Query 020848
Match_columns 320
No_of_seqs 245 out of 2958
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:38:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02389 biotin synthase 100.0 7.1E-57 1.5E-61 409.8 34.5 312 8-319 67-379 (379)
2 COG0502 BioB Biotin synthase a 100.0 2.1E-53 4.7E-58 372.9 29.9 289 7-299 35-324 (335)
3 PRK15108 biotin synthase; Prov 100.0 5.7E-53 1.2E-57 382.1 33.3 297 8-306 27-324 (345)
4 KOG2900 Biotin synthase [Coenz 100.0 1.2E-51 2.6E-56 339.5 18.1 311 6-319 67-379 (380)
5 PRK08508 biotin synthase; Prov 100.0 5.6E-47 1.2E-51 334.5 31.6 273 18-296 2-276 (279)
6 PRK06256 biotin synthase; Vali 100.0 1.8E-46 4E-51 341.5 32.8 288 8-301 43-331 (336)
7 PRK08444 hypothetical protein; 100.0 3.2E-46 6.9E-51 337.4 28.3 287 10-306 35-352 (353)
8 TIGR03551 F420_cofH 7,8-dideme 100.0 2.5E-43 5.4E-48 320.7 29.1 286 8-302 23-343 (343)
9 TIGR03699 mena_SCO4550 menaqui 100.0 2.9E-43 6.2E-48 320.7 28.2 289 7-304 23-340 (340)
10 TIGR03700 mena_SCO4494 putativ 100.0 3E-43 6.6E-48 320.7 27.7 286 9-304 33-351 (351)
11 PRK07360 FO synthase subunit 2 100.0 3E-43 6.6E-48 322.5 27.5 291 8-306 44-369 (371)
12 TIGR00433 bioB biotin syntheta 100.0 4.3E-42 9.2E-47 307.9 33.6 275 14-292 20-296 (296)
13 PRK08445 hypothetical protein; 100.0 1.5E-42 3.3E-47 314.1 28.3 287 10-306 27-347 (348)
14 PRK09240 thiH thiamine biosynt 100.0 1E-42 2.2E-47 318.8 24.3 286 6-301 58-366 (371)
15 PRK05926 hypothetical protein; 100.0 1.7E-41 3.6E-46 308.5 28.5 282 6-299 52-367 (370)
16 PRK05927 hypothetical protein; 100.0 1.7E-41 3.8E-46 306.5 26.3 287 9-305 29-347 (350)
17 TIGR02351 thiH thiazole biosyn 100.0 4.2E-41 9E-46 307.8 23.9 283 8-300 59-364 (366)
18 PRK07094 biotin synthase; Prov 100.0 1.8E-39 3.9E-44 294.1 31.1 280 7-295 24-322 (323)
19 TIGR03550 F420_cofG 7,8-dideme 100.0 3.8E-40 8.2E-45 297.0 26.1 277 22-305 4-308 (322)
20 TIGR00423 radical SAM domain p 100.0 9.6E-40 2.1E-44 293.3 27.8 273 22-304 5-309 (309)
21 PRK09234 fbiC FO synthase; Rev 100.0 2.7E-39 5.7E-44 318.9 28.2 287 10-305 512-833 (843)
22 PRK09613 thiH thiamine biosynt 100.0 6.9E-38 1.5E-42 290.9 30.4 294 6-308 68-394 (469)
23 PRK09234 fbiC FO synthase; Rev 100.0 1.1E-37 2.3E-42 307.6 29.2 293 7-304 49-377 (843)
24 COG1060 ThiH Thiamine biosynth 100.0 6.9E-38 1.5E-42 282.8 24.5 296 5-308 41-367 (370)
25 PRK06245 cofG FO synthase subu 100.0 2.2E-37 4.8E-42 281.6 28.0 280 16-305 4-312 (336)
26 PRK06267 hypothetical protein; 100.0 2.9E-36 6.3E-41 274.1 27.6 268 5-287 10-286 (350)
27 COG2896 MoaA Molybdenum cofact 99.9 2.2E-25 4.7E-30 195.6 22.4 238 16-266 6-257 (322)
28 PLN02951 Molybderin biosynthes 99.9 2.8E-24 6E-29 197.0 24.8 238 16-266 53-306 (373)
29 PRK12928 lipoyl synthase; Prov 99.9 2.9E-24 6.2E-29 189.7 23.2 215 5-234 46-269 (290)
30 PRK13361 molybdenum cofactor b 99.9 3.1E-24 6.7E-29 194.5 23.2 237 16-266 9-261 (329)
31 PRK05481 lipoyl synthase; Prov 99.9 9.6E-24 2.1E-28 186.9 24.2 214 5-233 39-260 (289)
32 PTZ00413 lipoate synthase; Pro 99.9 2.3E-23 4.9E-28 185.0 24.6 197 29-234 155-360 (398)
33 TIGR00510 lipA lipoate synthas 99.9 3.1E-23 6.7E-28 183.4 22.1 195 29-231 69-271 (302)
34 TIGR02666 moaA molybdenum cofa 99.9 4.8E-23 1E-27 187.5 22.4 239 16-266 5-264 (334)
35 PLN02428 lipoic acid synthase 99.9 1.5E-22 3.2E-27 181.0 23.9 197 29-234 108-312 (349)
36 PRK05904 coproporphyrinogen II 99.9 3.9E-23 8.5E-28 188.2 18.9 245 25-272 8-272 (353)
37 PRK00164 moaA molybdenum cofac 99.9 1.1E-22 2.5E-27 184.9 21.9 243 15-270 11-270 (331)
38 PRK05660 HemN family oxidoredu 99.9 3.5E-23 7.5E-28 190.8 18.5 203 25-238 8-230 (378)
39 TIGR00539 hemN_rel putative ox 99.9 8E-23 1.7E-27 187.6 19.3 207 26-237 3-222 (360)
40 PRK05799 coproporphyrinogen II 99.9 5.6E-23 1.2E-27 189.9 17.9 209 25-238 5-226 (374)
41 PRK07379 coproporphyrinogen II 99.9 2.6E-22 5.5E-27 186.2 21.3 211 25-238 12-242 (400)
42 PRK08446 coproporphyrinogen II 99.9 1.5E-22 3.2E-27 184.9 18.0 186 26-216 3-197 (350)
43 PRK08207 coproporphyrinogen II 99.9 4.7E-22 1E-26 187.5 21.6 206 25-236 165-392 (488)
44 TIGR01579 MiaB-like-C MiaB-lik 99.9 7.2E-22 1.6E-26 184.7 21.3 199 25-230 141-352 (414)
45 COG1856 Uncharacterized homolo 99.9 1.4E-21 3.1E-26 159.0 19.9 235 24-268 12-251 (275)
46 PRK05628 coproporphyrinogen II 99.9 6.4E-22 1.4E-26 182.7 20.2 210 25-237 4-234 (375)
47 PRK09058 coproporphyrinogen II 99.9 7.4E-22 1.6E-26 185.7 20.4 209 25-238 63-291 (449)
48 PRK08599 coproporphyrinogen II 99.9 8E-22 1.7E-26 182.3 20.1 204 26-237 4-226 (377)
49 PRK09057 coproporphyrinogen II 99.9 1.1E-21 2.3E-26 181.2 20.5 209 25-238 6-230 (380)
50 PRK06294 coproporphyrinogen II 99.9 1.9E-22 4.2E-27 185.3 15.4 208 25-237 8-229 (370)
51 smart00729 Elp3 Elongator prot 99.9 8E-22 1.7E-26 167.6 18.0 180 29-218 7-201 (216)
52 PRK14338 (dimethylallyl)adenos 99.9 3.1E-21 6.8E-26 181.9 23.4 188 24-218 157-356 (459)
53 PRK14340 (dimethylallyl)adenos 99.9 2E-21 4.4E-26 182.2 22.0 193 24-223 151-356 (445)
54 PRK14331 (dimethylallyl)adenos 99.9 2E-21 4.3E-26 182.6 21.7 194 24-224 148-353 (437)
55 PRK08208 coproporphyrinogen II 99.9 1.2E-21 2.7E-26 183.4 20.1 209 25-237 41-261 (430)
