BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020848
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 316 bits (810), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 157/285 (55%), Positives = 199/285 (69%), Gaps = 2/285 (0%)
Query: 19 EVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCM 78
+VQ TLLSIKTG C EDC YCPQSSRY TG++ ++LM + V+++A+KAK AGSTRFCM
Sbjct: 62 QVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCM 121
Query: 79 GAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138
GAAW++ R + + + V+ ++ MG+E C TLG L + QA L AGL YNHNLDT
Sbjct: 122 GAAWKNPHERDMPY--LEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT 179
Query: 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXX 198
S EFY IITTR+Y ERL+TL+ VR+AGI VCSGGI+GLGE +DR G
Sbjct: 180 SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPP 239
Query: 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALC 258
ESVPIN L+ VKGTPL D V+ ++ IR IA ARI+MP + VRLSAGR + + QA+C
Sbjct: 240 ESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC 299
Query: 259 FLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGE 303
F+AGANSIF G KLLTTPN + D D +F+ LGL P+ + G+
Sbjct: 300 FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGD 344
>pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde
From Thermotoga Maritima In Complex With Thiocyanate
Length = 348
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 12/212 (5%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92
C ++C YC R D + MT + +++ A+ A + G+ + + G +
Sbjct: 63 CRKNCLYC--GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQS------GEDPYY 114
Query: 93 --NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITT 149
+ I + VK+I+ MG+ V +LG + + K+AG Y +T+ + K+
Sbjct: 115 MPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPD 174
Query: 150 RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAV 209
S++ RL L ++E G +G ++GL + + V I +
Sbjct: 175 TSFENRLNXLLTLKELGYETGAGSMVGL-PGQTIDDLVDDLLFLKEHDFDMVGIGPFIPH 233
Query: 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMV 241
TPL ++K + ++M+A RI++P + +
Sbjct: 234 PDTPLANEKKGDFTLTLKMVALTRILLPDSNI 265
>pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With S-Adenosyl-L-Methionine
Length = 348
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 8/210 (3%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92
C ++C YC R D + MT + +++ A+ A + G+ + + D
Sbjct: 63 CRKNCLYC--GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSG-EDPYXMPDVI 119
Query: 93 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITTRS 151
+ I VK+I+ MG+ V +LG + + K+AG Y +T+ + K+ S
Sbjct: 120 SDI---VKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTS 176
Query: 152 YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKG 211
++ RL L ++E G +G ++GL + + V I +
Sbjct: 177 FENRLNXLLTLKELGYETGAGSMVGL-PGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPD 235
Query: 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMV 241
TPL ++K + ++M+A RI++P + +
Sbjct: 236 TPLANEKKGDFTLTLKMVALTRILLPDSNI 265
>pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
From Thermotoga Maritima
pdb|3IIX|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With Methionine And
5'deoxyadenosine
Length = 348
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 8/210 (3%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92
C ++C YC R D + MT + +++ A+ A + G+ + + D
Sbjct: 63 CRKNCLYC--GLRRDNKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSG-EDPYXMPDVI 119
Query: 93 NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE-FYSKIITTRS 151
+ I VK+I+ MG+ V +LG + + K+AG Y +T+ + K+ S
Sbjct: 120 SDI---VKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTS 176
Query: 152 YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPINALLAVKG 211
++ RL L ++E G +G ++GL + + V I +
Sbjct: 177 FENRLNXLLTLKELGYETGAGSMVGL-PGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPD 235
Query: 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMV 241
TPL ++K + ++M+A RI++P + +
Sbjct: 236 TPLANEKKGDFTLTLKMVALTRILLPDSNI 265
>pdb|3T7V|A Chain A, Crystal Structure Of Methylornithine Synthase (Pylb)
Length = 350
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 96/217 (44%), Gaps = 21/217 (9%)
Query: 33 CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNF 92
C CS+C + R + + +T + + + + K AG F M T+G +
Sbjct: 71 CKNQCSFCYYNCRNEIN---RYRLTMEEIKETCKTLKGAG---FHMVDL---TMGEDPYY 121
Query: 93 ----NQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG---LTAYNHNLDTSREFYS 144
N+ +E V+ +++ +G+ + + G+++ ++ ++ G L Y DT E Y
Sbjct: 122 YEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDT--ELYR 179
Query: 145 KIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGXXXXXXXXXXXXESVPIN 204
K+ +S+D R+ + ++ G V G + G+G E + + V +
Sbjct: 180 KLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTI--LSLRGMSTNDPDMVRVM 237
Query: 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV 241
L +GTPL+ + +++I+ R++ PK ++
Sbjct: 238 TFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLI 274
>pdb|1YIX|A Chain A, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
pdb|1YIX|B Chain B, Crystal Structure Of Ycfh, Tatd Homolog From Escherichia
Coli K12, At 1.9 A Resolution
Length = 265
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 71 AGSTRFCMGAA--------WRDTIGRKTN---------FNQILEY-VKDIRDMGMEV-CC 111
A +FC+ A RD +G + N NQ Y V+D+R + E
Sbjct: 31 ARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVV 90
Query: 112 TLGM--LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 169
LG L+ + E K ++ H++ RE +K + + D R +TL +RE +
Sbjct: 91 ALGETGLDYYYTPETKVRQQESFIHHIQIGREL-NKPVIVHTRDARADTLAILREEKVTD 149
Query: 170 CSGGIIGLGEAEE 182
C G + E E
Sbjct: 150 CGGVLHCFTEDRE 162
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 30 TGGCSEDCSYC-PQSSRYDTGV--KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAA----W 82
T C+ C YC P+ D V +L+T D + + A+ E G + +
Sbjct: 21 TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR 80
Query: 83 RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 142
RD NQI I D+G+ T G+L K +L AGL N +LD +
Sbjct: 81 RDLDVLIAKLNQI----DGIEDIGL---TTNGLLLKKHGQKLYDAGLRRINVSLDAIDDT 133
Query: 143 YSKIITTRSYDER--LETLKHVREAGINVCSGGIIGLG 178
+ I R+ LE + + G+NV +I G
Sbjct: 134 LFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG 171
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 16/158 (10%)
Query: 30 TGGCSEDCSYC-PQSSRYDTGV--KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAA----W 82
T C+ C YC P+ D V +L+T D + + A+ E G + +
Sbjct: 21 TDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMR 80
Query: 83 RDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREF 142
RD NQI I D+G+ T G+L K +L AGL N +LD +
Sbjct: 81 RDLDVLIAKLNQI----DGIEDIGL---TTNGLLLKKHGQKLYDAGLRRINVSLDAIDDT 133
Query: 143 YSKIITTRSYDER--LETLKHVREAGINVCSGGIIGLG 178
+ I R+ LE + + G+NV +I G
Sbjct: 134 LFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKG 171
>pdb|2PI2|A Chain A, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|B Chain B, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|C Chain C, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2PI2|D Chain D, Full-Length Replication Protein A Subunits Rpa14 And Rpa32
pdb|2Z6K|A Chain A, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
pdb|2Z6K|B Chain B, Crystal Structure Of Full-Length Human Rpa1432 HETERODIMER
Length = 270
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGAN 264
+L+A K PL+D E I + A +V+ KA + SAGR S P + G N
Sbjct: 140 SLVAFKIMPLEDMN--EFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAGNFGGN 197
Query: 265 SIFTGEKLLTTPN 277
S L N
Sbjct: 198 SFMPANGLTVAQN 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,122,093
Number of Sequences: 62578
Number of extensions: 299213
Number of successful extensions: 594
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)