEccCCccccc
Q 020847 233 LCSTRPMRIGPAATKKAA 250 (320)
Q Consensus 233 ~~~g~~i~v~~a~~~~~~ 250 (320)
.+.|+.|+|.+++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999999999987654
No 90
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=126.59 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=72.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--cCCcce
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPM 239 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i 239 (320)
...++++|||+|||.++++++|+++|++ ||.|.++.++++ ||+|||+|.+.++|.+|++.|+|.. +.|++|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456789999999999999999999998 999999998753 7899999999999999999999876 789999
Q ss_pred EEccCCccc
Q 020847 240 RIGPAATKK 248 (320)
Q Consensus 240 ~v~~a~~~~ 248 (320)
.|.|++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998764
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=128.64 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=79.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445679999999999999999999998 999999988888889999999999999999999999999999999999999
Q ss_pred ccCCcc
Q 020847 242 GPAATK 247 (320)
Q Consensus 242 ~~a~~~ 247 (320)
.++..+
T Consensus 90 ~~a~~~ 95 (98)
T 2cqp_A 90 VLGSGP 95 (98)
T ss_dssp EESSCS
T ss_pred EEcCCC
Confidence 998754
No 92
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.5e-19 Score=133.94 Aligned_cols=84 Identities=27% Similarity=0.440 Sum_probs=78.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556789999999999999999999997 99999999999988899999999999999999999999999999999999
Q ss_pred EccCC
Q 020847 241 IGPAA 245 (320)
Q Consensus 241 v~~a~ 245 (320)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=126.41 Aligned_cols=83 Identities=22% Similarity=0.379 Sum_probs=76.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR-SKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
..++|||+|||.++++++|+++|++ ||.|.++.+..+..++. ++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3569999999999999999999998 99999999999876655 899999999999999999999999999999999999
Q ss_pred CCccc
Q 020847 244 AATKK 248 (320)
Q Consensus 244 a~~~~ 248 (320)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98764
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=129.37 Aligned_cols=86 Identities=24% Similarity=0.505 Sum_probs=79.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT-GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...+.++|||+|||.++++++|+++|+. || |..|.|+.+..+ |.++|||||+|.+.++|.+|+ .|||..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456789999999999999999999998 99 999999999877 999999999999999999999 9999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.+++++...
T Consensus 88 V~~a~~~~~~ 97 (104)
T 1wi8_A 88 VDVADQAQDK 97 (104)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCCCCC
Confidence 9999987554
No 95
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=129.94 Aligned_cols=85 Identities=33% Similarity=0.581 Sum_probs=80.6
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 469999999999999999999998 9999999999998899999999999999999999999999999999999999999
Q ss_pred cccccc
Q 020847 246 TKKAAT 251 (320)
Q Consensus 246 ~~~~~~ 251 (320)
++....
T Consensus 87 ~~~~~~ 92 (104)
T 1p1t_A 87 SEKNKE 92 (104)
T ss_dssp CTTHHH
T ss_pred Cccchh
Confidence 876554
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=3.4e-19 Score=125.11 Aligned_cols=80 Identities=24% Similarity=0.485 Sum_probs=76.5
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
.++|||+|||.++++++|+++|++ ||.|.++.+..+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 459999999999999999999997 999999999999889999999999999999999999 999999999999999998
Q ss_pred cc
Q 020847 246 TK 247 (320)
Q Consensus 246 ~~ 247 (320)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=129.28 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=81.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..|.++.++.++.++|||||+|.+.++|.+|++. ++..++|+.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34556789999999999999999999998 99999999999988999999999999999999999998 99999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9999987644
No 98
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=127.91 Aligned_cols=88 Identities=49% Similarity=0.835 Sum_probs=80.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc-cCCcceE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL-CSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g~~i~ 240 (320)
...+.++|||+|||.++++++|+++|++.||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|||.. ++|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 345667999999999999999999999339999999999997 89999999999999999999999999999 9999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999877544
No 99
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=128.51 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=75.9
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|||+|||.++|+++|+++|++ ||.|.+|.++++.. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34579999999999999999999998 99999999999976 9999999999999999999998 899999999999998
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
+...
T Consensus 86 ~~~~ 89 (103)
T 1s79_A 86 KDDY 89 (103)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8764
No 100
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5.7e-19 Score=128.41 Aligned_cols=82 Identities=33% Similarity=0.464 Sum_probs=77.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||..+++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456789999999999999999999997 9999999999997 8999999999999999999999999999999999999
Q ss_pred ccCC
Q 020847 242 GPAA 245 (320)
Q Consensus 242 ~~a~ 245 (320)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=126.50 Aligned_cols=82 Identities=22% Similarity=0.396 Sum_probs=77.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35679999999999999999999997 99999999999988999999999999999999999999999999999999988
Q ss_pred CCc
Q 020847 244 AAT 246 (320)
Q Consensus 244 a~~ 246 (320)
+..
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 102
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=9.9e-20 Score=137.36 Aligned_cols=88 Identities=15% Similarity=0.302 Sum_probs=80.8
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc----cc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV----LC 234 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~----~~ 234 (320)
......++|||+|||+++++++|+++|++ ||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|||. .+
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 34456789999999999999999999997 999976 99999988999999999999999 999999999999 99
Q ss_pred CCcceEEccCCccccc
Q 020847 235 STRPMRIGPAATKKAA 250 (320)
Q Consensus 235 ~g~~i~v~~a~~~~~~ 250 (320)
+|+.|+|.|+++....
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999876443
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.7e-19 Score=126.51 Aligned_cols=87 Identities=26% Similarity=0.477 Sum_probs=78.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34456789999999999999999999997 9999999999985 33689999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999986544
No 104
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=129.27 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=74.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||+++++++|+++|+.||.|.+|+|+.|+.+|.++|||||+|.+.++|.+|++.|||..+ .++.|++.+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~~ 82 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQL 82 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999999999 556677766
Q ss_pred cC
Q 020847 152 AT 153 (320)
Q Consensus 152 ~~ 153 (320)
+.
T Consensus 83 a~ 84 (110)
T 3s8s_A 83 DI 84 (110)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=125.98 Aligned_cols=88 Identities=17% Similarity=0.400 Sum_probs=79.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999997 9999999999885 34899999999999999999999999999999999
Q ss_pred EccCCcccccc
Q 020847 241 IGPAATKKAAT 251 (320)
Q Consensus 241 v~~a~~~~~~~ 251 (320)
|.|+.++....
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99999876543
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6.7e-19 Score=124.36 Aligned_cols=83 Identities=28% Similarity=0.378 Sum_probs=77.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
.+.++|||+|||.++++++|+++|++ ||.|..+.+.++ +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999998 999999999885 688999999999999999999999999999999999999
Q ss_pred CCcccc
Q 020847 244 AATKKA 249 (320)
Q Consensus 244 a~~~~~ 249 (320)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987653
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=123.98 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=76.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++++++|+++|+. | .|.++.++++ .+|.++|||||+|.+.++|.+|++ |||..++|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 345679999999999999999999998 9 9999999999 789999999999999999999999 99999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 108
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=129.96 Aligned_cols=86 Identities=31% Similarity=0.443 Sum_probs=80.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
....+++|||+|||.++++++|+++|++ ||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456789999999999999999999998 9999999999997 8999999999999999999999999999999999999
Q ss_pred ccCCcccc
Q 020847 242 GPAATKKA 249 (320)
Q Consensus 242 ~~a~~~~~ 249 (320)
.|+.....
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987643
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=129.37 Aligned_cols=87 Identities=10% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CcccCCcce
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVV-TDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLCSTRPM 239 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~~i 239 (320)
.+.++|||+|||.++++++|+++|++ ||. |.++.++ .+..+|.++|||||+|.+.++|.+|++.|+ +..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 35679999999999999999999998 998 9999998 787788999999999999999999999996 589999999
Q ss_pred EEccCCcccccc
Q 020847 240 RIGPAATKKAAT 251 (320)
Q Consensus 240 ~v~~a~~~~~~~ 251 (320)
+|.|++++....
T Consensus 85 ~V~~a~~~~~~~ 96 (109)
T 2dis_A 85 AVDWAEPEIDVD 96 (109)
T ss_dssp EEEESCSSCSTT
T ss_pred EEEEcCCCCCcC
Confidence 999999876544
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2.3e-19 Score=127.60 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=76.0
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|||+|||.++++++|+++|++ ||.|..+.++.+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34579999999999999999999998 99999999999888999999999999999999999999999999999999999
Q ss_pred CCc
Q 020847 244 AAT 246 (320)
Q Consensus 244 a~~ 246 (320)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 111
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=6.6e-19 Score=123.05 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=75.1
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..++|+.|+|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 3456679999999999999999999997 9999999999998899999999999999999999995 5888999999999
Q ss_pred ccC
Q 020847 242 GPA 244 (320)
Q Consensus 242 ~~a 244 (320)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 876
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=3.9e-19 Score=120.83 Aligned_cols=73 Identities=8% Similarity=0.155 Sum_probs=69.1
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAA 245 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 245 (320)
+..|+|+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|.+|++.|||..++|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 458999999999999999999998 99999999864 59999999999999999999999999999999999994
No 113
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-18 Score=127.04 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=79.6
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 3445779999999999999999999997 9999999999996 6999999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.+++.....
T Consensus 89 ~~a~~~~~~ 97 (114)
T 2do0_A 89 KMDERALPK 97 (114)
T ss_dssp EECSCCCCC
T ss_pred EEcccCCCC
Confidence 999865443
No 114
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.3e-19 Score=121.69 Aligned_cols=75 Identities=27% Similarity=0.411 Sum_probs=71.9
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
+|||+|||.++++++|+++|++ ||.|.++.+..++.+|.++|||||+|.+.++|.+|++ |||..++|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999998 9999999999998889999999999999999999997 9999999999999986
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.1e-19 Score=128.35 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--cccCCcc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRP 238 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~ 238 (320)
....++++|||+|||+++++++|+++|++ ||.|.+|.|+++ ||||||+|.+.++|.+|++.|++ ..+.|++
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 34456789999999999999999999998 999999999875 79999999999999999999874 6899999
Q ss_pred eEEccCCcccccc
Q 020847 239 MRIGPAATKKAAT 251 (320)
Q Consensus 239 i~v~~a~~~~~~~ 251 (320)
|+|.|++.+....
T Consensus 99 l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 99 IYIQFSNHKELKT 111 (119)
T ss_dssp CEEEECSSSSCCC
T ss_pred EEEEEccCCCCCc
Confidence 9999998775543
No 116
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7e-19 Score=129.87 Aligned_cols=86 Identities=34% Similarity=0.517 Sum_probs=79.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|.+|.|++++.++.++|||||+|.+.++|.+|++.|++ .+.|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34456789999999999999999999997 99999999999988899999999999999999999999998 89999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.|+....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997654
No 117
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=125.01 Aligned_cols=81 Identities=11% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCceEEecCCCCCCCHHHHH----HHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 165 PDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~----~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
..++|||+|||.++++++|+ ++|++ ||.|.+|.++.+..+ +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 45799999999999999999 99997 999999999988644 88999999999999999999999999999999
Q ss_pred EccCCcccc
Q 020847 241 IGPAATKKA 249 (320)
Q Consensus 241 v~~a~~~~~ 249 (320)
|.++++...
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999987643
No 118
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=126.80 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=79.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
++|||+|||.++|+++|+++|+.||.|.++.+..+ ++|||||+|.+.++|.+|++.|+|..+ .++.+++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 47999999999999999999999999999999887 689999999999999999999999999 45567777776
Q ss_pred CCCCCCCC-----CCCCCceEEecCCC
Q 020847 154 YGAGERRQ-----DDGPDFTIFVGDLA 175 (320)
Q Consensus 154 ~~~~~~~~-----~~~~~~~l~v~nl~ 175 (320)
........ ......+||||||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 54432221 22336789999997
No 119
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=6.6e-19 Score=132.04 Aligned_cols=88 Identities=22% Similarity=0.377 Sum_probs=81.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3445679999999999999999999997 999999999999889999999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|+.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876544
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=2e-18 Score=127.84 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=75.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.......++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|||..+ .++.
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 111 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKR 111 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEE
Confidence 34456779999999999999999999999999999999999988899999999999999999999999999998 4556
Q ss_pred eEeecc
Q 020847 147 FRLNWA 152 (320)
Q Consensus 147 ~~~~~~ 152 (320)
+++.|+
T Consensus 112 l~V~~a 117 (118)
T 2khc_A 112 LKVQLK 117 (118)
T ss_dssp CCEEEC
T ss_pred EEEEec
Confidence 666654
No 121
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-18 Score=122.46 Aligned_cols=85 Identities=14% Similarity=0.280 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++ +++..+ .++.+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999997 999999 566777
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 77776543
No 122
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=124.29 Aligned_cols=87 Identities=21% Similarity=0.415 Sum_probs=78.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPI 87 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.++....
T Consensus 88 ~v~~a~~~~ 96 (105)
T 1x5u_A 88 RVNKASAHN 96 (105)
T ss_dssp EEEETTTTS
T ss_pred EEEECCCCC
Confidence 888876543
No 123
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=3e-19 Score=126.10 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC--eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC--CCCCc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE--FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM--PSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~--v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~--~~~~~ 145 (320)
...-.+|||+|||+++|+++|+++|+.||. +.+|++++|+.+|.++|||||+|.+.++|.+|++.|||... ...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 456688999999999999999999999995 67999999999999999999999999999999999999752 12577
Q ss_pred ceEeeccCC
Q 020847 146 NFRLNWATY 154 (320)
Q Consensus 146 ~~~~~~~~~ 154 (320)
.+.+.|+..
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 888888763
No 124
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=128.81 Aligned_cols=85 Identities=18% Similarity=0.423 Sum_probs=77.9
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 160 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
.......++|||+|||.++++++|+++|++ ||.|..+.+..+. +.++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556789999999999999999999998 9999999999885 4589999999999999999999999999999999
Q ss_pred EEccCCcc
Q 020847 240 RIGPAATK 247 (320)
Q Consensus 240 ~v~~a~~~ 247 (320)
+|.+++++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999876
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=125.21 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=73.5
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--ccCCcc
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRP 238 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~ 238 (320)
....++++|||+|||+++++++|+++|++ ||.|.+|.++++ ||||||+|.+.++|.+|++.|++. .+.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 44566789999999999999999999998 999999988753 789999999999999999998764 599999
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|.|.|++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (104)
T 1wex_A 83 AFFNYSTSKRIT 94 (104)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCcccc
Confidence 999999876543
No 126
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=124.20 Aligned_cols=87 Identities=26% Similarity=0.343 Sum_probs=79.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..|.++.++.+|.++|||||+|.+.++|.+|++ ++..++|+.|.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 34456789999999999999999999997 9999999999998889999999999999999999998 57899999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|+.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999987544
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=124.34 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=74.5
Q ss_pred CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc--CcccCCc
Q 020847 160 RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN--GVLCSTR 237 (320)
Q Consensus 160 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~~~g~ 237 (320)
+....++++|||+|||+++++++|+++|++ ||.|.+|.++++ ||||||+|.+.++|.+|++.|+ +..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 344567789999999999999999999998 999999988764 8899999999999999999874 6789999
Q ss_pred ceEEccCCccccc
Q 020847 238 PMRIGPAATKKAA 250 (320)
Q Consensus 238 ~i~v~~a~~~~~~ 250 (320)
+|.|.|++.+...
T Consensus 82 ~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 82 PIYIQYSNHKELK 94 (101)
T ss_dssp ECEEEECSCSSCC
T ss_pred EEEEEEcCcccCc
Confidence 9999999977544
No 128
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=3.4e-18 Score=125.94 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=78.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|+++.+..++.++|||||+|.+.++|.+|++.|||..+ .++.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 97 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRL 97 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999998 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.|+....
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 888877543
No 129
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=123.91 Aligned_cols=86 Identities=21% Similarity=0.412 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|||..+ .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 455678999999999999999999999999999999999988999999999999999999999999999999 556677
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 77766443
No 130
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-19 Score=126.98 Aligned_cols=82 Identities=10% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCCCceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCc--ccCCcc
Q 020847 162 DDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGV--LCSTRP 238 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~~~g~~ 238 (320)
...++++|||+|||+ +++++||+++|++ ||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .+.|++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 345678999999999 9999999999998 999999999765 589999999999999999999864 599999
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|.|.|+......
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 1x4d_A 84 VRVHLSQKYKRI 95 (102)
T ss_dssp CEEEEECCCTTS
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 131
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.78 E-value=3.8e-18 Score=125.72 Aligned_cols=88 Identities=27% Similarity=0.514 Sum_probs=79.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 87 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQI 87 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3455779999999999999999999999999999999999988999999999999999999999999999998 56778
Q ss_pred EeeccCCCCC
Q 020847 148 RLNWATYGAG 157 (320)
Q Consensus 148 ~~~~~~~~~~ 157 (320)
++.|+.....
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 8888775543
No 132
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=128.40 Aligned_cols=85 Identities=16% Similarity=0.255 Sum_probs=77.6
Q ss_pred CCCCceEEecCCCCCCCHHHHH---HHHHhhCCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhcCcccCC
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQ---ETFRAVYSSVKGAKVVTDRTTG---RSKGYGFVRFGDESEQLRSMTEMNGVLCST 236 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~---~~f~~~~g~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 236 (320)
....++|||+|||+++++++|+ ++|++ ||.|.++.+.++..++ .++|||||+|.+.++|.+|++.|||..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3456799999999999999999 99998 9999999999886543 566999999999999999999999999999
Q ss_pred cceEEccCCccc
Q 020847 237 RPMRIGPAATKK 248 (320)
Q Consensus 237 ~~i~v~~a~~~~ 248 (320)
+.|+|.|+.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999999875
No 133
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.5e-18 Score=135.03 Aligned_cols=87 Identities=22% Similarity=0.272 Sum_probs=81.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|..|.|+.+..++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999997 9999999999998889999999999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|+++....
T Consensus 115 ~a~~~~~~ 122 (156)
T 1h2v_Z 115 WDAGFKEG 122 (156)
T ss_dssp EESCCCTT
T ss_pred ECCCCCCc
Confidence 99876543
No 134
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=126.10 Aligned_cols=84 Identities=17% Similarity=0.402 Sum_probs=77.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-------
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC------- 234 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~------- 234 (320)
.....++|||+|||.++++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 3456789999999999999999999997 9999999999997 899999999999999999999999999999
Q ss_pred -CCcceEEccCCcc
Q 020847 235 -STRPMRIGPAATK 247 (320)
Q Consensus 235 -~g~~i~v~~a~~~ 247 (320)
.+++|.|.|++++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999999864
No 135
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=136.60 Aligned_cols=81 Identities=17% Similarity=0.370 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
...++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+|.++|||||+|.+.++|.+|++.|||..+ .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4568999999999999999999999999 999999999999999999999999999999999999999999 566777
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 77664
No 136
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.8e-18 Score=120.71 Aligned_cols=83 Identities=28% Similarity=0.503 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 3568999999999999999999999999999999999988899999999999999999999999999999 56777777
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++...
T Consensus 81 ~a~~~ 85 (95)
T 2dnz_A 81 HVTER 85 (95)
T ss_dssp ESSCC
T ss_pred Ecccc
Confidence 77644
No 137
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=124.22 Aligned_cols=88 Identities=19% Similarity=0.340 Sum_probs=79.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.......++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|+|..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 86 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLI 86 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999998 5677
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
|++.++....