56 PRK06582 coproporphyrinogen II 99.9 6.7E-22 1.5E-26 182.5 18.0 209 25-238 13-237 (390)
57 PRK08898 coproporphyrinogen II 99.9 1.9E-21 4.1E-26 180.3 21.0 210 25-237 21-243 (394)
58 TIGR02668 moaA_archaeal probab 99.9 3E-21 6.5E-26 173.4 21.6 236 16-266 5-253 (302)
59 TIGR01125 MiaB-like tRNA modif 99.9 3.4E-21 7.4E-26 180.8 22.6 195 25-226 138-345 (430)
60 PRK14327 (dimethylallyl)adenos 99.9 7.2E-21 1.6E-25 180.0 24.0 194 23-223 213-419 (509)
61 TIGR00089 RNA modification enz 99.9 2.9E-21 6.2E-26 181.5 20.5 199 24-229 141-352 (429)
62 TIGR01578 MiaB-like-B MiaB-lik 99.9 1.3E-20 2.8E-25 176.0 23.2 194 24-224 135-340 (420)
63 PRK14339 (dimethylallyl)adenos 99.9 1.1E-20 2.3E-25 176.4 22.5 198 23-227 128-341 (420)
64 TIGR03471 HpnJ hopanoid biosyn 99.9 7.3E-21 1.6E-25 180.8 21.3 178 29-215 202-384 (472)
65 PRK14325 (dimethylallyl)adenos 99.9 1.4E-20 3.1E-25 177.4 22.8 198 25-229 150-362 (444)
66 PRK14334 (dimethylallyl)adenos 99.9 1.2E-20 2.6E-25 177.3 22.3 196 23-225 139-346 (440)
67 PRK14326 (dimethylallyl)adenos 99.9 1.8E-20 4E-25 178.0 23.0 188 24-218 159-358 (502)
68 PRK14332 (dimethylallyl)adenos 99.9 1.6E-20 3.6E-25 176.1 22.5 192 24-224 156-360 (449)
69 PRK14335 (dimethylallyl)adenos 99.9 2.4E-20 5.1E-25 175.8 23.4 198 24-228 154-370 (455)
70 PRK14336 (dimethylallyl)adenos 99.9 1.8E-20 3.8E-25 174.8 22.3 194 24-224 126-333 (418)
71 TIGR01574 miaB-methiolase tRNA 99.9 1.8E-20 3.8E-25 176.2 22.4 194 24-224 147-355 (438)
72 PRK14330 (dimethylallyl)adenos 99.9 2.3E-20 5E-25 175.3 22.4 186 24-216 142-339 (434)
73 PRK14328 (dimethylallyl)adenos 99.9 2E-20 4.4E-25 175.8 21.8 196 24-226 149-357 (439)
74 PRK14329 (dimethylallyl)adenos 99.9 2.9E-20 6.2E-25 175.6 22.7 194 24-224 170-382 (467)
75 TIGR01212 radical SAM protein, 99.9 2.7E-20 5.9E-25 166.3 21.4 215 15-238 12-253 (302)
76 PRK14862 rimO ribosomal protei 99.9 4.8E-20 1.1E-24 173.0 23.3 196 25-229 142-359 (440)
77 TIGR00538 hemN oxygen-independ 99.9 2.7E-20 5.8E-25 175.9 20.6 206 25-237 51-276 (455)
78 COG0621 MiaB 2-methylthioadeni 99.9 3.9E-20 8.4E-25 169.7 20.5 193 23-222 145-351 (437)
79 TIGR02026 BchE magnesium-proto 99.9 3E-20 6.6E-25 177.1 20.7 176 29-215 199-384 (497)
80 COG0635 HemN Coproporphyrinoge 99.9 2.5E-20 5.4E-25 172.7 19.3 210 24-237 35-262 (416)
81 PRK14337 (dimethylallyl)adenos 99.9 8.4E-20 1.8E-24 171.8 23.1 195 24-225 150-358 (446)
82 PRK13347 coproporphyrinogen II 99.9 3.8E-20 8.2E-25 174.6 20.5 206 25-237 52-277 (453)
83 PRK14333 (dimethylallyl)adenos 99.9 6.4E-20 1.4E-24 172.8 21.4 195 24-225 150-364 (448)
84 PRK05301 pyrroloquinoline quin 99.8 2.2E-19 4.9E-24 166.2 23.3 174 23-209 17-194 (378)
85 PRK09249 coproporphyrinogen II 99.8 1E-19 2.3E-24 171.7 20.3 205 25-236 51-275 (453)
86 TIGR02109 PQQ_syn_pqqE coenzym 99.8 7.9E-19 1.7E-23 161.5 23.0 173 24-209 9-185 (358)
87 TIGR03470 HpnH hopanoid biosyn 99.8 6.2E-19 1.3E-23 158.8 20.5 195 22-231 28-224 (318)
88 cd01335 Radical_SAM Radical SA 99.8 1.1E-18 2.4E-23 146.5 18.9 178 29-215 3-187 (204)
89 PRK08629 coproporphyrinogen II 99.8 1.4E-18 3E-23 162.3 21.1 258 25-296 54-335 (433)
90 TIGR01290 nifB nitrogenase cof 99.8 7.4E-18 1.6E-22 157.4 23.1 205 25-237 27-260 (442)
91 TIGR02493 PFLA pyruvate format 99.8 6.8E-18 1.5E-22 146.3 21.0 195 28-233 20-233 (235)
92 TIGR01211 ELP3 histone acetylt 99.8 1.7E-17 3.8E-22 156.8 24.9 217 19-239 65-336 (522)
93 COG0320 LipA Lipoate synthase 99.8 5E-18 1.1E-22 142.9 18.6 197 29-234 76-278 (306)
94 COG2100 Predicted Fe-S oxidore 99.8 1.5E-17 3.4E-22 142.8 20.0 198 29-232 113-324 (414)
95 PF04055 Radical_SAM: Radical 99.8 3.4E-18 7.3E-23 139.2 14.0 155 29-191 3-166 (166)
96 TIGR01210 conserved hypothetic 99.8 1.9E-16 4.1E-21 142.1 23.6 188 15-215 8-219 (313)
97 PRK11145 pflA pyruvate formate 99.8 1.1E-16 2.4E-21 139.6 20.7 195 29-234 26-239 (246)
98 PRK13762 tRNA-modifying enzyme 99.8 1.6E-16 3.5E-21 142.8 21.8 206 22-236 57-291 (322)
99 COG1242 Predicted Fe-S oxidore 99.7 1.3E-15 2.8E-20 128.8 20.1 220 15-244 18-266 (312)
100 TIGR02495 NrdG2 anaerobic ribo 99.7 3.8E-15 8.2E-20 124.9 19.9 157 29-195 22-183 (191)
101 TIGR03822 AblA_like_2 lysine-2 99.7 4.7E-15 1E-19 133.7 21.1 191 25-238 91-296 (321)
102 PRK14456 ribosomal RNA large s 99.7 1.1E-14 2.4E-19 132.6 23.2 198 29-244 127-350 (368)
103 PRK00955 hypothetical protein; 99.7 6.3E-15 1.4E-19 140.6 20.4 188 22-215 292-525 (620)
104 PRK14460 ribosomal RNA large s 99.7 3.8E-14 8.2E-19 128.8 23.4 198 29-244 108-329 (354)
105 COG1180 PflA Pyruvate-formate 99.7 1.9E-14 4.2E-19 125.6 20.7 193 28-233 40-238 (260)
106 PRK13758 anaerobic sulfatase-m 99.7 2E-14 4.4E-19 132.8 21.4 175 25-209 7-198 (370)
107 COG1032 Fe-S oxidoreductase [E 99.7 4.5E-15 9.8E-20 142.0 17.2 193 24-223 200-410 (490)
108 PRK14469 ribosomal RNA large s 99.6 8.1E-14 1.8E-18 126.8 23.7 195 29-242 107-320 (343)
109 PRK01254 hypothetical protein; 99.6 1.7E-14 3.7E-19 136.9 19.7 187 23-215 373-607 (707)
110 PRK13745 anaerobic sulfatase-m 99.6 2.3E-14 5E-19 133.9 20.3 182 22-208 13-205 (412)
111 PRK14455 ribosomal RNA large s 99.6 9.5E-14 2.1E-18 126.4 23.2 189 29-235 115-325 (356)
112 COG1243 ELP3 Histone acetyltra 99.6 1.2E-13 2.5E-18 124.6 23.1 221 17-239 62-328 (515)
113 PRK14459 ribosomal RNA large s 99.6 1.4E-13 2.9E-18 125.0 23.6 201 29-244 127-356 (373)
114 COG0535 Predicted Fe-S oxidore 99.6 1.3E-13 2.8E-18 126.2 22.2 173 24-210 21-199 (347)
115 PF06968 BATS: Biotin and Thia 99.6 1.6E-15 3.6E-20 111.1 7.6 91 203-294 2-93 (93)
116 COG0731 Fe-S oxidoreductases [ 99.6 3.8E-14 8.3E-19 123.3 17.3 172 29-210 29-216 (296)
117 PRK14468 ribosomal RNA large s 99.6 2.4E-13 5.3E-18 123.1 23.3 198 29-244 99-318 (343)
118 smart00876 BATS Biotin and Thi 99.6 3.6E-15 7.9E-20 109.6 9.0 93 202-294 1-94 (94)
119 TIGR00048 radical SAM enzyme, 99.6 4.3E-13 9.4E-18 122.1 24.1 188 29-234 111-320 (355)
120 KOG2876 Molybdenum cofactor bi 99.6 1.5E-15 3.2E-20 127.2 7.3 192 29-230 17-213 (323)
121 PRK14470 ribosomal RNA large s 99.6 3.9E-13 8.5E-18 121.1 22.4 185 29-232 103-305 (336)
122 TIGR03278 methan_mark_10 putat 99.6 3E-13 6.6E-18 124.4 21.4 169 53-229 51-236 (404)
123 COG2516 Biotin synthase-relate 99.6 9.7E-14 2.1E-18 119.8 15.8 203 29-242 37-258 (339)
124 PRK14463 ribosomal RNA large s 99.6 1.2E-12 2.5E-17 118.9 23.1 198 29-244 109-322 (349)
125 COG0641 AslB Arylsulfatase reg 99.6 6.5E-13 1.4E-17 121.3 20.5 190 29-229 13-216 (378)
126 PRK14466 ribosomal RNA large s 99.5 3.3E-12 7.2E-17 114.7 24.0 198 29-244 109-322 (345)
127 TIGR02494 PFLE_PFLC glycyl-rad 99.5 4.4E-13 9.6E-18 120.1 17.9 169 56-232 106-291 (295)
128 PRK14462 ribosomal RNA large s 99.5 3.2E-12 6.9E-17 115.7 22.1 197 29-243 116-334 (356)
129 PRK14457 ribosomal RNA large s 99.5 7.9E-12 1.7E-16 113.1 24.4 196 29-242 107-325 (345)
130 TIGR00238 KamA family protein. 99.5 1.5E-12 3.3E-17 117.7 19.5 186 29-238 119-319 (331)
131 PRK14467 ribosomal RNA large s 99.5 6.5E-12 1.4E-16 113.7 23.4 199 29-244 105-326 (348)
132 TIGR03821 AblA_like_1 lysine-2 99.5 1.1E-12 2.3E-17 118.1 16.4 186 29-238 102-302 (321)
133 TIGR03820 lys_2_3_AblA lysine- 99.5 1E-11 2.2E-16 114.1 21.3 187 29-238 114-314 (417)
134 PRK14454 ribosomal RNA large s 99.5 2.3E-11 5E-16 110.2 23.0 196 29-242 107-321 (342)
135 PRK10076 pyruvate formate lyas 99.4 2E-11 4.4E-16 103.3 19.9 169 56-234 19-204 (213)
136 PRK14453 chloramphenicol/florf 99.4 3.7E-11 8.1E-16 108.8 22.6 203 29-244 106-327 (347)
137 KOG2672 Lipoate synthase [Coen 99.4 3.9E-12 8.5E-17 107.4 14.9 192 28-227 116-314 (360)
138 PRK11194 ribosomal RNA large s 99.4 1.1E-10 2.4E-15 106.4 23.9 188 29-234 109-324 (372)
139 PRK14464 ribosomal RNA large s 99.4 9.4E-11 2E-15 105.5 20.6 197 29-243 102-313 (344)
140 PRK14465 ribosomal RNA large s 99.4 2.7E-10 5.8E-15 102.7 22.7 197 29-244 111-326 (342)
141 TIGR03365 Bsubt_queE 7-cyano-7 99.4 1E-10 2.3E-15 101.1 18.9 132 28-176 27-160 (238)
142 COG2108 Uncharacterized conser 99.3 2.6E-11 5.5E-16 105.1 14.1 162 28-209 33-204 (353)
143 COG4277 Predicted DNA-binding 99.3 3.1E-11 6.7E-16 103.2 13.5 194 29-230 60-279 (404)
144 PRK14461 ribosomal RNA large s 99.3 1E-09 2.3E-14 98.9 22.7 201 29-244 113-349 (371)
145 KOG4355 Predicted Fe-S oxidore 99.3 1.6E-10 3.4E-15 102.0 14.2 197 25-229 190-400 (547)
146 COG5014 Predicted Fe-S oxidore 99.3 2.5E-10 5.5E-15 90.1 13.8 167 28-201 46-219 (228)
147 COG1031 Uncharacterized Fe-S o 99.2 1.4E-09 3E-14 98.3 17.9 187 25-217 186-414 (560)
148 cd03174 DRE_TIM_metallolyase D 99.0 1.2E-07 2.6E-12 83.6 22.2 222 54-293 14-248 (265)
149 COG0820 Predicted Fe-S-cluster 99.0 3.3E-08 7.1E-13 88.1 18.2 186 29-232 107-315 (349)
150 PF13353 Fer4_12: 4Fe-4S singl 99.0 1.1E-09 2.4E-14 86.8 7.1 103 29-139 11-118 (139)
151 COG1533 SplB DNA repair photol 99.0 7.8E-08 1.7E-12 85.3 17.8 175 23-203 30-218 (297)
152 COG1625 Fe-S oxidoreductase, r 98.9 4.6E-08 1E-12 88.2 13.8 198 30-238 34-247 (414)
153 COG1313 PflX Uncharacterized F 98.8 3.3E-07 7.3E-12 78.7 16.3 194 30-235 125-327 (335)
154 KOG2492 CDK5 activator-binding 98.8 2.5E-07 5.3E-12 82.8 15.9 182 25-214 223-440 (552)
155 COG1244 Predicted Fe-S oxidore 98.8 3.4E-06 7.4E-11 73.7 20.9 204 29-238 53-283 (358)
156 PF13394 Fer4_14: 4Fe-4S singl 98.7 5.2E-08 1.1E-12 75.0 6.7 82 28-117 3-92 (119)
157 TIGR02826 RNR_activ_nrdG3 anae 98.7 4.5E-07 9.9E-12 72.2 11.9 96 29-135 21-116 (147)
158 COG1509 KamA Lysine 2,3-aminom 98.6 2.3E-06 5E-11 76.0 16.7 189 28-237 116-317 (369)
159 cd07939 DRE_TIM_NifV Streptomy 98.5 0.00015 3.2E-09 63.7 23.6 218 54-294 15-242 (259)
160 TIGR03217 4OH_2_O_val_ald 4-hy 98.4 0.0002 4.4E-09 65.0 24.0 215 56-294 21-247 (333)
161 COG1964 Predicted Fe-S oxidore 98.4 4.4E-06 9.5E-11 76.1 12.8 143 56-210 91-241 (475)
162 TIGR02090 LEU1_arch isopropylm 98.4 0.00029 6.4E-09 64.9 23.9 218 54-294 17-244 (363)
163 cd07948 DRE_TIM_HCS Saccharomy 98.4 0.00041 8.8E-09 60.9 23.2 215 54-292 17-241 (262)
164 PRK11858 aksA trans-homoaconit 98.3 0.00034 7.3E-09 64.9 23.6 218 54-294 21-248 (378)
165 PF00682 HMGL-like: HMGL-like 98.3 4.7E-05 1E-09 66.0 17.1 220 56-291 11-237 (237)
166 PRK05692 hydroxymethylglutaryl 98.3 0.00071 1.5E-08 60.2 24.1 225 54-294 21-264 (287)
167 cd07943 DRE_TIM_HOA 4-hydroxy- 98.3 0.00082 1.8E-08 59.2 24.3 213 55-294 18-244 (263)