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 8888876543
No 138
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=128.93 Aligned_cols=83 Identities=27% Similarity=0.532 Sum_probs=75.2
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDR-TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
....++|||+|||.++++++|+++|++ || |.++.++.+. .+|+++|||||+|.+.++|.+|+ .|||..++|+.|+|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999998 99 9999999987 58999999999999999999999 89999999999999
Q ss_pred ccCCccc
Q 020847 242 GPAATKK 248 (320)
Q Consensus 242 ~~a~~~~ 248 (320)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998764
No 139
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=7.2e-19 Score=128.10 Aligned_cols=86 Identities=26% Similarity=0.383 Sum_probs=76.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|.+|.++.+..+|.++|||||+|.+.++|.+|++.+ +..++|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 3445679999999999999999999997 999999999999888999999999999999999999876 59999999999
Q ss_pred ccCCcccc
Q 020847 242 GPAATKKA 249 (320)
Q Consensus 242 ~~a~~~~~ 249 (320)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987754
No 140
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=6.1e-18 Score=122.48 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC-CCcce
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS-TEQNF 147 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~-~~~~~ 147 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.+..++ +|.++|||||+|.+.++|.+|++.|+|..+.+ ..+.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999999999996 78899999999999999999999999999853 22778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 888877554
No 141
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=125.67 Aligned_cols=85 Identities=16% Similarity=0.350 Sum_probs=76.8
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
.....++|||+|||.++++++|+++|++ ||.|..+.+..+ +.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3456789999999999999999999998 999999998654 568999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++++...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999876543
No 142
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.5e-19 Score=127.17 Aligned_cols=82 Identities=29% Similarity=0.497 Sum_probs=73.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAAT 246 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 246 (320)
++|||+|||.++++++|+++|++ ||.|.++.+..+..+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 48999999999999999999998 999999999999888999999999999999 9999999999999999999999987
Q ss_pred cccc
Q 020847 247 KKAA 250 (320)
Q Consensus 247 ~~~~ 250 (320)
....
T Consensus 80 ~~~~ 83 (90)
T 2ki2_A 80 KKSL 83 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 143
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=3.5e-18 Score=123.99 Aligned_cols=89 Identities=15% Similarity=0.348 Sum_probs=79.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCC-CCCCCcc
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTEQN 146 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~-~~~~~~~ 146 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|.. +.+.++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345677999999999999999999999999999999999998899999999999999999999999999987 4556788
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
+.+.++....
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 8888877543
No 144
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.4e-18 Score=120.84 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.++.++.+..++.++|||||+|.+.++|.+|++.|||..+ .++.+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999 5667777
Q ss_pred ecc
Q 020847 150 NWA 152 (320)
Q Consensus 150 ~~~ 152 (320)
.|+
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 665
No 145
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=123.69 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=76.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 99 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPMK 99 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 566777
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 777653
No 146
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=126.36 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc-CCCCCCCCcceEee
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN-GTQMPSTEQNFRLN 150 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~-g~~~~~~~~~~~~~ 150 (320)
+++|||+|||.++|+++|+++|+.|| .|.+|++++|+.+|.++|||||+|.+.++|.+|++.++ +..+ .++.+++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 79999999999999999999999999999999998774 4456 56788888
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++...
T Consensus 79 ~a~~~ 83 (91)
T 2lxi_A 79 YSDPK 83 (91)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 87654
No 147
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=122.44 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--------GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
...++|||+|||.++++++|+++|+.||.|.+ +++..++.+|.++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~-- 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF-- 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe--
Confidence 35689999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCcceEeecc
Q 020847 143 TEQNFRLNWA 152 (320)
Q Consensus 143 ~~~~~~~~~~ 152 (320)
.++.+++.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 4566776664
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-19 Score=120.99 Aligned_cols=76 Identities=28% Similarity=0.423 Sum_probs=72.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
++|||+|||.++++++|+++|++ ||.|..+.+..++.+|.++|||||+|.+.++|.+|++.++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999998 9999999999998889999999999999999999999999 9999999999987
No 149
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=9.6e-19 Score=128.95 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=89.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.+|.+..+ +.++|||||+|.+.++|.+|+..|||..+ .++.+.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLVVL 80 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 45689999999999999999999999999999999875 44699999999999999999999999999 56677777
Q ss_pred ccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCC
Q 020847 151 WATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSS 193 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~ 193 (320)
++...... ++++...++++|.++|++ ||.
T Consensus 81 ~a~~~~~~-------------~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 81 YYNANRAF-------------QKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp ECCHHHHT-------------TTSCHHHHHHHHHHHHHH-HCC
T ss_pred EecCChhh-------------hhhhHhHhHHHHHHHHHH-hCC
Confidence 76532211 578888999999999997 875
No 150
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=122.00 Aligned_cols=83 Identities=19% Similarity=0.346 Sum_probs=75.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 88 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVI 88 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 3345678999999999999999999999999999999999988899999999999999999999999999998 56777
Q ss_pred Eeecc
Q 020847 148 RLNWA 152 (320)
Q Consensus 148 ~~~~~ 152 (320)
++.|+
T Consensus 89 ~v~~a 93 (94)
T 2e5h_A 89 KASIA 93 (94)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77765
No 151
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=122.21 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++.|+|..+ .++.+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999 5677888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 83 ~~a~~~~ 89 (99)
T 1whw_A 83 LPSTIKK 89 (99)
T ss_dssp EECCCCS
T ss_pred EEcCCCc
Confidence 8876543
No 152
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=129.42 Aligned_cols=86 Identities=13% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCCCCceEEecCCCCCCCHHHHH----HHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~----~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
...++++|||+||++.+++++|+ ++|++ ||.|.+|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 34557799999999999999876 69997 99999987743 578899999999999999999999999999999
Q ss_pred ceEEccCCcccccc
Q 020847 238 PMRIGPAATKKAAT 251 (320)
Q Consensus 238 ~i~v~~a~~~~~~~ 251 (320)
.|+|.|++.+....
T Consensus 101 ~l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 101 PLVITFSETPQSQV 114 (127)
T ss_dssp CCEEEECCCCCHHH
T ss_pred EEEEEEccCcchhc
Confidence 99999999875543
No 153
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=122.25 Aligned_cols=84 Identities=19% Similarity=0.317 Sum_probs=77.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.++.+..++.++.++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3455678999999999999999999999999999999999988899999999999999999999999999998 56778
Q ss_pred EeeccC
Q 020847 148 RLNWAT 153 (320)
Q Consensus 148 ~~~~~~ 153 (320)
.+.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 888765
No 154
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=123.70 Aligned_cols=85 Identities=20% Similarity=0.403 Sum_probs=77.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+..++.++|||||+|.+.++|.+|++.|||..+ .++.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999988899999999999999999999999999999 566777
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 8777654
No 155
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7.1e-18 Score=122.58 Aligned_cols=87 Identities=16% Similarity=0.411 Sum_probs=77.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEec-CCCCCccCeEEEEEcCHHHHHHHHHHh-cCCCCCCCCc
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRN-KQTNFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQ 145 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~-~~~~~~~g~afv~f~~~~~A~~a~~~l-~g~~~~~~~~ 145 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.+ ..++.++|||||+|.+.++|.+|+..| +|..+ .++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCC
Confidence 34556789999999999999999999999999999999998 778999999999999999999999999 89999 466
Q ss_pred ceEeeccCCCC
Q 020847 146 NFRLNWATYGA 156 (320)
Q Consensus 146 ~~~~~~~~~~~ 156 (320)
.+.+.|+....
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 77888776543
No 156
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=120.80 Aligned_cols=82 Identities=30% Similarity=0.571 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 56777777
Q ss_pred ccCC
Q 020847 151 WATY 154 (320)
Q Consensus 151 ~~~~ 154 (320)
|+..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 7653
No 157
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=1.8e-18 Score=129.21 Aligned_cols=83 Identities=19% Similarity=0.438 Sum_probs=78.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|++ ||.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3579999999999999999999998 999999999999889999999999999999999999 89999999999999999
Q ss_pred Ccccc
Q 020847 245 ATKKA 249 (320)
Q Consensus 245 ~~~~~ 249 (320)
+....
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86543
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-19 Score=130.19 Aligned_cols=84 Identities=24% Similarity=0.382 Sum_probs=78.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|+. ||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..++|+.|.|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3579999999999999999999997 999999999999888999999999999999999999 99999999999999999
Q ss_pred Cccccc
Q 020847 245 ATKKAA 250 (320)
Q Consensus 245 ~~~~~~ 250 (320)
+++...
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876543
No 159
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=131.89 Aligned_cols=83 Identities=24% Similarity=0.430 Sum_probs=77.6
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|++ ||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999998 99999999999988999999999999999999999999999999999999
Q ss_pred EccC
Q 020847 241 IGPA 244 (320)
Q Consensus 241 v~~a 244 (320)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 160
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=123.26 Aligned_cols=87 Identities=46% Similarity=0.837 Sum_probs=77.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCee-EEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc-
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV-SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN- 146 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~-~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~- 146 (320)
.....++|||+|||.++++++|+++|+.||.|. +++++.++.++.++|||||+|.+.++|.+|++.|||..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 999999988999999999999999999999999999999655422
Q ss_pred -eEeeccCCC
Q 020847 147 -FRLNWATYG 155 (320)
Q Consensus 147 -~~~~~~~~~ 155 (320)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 778887644
No 161
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=127.76 Aligned_cols=84 Identities=21% Similarity=0.372 Sum_probs=79.0
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|+. ||.|..|.|+.++.+|.++|||||+|.+.++|.+|++. ++..++|+.|+|.++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3579999999999999999999997 99999999999988899999999999999999999987 999999999999999
Q ss_pred Cccccc
Q 020847 245 ATKKAA 250 (320)
Q Consensus 245 ~~~~~~ 250 (320)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987544
No 162
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=125.70 Aligned_cols=83 Identities=17% Similarity=0.341 Sum_probs=75.5
Q ss_pred CCCCceEEecCCCCCC------CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC
Q 020847 163 DGPDFTIFVGDLAADV------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST 236 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~------t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 236 (320)
....++|||+|||..+ ++++|+++|++ ||.|.++.+.+ .+|.++|||||+|.+.++|.+|++.|||..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3446799999999999 78999999998 99999999883 578999999999999999999999999999999
Q ss_pred c-ceEEccCCccc
Q 020847 237 R-PMRIGPAATKK 248 (320)
Q Consensus 237 ~-~i~v~~a~~~~ 248 (320)
+ .|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999997653
No 163
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=123.01 Aligned_cols=86 Identities=33% Similarity=0.478 Sum_probs=77.7
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
....+.++|||+|||.++++++|+++|+. |+ .+.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44566789999999999999999999996 73 678888888899999999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987544
No 164
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=5.3e-18 Score=127.18 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=77.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3455678999999999999999999999999999999999988999999999999999999999999999999 56777
Q ss_pred EeeccCC
Q 020847 148 RLNWATY 154 (320)
Q Consensus 148 ~~~~~~~ 154 (320)
++.|+..
T Consensus 119 ~V~~a~~ 125 (129)
T 2kxn_B 119 RVDFSIT 125 (129)
T ss_dssp EESCCSS
T ss_pred EEEEecC
Confidence 8877764
No 165
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=3.5e-18 Score=118.18 Aligned_cols=80 Identities=29% Similarity=0.615 Sum_probs=74.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
+.+|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 36899999999999999999999999999999999988999999999999999999999999999999 5677888877
Q ss_pred CC
Q 020847 153 TY 154 (320)
Q Consensus 153 ~~ 154 (320)
..
T Consensus 79 ~~ 80 (83)
T 3md1_A 79 AK 80 (83)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 166
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=124.15 Aligned_cols=86 Identities=19% Similarity=0.320 Sum_probs=78.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.+.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999999 677888
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 88877554
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.1e-18 Score=131.49 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=76.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
....++|||+|||+++|+++|+++|++ ||. |.+|.|++|+. |+++|||||+|.+.++|.+|++ |||..++||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 345679999999999999999999998 999 89999999976 9999999999999999999998 99999999999
Q ss_pred EEccCCccc
Q 020847 240 RIGPAATKK 248 (320)
Q Consensus 240 ~v~~a~~~~ 248 (320)
+|.++..+.
T Consensus 118 ~V~~a~~~e 126 (136)
T 2hgl_A 118 EVFKSHRTE 126 (136)
T ss_dssp EEEECCHHH
T ss_pred EEEECChHH
Confidence 999987553
No 168
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-18 Score=123.04 Aligned_cols=86 Identities=19% Similarity=0.352 Sum_probs=78.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc------CCCCCC
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN------GTQMPS 142 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~------g~~~~~ 142 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.++ |..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 34567899999999999999999999999999999999998899999999999999999999999999 8888
Q ss_pred CCcceEeeccCCCC
Q 020847 143 TEQNFRLNWATYGA 156 (320)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (320)
.++.+.+.++....
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 66788888876543
No 169
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=124.32 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=76.4
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG-AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
.....++|||+|||+++++++|+++|++ ||.|.. |.|+.+ .+|+++|||||+|.+.++|.+|++. ++..++|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 3445679999999999999999999998 999987 888888 6899999999999999999999987 99999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 170
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.9e-19 Score=128.52 Aligned_cols=86 Identities=12% Similarity=0.175 Sum_probs=78.7
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSV-KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...+.++|||+|||+++++++|+++|+. ||.| ..|.|+.+. +|+++|||||+|.+.++|.+|++. |+..++|+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 3445689999999999999999999998 9999 899999997 899999999999999999999976 99999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.++..+...
T Consensus 88 v~~a~~~~~~ 97 (114)
T 2cpy_A 88 VHVVTLEDMR 97 (114)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999876543
No 171
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=120.38 Aligned_cols=85 Identities=20% Similarity=0.368 Sum_probs=76.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++|+++|+++|+.||.|.+|.++.+ ++.++|||||+|.+.++|.+|+..|+|..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcEE
Confidence 34557889999999999999999999999999999999998 788999999999999999999999999999 56777
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2d9p_A 86 YVALAQRKE 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEEecccc
Confidence 777776543
No 172
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=1.9e-19 Score=162.04 Aligned_cols=86 Identities=20% Similarity=0.405 Sum_probs=80.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||..+|+++|.++|++ ||.|+.|.|+.+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345679999999999999999999997 9999999999998899999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
|+.....
T Consensus 178 ~a~~~~~ 184 (437)
T 3pgw_S 178 VERGRTV 184 (437)
T ss_pred EeCCCCC
Confidence 9987643
No 173
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=1.1e-18 Score=122.58 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
.+|||+|||.++|+++|+++|+.|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+ .++.+++.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999999 556677776
Q ss_pred cCCC
Q 020847 152 ATYG 155 (320)
Q Consensus 152 ~~~~ 155 (320)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 6543
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.1e-18 Score=118.51 Aligned_cols=79 Identities=19% Similarity=0.406 Sum_probs=73.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 345679999999999999999999998 9999999987 6799999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|++++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 175
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=123.80 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||++++++||+++|++ ||. .+|.|++++ +|+++|||||+|.+.++|.+|| .+|+..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSP-LNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCS-CCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-cCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 345679999999999999999999998 994 599999997 8999999999999999999999 579999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887654
No 176
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=128.66 Aligned_cols=87 Identities=22% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..++++|||+|||.++++++|+++|++ ||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 346789999999999999999999998 9999544333332378899999999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987654
No 177
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.1e-18 Score=120.42 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.++.+..+. +|.++|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999999997 889999999999999999999999999998 5677888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 887643
No 178
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=122.67 Aligned_cols=83 Identities=19% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.+..+..+|.++|||||+|.+.++|.+|+..|+|..+ .++.+.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 44678999999999999999999999999999999999998999999999999999999999999999999 4567777
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
.++..
T Consensus 98 ~~a~~ 102 (106)
T 1p27_B 98 DWCFV 102 (106)
T ss_dssp EESEE
T ss_pred EeecC
Confidence 77653
No 179
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=120.03 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 45555555
Q ss_pred cc
Q 020847 151 WA 152 (320)
Q Consensus 151 ~~ 152 (320)
|+
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 180
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=2.2e-18 Score=127.38 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=76.1
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...++|||+|||+++++++|+++|+. ||. |..|.|+++.. |+++|||||+|.+.++|.+|++ |||..++|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 45679999999999999999999997 999 89999999975 9999999999999999999998 999999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.++..+.
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99987654
No 181
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-19 Score=130.71 Aligned_cols=86 Identities=16% Similarity=0.340 Sum_probs=78.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||+++++++|+++|+. ||.|..+.++.+..+|+++|||||+|.+.++|.+||+ |||..++|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 445689999999999999999999997 9999987677776799999999999999999999998 99999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
++..+...
T Consensus 100 ~a~~~~~~ 107 (124)
T 1wel_A 100 PITKKGML 107 (124)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99876543
No 182
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=120.14 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=72.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC--CcceE
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS--TRPMR 240 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~i~ 240 (320)
..+.++|||+|||.++++++|+++|++ ||.|.++.+.++ +|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 345679999999999999999999998 999999988653 789999999999999999999999999 99999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|.|++++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998864
No 183
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.9e-18 Score=123.88 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 71 DGIRSLWIGDLQP------WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 71 ~~~~~v~v~nlp~------~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
...++|||+|||. ++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|||..+.+ .
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-~ 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL-K 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS-S
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC-C
Confidence 3468999999999 99999999999999999999999999899999999999999999999999999999953 2
Q ss_pred cceEeeccC
Q 020847 145 QNFRLNWAT 153 (320)
Q Consensus 145 ~~~~~~~~~ 153 (320)
+.+++.++.
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 677777654
No 184
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.1e-18 Score=122.50 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|++ ||.|.++.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4579999999999999999999998 9999999987 34899999999999999999999999999999999999
Q ss_pred Ccc
Q 020847 245 ATK 247 (320)
Q Consensus 245 ~~~ 247 (320)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 185
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=121.66 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.|..+.+.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 3456789999999999999999999998 999999998754 789999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 186
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=120.07 Aligned_cols=73 Identities=15% Similarity=0.357 Sum_probs=67.7
Q ss_pred ceEEecCCCCCC------CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc-ce
Q 020847 167 FTIFVGDLAADV------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR-PM 239 (320)
Q Consensus 167 ~~l~v~nl~~~~------t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~i 239 (320)
++|||+|||..+ ++++|+++|++ ||.|.++.+.. .+|.++|||||+|.+.++|.+|++.|||..++|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 589999999999 77999999998 99999999873 5789999999999999999999999999999999 88
Q ss_pred EEc
Q 020847 240 RIG 242 (320)
Q Consensus 240 ~v~ 242 (320)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 874
No 187
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=117.85 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=71.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcceE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~ 240 (320)
.....++|||+|||.++++++|+++|++ ||.|..+.+.++ +|||||+|.+.++|.+|++.| +|..++|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 3456789999999999999999999998 999999999864 789999999999999999999 99999999999
Q ss_pred EccCC
Q 020847 241 IGPAA 245 (320)
Q Consensus 241 v~~a~ 245 (320)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 188
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=125.24 Aligned_cols=80 Identities=20% Similarity=0.431 Sum_probs=73.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
...+|||+|||++++++||+++|+. | .|.+|.|+.|+ .|+++|||||+|.+.++|.+|+ .+|+..++||.|.|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3469999999999999999999998 9 89999999996 4999999999999999999999 79999999999999888
Q ss_pred Cccc
Q 020847 245 ATKK 248 (320)
Q Consensus 245 ~~~~ 248 (320)
..+.