168 PRK08195 4-hyroxy-2-oxovalerat 98.3 0.00071 1.5E-08 61.6 24.0 214 56-293 22-247 (337)
169 TIGR02491 NrdG anaerobic ribon 98.3 4.9E-06 1.1E-10 67.1 8.9 85 30-122 22-112 (154)
170 cd07938 DRE_TIM_HMGL 3-hydroxy 98.2 0.001 2.2E-08 58.9 23.4 225 54-294 15-258 (274)
171 PRK11121 nrdG anaerobic ribonu 98.2 9.8E-06 2.1E-10 65.3 9.7 101 29-138 22-129 (154)
172 PLN02746 hydroxymethylglutaryl 98.2 0.00098 2.1E-08 60.6 23.2 224 54-294 63-306 (347)
173 TIGR02660 nifV_homocitr homoci 98.2 0.00091 2E-08 61.7 23.2 218 54-294 18-245 (365)
174 cd07944 DRE_TIM_HOA_like 4-hyd 98.2 0.0015 3.4E-08 57.4 23.1 212 55-290 16-238 (266)
175 cd07940 DRE_TIM_IPMS 2-isoprop 98.1 0.0021 4.5E-08 56.8 22.5 215 55-291 16-245 (268)
176 KOG2535 RNA polymerase II elon 98.1 0.00025 5.5E-09 62.6 15.9 182 56-238 150-365 (554)
177 COG0602 NrdG Organic radical a 98.1 9.9E-06 2.1E-10 68.7 6.6 85 29-120 28-114 (212)
178 cd07941 DRE_TIM_LeuA3 Desulfob 98.0 0.008 1.7E-07 53.2 23.4 218 54-292 15-253 (273)
179 PRK09389 (R)-citramalate synth 97.9 0.0055 1.2E-07 58.7 23.1 217 54-294 19-246 (488)
180 cd07945 DRE_TIM_CMS Leptospira 97.9 0.012 2.5E-07 52.3 23.7 221 54-294 14-251 (280)
181 cd07937 DRE_TIM_PC_TC_5S Pyruv 97.9 0.0096 2.1E-07 52.7 22.1 214 55-294 17-251 (275)
182 TIGR03279 cyano_FeS_chp putati 97.8 0.00065 1.4E-08 62.9 13.7 120 112-231 122-248 (433)
183 PRK00915 2-isopropylmalate syn 97.7 0.0081 1.8E-07 58.0 21.1 215 54-290 21-251 (513)
184 PRK08091 ribulose-phosphate 3- 97.6 0.016 3.5E-07 49.5 19.1 196 56-288 22-224 (228)
185 PRK12330 oxaloacetate decarbox 97.6 0.026 5.6E-07 53.8 22.0 215 55-294 23-259 (499)
186 PRK12331 oxaloacetate decarbox 97.6 0.054 1.2E-06 51.3 23.2 215 55-294 22-256 (448)
187 TIGR01108 oadA oxaloacetate de 97.5 0.043 9.4E-07 53.6 22.6 216 55-294 17-251 (582)
188 PRK14041 oxaloacetate decarbox 97.5 0.066 1.4E-06 50.8 23.1 216 55-294 21-255 (467)
189 PRK14057 epimerase; Provisiona 97.4 0.04 8.7E-07 47.8 18.3 182 56-273 29-225 (254)
190 PRK14040 oxaloacetate decarbox 97.4 0.12 2.5E-06 50.8 23.6 214 55-294 23-257 (593)
191 PRK08005 epimerase; Validated 97.3 0.08 1.7E-06 44.8 19.5 182 56-273 10-195 (210)
192 PRK09282 pyruvate carboxylase 97.3 0.12 2.6E-06 50.8 22.7 215 55-293 22-255 (592)
193 PRK12581 oxaloacetate decarbox 97.3 0.17 3.7E-06 47.9 22.9 214 56-294 32-265 (468)
194 PRK08745 ribulose-phosphate 3- 97.3 0.094 2E-06 44.8 20.0 197 56-290 13-218 (223)
195 PRK12344 putative alpha-isopro 97.2 0.15 3.3E-06 49.3 22.7 217 54-292 22-259 (524)
196 TIGR00977 LeuA_rel 2-isopropyl 97.2 0.21 4.5E-06 48.4 23.5 218 54-292 18-256 (526)
197 PLN03228 methylthioalkylmalate 97.2 0.19 4.1E-06 48.3 22.8 217 54-291 101-342 (503)
198 TIGR00973 leuA_bact 2-isopropy 97.2 0.099 2.1E-06 50.3 20.8 214 54-289 18-247 (494)
199 COG0119 LeuA Isopropylmalate/h 97.1 0.13 2.7E-06 48.1 20.4 193 54-266 19-220 (409)
200 TIGR03128 RuMP_HxlA 3-hexulose 97.1 0.13 2.7E-06 43.4 19.4 192 56-289 9-204 (206)
201 COG0036 Rpe Pentose-5-phosphat 97.1 0.13 2.8E-06 43.4 18.9 181 56-272 13-200 (220)
202 KOG3111 D-ribulose-5-phosphate 97.1 0.11 2.5E-06 42.5 18.3 192 57-289 15-215 (224)
203 PRK14042 pyruvate carboxylase 97.1 0.3 6.6E-06 47.8 23.0 214 56-294 23-256 (596)
204 PRK08883 ribulose-phosphate 3- 97.0 0.2 4.4E-06 42.8 19.1 196 56-289 9-213 (220)
205 PRK09722 allulose-6-phosphate 96.7 0.36 7.9E-06 41.4 19.8 196 57-289 13-217 (229)
206 PLN02321 2-isopropylmalate syn 96.3 1.4 3E-05 43.7 22.4 221 54-291 103-343 (632)
207 PF00834 Ribul_P_3_epim: Ribul 96.2 0.049 1.1E-06 45.8 9.5 178 57-270 10-195 (201)
208 PRK11613 folP dihydropteroate 96.0 0.5 1.1E-05 41.9 15.3 135 56-193 35-206 (282)
209 PRK12999 pyruvate carboxylase; 95.9 1.8 3.8E-05 46.2 21.5 215 55-293 551-792 (1146)
210 COG5016 Pyruvate/oxaloacetate 95.7 0.9 2E-05 41.7 15.9 215 56-294 25-258 (472)
211 cd00739 DHPS DHPS subgroup of 95.6 0.79 1.7E-05 40.1 15.1 77 55-133 20-101 (257)
212 TIGR00735 hisF imidazoleglycer 95.6 1.4 3E-05 38.5 19.5 204 62-294 33-253 (254)
213 PTZ00170 D-ribulose-5-phosphat 95.6 1.3 2.8E-05 38.0 18.4 200 56-289 16-219 (228)
214 cd04731 HisF The cyclase subun 95.4 1.6 3.4E-05 37.8 18.6 201 60-289 28-242 (243)
215 cd00331 IGPS Indole-3-glycerol 95.4 1.5 3.2E-05 37.3 18.0 176 56-273 28-205 (217)
216 PRK02083 imidazole glycerol ph 95.2 1.9 4.2E-05 37.5 18.9 205 62-295 33-252 (253)
217 PRK12330 oxaloacetate decarbox 95.1 2 4.3E-05 41.3 16.9 223 56-295 152-399 (499)
218 COG0106 HisA Phosphoribosylfor 95.0 1.4 3E-05 37.9 13.9 196 62-288 34-239 (241)
219 cd07947 DRE_TIM_Re_CS Clostrid 94.9 2.5 5.4E-05 37.5 23.5 221 56-294 18-263 (279)
220 PRK14024 phosphoribosyl isomer 94.9 2.2 4.9E-05 36.9 19.0 197 60-286 33-238 (241)
221 PRK13307 bifunctional formalde 94.7 3.7 8E-05 38.2 17.9 191 56-289 182-376 (391)
222 TIGR01496 DHPS dihydropteroate 94.3 2.7 5.7E-05 36.9 14.8 78 54-133 18-100 (257)
223 TIGR00970 leuA_yeast 2-isoprop 94.3 6 0.00013 38.9 22.6 230 53-294 42-296 (564)
224 PF05853 DUF849: Prokaryotic p 94.2 3.8 8.2E-05 36.2 18.4 225 56-298 23-264 (272)
225 PF05913 DUF871: Bacterial pro 94.1 0.077 1.7E-06 48.6 4.7 77 57-135 12-96 (357)
226 PRK00507 deoxyribose-phosphate 94.0 3.6 7.7E-05 35.2 15.3 178 56-266 19-205 (221)
227 COG3589 Uncharacterized conser 93.8 4.8 0.0001 36.2 16.9 82 57-139 14-102 (360)
228 cd00423 Pterin_binding Pterin 93.8 4.2 9.2E-05 35.6 15.0 75 56-132 21-100 (258)
229 cd07942 DRE_TIM_LeuA Mycobacte 93.7 4.8 0.0001 35.8 23.7 223 53-293 17-267 (284)
230 TIGR01769 GGGP geranylgeranylg 93.4 0.97 2.1E-05 38.1 9.8 75 55-135 130-205 (205)
231 PRK14847 hypothetical protein; 93.3 6.2 0.00013 35.9 21.8 222 54-294 49-299 (333)
232 cd04732 HisA HisA. Phosphorib 93.3 4.8 0.0001 34.4 16.1 186 60-273 30-223 (234)
233 PRK15452 putative protease; Pr 93.2 5 0.00011 38.1 15.2 88 108-202 5-94 (443)
234 TIGR01303 IMP_DH_rel_1 IMP deh 93.0 1.3 2.8E-05 42.4 11.3 131 59-206 224-359 (475)
235 TIGR02146 LysS_fung_arch homoc 92.7 7.7 0.00017 35.3 16.5 193 55-266 16-212 (344)
236 PLN02334 ribulose-phosphate 3- 92.6 6 0.00013 33.9 17.6 195 57-288 18-219 (229)
237 PF00218 IGPS: Indole-3-glycer 92.6 3.3 7.1E-05 36.2 12.2 174 60-276 69-245 (254)
238 PLN02617 imidazole glycerol ph 92.4 12 0.00025 36.6 20.7 223 56-294 264-536 (538)
239 PRK03739 2-isopropylmalate syn 92.3 12 0.00026 36.7 22.3 223 53-293 46-296 (552)
240 TIGR03279 cyano_FeS_chp putati 92.2 0.32 6.9E-06 45.5 5.7 93 29-127 80-206 (433)
241 PF03102 NeuB: NeuB family; I 92.2 7.2 0.00016 33.8 14.3 165 92-289 55-228 (241)
242 PRK13585 1-(5-phosphoribosyl)- 92.2 7.1 0.00015 33.6 17.0 74 61-138 34-108 (241)
243 KOG1160 Fe-S oxidoreductase [E 92.1 3.4 7.3E-05 38.5 11.9 137 87-230 363-509 (601)
244 TIGR00736 nifR3_rel_arch TIM-b 92.0 7.4 0.00016 33.5 17.2 188 56-270 27-221 (231)
245 cd01299 Met_dep_hydrolase_A Me 92.0 4.9 0.00011 36.5 13.4 78 56-135 117-200 (342)
246 TIGR01182 eda Entner-Doudoroff 91.9 6.8 0.00015 33.0 16.7 162 56-272 17-179 (204)
247 PF07745 Glyco_hydro_53: Glyco 91.9 9.7 0.00021 34.7 15.2 168 69-247 34-239 (332)
248 PF03740 PdxJ: Pyridoxal phosp 91.8 1.5 3.3E-05 37.6 9.0 120 58-185 73-200 (239)
249 TIGR00007 phosphoribosylformim 91.8 7.5 0.00016 33.2 17.2 185 61-273 30-222 (230)
250 COG1242 Predicted Fe-S oxidore 91.8 8.5 0.00018 33.8 14.7 135 56-208 97-267 (312)
251 TIGR01163 rpe ribulose-phospha 91.7 7 0.00015 32.7 17.8 192 56-285 8-207 (210)
252 TIGR00640 acid_CoA_mut_C methy 91.6 4.4 9.6E-05 31.5 10.8 69 56-134 40-111 (132)
253 TIGR03849 arch_ComA phosphosul 91.5 8.3 0.00018 33.2 13.2 129 56-203 9-153 (237)
254 COG2185 Sbm Methylmalonyl-CoA 91.5 1.7 3.7E-05 34.2 8.3 70 56-134 50-121 (143)
255 PRK00748 1-(5-phosphoribosyl)- 91.4 3.3 7.2E-05 35.4 11.0 75 60-138 31-106 (233)
256 cd00958 DhnA Class I fructose- 91.3 4.8 0.0001 34.5 12.0 126 56-203 73-213 (235)
257 PRK11572 copper homeostasis pr 91.3 6.5 0.00014 34.1 12.3 112 58-187 72-187 (248)
258 PLN02591 tryptophan synthase 91.2 5.9 0.00013 34.5 12.3 80 56-135 115-218 (250)
259 TIGR00284 dihydropteroate synt 91.1 7.4 0.00016 37.5 13.8 124 59-192 165-304 (499)
260 PF04481 DUF561: Protein of un 91.0 8.8 0.00019 32.4 17.9 186 56-270 24-215 (242)
261 cd00003 PNPsynthase Pyridoxine 90.8 1.8 4E-05 36.9 8.4 94 91-189 108-201 (234)
262 COG0107 HisF Imidazoleglycerol 90.8 1.8 4E-05 36.8 8.3 218 58-295 29-254 (256)
263 COG0826 Collagenase and relate 90.8 1.2 2.6E-05 40.7 8.0 81 117-203 15-98 (347)
264 TIGR01235 pyruv_carbox pyruvat 90.7 27 0.00058 37.5 20.1 214 56-293 550-790 (1143)
265 PRK13587 1-(5-phosphoribosyl)- 90.5 2.8 6E-05 36.2 9.6 72 64-139 36-109 (234)
266 TIGR00559 pdxJ pyridoxine 5'-p 90.4 2.2 4.8E-05 36.5 8.5 93 91-188 108-200 (237)
267 PRK14114 1-(5-phosphoribosyl)- 90.0 2.8 6.1E-05 36.3 9.2 76 60-139 31-106 (241)
268 PF00809 Pterin_bind: Pterin b 89.9 6.4 0.00014 33.3 11.2 75 56-132 16-96 (210)
269 TIGR03572 WbuZ glycosyl amidat 89.6 12 0.00027 31.9 17.3 73 60-136 31-104 (232)
270 cd06543 GH18_PF-ChiA-like PF-C 89.5 12 0.00026 33.5 13.0 110 92-207 53-180 (294)
271 COG0134 TrpC Indole-3-glycerol 89.5 13 0.00029 32.3 14.7 177 56-277 66-244 (254)
272 TIGR03217 4OH_2_O_val_ald 4-hy 89.5 3.6 7.8E-05 37.5 9.9 34 93-126 143-179 (333)
273 PRK13753 dihydropteroate synth 89.5 6.6 0.00014 34.8 11.1 77 55-133 21-101 (279)
274 CHL00200 trpA tryptophan synth 89.4 4.4 9.5E-05 35.6 10.1 80 56-135 128-231 (263)
275 TIGR01037 pyrD_sub1_fam dihydr 89.4 7.8 0.00017 34.7 12.0 79 57-135 167-263 (300)
276 TIGR00620 sporelyase spore pho 89.4 4 8.6E-05 34.1 9.2 100 95-195 12-116 (199)
277 COG3623 SgaU Putative L-xylulo 89.3 2 4.4E-05 36.5 7.3 94 111-208 14-120 (287)
278 PRK10550 tRNA-dihydrouridine s 89.2 5.2 0.00011 36.1 10.7 85 58-146 147-237 (312)
279 cd00959 DeoC 2-deoxyribose-5-p 89.2 3 6.5E-05 35.1 8.7 74 56-133 128-201 (203)
280 cd04726 KGPDC_HPS 3-Keto-L-gul 89.0 12 0.00026 31.1 17.1 176 56-272 10-189 (202)
281 PRK05265 pyridoxine 5'-phospha 89.0 3.6 7.7E-05 35.3 8.8 120 58-186 75-200 (239)
282 PRK13125 trpA tryptophan synth 88.9 15 0.00031 31.9 22.2 201 56-289 15-235 (244)
283 PRK13957 indole-3-glycerol-pho 88.9 15 0.00032 31.9 15.7 177 56-277 61-238 (247)
284 PRK12331 oxaloacetate decarbox 88.9 5.5 0.00012 37.9 11.0 102 56-171 151-258 (448)