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 7653
No 189
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=122.86 Aligned_cols=83 Identities=25% Similarity=0.451 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|++|++.|+|..+ .++.+.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999999 5566777
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 776644
No 190
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=127.84 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeE--EEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCC----CCCC
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT----QMPS 142 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~----~~~~ 142 (320)
.....++|||+|||+++|+++|+++|+.||.|.. |+|++|+.+|.++|||||+|.+. +|.+|+..|+|. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999976 99999988999999999999999 999999999999 77
Q ss_pred CCcceEeeccCCC
Q 020847 143 TEQNFRLNWATYG 155 (320)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (320)
.++.|++.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 5566666666543
No 191
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=121.34 Aligned_cols=84 Identities=26% Similarity=0.546 Sum_probs=76.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
...++|||+|||.++++++|+++|+.||.|.++ +++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.+.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 356899999999999999999999999999999 9999988999999999999999999999999999999 5677888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 8876543
No 192
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=4.6e-18 Score=120.98 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=75.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
.++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~a 79 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGYS 79 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEEc
Confidence 57899999999999999999999999999999999988899999999999999999999999999999 5577888887
Q ss_pred CCC
Q 020847 153 TYG 155 (320)
Q Consensus 153 ~~~ 155 (320)
...
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 644
No 193
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=124.69 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC--cccCCcc
Q 020847 162 DDGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG--VLCSTRP 238 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~~~g~~ 238 (320)
...++++|||+|||++ +++++|+++|++ ||.|.+|.|++ +||||||+|.+.++|.+|++.|++ ..+.|+.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 3556789999999998 999999999998 99999999874 389999999999999999998865 5699999
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|.|.|+..+...
T Consensus 94 l~V~~a~~~~~~ 105 (112)
T 1x4f_A 94 VKVDLSEKYKKL 105 (112)
T ss_dssp CEEEEECSCSSS
T ss_pred EEEEECcccccc
Confidence 999999876544
No 194
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=122.32 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=75.2
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|||.++++++|+++|++ ||.| .++.+ .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 4456789999999999999999999998 9977 55566 57899999999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 195
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.3e-18 Score=142.03 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYS--SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..++|||+||++++|+++|+++|++ || .|++|.|++|+.+|+++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4569999999999999999999997 99 99999999999899999999999999999999999999999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
++++..
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998654
No 196
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=118.98 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=72.3
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++++++|+++|++ ||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344679999999999999999999998 99997 666654 578999999999999999999999999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 197
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.6e-19 Score=127.06 Aligned_cols=83 Identities=16% Similarity=0.365 Sum_probs=75.5
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...++|||+|||.++++++|+++|++ ||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 35679999999999999999999998 999988 566666678999999999999999999998 999999999999999
Q ss_pred CCcccc
Q 020847 244 AATKKA 249 (320)
Q Consensus 244 a~~~~~ 249 (320)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 198
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=119.96 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC--CCCCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG--TQMPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~~~~~~~ 147 (320)
+...++|||+|||+++|+++|+++|+.||.|.+|+++++ ||||||+|.+.++|..|++.+++ ..+ .++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 345689999999999999999999999999999999875 79999999999999999998875 455 67888
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.|+....
T Consensus 85 ~V~~A~~~~ 93 (105)
T 1sjq_A 85 YIQFSNHKE 93 (105)
T ss_dssp CBCCCSSSS
T ss_pred EEEEcCCCC
Confidence 888887553
No 199
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=120.65 Aligned_cols=84 Identities=20% Similarity=0.423 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCC---CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQ---TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.+.++|||+|||.++++++|+++|+.||.|.+|.+..+.. ++.++|||||+|.+.++|.+|+..|+|..+ .++.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4568999999999999999999999999999999999876 558899999999999999999999999998 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 81 ~V~~a~~~~ 89 (98)
T 2cpf_A 81 EVRISERAT 89 (98)
T ss_dssp EEECSSCSS
T ss_pred EEEEccCCC
Confidence 888876544
No 200
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=119.95 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCC-CCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT-NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||.++++++|+++|+.|| |.+|.++.+..+ |.++|||||+|.+.++|.+|+ .|+|..+ .++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 87 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRIR 87 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEECE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEEE
Confidence 34568999999999999999999999999 999999999877 899999999999999999999 9999998 567778
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 88776543
No 201
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=7.1e-19 Score=132.92 Aligned_cols=124 Identities=13% Similarity=0.102 Sum_probs=74.8
Q ss_pred CeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCCCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCee
Q 020847 116 GYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVK 195 (320)
Q Consensus 116 g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~ 195 (320)
++|+.+|.-++.+..++.....+. . .. ...- ..............++|||+|||+++|++||+++|++ || |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-g-g~-~~g~---~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~-~G-i~ 73 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-G-GQ-QMGR---GSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSP-LN-PV 73 (139)
T ss_dssp -------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCS-CC-CS
T ss_pred CcccccccCccccchhcccchhcc-C-CC-CCCC---CCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cC-Ce
Confidence 567777777766666664433221 1 11 0000 0001111223345679999999999999999999998 99 77
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccc
Q 020847 196 GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 196 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
+|.|++|+. |+++|||||+|.+.++|.+|| .+|+..++|+.|+|.++.....
T Consensus 74 ~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 74 RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 999999965 999999999999999999999 8899999999999999887654
No 202
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=122.57 Aligned_cols=86 Identities=13% Similarity=0.241 Sum_probs=77.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFV--------SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
.....++|||+|||.++|+++|+++|+.||.|. .|+++.++.+|.++|||||+|.+.++|.+|++.|+|..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345679999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCCCcceEeeccCCCC
Q 020847 141 PSTEQNFRLNWATYGA 156 (320)
Q Consensus 141 ~~~~~~~~~~~~~~~~ 156 (320)
.++.|++.++....
T Consensus 91 --~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 --QGSKLKVSLARKKP 104 (113)
T ss_dssp --TTEECEEECSSCCC
T ss_pred --CCCEEEEEECCCCC
Confidence 56778888877544
No 203
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=119.49 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=75.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.|| |.+|.++.+..++.++|||||+|.+.++|.+|+ .|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEEE
Confidence 345679999999999999999999999997 999999999889999999999999999999999 9999999 567788
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 88776543
No 204
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=6.5e-18 Score=120.01 Aligned_cols=82 Identities=13% Similarity=0.391 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+.. |.++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 455679999999999999999999999999999999999964 88999999999999999999999999998 567777
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 77765
No 205
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=120.26 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.+|.++.+.. |.++|||||+|.+.++|.+|+. ++|..+.| +.+.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g--r~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE--TDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT--TTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC--EEEEE
Confidence 44568999999999999999999999999999999999976 9999999999999999999997 89999954 55555
Q ss_pred ecc
Q 020847 150 NWA 152 (320)
Q Consensus 150 ~~~ 152 (320)
.|+
T Consensus 84 ~~~ 86 (103)
T 1s79_A 84 LFK 86 (103)
T ss_dssp EEH
T ss_pred EEc
Confidence 554
No 206
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.3e-18 Score=117.85 Aligned_cols=75 Identities=24% Similarity=0.404 Sum_probs=71.2
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
+|||+|||.++++++|+++|++ ||.|.++.+..++.+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999998 9999999999998889999999999999999999997 4999999999999875
No 207
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-17 Score=117.83 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=75.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.......++|||+|||.++++++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|+..|+|..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34456779999999999999999999999999999999998853 3899999999999999999999999999 5677
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
|.+.++....
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cq3_A 85 IEVNNATARV 94 (103)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEcccCC
Confidence 8888876554
No 208
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=122.52 Aligned_cols=87 Identities=25% Similarity=0.403 Sum_probs=77.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 66 PDASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 66 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
........++|||+|||.++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.+++ .+ .++
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~ 86 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGR 86 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCE
Confidence 334456789999999999999999999999999999999999988999999999999999999999999998 66 567
Q ss_pred ceEeeccCCC
Q 020847 146 NFRLNWATYG 155 (320)
Q Consensus 146 ~~~~~~~~~~ 155 (320)
.|.+.++...
T Consensus 87 ~l~V~~a~~~ 96 (116)
T 2cqd_A 87 KANVNLAYLG 96 (116)
T ss_dssp ECEEEESTTT
T ss_pred EEEEEEcccC
Confidence 7888887643
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=118.94 Aligned_cols=85 Identities=28% Similarity=0.531 Sum_probs=75.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.+..+ ++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeE
Confidence 34567799999999999999999999999999999999998533 689999999999999999999999998 56788
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.|+....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 888887544
No 210
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=7.8e-18 Score=122.98 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|+..|+|..+ .++.+.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 100 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 100 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999 5677888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.|+...
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 776543
No 211
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=3.9e-18 Score=123.75 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYS-SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGP 243 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 243 (320)
...+|||+|||+++++++|+++|++ || .|..+.+.. +.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3569999999999999999999998 99 899998753 34799999999999999999999999999999999999
Q ss_pred CCccc
Q 020847 244 AATKK 248 (320)
Q Consensus 244 a~~~~ 248 (320)
++...
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97653
No 212
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=119.19 Aligned_cols=83 Identities=29% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCC-CCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGH-TGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQ-MPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~-~~~~~~~~ 147 (320)
....++|||+|||.++|+++|+++|+. ||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|+|.. + .++.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~l 82 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKPV 82 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEeE
Confidence 345689999999999999999999999 9999999999997 89999999999999999999999999999 8 45667
Q ss_pred EeeccCCC
Q 020847 148 RLNWATYG 155 (320)
Q Consensus 148 ~~~~~~~~ 155 (320)
.+.++...
T Consensus 83 ~v~~a~~~ 90 (104)
T 2dhg_A 83 RLSVAIPK 90 (104)
T ss_dssp CCCBCCCC
T ss_pred EEEEccCC
Confidence 77776544
No 213
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.5e-18 Score=122.28 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=74.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++++++|+++|++ ||.|..|.+..+ +|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345679999999999999999999997 999999999875 7899999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99987544
No 214
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=1e-17 Score=121.68 Aligned_cols=80 Identities=20% Similarity=0.446 Sum_probs=72.5
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++.|||..++|+.|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34556789999999999999999999998 9999999987 78999999999999999999999999999999
Q ss_pred EccCCcccc
Q 020847 241 IGPAATKKA 249 (320)
Q Consensus 241 v~~a~~~~~ 249 (320)
|.|++++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999987654
No 215
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=125.89 Aligned_cols=83 Identities=13% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSS---VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
....++|||+|||+++++++|+++|+. ||. |..|.|+.+.. |+++|||||+|.+.++|.+|++ +||..++|+.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 345679999999999999999999997 998 89999999976 9999999999999999999998 99999999999
Q ss_pred EEccCCccc
Q 020847 240 RIGPAATKK 248 (320)
Q Consensus 240 ~v~~a~~~~ 248 (320)
+|.++.++.
T Consensus 85 ~V~~a~~~~ 93 (107)
T 2lmi_A 85 EVYEINNED 93 (107)
T ss_dssp CCEECCHHH
T ss_pred EEEECCHHH
Confidence 999998654
No 216
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=120.95 Aligned_cols=83 Identities=11% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999888899888999999999999999999999999999998 556777
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 89 V~~a~ 93 (98)
T 2cqp_A 89 LVLGS 93 (98)
T ss_dssp EEESS
T ss_pred EEEcC
Confidence 77765
No 217
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-17 Score=117.23 Aligned_cols=81 Identities=11% Similarity=0.066 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||+++++++|+++|+.||.|.++.++++ ||||||+|.+.++|.+|++.|++..+...++.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999998763 89999999999999999999987663337788888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 8887544
No 218
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=117.21 Aligned_cols=81 Identities=16% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 161 QDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 161 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
......++|||+|||.++++++|+++|++ ||.|..+.+. ++||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456789999999999999999999998 9999999986 34999999999999999999999999999999
Q ss_pred EccCCccccc
Q 020847 241 IGPAATKKAA 250 (320)
Q Consensus 241 v~~a~~~~~~ 250 (320)
|.|++++...
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999877543
No 219
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=3.2e-18 Score=122.11 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCCCceEEecCCCCCCCHHHHH----HHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQ----ETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 238 (320)
..++++|||+|||.++++++|+ ++|++ ||.|..+.+.. +|.++|||||+|.+.++|.+|++.|||..++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3467799999999999999999 99997 99999998863 4678999999999999999999999999999999
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|+|.|++++...
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999987544
No 220
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.5e-17 Score=116.18 Aligned_cols=82 Identities=18% Similarity=0.320 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.++.+..+ +|.++|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 446789999999999999999999999999999999884 778899999999999999999999999999 4566777
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 776543
No 221
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=9.9e-18 Score=116.99 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=70.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45677899999999999999999999999999999999998899999999999999999999994 577766 556666
Q ss_pred eec
Q 020847 149 LNW 151 (320)
Q Consensus 149 ~~~ 151 (320)
+.+
T Consensus 84 v~~ 86 (87)
T 3s7r_A 84 PKK 86 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 222
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=5.9e-18 Score=121.33 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecC-CCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNK-QTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~-~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||.++++++|+++|+.|| |.+|.+..+. .+|.++|||||+|.+.++|.+|+ .|+|..+ .++.++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEEE
Confidence 34668999999999999999999999999 9999999997 58999999999999999999999 9999999 556677
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 766653
No 223
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2e-17 Score=117.74 Aligned_cols=77 Identities=13% Similarity=0.328 Sum_probs=70.7
Q ss_pred CCCCCceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 162 DDGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...++++|||+|||. ++++++|+++|++ ||.|.++.+ ++|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344678999999998 9999999999998 999999988 278999999999999999999999999999999
Q ss_pred EccCCcc
Q 020847 241 IGPAATK 247 (320)
Q Consensus 241 v~~a~~~ 247 (320)
|.|++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999865
No 224
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-16 Score=117.76 Aligned_cols=85 Identities=21% Similarity=0.400 Sum_probs=75.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC------
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS------ 142 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~------ 142 (320)
.....++|||+|||.++++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999997 89999999999999999999999999999854
Q ss_pred CCcceEeeccCC
Q 020847 143 TEQNFRLNWATY 154 (320)
Q Consensus 143 ~~~~~~~~~~~~ 154 (320)
.++++.+.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 345677777653
No 225
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=120.02 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=72.8
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC-----cc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST-----RP 238 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-----~~ 238 (320)
...++|||+|||.++++++|+++|++ ||.|..+.|+.+ |||||+|.+.++|.+|++.|||..+.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 34679999999999999999999997 999999999865 799999999999999999999999999 99
Q ss_pred eEEccCCccccc
Q 020847 239 MRIGPAATKKAA 250 (320)
Q Consensus 239 i~v~~a~~~~~~ 250 (320)
|+|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999986543
No 226
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.6e-17 Score=119.21 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.++ ++.++|||||+|.+.++|.+|++.|+|..+ .++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 34567899999999999999999999999999999999996 688999999999999999999999999999 566777
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 777654
No 227
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.6e-19 Score=132.13 Aligned_cols=86 Identities=27% Similarity=0.372 Sum_probs=80.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKG--------AKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
.+.++|||+|||.++++++|+++|++ ||.|.. +.++.++.++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 45679999999999999999999998 999999 899999888999999999999999999999999999999
Q ss_pred CcceEEccCCccccc
Q 020847 236 TRPMRIGPAATKKAA 250 (320)
Q Consensus 236 g~~i~v~~a~~~~~~ 250 (320)
|+.|+|.+++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887554
No 228
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=117.56 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||+ ++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|..|++.|++......++.|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 44678999999999 9999999999999999999999865 6899999999999999999999865333778888
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 86 V~~a~~~ 92 (102)
T 1x4d_A 86 VHLSQKY 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 8887743
No 229
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.8e-18 Score=123.82 Aligned_cols=82 Identities=12% Similarity=0.291 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|+ .|+|..+ .++.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 97 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPII 97 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999 9999999 566777
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 77764
No 230
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=119.78 Aligned_cols=86 Identities=26% Similarity=0.410 Sum_probs=77.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+.. ++..+ .++.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEE
Confidence 3456789999999999999999999999999999999999988999999999999999999999988 99888 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 888776543
No 231
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=117.98 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||+++|+++|+++|+.||.+ +|+|+.++ +|+++|||||+|.+.++|++|+ .+|+..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEE
Confidence 34566899999999999999999999999955 99999996 8999999999999999999999 6799988 455677
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 7665543
No 232
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=2.3e-17 Score=118.94 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=72.8
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|..|.++ ++||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 345679999999999999999999998 9999999875 5599999999999999999999999999999999
Q ss_pred cCCcccccc
Q 020847 243 PAATKKAAT 251 (320)
Q Consensus 243 ~a~~~~~~~ 251 (320)
|++++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998876543
No 233
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-18 Score=123.00 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|++ ||.|..|.+.. ++|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3569999999999999999999998 99999998763 4789999999999999999999999999999999999
Q ss_pred Cccc
Q 020847 245 ATKK 248 (320)
Q Consensus 245 ~~~~ 248 (320)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7653
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.4e-17 Score=121.28 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=71.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.++.+..+|.++|||||+|.+.++|.+|+..+ +..+ .++.+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l~ 97 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTID 97 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEEE
Confidence 4556789999999999999999999999999999999999888999999999999999999999765 5666 567788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 8777644
No 235
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.72 E-value=2.9e-17 Score=123.04 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.+|.++.+..++.++|||||+|.+.++|.+|++.|||..+ .++.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 96 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 96 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999999999 5566777
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 766543
No 236
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=116.79 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..++++|||+|||+++|+++|+++|+.||.|.++.+++ .||||||+|.+.++|.+|++.+++..+...++.+.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34568999999999999999999999999999999985 389999999999999999999999874336788888
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
.++..
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 88764
No 237
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=9.3e-18 Score=113.66 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=67.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
+|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|++|++ ++|..+ .++.+++.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEe
Confidence 59999999999999999999999999999999998899999999999999999999996 999999 455566654
No 238
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=2e-17 Score=115.93 Aligned_cols=80 Identities=14% Similarity=0.302 Sum_probs=73.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
+.++|||+|||.++++++|+++|+.||.|.++.+..+..++.++|||||+|.+.++|.+|+ .++|..+ .++.+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4589999999999999999999999999999999999889999999999999999999999 9999999 567777777
Q ss_pred cCC
Q 020847 152 ATY 154 (320)
Q Consensus 152 ~~~ 154 (320)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
No 239
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=125.01 Aligned_cols=84 Identities=20% Similarity=0.372 Sum_probs=75.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 67 DASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 67 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.......++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 134 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRT 134 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999999999988 4666
Q ss_pred eEeecc
Q 020847 147 FRLNWA 152 (320)
Q Consensus 147 ~~~~~~ 152 (320)
+++.++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 776653
No 240
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.1e-17 Score=116.23 Aligned_cols=79 Identities=18% Similarity=0.402 Sum_probs=71.5
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhC--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVY--SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~--g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
...+.++|||+|||.++++++|+++|++ | |.|..+.+. +|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3445689999999999999999999998 9 889888763 6799999999999999999999999999999
Q ss_pred EEccCCcccc
Q 020847 240 RIGPAATKKA 249 (320)
Q Consensus 240 ~v~~a~~~~~ 249 (320)
+|.|++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999988754
No 241
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-16 Score=115.91 Aligned_cols=84 Identities=17% Similarity=0.301 Sum_probs=73.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++|+++|+++|+.||.|.+|.+..+ +.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 34556789999999999999999999999999999999654 45799999999999999999999999998 56788
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.++....
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 888877543
No 242
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-16 Score=118.41 Aligned_cols=84 Identities=14% Similarity=0.242 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 45677999999999999999999999999999999999997 899999999999999999999999999998 567788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 8887643
No 243
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-18 Score=125.07 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCe----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSV----KGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...+|||+|||+++|++||+++|++ ||.| .+|.|+.+ .+|+++|||||+|.+.++|.+|++. |+..++||.|+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 4569999999999999999999998 9875 68999998 4899999999999999999999986 99999999999
Q ss_pred EccCCccc
Q 020847 241 IGPAATKK 248 (320)
Q Consensus 241 v~~a~~~~ 248 (320)
|..+..+.
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99887553
No 244
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=115.41 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=72.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++++++|+++|++ ||.|..+.+. ++||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445679999999999999999999998 9999999986 3499999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|+++....