285 TIGR02320 PEP_mutase phosphoen 88.9 16 0.00036 32.4 16.4 203 72-292 38-263 (285)
286 PRK13523 NADPH dehydrogenase N 88.8 2.3 4.9E-05 38.9 8.1 80 56-135 224-305 (337)
287 cd07943 DRE_TIM_HOA 4-hydroxy- 88.7 5.4 0.00012 35.0 10.3 105 59-179 112-223 (263)
288 cd04724 Tryptophan_synthase_al 88.6 15 0.00033 31.8 19.2 185 57-272 12-218 (242)
289 PRK07807 inosine 5-monophospha 88.6 6.9 0.00015 37.6 11.5 119 59-189 226-350 (479)
290 PLN02446 (5-phosphoribosyl)-5- 88.5 1.6 3.6E-05 38.1 6.7 68 60-135 44-111 (262)
291 PF03932 CutC: CutC family; I 88.5 3.2 7E-05 34.8 8.2 73 58-135 71-147 (201)
292 cd07944 DRE_TIM_HOA_like 4-hyd 88.3 7.2 0.00016 34.3 10.7 109 56-179 106-221 (266)
293 cd02803 OYE_like_FMN_family Ol 88.1 3.5 7.7E-05 37.3 9.0 80 56-135 225-311 (327)
294 COG0685 MetF 5,10-methylenetet 88.1 6.5 0.00014 35.1 10.4 101 56-168 89-203 (291)
295 PF06180 CbiK: Cobalt chelatas 88.1 3.7 8E-05 36.0 8.6 146 56-212 58-211 (262)
296 TIGR00262 trpA tryptophan synt 87.9 18 0.00038 31.7 20.6 186 57-272 22-230 (256)
297 COG3142 CutC Uncharacterized p 87.9 15 0.00032 31.3 11.6 118 58-190 72-191 (241)
298 PRK14042 pyruvate carboxylase 87.9 7.2 0.00016 38.5 11.3 78 56-139 151-233 (596)
299 PRK13586 1-(5-phosphoribosyl)- 87.7 5.1 0.00011 34.5 9.2 181 60-272 31-221 (232)
300 PF10113 Fibrillarin_2: Fibril 87.6 7.1 0.00015 36.2 10.2 135 149-298 202-354 (505)
301 PRK00278 trpC indole-3-glycero 87.2 20 0.00043 31.5 18.0 172 60-273 71-244 (260)
302 COG0826 Collagenase and relate 87.1 22 0.00048 32.6 13.4 127 62-191 16-159 (347)
303 PF04131 NanE: Putative N-acet 87.1 7.2 0.00016 32.2 9.2 106 65-188 57-163 (192)
304 PF00977 His_biosynth: Histidi 87.1 1.7 3.8E-05 37.3 6.0 182 56-270 29-221 (229)
305 PF01208 URO-D: Uroporphyrinog 86.8 11 0.00024 34.3 11.5 71 63-135 186-263 (343)
306 PRK08195 4-hyroxy-2-oxovalerat 86.8 7 0.00015 35.7 10.0 34 92-125 143-179 (337)
307 cd04738 DHOD_2_like Dihydrooro 86.7 5.8 0.00013 36.0 9.5 79 56-135 213-309 (327)
308 PRK07565 dihydroorotate dehydr 86.6 25 0.00054 32.0 14.9 192 92-294 86-297 (334)
309 PF10566 Glyco_hydro_97: Glyco 86.5 11 0.00024 33.2 10.7 108 56-172 29-156 (273)
310 TIGR00126 deoC deoxyribose-pho 86.4 19 0.00041 30.5 17.9 176 56-266 15-201 (211)
311 PRK15452 putative protease; Pr 86.4 28 0.00061 33.1 14.1 123 65-190 16-155 (443)
312 cd04740 DHOD_1B_like Dihydroor 86.4 23 0.00051 31.5 17.5 192 93-294 75-288 (296)
313 PLN02746 hydroxymethylglutaryl 86.0 16 0.00034 33.5 11.8 113 56-179 155-279 (347)
314 PRK04128 1-(5-phosphoribosyl)- 86.0 6.6 0.00014 33.7 9.0 75 57-139 31-106 (228)
315 cd07939 DRE_TIM_NifV Streptomy 85.9 8.6 0.00019 33.6 9.9 109 56-179 103-220 (259)
316 cd07937 DRE_TIM_PC_TC_5S Pyruv 85.9 9 0.0002 33.9 10.1 125 57-195 116-248 (275)
317 TIGR03586 PseI pseudaminic aci 85.8 27 0.00059 31.7 20.7 178 57-266 15-219 (327)
318 cd02810 DHOD_DHPD_FMN Dihydroo 85.8 6.8 0.00015 34.8 9.4 80 56-135 173-272 (289)
319 TIGR00126 deoC deoxyribose-pho 85.8 5 0.00011 34.0 8.0 12 17-28 51-62 (211)
320 TIGR01108 oadA oxaloacetate de 85.6 9.2 0.0002 37.7 10.8 101 56-170 146-252 (582)
321 COG0269 SgbH 3-hexulose-6-phos 85.5 21 0.00046 30.2 19.7 194 54-289 11-210 (217)
322 COG0159 TrpA Tryptophan syntha 85.4 22 0.00048 31.2 11.8 17 118-134 112-128 (265)
323 PRK13396 3-deoxy-7-phosphohept 85.4 30 0.00065 31.8 19.2 185 57-270 113-307 (352)
324 PF01487 DHquinase_I: Type I 3 85.3 22 0.00048 30.2 13.6 161 56-244 7-181 (224)
325 PRK14041 oxaloacetate decarbox 85.3 9.6 0.00021 36.4 10.4 78 56-139 150-232 (467)
326 PF00290 Trp_syntA: Tryptophan 85.3 25 0.00054 30.8 16.1 186 57-272 22-229 (259)
327 TIGR02129 hisA_euk phosphoribo 85.3 4.9 0.00011 35.0 7.8 65 62-136 41-105 (253)
328 PRK05286 dihydroorotate dehydr 85.2 6 0.00013 36.2 8.9 80 56-135 222-318 (344)
329 PRK12581 oxaloacetate decarbox 85.2 11 0.00024 35.9 10.7 103 56-172 160-268 (468)
330 cd02071 MM_CoA_mut_B12_BD meth 85.2 14 0.00031 28.1 9.7 69 56-134 37-108 (122)
331 PRK05848 nicotinate-nucleotide 85.1 5.9 0.00013 35.0 8.4 58 68-135 198-257 (273)
332 PRK09282 pyruvate carboxylase 85.1 11 0.00023 37.4 11.0 78 56-139 151-233 (592)
333 PF01136 Peptidase_U32: Peptid 85.1 6.6 0.00014 33.6 8.7 68 59-139 2-71 (233)
334 TIGR01305 GMP_reduct_1 guanosi 85.1 11 0.00024 34.1 10.1 45 92-136 134-179 (343)
335 COG1751 Uncharacterized conser 85.1 17 0.00038 28.8 11.7 109 58-175 13-132 (186)
336 cd04735 OYE_like_4_FMN Old yel 85.0 6.2 0.00013 36.3 8.9 93 56-148 232-328 (353)
337 COG5016 Pyruvate/oxaloacetate 84.9 8.2 0.00018 35.8 9.2 77 52-135 91-176 (472)
338 PRK06015 keto-hydroxyglutarate 84.7 23 0.00049 29.8 16.9 160 56-270 13-173 (201)
339 PRK13802 bifunctional indole-3 84.6 48 0.001 33.5 17.9 191 61-295 72-264 (695)
340 PF09370 TIM-br_sig_trns: TIM- 84.4 8.5 0.00018 33.6 8.7 97 92-192 136-238 (268)
341 PRK13397 3-deoxy-7-phosphohept 84.4 27 0.00058 30.4 18.8 206 57-290 27-247 (250)
342 PRK14040 oxaloacetate decarbox 84.2 11 0.00025 37.1 10.7 78 56-139 152-234 (593)
343 PRK05096 guanosine 5'-monophos 84.2 13 0.00029 33.7 10.2 94 91-188 134-232 (346)
344 TIGR03572 WbuZ glycosyl amidat 84.1 5.6 0.00012 34.1 7.8 71 61-135 155-227 (232)
345 TIGR02320 PEP_mutase phosphoen 84.1 9 0.00019 34.1 9.1 86 34-127 117-204 (285)
346 PRK10415 tRNA-dihydrouridine s 84.0 9.7 0.00021 34.5 9.6 72 59-135 149-224 (321)
347 PRK00507 deoxyribose-phosphate 84.0 10 0.00022 32.4 9.1 76 56-135 133-208 (221)
348 PRK06806 fructose-bisphosphate 83.8 31 0.00067 30.6 20.5 192 56-269 26-230 (281)
349 PF01729 QRPTase_C: Quinolinat 83.7 5.2 0.00011 32.6 6.9 65 57-135 89-155 (169)
350 cd00537 MTHFR Methylenetetrahy 83.7 19 0.00041 31.7 11.1 49 56-104 70-123 (274)
351 TIGR03569 NeuB_NnaB N-acetylne 83.6 35 0.00075 31.1 20.4 179 57-266 14-220 (329)
352 cd02810 DHOD_DHPD_FMN Dihydroo 83.5 11 0.00024 33.4 9.6 94 56-168 80-191 (289)
353 PRK13111 trpA tryptophan synth 83.4 30 0.00066 30.3 12.1 112 61-190 106-221 (258)
354 PRK07114 keto-hydroxyglutarate 83.3 7.1 0.00015 33.3 7.8 165 56-270 24-189 (222)
355 cd07940 DRE_TIM_IPMS 2-isoprop 83.3 13 0.00028 32.6 9.9 106 59-179 114-227 (268)
356 COG0269 SgbH 3-hexulose-6-phos 83.2 17 0.00038 30.7 9.9 103 65-186 73-180 (217)
357 TIGR00735 hisF imidazoleglycer 83.1 16 0.00034 31.9 10.3 98 58-169 154-253 (254)
358 TIGR00007 phosphoribosylformim 83.1 10 0.00022 32.3 9.0 69 63-135 149-218 (230)
359 PTZ00124 adenosine deaminase; 83.0 16 0.00036 33.7 10.7 87 93-195 206-301 (362)
360 PLN02321 2-isopropylmalate syn 82.8 25 0.00054 35.0 12.4 110 56-179 203-325 (632)
361 CHL00200 trpA tryptophan synth 82.8 32 0.0007 30.2 19.1 186 57-272 27-234 (263)
362 PF00478 IMPDH: IMP dehydrogen 82.7 8.2 0.00018 35.4 8.5 118 61-189 109-231 (352)
363 PRK08745 ribulose-phosphate 3- 82.5 29 0.00063 29.6 11.3 61 73-135 133-199 (223)
364 PF06463 Mob_synth_C: Molybden 82.4 2.2 4.7E-05 33.1 4.1 71 200-271 2-84 (128)
365 PLN02540 methylenetetrahydrofo 82.4 44 0.00096 32.8 13.7 49 56-104 70-123 (565)
366 PRK13585 1-(5-phosphoribosyl)- 82.4 8.5 0.00018 33.1 8.3 70 62-135 152-222 (241)
367 cd03315 MLE_like Muconate lact 82.1 19 0.0004 31.5 10.4 83 91-175 141-240 (265)
368 cd02932 OYE_YqiM_FMN Old yello 81.9 8.6 0.00019 35.1 8.5 80 56-135 238-320 (336)
369 PF02679 ComA: (2R)-phospho-3- 81.9 8.7 0.00019 33.3 7.9 123 56-195 22-160 (244)
370 TIGR01463 mtaA_cmuA methyltran 81.8 41 0.00088 30.6 14.4 74 61-135 182-262 (340)
371 PF02219 MTHFR: Methylenetetra 81.6 20 0.00044 31.8 10.6 48 56-103 82-134 (287)
372 cd02911 arch_FMN Archeal FMN-b 81.5 9.1 0.0002 33.0 8.0 70 59-136 152-221 (233)
373 COG2875 CobM Precorrin-4 methy 81.5 7.5 0.00016 33.2 7.1 56 56-117 59-114 (254)
374 TIGR00737 nifR3_yhdG putative 81.4 41 0.00088 30.4 13.0 142 118-272 78-225 (319)
375 PRK12595 bifunctional 3-deoxy- 81.3 45 0.00098 30.8 20.2 203 57-289 130-349 (360)
376 TIGR01919 hisA-trpF 1-(5-phosp 81.2 15 0.00032 31.9 9.2 75 57-139 32-107 (243)
377 cd04723 HisA_HisF Phosphoribos 81.2 13 0.00029 31.9 8.9 75 60-139 36-111 (233)
378 COG0800 Eda 2-keto-3-deoxy-6-p 81.1 7.3 0.00016 32.8 6.9 101 56-188 22-123 (211)
379 PLN03228 methylthioalkylmalate 80.8 42 0.0009 32.5 12.9 110 56-179 202-324 (503)
380 TIGR02319 CPEP_Pphonmut carbox 80.8 18 0.00038 32.4 9.7 67 56-127 129-199 (294)
381 PRK07428 nicotinate-nucleotide 80.7 11 0.00023 33.7 8.3 65 57-135 205-271 (288)
382 PRK06801 hypothetical protein; 80.7 41 0.00089 30.0 19.9 194 56-269 26-233 (286)
383 PRK00043 thiE thiamine-phospha 80.7 32 0.00069 28.7 20.0 180 59-287 21-204 (212)
384 cd00959 DeoC 2-deoxyribose-5-p 80.5 33 0.00071 28.7 18.0 176 56-266 14-200 (203)
385 TIGR00737 nifR3_yhdG putative 80.5 26 0.00057 31.6 11.1 73 60-135 148-222 (319)
386 KOG2550 IMP dehydrogenase/GMP 80.5 8.8 0.00019 35.6 7.7 103 63-172 254-360 (503)
387 PRK06552 keto-hydroxyglutarate 80.4 35 0.00075 28.9 19.3 161 56-272 22-186 (213)
388 TIGR00736 nifR3_rel_arch TIM-b 80.1 14 0.00031 31.7 8.7 71 59-135 148-220 (231)
389 PRK11858 aksA trans-homoaconit 80.1 48 0.001 30.8 12.8 109 56-179 109-226 (378)
390 cd00945 Aldolase_Class_I Class 80.1 31 0.00067 28.2 15.4 125 57-202 11-147 (201)
391 TIGR00262 trpA tryptophan synt 79.9 30 0.00065 30.2 10.8 80 56-135 124-227 (256)
392 cd04734 OYE_like_3_FMN Old yel 79.9 14 0.0003 33.8 9.1 91 56-146 225-328 (343)
393 cd07948 DRE_TIM_HCS Saccharomy 79.8 17 0.00036 31.9 9.2 109 56-179 105-222 (262)
394 PRK11815 tRNA-dihydrouridine s 79.7 49 0.0011 30.2 13.1 85 118-204 80-171 (333)
395 cd04733 OYE_like_2_FMN Old yel 79.3 17 0.00037 33.2 9.5 81 56-136 233-323 (338)
396 cd02801 DUS_like_FMN Dihydrour 79.3 12 0.00025 31.9 8.0 74 59-136 138-214 (231)
397 cd04731 HisF The cyclase subun 79.0 12 0.00025 32.3 8.0 74 58-135 148-223 (243)
398 PF00682 HMGL-like: HMGL-like 78.9 14 0.0003 31.6 8.4 106 59-179 108-219 (237)
399 cd00381 IMPDH IMPDH: The catal 78.9 37 0.00081 30.8 11.4 69 60-136 94-164 (325)
400 PLN02334 ribulose-phosphate 3- 78.8 38 0.00082 28.9 11.0 61 73-135 140-202 (229)
401 cd00452 KDPG_aldolase KDPG and 78.7 36 0.00078 28.1 16.9 159 56-270 13-172 (190)
402 PF00977 His_biosynth: Histidi 78.7 23 0.00049 30.3 9.6 72 56-135 147-220 (229)
403 TIGR01334 modD putative molybd 78.7 14 0.00031 32.7 8.4 58 68-135 204-263 (277)
404 PRK09432 metF 5,10-methylenete 78.5 35 0.00076 30.6 11.0 47 56-102 94-142 (296)