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99877443
No 245
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.5e-17 Score=130.31 Aligned_cols=85 Identities=32% Similarity=0.448 Sum_probs=79.4
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|||.++++++|+++|++ ||.|+.|.|..+. +|.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999998 9999999999997 89999999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
|+.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987643
No 246
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.6e-17 Score=119.58 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=74.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||..+++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 34567999999999999999999999999999999999997 899999999999999999999999999999 556677
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 76653
No 247
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-17 Score=116.48 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS-GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||+++|+++|+++|+.||.|.+ +.++.+ .+|+++|||||+|.+.++|.+|+.. ++..+ .++.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i~ 87 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYIE 87 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEEE
Confidence 356689999999999999999999999999987 888888 7899999999999999999999976 99888 555677
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 88 v~~~~~ 93 (104)
T 1wg5_A 88 IFKSSR 93 (104)
T ss_dssp EEEECT
T ss_pred EEECCH
Confidence 766553
No 248
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=120.91 Aligned_cols=82 Identities=10% Similarity=0.188 Sum_probs=73.6
Q ss_pred ceEEecCC----CCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhcCc
Q 020847 167 FTIFVGDL----AADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGD----ESE----QLRSMT--EMNGV 232 (320)
Q Consensus 167 ~~l~v~nl----~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~A~~--~l~g~ 232 (320)
..|||+|| ++.+++++|+++|++ ||.|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 48999999 999999999999997 9999999999999999999999999996 333 888988 78999
Q ss_pred ccCCcceEEccCCcccc
Q 020847 233 LCSTRPMRIGPAATKKA 249 (320)
Q Consensus 233 ~~~g~~i~v~~a~~~~~ 249 (320)
.++|+.|+|.+-+....
T Consensus 82 ~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSIL 98 (136)
T ss_dssp EETTEEEEEEECCTTHH
T ss_pred eecCcEEEEEECcccHH
Confidence 99999999998776543
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=119.55 Aligned_cols=83 Identities=24% Similarity=0.499 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.|+|..+ .++.+++.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999999 56677777
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 77643
No 250
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=115.94 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCC-ccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNF-SEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~-~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
..++|||+|||.++++++|+++|+.||.|.++.+..+..++. ++|||||+|.+.++|.+|++.|||..+ .++.+.+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 458899999999999999999999999999999999877665 899999999999999999999999999 56667777
Q ss_pred ccCC
Q 020847 151 WATY 154 (320)
Q Consensus 151 ~~~~ 154 (320)
++..
T Consensus 81 ~a~~ 84 (88)
T 4a8x_A 81 AVLA 84 (88)
T ss_dssp EECC
T ss_pred ECCC
Confidence 6643
No 251
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=7.5e-18 Score=119.68 Aligned_cols=81 Identities=11% Similarity=0.165 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 3458999999999999999999999999999899999988999999999999999999999999999999 55667776
Q ss_pred ccC
Q 020847 151 WAT 153 (320)
Q Consensus 151 ~~~ 153 (320)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 252
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.8e-17 Score=127.99 Aligned_cols=109 Identities=18% Similarity=0.231 Sum_probs=88.7
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-cCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCC
Q 020847 205 TGRSKGYGFVRFGDESEQLRSMTEM-NGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLD 283 (320)
Q Consensus 205 ~~~~~g~afV~f~~~~~A~~A~~~l-~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 283 (320)
....+|+++|+|.+.++|.+|++.+ ||..++| .|.+.++..+....... ...............++|||+|||
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-----HHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-----SSCCCCSCSSSSTTSCEEEEESCC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-----ccccccccccCCCCCCEEEEeCCC
Confidence 3567999999999999999999999 9999999 99999987653321110 011111223445677999999999
Q ss_pred CcCCHHHHHHHhccCCCEEEEEecCC-ccEEEEEeec
Q 020847 284 PSVTDDILKTVFGQYGELVHVKIPAG-KRCGFVQFAN 319 (320)
Q Consensus 284 ~~~~~~~L~~~f~~~G~i~~v~i~~~-~~~afV~F~~ 319 (320)
..+++++|+++|+.||.|.+++|.++ +|||||+|.+
T Consensus 83 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~ 119 (150)
T 2i2y_A 83 NNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFED 119 (150)
T ss_dssp SCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESS
T ss_pred CCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECC
Confidence 99999999999999999999999887 9999999986
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=4.3e-17 Score=125.16 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC--cceEEcc
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST--RPMRIGP 243 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 243 (320)
..+|||+||++.+++++|+++|++ ||.|++|.+..+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 457899999999999999999998 9999999987542 58899999999999999999999999965 9999999
Q ss_pred CCccccc
Q 020847 244 AATKKAA 250 (320)
Q Consensus 244 a~~~~~~ 250 (320)
++++...
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9987533
No 254
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=4.1e-17 Score=119.09 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=71.2
Q ss_pred CCCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 163 DGPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
....++|||+|||.+ +++++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345689999999999 999999999998 999999988 4789999999999999999999999999999999
Q ss_pred ccCCccc
Q 020847 242 GPAATKK 248 (320)
Q Consensus 242 ~~a~~~~ 248 (320)
.|++...
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998654
No 255
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=120.73 Aligned_cols=83 Identities=23% Similarity=0.436 Sum_probs=73.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.++.+..+. +.++|||||+|.+.++|.+|++.|+|..+ .++.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 345567899999999999999999999999999999999884 34899999999999999999999999998 56777
Q ss_pred EeeccCC
Q 020847 148 RLNWATY 154 (320)
Q Consensus 148 ~~~~~~~ 154 (320)
++.++..
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 7777653
No 256
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.4e-17 Score=117.21 Aligned_cols=79 Identities=14% Similarity=0.317 Sum_probs=71.0
Q ss_pred CCCCceEEecCCCC-CCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 163 DGPDFTIFVGDLAA-DVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 163 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
..+.++|||+|||. ++++++|+++|++ ||.|.++.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 45677999999998 9999999999998 9999999884 789999999999999999999999999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++.+...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876543
No 257
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=115.13 Aligned_cols=82 Identities=16% Similarity=0.235 Sum_probs=73.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.| .|.++.++.+ .+|.++|||||+|.+.++|.+|+. ++|..+ .++.++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34567899999999999999999999999 8999999999 789999999999999999999998 999999 566788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8877644
No 258
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=2e-17 Score=125.14 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++|+++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 119 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGREL 119 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3445678999999999999999999999999999999999988999999999999999999999999999999 55677
Q ss_pred EeeccCCC
Q 020847 148 RLNWATYG 155 (320)
Q Consensus 148 ~~~~~~~~ 155 (320)
++.|+...
T Consensus 120 ~V~~a~~~ 127 (135)
T 2lea_A 120 RVQMARYG 127 (135)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 88777654
No 259
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.7e-17 Score=116.18 Aligned_cols=81 Identities=9% Similarity=0.116 Sum_probs=72.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
..+.++|||+|||.++++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|||..+ .++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCe
Confidence 3456899999999999999999 99999999999999988654 89999999999999999999999999 577
Q ss_pred ceEeeccCCC
Q 020847 146 NFRLNWATYG 155 (320)
Q Consensus 146 ~~~~~~~~~~ 155 (320)
.+++.++...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 8888887644
No 260
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=115.48 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=74.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+. ++..+ .++.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~--~g~~l 85 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI--DGRWC 85 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE--TTEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee--CCeEE
Confidence 345567899999999999999999999999999999999998889999999999999999999997 35556 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cqg_A 86 DCKLPNSKQ 94 (103)
T ss_dssp EEECCCTTC
T ss_pred EEEecCCCC
Confidence 888876543
No 261
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=119.07 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=73.0
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
..+.++|||+|||.++++++|+++|++ ||.|..+ . .++.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999998 9988766 2 468899999999999999999999999999999999999
Q ss_pred cCCcccc
Q 020847 243 PAATKKA 249 (320)
Q Consensus 243 ~a~~~~~ 249 (320)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987643
No 262
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=120.51 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCCCceEEe--cCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc-----C
Q 020847 163 DGPDFTIFV--GDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC-----S 235 (320)
Q Consensus 163 ~~~~~~l~v--~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-----~ 235 (320)
..++++||| |||++++++++|+++|++ ||.|.+|.+.. .||||||+|.+.++|.+|++.|||+.+ .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 345679999 779999999999999998 99999988753 278999999999999999999999988 7
Q ss_pred CcceEEccCCcccc
Q 020847 236 TRPMRIGPAATKKA 249 (320)
Q Consensus 236 g~~i~v~~a~~~~~ 249 (320)
|++|.|.|+.....
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 89999999876543
No 263
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=117.08 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=70.4
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC-cccCCcceEE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG-VLCSTRPMRI 241 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~~g~~i~v 241 (320)
...++|||+|||.++++++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 45679999999999999999999998 999 6666553 378999999999999999999999 9999999999
Q ss_pred ccCCccccc
Q 020847 242 GPAATKKAA 250 (320)
Q Consensus 242 ~~a~~~~~~ 250 (320)
.|++++...
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887544
No 264
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=116.18 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 69 SSDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.....++|||+|||++ +++++|+++|+.||.|.+|++++ ++|||||+|.+.++|..|++.|++....-.++.+
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556889999999998 99999999999999999999974 4899999999999999999988765432267778
Q ss_pred EeeccCCC
Q 020847 148 RLNWATYG 155 (320)
Q Consensus 148 ~~~~~~~~ 155 (320)
.+.++...
T Consensus 95 ~V~~a~~~ 102 (112)
T 1x4f_A 95 KVDLSEKY 102 (112)
T ss_dssp EEEEECSC
T ss_pred EEEECccc
Confidence 88887643
No 265
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.7e-17 Score=111.74 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
.+.-|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+ .++.|++.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 456799999999999999999999999999999865 599999999999999999999999988 556666655
Q ss_pred c
Q 020847 152 A 152 (320)
Q Consensus 152 ~ 152 (320)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 266
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.2e-17 Score=110.97 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCce-EEecCCCCCCCHHH----HHHHHHhhC-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 164 GPDFT-IFVGDLAADVTDYV----LQETFRAVY-SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 164 ~~~~~-l~v~nl~~~~t~~~----l~~~f~~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
.++.+ |||+|||+.+++++ |+++|++ | |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34556 99999999999988 5589998 9 599988 23 8999999999999999999999999999
Q ss_pred ceEEccCCcccccc
Q 020847 238 PMRIGPAATKKAAT 251 (320)
Q Consensus 238 ~i~v~~a~~~~~~~ 251 (320)
+|+|.||+.+....
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999999886654
No 267
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=6.8e-18 Score=125.06 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=72.3
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVK--GAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...++|||+|||+++|+++|+++|++ | .|. +|.|++|+. |+++|||||+|.+.++|.+|++ +++..++||.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 44679999999999999999999998 9 676 899999975 9999999999999999999997 4789999999999
Q ss_pred ccCCcc
Q 020847 242 GPAATK 247 (320)
Q Consensus 242 ~~a~~~ 247 (320)
.++..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 268
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=114.58 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||+++++++|+++|+.||.|.++.++++ +|||||+|.+.++|..|++.|++......++.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345689999999999999999999999999999988764 89999999999999999998764332226788888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.|+....
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 8887543
No 269
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=113.38 Aligned_cols=76 Identities=25% Similarity=0.431 Sum_probs=68.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++.++ ..+ .++.+++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999888 777 4555666553
No 270
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=7.4e-18 Score=121.37 Aligned_cols=82 Identities=33% Similarity=0.589 Sum_probs=75.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|++ ||.|..+.++.+. +|.++|||||+|.+.++|.+|++ +|..++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 4579999999999999999999997 9999999999997 89999999999999999999997 999999999999999
Q ss_pred Cccccc
Q 020847 245 ATKKAA 250 (320)
Q Consensus 245 ~~~~~~ 250 (320)
..+...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876543
No 271
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=121.65 Aligned_cols=81 Identities=7% Similarity=0.055 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEF-VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
.....++|||+|||+++|+++|+++|+.||.| .+|+|+.+. +|.++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 44567899999999999999999999999999 889999997 899999999999999999999966 99888 56777
Q ss_pred EeeccC
Q 020847 148 RLNWAT 153 (320)
Q Consensus 148 ~~~~~~ 153 (320)
.+.++.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 777765
No 272
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=115.72 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=71.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA-KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
...++|||+|||.++++++|+++|++ ||.|..+ .++.++.+ |.|||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34679999999999999999999997 9999999 47776533 349999999999999999999999999999999
Q ss_pred cCCccc
Q 020847 243 PAATKK 248 (320)
Q Consensus 243 ~a~~~~ 248 (320)
++.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998873
No 273
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=119.94 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+.. ++..+ .++.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V 100 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEP 100 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999976 88888 6678888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 8877554
No 274
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=122.38 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||+++|+++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|+. +||..+ .++.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34567899999999999999999999999999887777777899999999999999999999998 999999 555666
Q ss_pred eeccC
Q 020847 149 LNWAT 153 (320)
Q Consensus 149 ~~~~~ 153 (320)
+.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 66654
No 275
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=117.64 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC--CCCCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG--TQMPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g--~~~~~~~~~~ 147 (320)
....++|||+|||+++|+++|+++|+.||.|.+|.++.+ +|||||+|.+.++|.+|++.+++ ..+ .++.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l--~Gr~l 99 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 99 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCeEE
Confidence 345689999999999999999999999999999999875 79999999999999999998885 455 67788
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 888877544
No 276
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=9.9e-17 Score=119.36 Aligned_cols=80 Identities=13% Similarity=0.292 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 71 DGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
...++|||+|||+.+++++|+ ++|+.||.|.+|.+.. ++.++|||||+|.+.++|..|++.|||..+ .++.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCCE
Confidence 346889999999999999876 6999999999987753 577899999999999999999999999999 5567
Q ss_pred eEeeccCCC
Q 020847 147 FRLNWATYG 155 (320)
Q Consensus 147 ~~~~~~~~~ 155 (320)
+++.|+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 888887644
No 277
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=7.7e-17 Score=119.26 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=70.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCcccCC--cceEEcc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY-GFVRFGDESEQLRSMTEMNGVLCST--RPMRIGP 243 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~ 243 (320)
..|||+||++.+|+++|+++|++ ||.|.+|.+..+. +|+ |||+|.+.++|.+|++.|||..+.| +.|+|.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 36789999999999999999998 9999999887652 677 9999999999999999999999988 8999999
Q ss_pred CCccccc
Q 020847 244 AATKKAA 250 (320)
Q Consensus 244 a~~~~~~ 250 (320)
+++....
T Consensus 103 ak~~~l~ 109 (130)
T 3zzy_A 103 SKLTSLN 109 (130)
T ss_dssp CSCSSCC
T ss_pred cCCCcee
Confidence 9987543
No 278
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=113.82 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=72.3
Q ss_pred CCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 162 DDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
...+.++|||+|| ++++++|+++|++ ||.|..|.+. .++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3446689999996 8999999999998 9999999884 45889999999999999999999999999999999
Q ss_pred ccCCcccccc
Q 020847 242 GPAATKKAAT 251 (320)
Q Consensus 242 ~~a~~~~~~~ 251 (320)
.|+.++....
T Consensus 82 ~~a~~~~~~~ 91 (97)
T 1x5p_A 82 NIARKQPMLD 91 (97)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCCCCC
Confidence 9998875543
No 279
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.4e-17 Score=117.27 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEE-ecCCCCCccCeEEEEEcCHHHHHHHHHHhc--CCCCCCCCc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVI-RNKQTNFSEGYGFIEFVSHAAAERVLQTFN--GTQMPSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~-~~~~~~~~~g~afv~f~~~~~A~~a~~~l~--g~~~~~~~~ 145 (320)
....++|||+|||.++++++|+++|+.||. |.++.++ .+..+|.++|||||+|.+.++|..|++.|+ +..+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 345789999999999999999999999998 9999998 787888999999999999999999999996 4777 567
Q ss_pred ceEeeccCCCC
Q 020847 146 NFRLNWATYGA 156 (320)
Q Consensus 146 ~~~~~~~~~~~ 156 (320)
.+.+.|+....
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 78888876543
No 280
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=3.9e-17 Score=114.13 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.+++|||+|||.++++++|+++|++ | .|.++.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 4569999999999999999999998 9 99999884 46899999999999999999999999999999999999
Q ss_pred Cccc
Q 020847 245 ATKK 248 (320)
Q Consensus 245 ~~~~ 248 (320)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 281
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=119.35 Aligned_cols=81 Identities=12% Similarity=0.069 Sum_probs=71.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
.....++|||+|||+++|+++|+++|+.||. |.+|.++.+.. |.++|||||+|.+.++|.+|+. ++|..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4457789999999999999999999999998 89999999976 9999999999999999999997 999888 455
Q ss_pred ceEeeccC
Q 020847 146 NFRLNWAT 153 (320)
Q Consensus 146 ~~~~~~~~ 153 (320)
.+++.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 66665544
No 282
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=1.1e-17 Score=117.50 Aligned_cols=78 Identities=19% Similarity=0.439 Sum_probs=70.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWAT 153 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~ 153 (320)
++|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.+ |.+|+..|||..+ .++.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999888999999999999999 9999999999999 45667776665
Q ss_pred C
Q 020847 154 Y 154 (320)
Q Consensus 154 ~ 154 (320)
.
T Consensus 79 ~ 79 (90)
T 2ki2_A 79 P 79 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 283
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=9.8e-17 Score=125.06 Aligned_cols=84 Identities=23% Similarity=0.444 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||+++++++|+++|+.||.|.+|.+..++.+|.++|||||+|.+.++|.+|++.|||..+ .++.+++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 144 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELRV 144 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999998 5678888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 145 ~~a~~~ 150 (158)
T 2kn4_A 145 QMARYG 150 (158)
T ss_dssp EEECCS
T ss_pred EECCCC
Confidence 887754
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=9.8e-17 Score=124.74 Aligned_cols=84 Identities=24% Similarity=0.421 Sum_probs=77.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.+|.|+.+..++.++|||||+|.+.++|.+|+..|++..| .++.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999 5677888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.|+...
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 887643
No 285
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=127.73 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=73.6
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEE--------EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCccc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGA--------KVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLC 234 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v--------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 234 (320)
..++++|||+|||.++++++|+++|++ ||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 345679999999999999999999997 9998764 322 3688999999999999999999999999999
Q ss_pred CCcceEEccCCccccc
Q 020847 235 STRPMRIGPAATKKAA 250 (320)
Q Consensus 235 ~g~~i~v~~a~~~~~~ 250 (320)
.|+.|.|.|+++....
T Consensus 118 ~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 118 FGKPMVVQFARSARPK 133 (143)
T ss_dssp TTEECEEEECCCSCC-
T ss_pred CCcEEEEEECCCCCCc
Confidence 9999999999876544
No 286
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-16 Score=110.06 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=69.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++.|+|..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4567999999999999999999999999999999986 68999999999999999999999998 5677888
Q ss_pred eccCCCCC
Q 020847 150 NWATYGAG 157 (320)
Q Consensus 150 ~~~~~~~~ 157 (320)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88765443
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=112.15 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=63.3
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 73 IRSLWIGDLQPWM------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 73 ~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
.++|||+|||.++ ++++|+++|+.||.|.++.+. ..+|.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3689999999999 789999999999999999987 36788999999999999999999999999999654
No 288
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=117.60 Aligned_cols=80 Identities=21% Similarity=0.311 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCC
Q 020847 70 SDGIRSLWIGDLQPWM------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPST 143 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~ 143 (320)
....++|||+|||..+ |+++|+++|+.||.|.+|.+. ..+|.++|||||+|.+.++|.+|+..|||..+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--D 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--S
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--C
Confidence 4456899999999999 789999999999999999988 36788999999999999999999999999999 4
Q ss_pred Cc-ceEeeccC
Q 020847 144 EQ-NFRLNWAT 153 (320)
Q Consensus 144 ~~-~~~~~~~~ 153 (320)
++ .+++.++.
T Consensus 88 g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 KQHTFRVNLFT 98 (105)
T ss_dssp TTCEEEEECSC
T ss_pred CCceEEEEEcc
Confidence 55 78888775
No 289
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=2.2e-16 Score=121.29 Aligned_cols=83 Identities=8% Similarity=0.195 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
+....+|||+||++.+|+++|+++|+.||.|.+|++..+. ++|||||+|.+.++|++|++.|||..|.+.++.+++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445779999999999999999999999999999987542 578999999999999999999999999876788999
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.|++...
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9988653
No 290
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=116.93 Aligned_cols=86 Identities=10% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHhcccCCeeEEEEEecCCCC---CccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIA---SIFGHTGEFVSGKVIRNKQTN---FSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~---~~f~~~G~v~~~~~~~~~~~~---~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
.....++|||+|||+++++++|+ ++|+.||.|.+|.+..+..++ .++|||||+|.+.++|.+|++.|||..+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-- 88 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-- 88 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--
Confidence 34457899999999999999999 999999999999999886644 4569999999999999999999999999
Q ss_pred CCcceEeeccCCCC
Q 020847 143 TEQNFRLNWATYGA 156 (320)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (320)
.++.+++.++....
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 57788888887554
No 291
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-16 Score=111.24 Aligned_cols=80 Identities=20% Similarity=0.449 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.++.+..+ +|||||+|.+.++|.+|++.|||..+.+.++.+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999988753 78999999999999999999999999644788888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.|+...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 887654
No 292
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.9e-17 Score=122.97 Aligned_cols=82 Identities=10% Similarity=0.038 Sum_probs=72.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
......++|||+|||+++|+++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|++|++ ++|..+ .+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~g 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GH 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CC
Confidence 34456789999999999999999999999999 88999999976 9999999999999999999997 999988 55
Q ss_pred cceEeeccC
Q 020847 145 QNFRLNWAT 153 (320)
Q Consensus 145 ~~~~~~~~~ 153 (320)
+.|++.++.
T Consensus 115 r~i~V~~a~ 123 (136)
T 2hgl_A 115 RYIEVFKSH 123 (136)
T ss_dssp SEEEEEECC
T ss_pred EEEEEEECC
Confidence 667776653
No 293
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=114.39 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=70.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC---cc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE---QN 146 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~---~~ 146 (320)
....++|||+|||+++|+++|+++|+.||.|..|.++.+ |||||+|.+.++|.+|++.|||..+.+.. +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999875 89999999999999999999999985422 78
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
|++.++....
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 8888877544
No 294
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.1e-17 Score=118.77 Aligned_cols=75 Identities=19% Similarity=0.406 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.++++.+ ++|||||+|.+.++|.+|+..|+|..+ .++.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 3468999999999999999999999999999999873 589999999999999999999999999 56777777
Q ss_pred ccC
Q 020847 151 WAT 153 (320)
Q Consensus 151 ~~~ 153 (320)
|+.
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 765
No 295
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=114.22 Aligned_cols=82 Identities=27% Similarity=0.361 Sum_probs=71.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||.| +++.+ .++.++|||||+|.+.++|.+|+..|+|..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 45568999999999999999999999999966 56666 6788999999999999999999999999998 567888
Q ss_pred eeccCCCC
Q 020847 149 LNWATYGA 156 (320)
Q Consensus 149 ~~~~~~~~ 156 (320)
+.++....
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 88877553
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.1e-17 Score=120.46 Aligned_cols=80 Identities=10% Similarity=0.053 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE---FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~---v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
....++|||+|||+++|+++|+++|+.||. |.+|+++.+.. |+++|||||+|.+.++|.+|++ ++|..+ .++.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCeE
Confidence 456789999999999999999999999998 89999999965 9999999999999999999997 999888 5566
Q ss_pred eEeeccC
Q 020847 147 FRLNWAT 153 (320)
Q Consensus 147 ~~~~~~~ 153 (320)
|++.++.
T Consensus 90 i~V~~a~ 96 (118)
T 2db1_A 90 IEVFKSH 96 (118)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 7776553
No 297
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=112.22 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|++.|+|..+ .++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~ 82 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQLR 82 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceEE
Confidence 3456789999999999999999999999999999999854 79999999999999999999999999 557778
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 8877654
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=112.97 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=69.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
..++|||+|||.++++++|+++|++ ||.|.+| +.+..+|. ||||+|.+.++|.+|++ |||..++|+.|.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 3469999999999999999999997 9999987 55554554 99999999999999999 9999999999999998
Q ss_pred Ccccc
Q 020847 245 ATKKA 249 (320)
Q Consensus 245 ~~~~~ 249 (320)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76643
No 299
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=113.22 Aligned_cols=84 Identities=20% Similarity=0.423 Sum_probs=73.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 3455679999999999999999999999774 788888888899999999999999999999999999998 56678
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
.+.++....
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 888876543
No 300
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-17 Score=118.14 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+ .++.+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 345789999999999999999999999999877 666776778899999999999999999998 999999 5677888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 877644
No 301
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=4.8e-17 Score=118.01 Aligned_cols=80 Identities=13% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
+...++|||+|||+++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|++|++.|||..+ .++.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i~ 98 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVIT 98 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 34568999999999999999999999999 8999888543 3799999999999999999999999999 567788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 8777643
No 302
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=2.3e-16 Score=113.39 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCCceEEecCCCC-----CCCHHHHHHHHHhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhcCcccCCc
Q 020847 164 GPDFTIFVGDLAA-----DVTDYVLQETFRAVYSSVKGAKVVTDRT-TGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTR 237 (320)
Q Consensus 164 ~~~~~l~v~nl~~-----~~t~~~l~~~f~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 237 (320)
.++++|+|.||.. +.++++|+++|++ ||.|.+|.|++++. ++.++|+|||+|.+.++|.+|++.|||+.++||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3567999999963 3478999999998 99999999999864 368899999999999999999999999999999
Q ss_pred ceEEccCCccc
Q 020847 238 PMRIGPAATKK 248 (320)
Q Consensus 238 ~i~v~~a~~~~ 248 (320)
.|.|.|+....
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999997643
No 303
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1e-16 Score=119.62 Aligned_cols=81 Identities=15% Similarity=0.316 Sum_probs=74.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||.++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|+|..+ .++.+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 8999999 567777777
Q ss_pred cCCC
Q 020847 152 ATYG 155 (320)
Q Consensus 152 ~~~~ 155 (320)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 304
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=8.2e-17 Score=116.53 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..+.++|||+|||+++|+++|+++|+.| .|.+|.|+.++. |+++|||||+|.+.++|.+|+ .+|+..+ .++.|.+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEE
Confidence 3456899999999999999999999999 799999999964 999999999999999999999 7999888 4556666
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 305
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=110.15 Aligned_cols=75 Identities=23% Similarity=0.415 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHh-cCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTF-NGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l-~g~~~~~~~~~~~ 148 (320)
....++|||+|||.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|++.| +|..+ .++.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEEE
Confidence 456789999999999999999999999999999999864 799999999999999999988 88888 456677
Q ss_pred eecc
Q 020847 149 LNWA 152 (320)
Q Consensus 149 ~~~~ 152 (320)
+.|+
T Consensus 81 v~~a 84 (85)
T 2ytc_A 81 VKWG 84 (85)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7665
No 306
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.5e-16 Score=124.84 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||..+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|+..|||..| .++.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999999998 5677888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.|+....
T Consensus 147 ~~a~~~~ 153 (165)
T 1rk8_A 147 DWCFVKG 153 (165)
T ss_dssp EESEECC
T ss_pred EEecCCC
Confidence 8776443
No 307
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-16 Score=110.67 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..+ .++.+++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 44578999999999999999999999999986 666654 3799999999999999999999999999 5566777
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
.++..
T Consensus 89 ~~a~~ 93 (97)
T 2e5j_A 89 ALARQ 93 (97)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 77654
No 308
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.6e-16 Score=115.26 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|+|..+ .++.+.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 96 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPLE 96 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 34567899999999999999999999999999999987 78999999999999999999999999 667788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 8887654
No 309
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=8.5e-17 Score=132.65 Aligned_cols=80 Identities=18% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTG--EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.|+.+|.++|||||+|.+.++|.+||+.|||..| .++.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 678999999999999999999999999 999999999999999999999999999999999999999999 4566666
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
.++.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 6654
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=6e-16 Score=114.04 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=67.6
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhcCcccCC--cceEEccC
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGY-GFVRFGDESEQLRSMTEMNGVLCST--RPMRIGPA 244 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g--~~i~v~~a 244 (320)
.|||+||++.+++++|+++|++ ||.|.+|.|... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.||
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4679999999999999999998 999999998652 275 9999999999999999999999987 68999999
Q ss_pred Ccccc
Q 020847 245 ATKKA 249 (320)
Q Consensus 245 ~~~~~ 249 (320)
+++..
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 98754
No 311
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=4.6e-17 Score=110.19 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=64.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 75 SLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 75 ~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
+|||+|||.++++++|+++|+.||.|.++.+..++.+|.++|||||+|.+.++|.+|++ +++..+.|+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l 70 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKC 70 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEE
Confidence 59999999999999999999999999999999998889999999999999999999996 58888844443
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=116.42 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.++.+..+..+|.++|||||+|.+.++|.+|++.|+|..+ .++.+.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 34568999999999999999999999999984433322223677899999999999999999999999999 5677888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 8876543
No 313
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=3.9e-16 Score=115.49 Aligned_cols=81 Identities=9% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCe-EEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGY-GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
...-.|||+||++.+|+++|+++|+.||.|.+|++..+ .+|| |||+|.+.++|.+|++.|||..+.+..+.+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 34566889999999999999999999999999998875 3688 99999999999999999999999876688999
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.+++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9987653
No 314
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=4.3e-15 Score=109.48 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=69.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCe-EEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGY-GFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~-afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
....|||+||++.+|+++|+++|+.||.|.+|++... .|| |||+|.+.++|..|++.|||..|.+..+.+++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3445789999999999999999999999999998652 386 999999999999999999999998777889999
Q ss_pred ccCCCC
Q 020847 151 WATYGA 156 (320)
Q Consensus 151 ~~~~~~ 156 (320)
++....
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 887553
No 315
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=116.04 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
.+..++|||+|||.++++++|+++|+.||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..+ .++.+.+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 78 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYL 78 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 44578999999999999999999999999999998864 589999999999999999999999999 5667777
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
.|+..
T Consensus 79 ~~a~~ 83 (111)
T 1whx_A 79 EWAPI 83 (111)
T ss_dssp EEEET
T ss_pred EECCC
Confidence 77654
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=2.3e-16 Score=110.25 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=62.7
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc--cCCcceEE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL--CSTRPMRI 241 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--~~g~~i~v 241 (320)
.+..+|||+|||+++++++|+++|++ ||.|.++.++++ +||||||+|.+.++|.+ |+|.. +.|+.|.|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 45669999999999999999999998 999999998865 69999999999999883 56655 46999999
Q ss_pred ccCCcccc
Q 020847 242 GPAATKKA 249 (320)
Q Consensus 242 ~~a~~~~~ 249 (320)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987643
No 317
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=7.6e-16 Score=110.91 Aligned_cols=77 Identities=19% Similarity=0.401 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.+|.+. ++||||+|.+.++|.+|++.|+|..+ .++.+.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 77 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDL--EGENIEI 77 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEEE
Confidence 4457899999999999999999999999999999885 56999999999999999999999998 5678888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.++....
T Consensus 78 ~~a~~~~ 84 (103)
T 2dgu_A 78 VFAKPPD 84 (103)
T ss_dssp EECCCCC
T ss_pred EEcCCCc
Confidence 8876543
No 318
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=112.61 Aligned_cols=80 Identities=19% Similarity=0.441 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|+..|+|..+ .++.+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 445789999999999999999999999999999999875 79999999999999999999999998 5678888
Q ss_pred eccCCCCC
Q 020847 150 NWATYGAG 157 (320)
Q Consensus 150 ~~~~~~~~ 157 (320)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 88876543
No 319
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=2.1e-16 Score=116.14 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc-----e
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP-----M 239 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~-----i 239 (320)
..++|||+|||.++++++|+++|++ ||.|..|.|+.+ |||||+|.+.++|.+||+.|||..++|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 3569999999999999999999997 999999998754 79999999999999999999999999999 5
Q ss_pred EEccCCc
Q 020847 240 RIGPAAT 246 (320)
Q Consensus 240 ~v~~a~~ 246 (320)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555444
No 320
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=6.8e-16 Score=109.73 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=66.6
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||. ++++++|+++|+.||.|.++.+ .+|||||+|.+.++|.+|+..|+|..+ .++.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 88 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMN--FGKKLI 88 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEE--TTEECE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 34568999999998 9999999999999999999988 279999999999999999999999998 566777
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 777653
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=5.6e-16 Score=114.66 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=71.1
Q ss_pred CCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEc
Q 020847 163 DGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIG 242 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 242 (320)
....++|||+|| ++++++|+++|++ ||.|.+|.+. .++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345789999996 6999999999998 9999999885 358999999999999999999999999999999999
Q ss_pred cCCccccc
Q 020847 243 PAATKKAA 250 (320)
Q Consensus 243 ~a~~~~~~ 250 (320)
|+.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99987544
No 322
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.5e-16 Score=108.01 Aligned_cols=79 Identities=14% Similarity=0.339 Sum_probs=69.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.++.+. ++||||+|.+.++|.+|++.|||..+ .++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 74 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEF--QGKRM 74 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCee--CCcEE
Confidence 345677999999999999999999999999999999986 44999999999999999999999999 56788
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.++....
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 888876543
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=6.5e-16 Score=122.18 Aligned_cols=84 Identities=14% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 68 ASSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 68 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
......++|||+|||.++++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|.+|++.|+|..+ .++.|
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l 159 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPM 159 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEE
Confidence 345667899999999999999999999999999999999997 899999999999999999999999999999 55677
Q ss_pred EeeccCC
Q 020847 148 RLNWATY 154 (320)
Q Consensus 148 ~~~~~~~ 154 (320)
.+.|+..
T Consensus 160 ~V~~a~~ 166 (177)
T 2f3j_A 160 DIQLVAS 166 (177)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 7777653
No 324
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=115.08 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=67.2
Q ss_pred CCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 164 GPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTT---GRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...++|||+|||.++++++|+++|++ ||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34679999999999999999999998 99999 888877666 7999999999999999999999984 36677776
Q ss_pred EccCC
Q 020847 241 IGPAA 245 (320)
Q Consensus 241 v~~a~ 245 (320)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66544
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=3.4e-16 Score=109.11 Aligned_cols=71 Identities=20% Similarity=0.472 Sum_probs=65.4
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhC----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVY----S-------SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
..++|||+|||.++++++|+++|++ | | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 4569999999999999999999998 9 8 8999888654 899999999999999999 999999
Q ss_pred cCCcceEEcc
Q 020847 234 CSTRPMRIGP 243 (320)
Q Consensus 234 ~~g~~i~v~~ 243 (320)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 326
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.5e-16 Score=120.18 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=68.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||+++|+++|+++|+.|| +.+|.|+.|+. |+++|||||+|.+.++|++|+ .+|+..+. ++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEEE
Confidence 345678999999999999999999999999 66999999965 999999999999999999999 88999884 45666
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 117 V~~a~~ 122 (139)
T 2hgn_A 117 LFLNST 122 (139)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 665543
No 327
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=107.32 Aligned_cols=77 Identities=19% Similarity=0.443 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++|+++|+++|+.||.|.++.+. ++||||+|.+.++|.+|++.|+|..+ .++.+.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 34567899999999999999999999999999999986 44999999999999999999999998 567788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8887654
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=4.2e-16 Score=115.44 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=66.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCee--EEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFV--SGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~ 147 (320)
....++|||+|||+++|+++|+++|+.| .|. +|+|+.|+. |+++|||||+|.+.++|.+|++ +++..+ .++.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l--~gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERI--GHRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCB--TTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEE--CCEEE
Confidence 3456889999999999999999999999 576 899999976 9999999999999999999996 577777 44556
Q ss_pred Eeecc
Q 020847 148 RLNWA 152 (320)
Q Consensus 148 ~~~~~ 152 (320)
++..+
T Consensus 114 ~V~~a 118 (126)
T 2hgm_A 114 EVFKS 118 (126)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 55544
No 329
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.3e-15 Score=107.54 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=68.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHT--GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~--G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
.....++|||+|||.++|+++|+++|+.| |.|.++.+. +|||||+|.+.++|.+|+..|+|..+ .++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcE
Confidence 34567899999999999999999999999 889888763 67999999999999999999999999 5678
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
+.+.++....
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 8888887554
No 330
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=2.7e-16 Score=111.99 Aligned_cols=81 Identities=19% Similarity=0.359 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 70 SDGIRSLWIGDLQPWMEESYIA----SIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
....++|||+|||.++++++|+ ++|+.||.|.+|.+.. +|.++|||||+|.+.++|..|+..|+|..+ .++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~ 79 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YDK 79 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CCc
Confidence 3456899999999999999999 9999999999998874 456799999999999999999999999998 567
Q ss_pred ceEeeccCCC
Q 020847 146 NFRLNWATYG 155 (320)
Q Consensus 146 ~~~~~~~~~~ 155 (320)
.+.+.++...
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 8888887654
No 331
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-17 Score=122.25 Aligned_cols=85 Identities=15% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVS--------GKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
....++|||+|||.++++++|+++|+.||.|.+ |.+..++.++.++|||||+|.+.++|.+|++.|||..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 345689999999999999999999999999998 89999988899999999999999999999999999999
Q ss_pred CCCcceEeeccCCCC
Q 020847 142 STEQNFRLNWATYGA 156 (320)
Q Consensus 142 ~~~~~~~~~~~~~~~ 156 (320)
.++.+++.++....
T Consensus 83 -~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 -SGNPIKVSFATRRA 96 (116)
Confidence 46677777776543
No 332
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1e-15 Score=122.82 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHh--cCCCCCCCCcceEeeccCCCCCCC--CCCCCCCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEE
Q 020847 124 SHAAAERVLQTF--NGTQMPSTEQNFRLNWATYGAGER--RQDDGPDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKV 199 (320)
Q Consensus 124 ~~~~A~~a~~~l--~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i 199 (320)
+.+.+..|++.. ....+.+.+..++.......+... .......++|||+|||.++++++|+++|++ ||.|..|.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CCCEEEEEE
Confidence 567777777655 232333333333333111100000 001123479999999999999999999998 999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCccc
Q 020847 200 VTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK 248 (320)
Q Consensus 200 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~ 248 (320)
+++. +|.++|||||+|.+.++|.+|+..+ +..++|+.|.|.+++...
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 9985 5899999999999999999999765 458999999999987653
No 333
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=116.48 Aligned_cols=77 Identities=12% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEF----VSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v----~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+ .+|+++|||||+|.+.++|.+|++. ++..+ .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 467899999999999999999999999975 68999998 5899999999999999999999965 88777 4445
Q ss_pred eEeec
Q 020847 147 FRLNW 151 (320)
Q Consensus 147 ~~~~~ 151 (320)
|++..
T Consensus 97 i~V~~ 101 (123)
T 2dha_A 97 IELFR 101 (123)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 55544
No 334
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=1.6e-16 Score=114.31 Aligned_cols=79 Identities=23% Similarity=0.471 Sum_probs=68.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|.+|+. ++..+ .++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEE
Confidence 3456899999999999999999999999999999999997 89999999999999999999997 77666 4455555
Q ss_pred eccC
Q 020847 150 NWAT 153 (320)
Q Consensus 150 ~~~~ 153 (320)
.++.
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 5543
No 335
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=2e-15 Score=107.19 Aligned_cols=75 Identities=16% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQP-WMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||. ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l~ 76 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF--GKKLI 76 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB--TTTBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC--CcEEE
Confidence 45678999999998 99999999999999999999983 789999999999999999999999995 45566
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 77 V~~a~~ 82 (96)
T 2kvi_A 77 LEVSSS 82 (96)
T ss_dssp EEEEEC
T ss_pred EEEcCc
Confidence 666543
No 336
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.7e-16 Score=112.44 Aligned_cols=65 Identities=23% Similarity=0.451 Sum_probs=59.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCC---CCccCeEEEEEcCHHHHHHHHHHh
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT---NFSEGYGFIEFVSHAAAERVLQTF 135 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---~~~~g~afv~f~~~~~A~~a~~~l 135 (320)
....++|||+|||+++|+++|+++|+.||.|. +.++.+..+ |.++|||||+|.+.++|.+|++.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 34678999999999999999999999999998 888887666 789999999999999999999988
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.6e-15 Score=106.13 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=65.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||.++|+++|+++|+.||.|.+| +.+..+|. ||||+|.+.++|.+|+. |+|..+ .++.+.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V 76 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRV 76 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEE
Confidence 3456899999999999999999999999999987 55555544 99999999999999998 999999 4566666
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.++...
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 666533
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=107.71 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSG-KVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~-~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||+++++++|+++|+.||.|.++ .++.++.+ +.|||+|.+.++|.+|+..|||..+ .++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 85 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQL--ENFTLK 85 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 3456899999999999999999999999999999 58877643 3399999999999999999999999 566777
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 7776643
No 339
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=111.15 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=65.7
Q ss_pred CCCceEEE--cCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC---CCCCc
Q 020847 71 DGIRSLWI--GDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM---PSTEQ 145 (320)
Q Consensus 71 ~~~~~v~v--~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~---~~~~~ 145 (320)
...++||| |||++++++++|+++|+.||.|.++.+.. .+|||||+|.+.++|++|++.|||..+ .+.++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45678999 78999999999999999999999988753 389999999999999999999999865 34466
Q ss_pred ceEeeccC
Q 020847 146 NFRLNWAT 153 (320)
Q Consensus 146 ~~~~~~~~ 153 (320)
++.+.++.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 66666654
No 340
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.7e-16 Score=108.72 Aligned_cols=78 Identities=21% Similarity=0.514 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC-CCCCCCCcce
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGE-FVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG-TQMPSTEQNF 147 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~-v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g-~~~~~~~~~~ 147 (320)
....++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+ .++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEE
Confidence 346689999999999999999999999999 6555552 489999999999999999999999 888 56778
Q ss_pred EeeccCCCC
Q 020847 148 RLNWATYGA 156 (320)
Q Consensus 148 ~~~~~~~~~ 156 (320)
++.|+....
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 888876543
No 341
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=4.9e-15 Score=107.98 Aligned_cols=75 Identities=23% Similarity=0.397 Sum_probs=67.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 70 SDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
....++|||+|||.+ +++++|+++|+.||.|.+|.+ ++|||||+|.+.++|.+|++.|+|..+ .++.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 344689999999999 999999999999999999998 489999999999999999999999999 566777
Q ss_pred eeccCC
Q 020847 149 LNWATY 154 (320)
Q Consensus 149 ~~~~~~ 154 (320)
+.++..
T Consensus 94 V~~a~~ 99 (110)
T 1wf1_A 94 INMAGE 99 (110)
T ss_dssp EEESCC
T ss_pred EEECCC
Confidence 777764
No 342
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=6.4e-16 Score=107.96 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
....+|||+|||+++|+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|. .++|..+.+.++.+.+.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 45678999999999999999999999999999999875 6999999999999998 35777766678888888
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 87643
No 343
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.1e-15 Score=125.28 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCCCceEEecCCCCCC---------CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 163 DGPDFTIFVGDLAADV---------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
...+++|||+||+..+ ++++|+++|++ ||.|++|.|+.+ +|||||+|.+.++|+.|+++|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 79999999998 999999999854 8999999999999999999999999
Q ss_pred c------------CCcceEEccCCcccc
Q 020847 234 C------------STRPMRIGPAATKKA 249 (320)
Q Consensus 234 ~------------~g~~i~v~~a~~~~~ 249 (320)
+ .|+.|.|.||+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EeccccccccccCCCCEEEEEEccCCCC
Confidence 9 899999999987643
No 344
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=110.25 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceE
Q 020847 69 SSDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFR 148 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~ 148 (320)
.....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..+ .++.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 34567999999999999999999999999977655 24677899999999999999999999999988 567788
Q ss_pred eeccCCC
Q 020847 149 LNWATYG 155 (320)
Q Consensus 149 ~~~~~~~ 155 (320)
+.++...
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 8887644
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=3e-16 Score=113.83 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=66.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcC----HHH----HHHHHH--HhcCCC
Q 020847 74 RSLWIGDL----QPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS----HAA----AERVLQ--TFNGTQ 139 (320)
Q Consensus 74 ~~v~v~nl----p~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~----~~~----A~~a~~--~l~g~~ 139 (320)
.+|||+|| |+++++.+|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 888887 689999
Q ss_pred CCCCCcceEeecc
Q 020847 140 MPSTEQNFRLNWA 152 (320)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (320)
|. ++.+++...
T Consensus 83 I~--Gr~irV~ln 93 (136)
T 2j8a_A 83 IM--GFKFEVILN 93 (136)
T ss_dssp ET--TEEEEEEEC
T ss_pred ec--CcEEEEEEC
Confidence 94 455555443
No 346
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=9.6e-16 Score=106.98 Aligned_cols=76 Identities=9% Similarity=0.152 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
+..++|||+|||.++++++|+++|+.| .|.++.+. .++|||||+|.+.++|.+|++.|||..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 456899999999999999999999999 89999884 3799999999999999999999999999 66778888
Q ss_pred ccCCC
Q 020847 151 WATYG 155 (320)
Q Consensus 151 ~~~~~ 155 (320)
++...
T Consensus 74 ~a~~~ 78 (88)
T 1wg1_A 74 LQPTD 78 (88)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 87543
No 347
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-14 Score=99.88 Aligned_cols=72 Identities=13% Similarity=0.250 Sum_probs=62.2
Q ss_pred Cce-EEEcCCCCCCCHHH----HHHHhcccC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcc
Q 020847 73 IRS-LWIGDLQPWMEESY----IASIFGHTG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQN 146 (320)
Q Consensus 73 ~~~-v~v~nlp~~~t~~~----l~~~f~~~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~ 146 (320)
..+ |||+|||+++++++ |+++|+.|| .|.+| +| |+|||.|.+.++|.+|++.|+|..+ .+++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr~ 75 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGNR 75 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCce
Confidence 444 99999999999998 558999995 99887 22 9999999999999999999999999 6778
Q ss_pred eEeeccCCCC
Q 020847 147 FRLNWATYGA 156 (320)
Q Consensus 147 ~~~~~~~~~~ 156 (320)
+++.++....
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 8888877543
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.5e-16 Score=108.70 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=66.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccC
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPA 244 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 244 (320)
.+++|||+|||.++++++|+++|++ ||.|.++.++++ ++|||||+|.+.++|.+|+. ....+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 4579999999999999999999998 999999998765 68999999999999975432 134458999999999
Q ss_pred Cccccc
Q 020847 245 ATKKAA 250 (320)
Q Consensus 245 ~~~~~~ 250 (320)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887544
No 349
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.4e-15 Score=103.91 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|| ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..+ .++.+.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 81 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 81 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEE
Confidence 446789999996 99999999999999999999984 3689999999999999999999999998 6678888
Q ss_pred eccCCCC
Q 020847 150 NWATYGA 156 (320)
Q Consensus 150 ~~~~~~~ 156 (320)
.|+....
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 8887543
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=3.6e-15 Score=109.46 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC---cce
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE---QNF 147 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~---~~~ 147 (320)
...++|||+|||+++++++|+++|+.||.|.+|.++.+ |||||+|.+.++|.+|++.|||..+.+.. ..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999998764 89999999999999999999999996654 225
Q ss_pred EeeccC
Q 020847 148 RLNWAT 153 (320)
Q Consensus 148 ~~~~~~ 153 (320)
++....
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 555444
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=3.4e-15 Score=107.34 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=72.2
Q ss_pred CCCceEEecCC--CCCCC--------HHHHHHHHHhhCCCeeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 164 GPDFTIFVGDL--AADVT--------DYVLQETFRAVYSSVKGAKVVTDRTT--GRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 164 ~~~~~l~v~nl--~~~~t--------~~~l~~~f~~~~g~i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
.++++|.|.|+ +.++. ++||++.|++ ||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35679999998 33443 4799999998 999999999988654 36799999999999999999999999
Q ss_pred cccCCcceEEccCCccc
Q 020847 232 VLCSTRPMRIGPAATKK 248 (320)
Q Consensus 232 ~~~~g~~i~v~~a~~~~ 248 (320)
+.++||.|.|.|+....
T Consensus 82 ~~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPDS 98 (105)
T ss_dssp CEETTEECEEEEECHHH
T ss_pred CEeCCCEEEEEEeCHHH
Confidence 99999999999987543
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=106.30 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCCCCceEEecCCCCCC-----------CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 162 DDGPDFTIFVGDLAADV-----------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 162 ~~~~~~~l~v~nl~~~~-----------t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
...++++|+|.||.... ++++|+++|++ ||.|.+|.| .+. .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 44567899999994433 26899999998 999999965 553 379999999999999999999999
Q ss_pred CcccCCcceEEccCCcccc
Q 020847 231 GVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 231 g~~~~g~~i~v~~a~~~~~ 249 (320)
|..++|+.|+|.|+.++..
T Consensus 86 g~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TCEETTEECEEEECCSCCC
T ss_pred CCEECCcEEEEEEeCCCCC
Confidence 9999999999999987643
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=5.4e-16 Score=118.67 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=69.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEE-----EecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKV-----IRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~-----~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
....++|||+|||+++|+++|+++|+.||.|..+.+ +....+|.++|||||+|.+.++|.+|+..|||..+ .+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 345689999999999999999999999999876410 11124677899999999999999999999999999 56
Q ss_pred cceEeeccCCC
Q 020847 145 QNFRLNWATYG 155 (320)
Q Consensus 145 ~~~~~~~~~~~ 155 (320)
+.+.+.++...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 77888887644
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=4.9e-15 Score=103.17 Aligned_cols=72 Identities=18% Similarity=0.457 Sum_probs=63.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHT----G-------EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGT 138 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~----G-------~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~ 138 (320)
....++|||+|||.++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3567899999999999999999999999 8 8999988754 899999999999999999 99999
Q ss_pred CCCCCCcceEee
Q 020847 139 QMPSTEQNFRLN 150 (320)
Q Consensus 139 ~~~~~~~~~~~~ 150 (320)
.+. ++.+++.
T Consensus 76 ~~~--g~~l~V~ 85 (87)
T 2hzc_A 76 IFQ--GQSLKIR 85 (87)
T ss_dssp EET--TEECEEE
T ss_pred EEC--CeEEEEe
Confidence 994 4445543
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.7e-15 Score=103.05 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEee
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLN 150 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~ 150 (320)
...++|||+|||.++++++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|++ +++..+...++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 45689999999999999999999999999999999865 69999999999999975 4555555577888888
Q ss_pred ccCCCC
Q 020847 151 WATYGA 156 (320)
Q Consensus 151 ~~~~~~ 156 (320)
++....
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 877554
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=7.7e-15 Score=107.49 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=71.2
Q ss_pred CCceEEecCCCC--CC---CHHHHHHHHHhhCCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 165 PDFTIFVGDLAA--DV---TDYVLQETFRAVYSSVKGAKVVTDRT----TGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 165 ~~~~l~v~nl~~--~~---t~~~l~~~f~~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
++++|+|.|+-. ++ .++||++.|++ ||.|.+|.|+++.. ++.++|++||+|.+.++|.+|++.|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 466999999842 22 37899999998 99999999999854 3567899999999999999999999999999
Q ss_pred CcceEEccCCcc
Q 020847 236 TRPMRIGPAATK 247 (320)
Q Consensus 236 g~~i~v~~a~~~ 247 (320)
||.|.|.|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998754
No 357
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=8.6e-15 Score=131.78 Aligned_cols=83 Identities=16% Similarity=0.279 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|||..+|+++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||..|||..| .+..|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999 5666777
Q ss_pred eccCC
Q 020847 150 NWATY 154 (320)
Q Consensus 150 ~~~~~ 154 (320)
.++..
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 77653
No 358
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.55 E-value=1.9e-15 Score=108.53 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=63.7
Q ss_pred ecCCCCCCCHHHHHHHH------------HhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcc
Q 020847 171 VGDLAADVTDYVLQETF------------RAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRP 238 (320)
Q Consensus 171 v~nl~~~~t~~~l~~~f------------~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 238 (320)
+.||+..+++++|++.| ++ ||.|.+|.|.++. ++.++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 56777777887777666 97 9999999999885 5789999999999999999999999999999999
Q ss_pred eEEccC
Q 020847 239 MRIGPA 244 (320)
Q Consensus 239 i~v~~a 244 (320)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 359
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.54 E-value=3.4e-14 Score=105.06 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEe
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRL 149 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~ 149 (320)
....++|||+|| ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..+ .++.+.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~V 105 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLKV 105 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEE
Confidence 456789999996 79999999999999999999986 2689999999999999999999999999 5677888
Q ss_pred eccCCC
Q 020847 150 NWATYG 155 (320)
Q Consensus 150 ~~~~~~ 155 (320)
.|+...
T Consensus 106 ~~a~~~ 111 (121)
T 2bz2_A 106 NIARKQ 111 (121)
T ss_dssp EECCSS
T ss_pred EEeCCC
Confidence 887654
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=5.6e-14 Score=100.89 Aligned_cols=81 Identities=10% Similarity=0.027 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhcccCCeeEEEEEecCCC-CCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 71 DGIRSLWIGDLQP-----WMEESYIASIFGHTGEFVSGKVIRNKQT-NFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 71 ~~~~~v~v~nlp~-----~~t~~~l~~~f~~~G~v~~~~~~~~~~~-~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
..+++|+|.||-. +-++++|++.|++||.|.++++..++.+ +.++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 4568999999963 3478999999999999999999998654 67899999999999999999999999999 55
Q ss_pred cceEeeccC
Q 020847 145 QNFRLNWAT 153 (320)
Q Consensus 145 ~~~~~~~~~ 153 (320)
+.+.+.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 667776654
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.50 E-value=5.5e-14 Score=115.24 Aligned_cols=80 Identities=20% Similarity=0.376 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCC
Q 020847 70 SDGIRSLWIGDLQPWM---------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQM 140 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~ 140 (320)
....++|||+||+.++ ++++|+++|+.||.|.+|+++. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578999999999998 7999999999999999999986 489999999999999999999999998
Q ss_pred C----------CCCcceEeeccCCC
Q 020847 141 P----------STEQNFRLNWATYG 155 (320)
Q Consensus 141 ~----------~~~~~~~~~~~~~~ 155 (320)
. +.++.|.+.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 2 25678888888754
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=6.3e-14 Score=112.41 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeec
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNW 151 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~ 151 (320)
..++|||+|||.++|+++|+++|+.||.|.+|++.++. +|.++|||||+|.+.++|.+|+..++ ..+ .++.+.+.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 35899999999999999999999999999999999985 58899999999999999999996554 456 566777776
Q ss_pred cC
Q 020847 152 AT 153 (320)
Q Consensus 152 ~~ 153 (320)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.6e-13 Score=94.87 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcccc
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKA 249 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~~~ 249 (320)
..+++++|+++|++ ||.|.+|.|+ +.++|||||+|.+.++|.+|++.+++ +.|++|+|.|++.+..
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 57899999999998 9999999987 35799999999999999999987554 6799999999987754
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.42 E-value=4.7e-13 Score=97.23 Aligned_cols=80 Identities=8% Similarity=0.047 Sum_probs=67.2
Q ss_pred CCCceEEecCCCCCC----------CHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 164 GPDFTIFVGDLAADV----------TDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 164 ~~~~~l~v~nl~~~~----------t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.++++|.|.|+=... .++||++.|++ ||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 356688888883321 24689999998 9999999886552 58999999999999999999999999
Q ss_pred cCCcceEEccCCccc
Q 020847 234 CSTRPMRIGPAATKK 248 (320)
Q Consensus 234 ~~g~~i~v~~a~~~~ 248 (320)
++||.|.|.|+....
T Consensus 80 f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 80 FAGKMITAAYVPLPT 94 (114)
T ss_dssp ETTEECEEEEECHHH
T ss_pred ECCEEEEEEEEcHHH
Confidence 999999999987553
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=3.4e-13 Score=116.49 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=66.1
Q ss_pred CCCCceEEecC--CCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC---Cc
Q 020847 163 DGPDFTIFVGD--LAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS---TR 237 (320)
Q Consensus 163 ~~~~~~l~v~n--l~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 237 (320)
..++++|||+| |+..+|+++|+++|++ ||.|.+|.+.. +||||||+|.+.++|.+|+++|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 45677999999 5789999999999998 99999887643 4799999999999999999999998872 44
Q ss_pred --ceEEccCCc
Q 020847 238 --PMRIGPAAT 246 (320)
Q Consensus 238 --~i~v~~a~~ 246 (320)
.|.|.|+..
T Consensus 88 ~~~ly~~~~~~ 98 (345)
T 3tht_A 88 KITLYLNFVEK 98 (345)
T ss_dssp EEECEEEECSS
T ss_pred ceEEEEEEeec
Confidence 688888853
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-12 Score=93.57 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=66.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC
Q 020847 69 SSDGIRSLWIGDLQPWME-----------ESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (320)
Q Consensus 69 ~~~~~~~v~v~nlp~~~t-----------~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g 137 (320)
.+..+++|+|.||-...+ +++|+++|+.||.|.+|.| .+.. ++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999944332 6899999999999999966 5532 799999999999999999999999
Q ss_pred CCCCCCCcceEeeccCCC
Q 020847 138 TQMPSTEQNFRLNWATYG 155 (320)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~ 155 (320)
..+ .++.+.+.++...
T Consensus 87 ~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWF--GGRQITAQAWDGT 102 (112)
T ss_dssp CEE--TTEECEEEECCSC
T ss_pred CEE--CCcEEEEEEeCCC
Confidence 999 5677888877643
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-11 Score=86.84 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=63.1
Q ss_pred CCCCceEEEcCCC-------CCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 70 SDGIRSLWIGDLQ-------PWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 70 ~~~~~~v~v~nlp-------~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
.....+|.|.-.. ..+++++|+++|+.||.|.+|.++. .++|||||+|.+.++|..|++.+++ +
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~-- 77 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--L-- 77 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--C--
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--C--
Confidence 3345677777654 4589999999999999999999883 4799999999999999999987655 3
Q ss_pred CCcceEeeccCCCC
Q 020847 143 TEQNFRLNWATYGA 156 (320)
Q Consensus 143 ~~~~~~~~~~~~~~ 156 (320)
.++.+++.|+....
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 46788888877554
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=1.7e-12 Score=93.15 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHhcccCCeeEEEEEecCCC--CCccCeEEEEEcCHHHHHHHHHHhcCC
Q 020847 71 DGIRSLWIGDL--QPWME--------ESYIASIFGHTGEFVSGKVIRNKQT--NFSEGYGFIEFVSHAAAERVLQTFNGT 138 (320)
Q Consensus 71 ~~~~~v~v~nl--p~~~t--------~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~afv~f~~~~~A~~a~~~l~g~ 138 (320)
.+++.|.|.|+ +.++. +++|++.|++||.|.++.|.++..+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33443 4789999999999999999988654 367999999999999999999999999
Q ss_pred CCCCCCcceEeeccC
Q 020847 139 QMPSTEQNFRLNWAT 153 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (320)
.+ .++.|.+.+..
T Consensus 83 ~f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KF--ANRVVVTKYCD 95 (105)
T ss_dssp EE--TTEECEEEEEC
T ss_pred Ee--CCCEEEEEEeC
Confidence 99 55666666543
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.33 E-value=3.4e-13 Score=96.68 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 78 IGDLQPWMEESYIASIF------------GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 78 v~nlp~~~t~~~l~~~f------------~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
+.||+..+++++|++.| ++||.|.+|.+.++. ++.++|||||+|.+.++|.+|+..|||..+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 56777778888777666 999999999999885 478899999999999999999999999999 455
Q ss_pred ceEeecc
Q 020847 146 NFRLNWA 152 (320)
Q Consensus 146 ~~~~~~~ 152 (320)
.+.+.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 5665553
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=1.8e-12 Score=112.01 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC---CCC
Q 020847 70 SDGIRSLWIGD--LQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP---STE 144 (320)
Q Consensus 70 ~~~~~~v~v~n--lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~---~~~ 144 (320)
+..+++|||+| |++.+|+++|+++|++||.|.++.+.. +||||||+|.+.++|++|++.|||..+. |.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 588999999999999999998887643 4899999999999999999999999873 233
Q ss_pred cceEeeccCCCCCCC-CCCCCCCceEEecCCCCCCCHHHHHHHHHh
Q 020847 145 QNFRLNWATYGAGER-RQDDGPDFTIFVGDLAADVTDYVLQETFRA 189 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 189 (320)
..+.+.+........ .....+....+ +|..+++++-..++..
T Consensus 89 ~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~~ 131 (345)
T 3tht_A 89 ITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLES 131 (345)
T ss_dssp EECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHTT
T ss_pred eEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHHh
Confidence 356566553211000 01111122222 3455677666666654
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=4.7e-12 Score=92.59 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHHhcccCCeeEEEEEecCC----CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 72 GIRSLWIGDLQP--W---MEESYIASIFGHTGEFVSGKVIRNKQ----TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 72 ~~~~v~v~nlp~--~---~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
.++.|+|.|+-. + --+++|++.|++||.|.+|+|+++.. ++.++||+||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 457899999942 2 23789999999999999999999854 356789999999999999999999999999
Q ss_pred CCcceEeecc
Q 020847 143 TEQNFRLNWA 152 (320)
Q Consensus 143 ~~~~~~~~~~ 152 (320)
.++.|.+.+.
T Consensus 97 ~GR~i~v~~~ 106 (118)
T 3ue2_A 97 AGRKVVAEVY 106 (118)
T ss_dssp TTEECEEEEE
T ss_pred CCcEEEEEEc
Confidence 5566666554
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=5.5e-11 Score=80.74 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=62.2
Q ss_pred CCCceEEecCCCC----CCCH----HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 164 GPDFTIFVGDLAA----DVTD----YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 164 ~~~~~l~v~nl~~----~~t~----~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
++..||+|.-.+. .+-. .+|.+.|++ ||.|..+++..++ +||+|.+.++|.+|++ |||..++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4556888877662 2333 678999997 9999999998763 8999999999999997 9999999
Q ss_pred CcceEEccCCcc
Q 020847 236 TRPMRIGPAATK 247 (320)
Q Consensus 236 g~~i~v~~a~~~ 247 (320)
||.|+|..+++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998864
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=2e-10 Score=83.33 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=67.1
Q ss_pred CCCceEEecCCCCC-CCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhc--CcccCCcce
Q 020847 164 GPDFTIFVGDLAAD-VTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGD-ESEQLRSMTEMN--GVLCSTRPM 239 (320)
Q Consensus 164 ~~~~~l~v~nl~~~-~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~~~g~~i 239 (320)
.....|+|+||+.+ +++++|+++|++ ||.|..|.+.++.. .|||+|.+ .++|..|++.|+ +..|.|..+
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 44669999999999 999999999998 99999999987742 59999999 899999999994 688999988
Q ss_pred EEccCCcc
Q 020847 240 RIGPAATK 247 (320)
Q Consensus 240 ~v~~a~~~ 247 (320)
.++...-.
T Consensus 89 ~~evL~Ge 96 (121)
T 1owx_A 89 TWEVLEGE 96 (121)
T ss_dssp EEEECCHH
T ss_pred EEEECCCH
Confidence 88776644
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.12 E-value=2.1e-10 Score=83.23 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCceEEEcCCCCCC----------CHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 72 GIRSLWIGDLQPWM----------EESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 72 ~~~~v~v~nlp~~~----------t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
.++.|.+.|+=... -+++|++.|++||.|.++.+.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f- 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF- 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE-
Confidence 45678888883322 256789999999999999987653 589999999999999999999999999
Q ss_pred CCCcceEeeccC
Q 020847 142 STEQNFRLNWAT 153 (320)
Q Consensus 142 ~~~~~~~~~~~~ 153 (320)
.++.|.+.++.
T Consensus 81 -~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 -AGKMITAAYVP 91 (114)
T ss_dssp -TTEECEEEEEC
T ss_pred -CCEEEEEEEEc
Confidence 55666666543
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=4.7e-10 Score=92.06 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHhhCCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEEccCCcc
Q 020847 178 VTDYVLQETFRAVYSSVKGAKVVTDR----TTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK 247 (320)
Q Consensus 178 ~t~~~l~~~f~~~~g~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~~ 247 (320)
-.+++|++.|++ ||.|.++.|.++. .++.++|++||+|.+.++|.+|++.|||+.++||.|.+.|+...
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 457899999998 9999999998654 34589999999999999999999999999999999999998743
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=3e-10 Score=77.49 Aligned_cols=74 Identities=18% Similarity=0.272 Sum_probs=62.2
Q ss_pred CCCCceEEecCCCCC-----CCH----HHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcc
Q 020847 163 DGPDFTIFVGDLAAD-----VTD----YVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 163 ~~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 233 (320)
.++..||+|.-++.. +-. .+|.+.|.. ||.|..+++..|+ +||+|.+.++|.+|++ |||..
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 356679999888632 222 568899997 9999999999873 9999999999999998 99999
Q ss_pred cCCcceEEccCCc
Q 020847 234 CSTRPMRIGPAAT 246 (320)
Q Consensus 234 ~~g~~i~v~~a~~ 246 (320)
++||.|+|++..+
T Consensus 82 v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 82 VKGRAVKISGPSS 94 (95)
T ss_dssp ETTEEEEEECCCC
T ss_pred eCCeEEEEeccCC
Confidence 9999999987653
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.7e-09 Score=78.46 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=56.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcC-HHHHHHHHHHhc--CCCC
Q 020847 70 SDGIRSLWIGDLQPW-MEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVS-HAAAERVLQTFN--GTQM 140 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~-~~~A~~a~~~l~--g~~~ 140 (320)
-...+.|||+||+.+ +++++|+++|+.||.|..|.+..+. ..|||.|.+ +++|..|+..++ +..|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 345688999999999 9999999999999999999998874 369999999 899999999985 4444
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3e-08 Score=68.86 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=66.5
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhC-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcce
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVY-----SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPM 239 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~-----g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 239 (320)
..++|-+-|||-.+++..|+.+..+ + |.+..+.+..| -+-|+|+|.|...|.+|.-+|+|.+|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3568999999999999999999998 9 99999999887 4469999999999999999999999999999
Q ss_pred EEccC
Q 020847 240 RIGPA 244 (320)
Q Consensus 240 ~v~~a 244 (320)
++.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98644
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.7e-08 Score=67.56 Aligned_cols=70 Identities=14% Similarity=0.269 Sum_probs=55.2
Q ss_pred CceEEEcCCCC----CCCH----HHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 73 IRSLWIGDLQP----WMEE----SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 73 ~~~v~v~nlp~----~~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
..||+|.-.+. +.-. .+|.+.|..||.|..++++.+. +||+|.+.++|.+|++ |||..+ .+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v--~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL--LN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--TT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--CC
Confidence 45677776652 2333 6688999999999999998763 8999999999999996 999999 56
Q ss_pred cceEeeccC
Q 020847 145 QNFRLNWAT 153 (320)
Q Consensus 145 ~~~~~~~~~ 153 (320)
+.+++..++
T Consensus 76 r~LkV~lkt 84 (91)
T 2dnr_A 76 RTITIALKS 84 (91)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEeCC
Confidence 666666554
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.65 E-value=6e-08 Score=79.39 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=55.9
Q ss_pred CCHHHHHHHhcccCCeeEEEEEecCC----CCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCcceEeecc
Q 020847 85 MEESYIASIFGHTGEFVSGKVIRNKQ----TNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWA 152 (320)
Q Consensus 85 ~t~~~l~~~f~~~G~v~~~~~~~~~~----~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~ 152 (320)
-.+++|++.|++||.|.++.++++.. ++.++|++||+|.+.++|.+|+..|||..+ .++.|.+.+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--AGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--CCeEEEEEEc
Confidence 45788999999999999999986643 347899999999999999999999999999 5555665544
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.3e-07 Score=64.56 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCceEEEcCCCCC-----CCH----HHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCC
Q 020847 72 GIRSLWIGDLQPW-----MEE----SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPS 142 (320)
Q Consensus 72 ~~~~v~v~nlp~~-----~t~----~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~ 142 (320)
...||+|.-++.+ +-. .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |||..+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v-- 82 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV-- 82 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE--
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee--
Confidence 4467889887643 222 5588899999999999998873 9999999999999997 999999
Q ss_pred CCcceEeec
Q 020847 143 TEQNFRLNW 151 (320)
Q Consensus 143 ~~~~~~~~~ 151 (320)
.++.+++.+
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 556666654
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=9.5e-06 Score=56.01 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhh----CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAV----YSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~----~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
...+|.|.|||..++++.|.-+|++. .|.|+++.... +-|+|+|.+.+.|++.++ -..+.+.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEEE
Confidence 34599999999999999999999872 35688777642 468999999999999985 247889999999
Q ss_pred EccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcCC
Q 020847 241 IGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVT 287 (320)
Q Consensus 241 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 287 (320)
|....+. ...+|++.||++.++
T Consensus 78 V~P~~~~-------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR-------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC-------------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC-------------------------CcceEeeecCCCCCC
Confidence 9775544 346688888887664
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=9.5e-06 Score=56.44 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=60.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHT-----GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
.+..++|-+-|||..++...|+.+.+.+ |.+.++.+..| .+=|+|+|.+...|.+|.=.|+|..|.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeec
Confidence 3457889999999999999999999999 99999999887 456999999999999999999999995
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=0.00011 Score=50.79 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=64.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc---c--CCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGH---T--GEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTE 144 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~---~--G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~ 144 (320)
....++|.|.|||.++.++.|.-+|+. - |+|.++.... +-|+|+|.+.+.|++.++. ....+.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~-- 73 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG-- 73 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS--
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC--
Confidence 345688999999999999999999976 2 4687777643 4699999999999999943 2344433
Q ss_pred cceEeeccCCCCCCCCCCCCCCceEEecCCCCCCC
Q 020847 145 QNFRLNWATYGAGERRQDDGPDFTIFVGDLAADVT 179 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t 179 (320)
..+.+...... ...+|++.+|++.++
T Consensus 74 ~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 AQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp SBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred eEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 33444332211 234899999998875
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=1.4e-05 Score=55.47 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=63.3
Q ss_pred CceEEecCCCCCC-C----HHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceE
Q 020847 166 DFTIFVGDLAADV-T----DYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMR 240 (320)
Q Consensus 166 ~~~l~v~nl~~~~-t----~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 240 (320)
.++|+|.||+.++ . .+.++++|.. |+.+.....++.- | -..|.|.+.++|.+|...||+..+.|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3589999998865 3 2577899997 9998888777653 2 578999999999999999999999999999
Q ss_pred EccCCcc
Q 020847 241 IGPAATK 247 (320)
Q Consensus 241 v~~a~~~ 247 (320)
|.|+.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999844
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.72 E-value=0.00026 Score=48.26 Aligned_cols=54 Identities=13% Similarity=0.255 Sum_probs=46.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
..++| ++|+.+...||.++|+. ||.|. |..+-|. -|||.|.+++.|..|++.+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999998 99665 7777764 79999999999999998764
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00029 Score=47.98 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 136 (320)
...+.++| +.|.++...||.++|+.||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34455666 999999999999999999966 6776665 379999999999999998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.00022 Score=48.58 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=56.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGR--SKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
.+|.|++||+.+|++++.+.+.. ...+.....+..+.+.. .-..|||.|.+.+++..-.+.++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 37999999999999999999997 88887777666543322 2357999999999999999999998874
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.50 E-value=0.00038 Score=47.42 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=55.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCC--CccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTN--FSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~--~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
++|.|++||+.+||+++.+.+..+..+.....+....+. ....-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999998877666665543222 23457999999999999999999999874
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.38 E-value=0.0002 Score=48.94 Aligned_cols=53 Identities=13% Similarity=0.257 Sum_probs=45.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 020847 168 TIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMN 230 (320)
Q Consensus 168 ~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 230 (320)
.++| ++|+.+...||..+|+. ||.|. |..+-|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~-fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSA-FGNIQ-ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTT-SEEEE-EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhc-cCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 5566 99999999999999998 99554 7777764 79999999999999998764
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.00056 Score=47.42 Aligned_cols=75 Identities=13% Similarity=0.092 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCCCC-C----HHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCCCCCc
Q 020847 71 DGIRSLWIGDLQPWM-E----ESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMPSTEQ 145 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~-t----~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~~~~~ 145 (320)
....+|+|.||+.++ + .+.++++|..|+++......++ -+-..|.|.+.++|.+|...|++..+. +.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~--g~ 74 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFL--GK 74 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEET--TE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceec--Cc
Confidence 345789999998866 2 2567899999999988888775 345789999999999999999999994 44
Q ss_pred ceEeeccC
Q 020847 146 NFRLNWAT 153 (320)
Q Consensus 146 ~~~~~~~~ 153 (320)
.+++-++.
T Consensus 75 ~~r~YFgq 82 (104)
T 1wey_A 75 EMKLYFAQ 82 (104)
T ss_dssp ECEEECCC
T ss_pred eeEEEecC
Confidence 66666655
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.32 E-value=0.00032 Score=47.94 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=45.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhc
Q 020847 74 RSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFN 136 (320)
Q Consensus 74 ~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~ 136 (320)
+.++| +.|.++...||.++|+.||.| .|..+.| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 44566 999999999999999999955 6776665 379999999999999998764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0017 Score=46.41 Aligned_cols=74 Identities=11% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCC-cceEEcc
Q 020847 165 PDFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCST-RPMRIGP 243 (320)
Q Consensus 165 ~~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~~ 243 (320)
..+.|.|-+.|... ...|.+.|++ ||.|.+.... . ....-.|.|.++.+|.+||. .||..++| -.|-|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35689999999985 5667788897 9999988751 1 24589999999999999995 69999974 5677777
Q ss_pred CCcc
Q 020847 244 AATK 247 (320)
Q Consensus 244 a~~~ 247 (320)
...+
T Consensus 94 ~~d~ 97 (119)
T 1wwh_A 94 CIDK 97 (119)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6543
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.76 E-value=0.0012 Score=45.28 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=50.2
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCC-C-cceEEEEEeCCHHHHHHHHHHhcCcccC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTG-R-SKGYGFVRFGDESEQLRSMTEMNGVLCS 235 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~-~-~~g~afV~f~~~~~A~~A~~~l~g~~~~ 235 (320)
+-+|.|+.||+.+|++++.+.++. .-.+.....+..+.+. . .-..|||.|.+.++...-.+..+|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRP-LPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSC-CSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCC-cCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 458999999999999998888876 4444333322221111 1 1246899999999999999999998874
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.63 E-value=0.0055 Score=43.69 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=52.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 70 SDGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 70 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
....+-|.|-|.|.+. ...|...|+.||.|.+.... ....+-.|.|.+..+|++|| ..||..+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEec
Confidence 3456789999999985 67778899999999887751 13679999999999999999 66998874
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.37 E-value=0.0031 Score=43.18 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=50.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCC--CCccCeEEEEEcCHHHHHHHHHHhcCCCCC
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQT--NFSEGYGFIEFVSHAAAERVLQTFNGTQMP 141 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~--~~~~g~afv~f~~~~~A~~a~~~l~g~~~~ 141 (320)
+-+|.|+.||+++||+++.+.+..+-.+.....+....+ .....-|||.|.+.++.....+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 457999999999999999988876654432222221111 112356899999999999999999998873
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.33 E-value=0.0017 Score=58.02 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=43.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHH
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQ 133 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~ 133 (320)
..++|+|. .+..+++.+|.++|.+||+|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 35779998 79999999999999999999999988762 4699999999999997773
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.54 E-value=0.008 Score=53.77 Aligned_cols=54 Identities=7% Similarity=0.115 Sum_probs=41.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
+.|+|. .+..+++.+|.++|++ ||.|.++...++. .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 589997 7999999999999997 9999999877653 3699999999999887764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.88 E-value=0.028 Score=40.64 Aligned_cols=78 Identities=9% Similarity=0.241 Sum_probs=54.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEE-EEEecC--------CCC-----CcceEEEEEeCCHHHHHHHHHHhcCc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGA-KVVTDR--------TTG-----RSKGYGFVRFGDESEQLRSMTEMNGV 232 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v-~i~~~~--------~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~ 232 (320)
..|.|-+.|...+.. |.+.|++ ||.|.+- ...++. ... .......|+|++..+|.+||. -||.
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred eEEEEEecCHHHHHH-HHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 367788887776654 6677887 9998762 111100 000 124577999999999999995 6999
Q ss_pred ccCCcceEEccCCcc
Q 020847 233 LCSTRPMRIGPAATK 247 (320)
Q Consensus 233 ~~~g~~i~v~~a~~~ 247 (320)
.++|..|=|.+.++.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998888887643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.14 E-value=0.12 Score=37.39 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=44.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEEecC--------CC----C-CccCeEEEEEcCHHHHHHHHHHhcCC
Q 020847 73 IRSLWIGDLQPWMEESYIASIFGHTGEFVS-GKVIRNK--------QT----N-FSEGYGFIEFVSHAAAERVLQTFNGT 138 (320)
Q Consensus 73 ~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~-~~~~~~~--------~~----~-~~~g~afv~f~~~~~A~~a~~~l~g~ 138 (320)
...|.|-|.|.+.+ ..+-+.|++||.|.+ ....++. .. + ....+..|.|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 35677888866654 556678999998765 2111100 00 0 13568899999999999999 67888
Q ss_pred CCC
Q 020847 139 QMP 141 (320)
Q Consensus 139 ~~~ 141 (320)
.+.
T Consensus 85 ii~ 87 (132)
T 3p3d_A 85 VFN 87 (132)
T ss_dssp EET
T ss_pred EeC
Confidence 874
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.10 E-value=0.85 Score=41.52 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=46.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC
Q 020847 72 GIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g 137 (320)
....++|+ +|..+...+|.++|+.||.+ +|+.+. ...|||.|.+.+.|..+++.+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 34566666 99999999999999999965 666553 34799999999999999988853
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.75 E-value=0.74 Score=41.94 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=45.0
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
...++|+ ++..+...+|.++|+. ||.+ +|+++.+ ..|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3466665 9999999999999997 9954 4665544 2799999999999999998853
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.59 E-value=16 Score=23.21 Aligned_cols=68 Identities=6% Similarity=0.135 Sum_probs=41.4
Q ss_pred eEEecCC-CCCCCHHHHHHHHHhhCCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcCcccCCcceEE
Q 020847 168 TIFVGDL-AADVTDYVLQETFRAVYSS-----VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRI 241 (320)
Q Consensus 168 ~l~v~nl-~~~~t~~~l~~~f~~~~g~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 241 (320)
+|+|..= ...++..+|..++.. -+. |-.+.+. ..|.||+-... .|..+++.|++..+.|+.++|
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~-~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAK-IDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHT-STTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHH-ccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEE
Confidence 4555322 234677788888876 444 3444442 22789988765 678889999999999999998
Q ss_pred ccCC
Q 020847 242 GPAA 245 (320)
Q Consensus 242 ~~a~ 245 (320)
+.++
T Consensus 72 ~~~~ 75 (76)
T 2g0c_A 72 NKAN 75 (76)
T ss_dssp EECC
T ss_pred EECC
Confidence 7664
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=51.83 E-value=54 Score=22.34 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEe----cCCCCCcceEEEEEeCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~----~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
...+..+|++.+.+.|+.-.++.++. ..-.|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67788999999988777633332222 2223445555544 555555444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=51.34 E-value=49 Score=21.75 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=42.9
Q ss_pred CceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 020847 166 DFTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNG 231 (320)
Q Consensus 166 ~~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 231 (320)
++-|-|-|+|..+-..++.-...- .|---.+..+ .|.|++.|.+.++-..|+..|-+
T Consensus 12 nclikiinipqgtlkaevvlavrh-lgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRH-LGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHT-TCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehh-cCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 446778899999998888777763 6654445432 45799999999999999987643
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=49.02 E-value=57 Score=22.27 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEE----EecCCCCCcceEEEEEeCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKV----VTDRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
...+..+|++.+.+.|+.-.++.+ .+..-.|++.|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 677889999988886766333222 222223455566644 566665544
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.69 E-value=38 Score=25.63 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=31.4
Q ss_pred cEEEEcCCCC-c--------CCHHHHHHHh--ccCCCEEEEEecC--C-ccEEEEEeec
Q 020847 275 TTIFVGGLDP-S--------VTDDILKTVF--GQYGELVHVKIPA--G-KRCGFVQFAN 319 (320)
Q Consensus 275 ~~l~v~nl~~-~--------~~~~~L~~~f--~~~G~i~~v~i~~--~-~~~afV~F~~ 319 (320)
-.+.|-|++. . ...++|++.| +.|.++.-.-+-- + +|++.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecC
Confidence 3466778776 2 3458999977 9998776444422 2 5789999975
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.59 E-value=14 Score=22.87 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.6
Q ss_pred CCEEEEEecCCccEEEEEeec
Q 020847 299 GELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 299 G~i~~v~i~~~~~~afV~F~~ 319 (320)
|.|..|. ..++.|+|.|.+
T Consensus 28 GtV~kV~--~~~~~ClV~FeD 46 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFED 46 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred eEEEEEe--cCCcEEEEEEcc
Confidence 6776665 567899999986
No 409
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=45.46 E-value=24 Score=25.88 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEecC--C--CCCcceEEEEEeCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVTDR--T--TGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~~~--~--~~~~~g~afV~f~~~~~A~~ 224 (320)
...+..||++.+...|+.-.++.++... . .|.+.|||.| |++.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 4678899999998877764444333321 2 2445556655 666666554
No 410
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=42.26 E-value=18 Score=22.49 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=14.1
Q ss_pred CCEEEEEecCCccEEEEEeec
Q 020847 299 GELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 299 G~i~~v~i~~~~~~afV~F~~ 319 (320)
|.|..|. ..++.|+|.|.+
T Consensus 32 gtI~~V~--~~~gtC~V~F~D 50 (66)
T 2eqj_A 32 GTIKKIN--ILKQSCFIIFED 50 (66)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred eEEEEEc--cCCcEEEEEEcc
Confidence 5665554 667999999976
No 411
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=41.86 E-value=19 Score=23.00 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.6
Q ss_pred CCEEEEEecCCccEEEEEeec
Q 020847 299 GELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 299 G~i~~v~i~~~~~~afV~F~~ 319 (320)
|.|..|. ..++.|+|.|.+
T Consensus 45 GTI~kV~--~~~e~ClV~F~D 63 (79)
T 2m0o_A 45 GTIKKVD--SAREVCLVQFED 63 (79)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred EEEEEec--cCCCEEEEEEcC
Confidence 7776555 567899999986
No 412
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.97 E-value=49 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=33.3
Q ss_pred EEEcCCCCC---------CCHHHHHHHh--cccCCeeEEEEEecCCCCCccCeEEEEEcCH
Q 020847 76 LWIGDLQPW---------MEESYIASIF--GHTGEFVSGKVIRNKQTNFSEGYGFIEFVSH 125 (320)
Q Consensus 76 v~v~nlp~~---------~t~~~l~~~f--~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~ 125 (320)
+.|-|++.. ....+|++.| +.|.++ +++.+.+.. | ..|+|.|.|.+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~-G-h~g~aIv~F~~d 72 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYL-G-HSGTAIVEFNKD 72 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSS-B-EEEEEEEECCSS
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCC-C-CceeEEEEecCC
Confidence 566777762 3457889977 999987 566666532 2 688999999864
No 413
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=37.21 E-value=1.1e+02 Score=21.93 Aligned_cols=48 Identities=31% Similarity=0.479 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEe----cCCCCCcceEEEEEeCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~----~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
...+..||++-+...|+.-.++.++. ..-.|.+.|||.| |++.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46889999999988787643333322 2223455566655 666666554
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.68 E-value=62 Score=21.42 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=27.7
Q ss_pred CHHHHHHHhcc----cC-CeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHH
Q 020847 86 EESYIASIFGH----TG-EFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQT 134 (320)
Q Consensus 86 t~~~l~~~f~~----~G-~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~ 134 (320)
.|..+.+.++. .| .+.++.+... -.||.||++...++...+++.
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASES-----LKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECTT-----STTEEEEEESSHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEecc-----cCCEEEEEEecchhHHHHHHC
Confidence 45555554432 23 2445544322 689999999999888887744
No 415
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=35.67 E-value=28 Score=20.88 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=14.1
Q ss_pred CCEEEEEecCCccEEEEEeec
Q 020847 299 GELVHVKIPAGKRCGFVQFAN 319 (320)
Q Consensus 299 G~i~~v~i~~~~~~afV~F~~ 319 (320)
|.|..|. ..++.|+|.|.+
T Consensus 22 GtI~~V~--~~~~~clV~F~D 40 (58)
T 4hcz_A 22 GTIKKVD--SAREVCLVQFED 40 (58)
T ss_dssp EEEEEEE--TTTTEEEEEETT
T ss_pred EEEEEEe--cCCCEEEEEEcC
Confidence 6676554 566799999976
No 416
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=29.80 E-value=27 Score=17.72 Aligned_cols=18 Identities=17% Similarity=0.608 Sum_probs=11.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHh
Q 020847 72 GIRSLWIGDLQPWMEESYIASIF 94 (320)
Q Consensus 72 ~~~~v~v~nlp~~~t~~~l~~~f 94 (320)
..++||||+- .++|+++-
T Consensus 4 qvrtiwvggt-----peelkklk 21 (36)
T 2ki0_A 4 QVRTIWVGGT-----PEELKKLK 21 (36)
T ss_dssp SCCCCCBCCC-----HHHHHHHH
T ss_pred eeEEEEecCC-----HHHHHHHH
Confidence 4578899875 45666554
No 417
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=35.18 E-value=12 Score=25.94 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=35.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHhhCCCeeEEEEEecCCCCCcceEE--EEEeCCHHHHHHHHHHhcCcc
Q 020847 167 FTIFVGDLAADVTDYVLQETFRAVYSSVKGAKVVTDRTTGRSKGYG--FVRFGDESEQLRSMTEMNGVL 233 (320)
Q Consensus 167 ~~l~v~nl~~~~t~~~l~~~f~~~~g~i~~v~i~~~~~~~~~~g~a--fV~f~~~~~A~~A~~~l~g~~ 233 (320)
.+|-|... .++++|..+..+ .+ +..+.+.+...+|+.. |. +=.|.+.++|.+|+..|-...
T Consensus 26 YTLQL~a~---~~~~~l~~f~~~-~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWAKK-EN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 35555433 445667777765 54 4445555433234332 33 335999999999998876543
No 418
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=27.33 E-value=1.6e+02 Score=20.48 Aligned_cols=66 Identities=14% Similarity=0.267 Sum_probs=40.8
Q ss_pred EEEEcCHHHHHHHHHHhcCCCCCCCCcceEeeccCCCCCCCCCCCCCCceEEec----CCCC--CCCHHHHHHHHHhhCC
Q 020847 119 FIEFVSHAAAERVLQTFNGTQMPSTEQNFRLNWATYGAGERRQDDGPDFTIFVG----DLAA--DVTDYVLQETFRAVYS 192 (320)
Q Consensus 119 fv~f~~~~~A~~a~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~----nl~~--~~t~~~l~~~f~~~~g 192 (320)
||.+--+++...++..|-|..++-.+..+.+.... .++|- .||. -.+.+||.++|++ |
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~~GD--------------~alv~~L~~Rl~EG~vl~~eEi~k~~e~--g 104 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKED--------------KLYVVQISQRLEEGKILTLEEILKLYES--G 104 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBCTTC--------------EEEEEEEC-------CCCHHHHHHHHHH--T
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEecCCC--------------EEEEEEecccCCCCccCCHHHHHHHHHc--C
Confidence 55555678888888899888876444444443322 33332 3443 2467999999986 7
Q ss_pred CeeEEEEE
Q 020847 193 SVKGAKVV 200 (320)
Q Consensus 193 ~i~~v~i~ 200 (320)
.|...++.
T Consensus 105 ~i~~~~~~ 112 (114)
T 2x4i_A 105 KVQFFEII 112 (114)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEEe
Confidence 87766654
No 419
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.11 E-value=89 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.|++|++..-...|+-+++|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766678899999999975
No 420
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=26.81 E-value=80 Score=20.17 Aligned_cols=60 Identities=8% Similarity=0.125 Sum_probs=36.2
Q ss_pred eEEEEEeCCHHHHHHHHHH---hcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcC
Q 020847 210 GYGFVRFGDESEQLRSMTE---MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV 286 (320)
Q Consensus 210 g~afV~f~~~~~A~~A~~~---l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 286 (320)
-|.++.|....++.+-++. ++...+. .+.|...+++ ..-++|| |.+++
T Consensus 6 ~Yvl~~~~a~~~~i~Eler~~rine~VlR--~l~vr~d~~r-------------------------~YE~m~I--l~P~l 56 (77)
T 3zzp_A 6 YTTWYQVEMPEDRVNDLARELRIRDNVRR--VMVVASTTPG-------------------------RYEVNIV--LNPNL 56 (77)
T ss_dssp TEEEEEEECCHHHHHHHHHHHHTSTTEEE--EEEEECSSTT-------------------------EEEEEEE--ECTTC
T ss_pred EEEEEEEEeCHhHHHHHHHHhCCCHHHHH--HHHHhccCCC-------------------------ceEEEEE--ECCCC
Confidence 3889999887666665543 3333342 2222222211 1245777 78889
Q ss_pred CHHHHHHHhccC
Q 020847 287 TDDILKTVFGQY 298 (320)
Q Consensus 287 ~~~~L~~~f~~~ 298 (320)
+++.++...++|
T Consensus 57 ~ee~~~~~vek~ 68 (77)
T 3zzp_A 57 DQSQLQNEKEII 68 (77)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 998888887765
No 421
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=26.38 E-value=1e+02 Score=18.07 Aligned_cols=42 Identities=7% Similarity=0.174 Sum_probs=28.7
Q ss_pred EEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEe
Q 020847 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQF 317 (320)
Q Consensus 276 ~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F 317 (320)
++.|.|+.-.--...|...+.....|..+.+.-..+.+.|.|
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~ 46 (69)
T 4a4j_A 5 NLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSY 46 (69)
T ss_dssp EEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEE
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEE
Confidence 466677766555677777777776777777766666666766
No 422
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=25.75 E-value=1.1e+02 Score=18.29 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=28.1
Q ss_pred cEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEee
Q 020847 275 TTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (320)
Q Consensus 275 ~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~ 318 (320)
.++.|.|+.-.-=...|...+.....|.++.+....+.+.|.|+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~ 47 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFD 47 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEEC
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEEC
Confidence 34666666665555667777777666766666555566666664
No 423
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.72 E-value=59 Score=21.87 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=42.6
Q ss_pred eEEEEEeCCHHHHHHHHHH---hcCcccCCcceEEccCCcccccchhhhhcccccCCCCCCCCCCCCccEEEEcCCCCcC
Q 020847 210 GYGFVRFGDESEQLRSMTE---MNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSV 286 (320)
Q Consensus 210 g~afV~f~~~~~A~~A~~~---l~g~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 286 (320)
-|+++.|....++.+-++. ++.-.+.--.++|+. ....-++|| |.+++
T Consensus 6 ~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~---------------------------Mr~YE~m~I--l~P~l 56 (96)
T 2kjw_A 6 YFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT---------------------------PGRYEVNIV--LNPNL 56 (96)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS---------------------------SSCEEEEEE--CCSSC
T ss_pred EEEEEEeecChhHHHHHHHHhccchhhhhhhheehhh---------------------------hhhhheeee--eCCCC
Confidence 3789999988887776653 455555444444432 012356777 88889
Q ss_pred CHHHHHHHhccC--------CCEEEEE
Q 020847 287 TDDILKTVFGQY--------GELVHVK 305 (320)
Q Consensus 287 ~~~~L~~~f~~~--------G~i~~v~ 305 (320)
+++++....+.| |.|..+.
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~ve 83 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKVE 83 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCCE
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 888887666655 5666554
No 424
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.22 E-value=1.7e+02 Score=20.12 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhhCCCeeEEEEEe----cCCCCCcceEEEEEeCCHHHHHH
Q 020847 176 ADVTDYVLQETFRAVYSSVKGAKVVT----DRTTGRSKGYGFVRFGDESEQLR 224 (320)
Q Consensus 176 ~~~t~~~l~~~f~~~~g~i~~v~i~~----~~~~~~~~g~afV~f~~~~~A~~ 224 (320)
...+..||++.+.+.|+.-.++.++. ..-.|.+.|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788999998888777633333322 2223455666654 666666554
No 425
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.46 E-value=1.5e+02 Score=19.36 Aligned_cols=55 Identities=9% Similarity=0.159 Sum_probs=39.7
Q ss_pred EecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 020847 170 FVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMT 227 (320)
Q Consensus 170 ~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 227 (320)
++-.++...+..+|++.+++.|+. |..|..+.-+ .| ..-|+|.+..-.+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHHH
Confidence 334567889999999999998874 7777766543 22 3469999988777766543
No 426
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.20 E-value=1.4e+02 Score=19.44 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=38.3
Q ss_pred EecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 170 FVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 170 ~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
++=.++...+..+|++.+++.|+. |..|..+.-+ . ...-|+|++..-.+|....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~--~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-D--GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-T--SSEEEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-C--CceEEEEEECCCCcHHHHH
Confidence 344567899999999999988874 7777766543 1 2346999998776655443
No 427
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.68 E-value=30 Score=25.44 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=16.6
Q ss_pred HHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEc
Q 020847 88 SYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFV 123 (320)
Q Consensus 88 ~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~ 123 (320)
+|+.++|...|.|. ...+ .+||+||...
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 45667788777543 3333 4899999865
No 428
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=23.35 E-value=1.6e+02 Score=19.27 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=46.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcccCCeeEEEEEecCCCCCccCeEEEEEcCHHHHHHHHHHhcC
Q 020847 71 DGIRSLWIGDLQPWMEESYIASIFGHTGEFVSGKVIRNKQTNFSEGYGFIEFVSHAAAERVLQTFNG 137 (320)
Q Consensus 71 ~~~~~v~v~nlp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~A~~a~~~l~g 137 (320)
...|-|.|-|+|..+-..++.-..+..|---.|..+ .|-|.+.|.+.++-..|+..|-.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 456889999999999988888777877754445443 46799999999999999987643
No 429
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.73 E-value=1.3e+02 Score=18.03 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=31.9
Q ss_pred ccEEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEee
Q 020847 274 NTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (320)
Q Consensus 274 ~~~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~ 318 (320)
..++.|.++.-.-=...|...+.. ..|..+.+.-..+.+.|.|.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~ 49 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE 49 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC
Confidence 356778888776667778888877 77887777666666666653
No 430
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.73 E-value=1.2e+02 Score=20.64 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.2
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.|++|++..-...|+-+++|=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887765568899999999975
No 431
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=22.57 E-value=29 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=12.3
Q ss_pred CCEEEEEecCCccEEEEEeecC
Q 020847 299 GELVHVKIPAGKRCGFVQFANR 320 (320)
Q Consensus 299 G~i~~v~i~~~~~~afV~F~~~ 320 (320)
|+| |...+..|+|.|.+.
T Consensus 34 GtI----Vd~~~~~ClV~FeD~ 51 (69)
T 2xk0_A 34 GTI----IDQTSDQYLIRFDDQ 51 (69)
T ss_dssp EEE----EEECSSCEEEEETTC
T ss_pred EEE----EecCCceEEEEecCC
Confidence 666 234478899998763
No 432
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.56 E-value=1.8e+02 Score=21.12 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=39.2
Q ss_pred EEecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 169 IFVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 169 l~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
-++--++...+..+|++.++..|+. |..|..+.-+ .| ..-|||.+....+|...-
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g--~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NG--TKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TS--CEEEEEEECTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--ceEEEEEeCCCCcHHHHH
Confidence 3444567889999999999988874 7777766543 22 335999998777766543
No 433
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.41 E-value=1.2e+02 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=21.1
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCC
Q 020847 193 SVKGAKVVTDRTTGRSKGYGFVRFGD 218 (320)
Q Consensus 193 ~i~~v~i~~~~~~~~~~g~afV~f~~ 218 (320)
.|++|++..-...|+.+++|=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788887765678899999999975
No 434
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.19 E-value=1.9e+02 Score=21.21 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=38.6
Q ss_pred EecCCCCCCCHHHHHHHHHhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 020847 170 FVGDLAADVTDYVLQETFRAVYSS-VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSM 226 (320)
Q Consensus 170 ~v~nl~~~~t~~~l~~~f~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 226 (320)
++--++...+..+|+..++..|+. |..|..+.-+ .| ..-|||.+....+|...-
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g--~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TG--NKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--CEEEEEEECSSSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CC--cEEEEEEcCCCCcHHHHH
Confidence 344567889999999999988874 7777766543 22 335999998777766543
No 435
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.92 E-value=42 Score=16.01 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=9.9
Q ss_pred CHHHHHHHhccC
Q 020847 287 TDDILKTVFGQY 298 (320)
Q Consensus 287 ~~~~L~~~f~~~ 298 (320)
++.+|+++.+.|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 578899988877
No 436
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=20.04 E-value=1.3e+02 Score=16.97 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=29.1
Q ss_pred EEEEcCCCCcCCHHHHHHHhccCCCEEEEEecCCccEEEEEee
Q 020847 276 TIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFA 318 (320)
Q Consensus 276 ~l~v~nl~~~~~~~~L~~~f~~~G~i~~v~i~~~~~~afV~F~ 318 (320)
++.|.|+.-.--...|...+.....|..+.+....+.+.|.|.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~ 46 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFD 46 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEEC
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEEC
Confidence 3556666655555677777777767777777666677777664
Done!