405 COG1902 NemA NADH:flavin oxido 78.5 15 0.00034 33.8 8.9 80 56-135 234-318 (363)
406 PRK08385 nicotinate-nucleotide 78.4 16 0.00034 32.4 8.6 57 69-135 199-259 (278)
407 cd00947 TBP_aldolase_IIB Tagat 78.4 48 0.001 29.4 19.0 192 56-266 21-223 (276)
408 PRK07259 dihydroorotate dehydr 78.3 13 0.00027 33.3 8.2 79 57-135 167-263 (301)
409 TIGR00676 fadh2 5,10-methylene 78.0 48 0.001 29.2 13.0 108 56-177 70-192 (272)
410 PRK13587 1-(5-phosphoribosyl)- 77.8 16 0.00036 31.4 8.4 74 56-135 148-221 (234)
411 cd02911 arch_FMN Archeal FMN-b 77.8 45 0.00097 28.7 16.6 131 56-203 33-171 (233)
412 PF01116 F_bP_aldolase: Fructo 77.7 51 0.0011 29.4 14.5 194 56-266 25-232 (287)
413 PRK07259 dihydroorotate dehydr 77.5 28 0.0006 31.1 10.2 79 56-134 101-188 (301)
414 PRK06106 nicotinate-nucleotide 77.5 14 0.0003 32.8 7.9 65 57-136 203-267 (281)
415 PLN02591 tryptophan synthase 77.5 48 0.001 28.9 13.1 33 153-188 175-208 (250)
416 cd01572 QPRTase Quinolinate ph 77.4 12 0.00025 33.1 7.5 58 67-135 197-254 (268)
417 cd03465 URO-D_like The URO-D _ 77.3 55 0.0012 29.4 13.0 74 62-136 171-251 (330)
418 PTZ00314 inosine-5'-monophosph 77.1 32 0.0007 33.2 11.0 119 57-189 239-364 (495)
419 PRK07028 bifunctional hexulose 77.1 67 0.0015 30.4 20.8 194 54-289 11-208 (430)
420 COG2513 PrpB PEP phosphonomuta 77.1 17 0.00036 32.2 8.2 24 56-79 130-154 (289)
421 PRK09016 quinolinate phosphori 77.1 14 0.00031 32.9 7.9 58 67-135 223-280 (296)
422 cd03316 MR_like Mandelate race 77.0 19 0.00041 33.0 9.2 25 150-174 275-299 (357)
423 cd00311 TIM Triosephosphate is 77.0 49 0.0011 28.7 11.6 140 114-270 69-229 (242)
424 cd04739 DHOD_like Dihydroorota 76.8 59 0.0013 29.5 14.5 190 92-294 84-295 (325)
425 PRK14017 galactonate dehydrata 76.7 19 0.00041 33.5 9.1 84 91-174 189-287 (382)
426 TIGR01768 GGGP-family geranylg 76.7 28 0.00061 29.7 9.3 75 56-135 132-208 (223)
427 PF01207 Dus: Dihydrouridine s 76.4 21 0.00046 32.1 9.1 85 120-206 71-160 (309)
428 cd02812 PcrB_like PcrB_like pr 76.3 26 0.00056 29.9 9.0 72 55-135 131-204 (219)
429 cd06557 KPHMT-like Ketopantoat 76.1 53 0.0011 28.7 11.1 113 66-194 26-167 (254)
430 PRK08005 epimerase; Validated 76.1 23 0.00049 30.0 8.6 61 73-135 129-191 (210)
431 cd01573 modD_like ModD; Quinol 76.1 18 0.00039 32.0 8.3 66 56-135 191-258 (272)
432 COG0274 DeoC Deoxyribose-phosp 76.0 42 0.00091 28.6 10.0 179 56-266 21-209 (228)
433 PRK08091 ribulose-phosphate 3- 75.7 25 0.00054 30.2 8.8 61 73-135 141-207 (228)
434 TIGR00078 nadC nicotinate-nucl 75.7 16 0.00034 32.2 7.8 58 67-135 193-250 (265)
435 PRK06978 nicotinate-nucleotide 75.6 18 0.00039 32.3 8.1 58 68-136 221-278 (294)
436 cd02931 ER_like_FMN Enoate red 75.6 21 0.00046 33.2 9.1 94 56-149 249-351 (382)
437 cd03329 MR_like_4 Mandelate ra 75.6 44 0.00095 30.8 11.2 24 150-173 276-299 (368)
438 cd04740 DHOD_1B_like Dihydroor 75.6 21 0.00046 31.8 8.9 77 58-135 165-260 (296)
439 TIGR01235 pyruv_carbox pyruvat 75.4 35 0.00076 36.6 11.5 78 56-139 686-768 (1143)
440 PF13714 PEP_mutase: Phosphoen 75.3 19 0.00042 31.1 8.1 69 56-127 117-189 (238)
441 PRK13125 trpA tryptophan synth 75.1 54 0.0012 28.3 12.3 68 91-163 168-237 (244)
442 COG0159 TrpA Tryptophan syntha 75.0 41 0.00089 29.5 10.0 52 117-168 33-94 (265)
443 COG2513 PrpB PEP phosphonomuta 75.0 60 0.0013 28.8 13.7 158 109-269 19-186 (289)
444 PRK09427 bifunctional indole-3 74.8 81 0.0018 30.2 16.2 190 56-291 70-277 (454)
445 PRK07107 inosine 5-monophospha 74.5 15 0.00033 35.5 8.1 77 56-139 238-316 (502)
446 PRK05692 hydroxymethylglutaryl 74.5 21 0.00046 31.8 8.5 113 56-179 113-237 (287)
447 PRK06252 methylcobalamin:coenz 74.5 67 0.0015 29.1 14.1 72 62-135 183-260 (339)
448 cd02933 OYE_like_FMN Old yello 74.3 16 0.00035 33.3 7.9 87 56-147 238-328 (338)
449 cd02940 DHPD_FMN Dihydropyrimi 74.2 65 0.0014 28.8 13.0 129 57-189 111-272 (299)
450 PRK06096 molybdenum transport 74.2 22 0.00048 31.6 8.4 65 57-135 198-264 (284)
451 COG0106 HisA Phosphoribosylfor 74.1 24 0.00051 30.5 8.2 72 60-135 148-221 (241)
452 PRK12999 pyruvate carboxylase; 74.1 31 0.00067 37.1 10.8 166 56-239 688-871 (1146)
453 PRK11320 prpB 2-methylisocitra 74.0 20 0.00042 32.1 8.0 92 58-166 165-256 (292)
454 TIGR03249 KdgD 5-dehydro-4-deo 74.0 34 0.00074 30.5 9.8 76 56-135 23-106 (296)
455 PF01207 Dus: Dihydrouridine s 74.0 11 0.00024 34.0 6.6 77 57-136 136-214 (309)
456 PRK06559 nicotinate-nucleotide 73.9 21 0.00046 31.8 8.1 65 57-136 206-270 (290)
457 PRK04326 methionine synthase; 73.9 65 0.0014 29.1 11.8 117 59-193 161-285 (330)
458 PRK05718 keto-hydroxyglutarate 73.9 54 0.0012 27.8 16.7 160 56-270 24-184 (212)
459 PRK03906 mannonate dehydratase 73.8 9.1 0.0002 35.6 6.1 69 113-184 36-115 (385)
460 TIGR02660 nifV_homocitr homoci 73.7 75 0.0016 29.3 13.1 109 56-179 106-223 (365)
461 cd07945 DRE_TIM_CMS Leptospira 73.6 23 0.00049 31.5 8.4 122 56-191 108-243 (280)
462 PF00290 Trp_syntA: Tryptophan 73.5 32 0.00069 30.2 9.1 44 91-135 182-226 (259)
463 PRK01033 imidazole glycerol ph 73.5 62 0.0013 28.2 19.4 73 60-136 31-104 (258)
464 PF01884 PcrB: PcrB family; I 73.5 34 0.00073 29.4 9.0 74 56-135 136-211 (230)
465 PRK08185 hypothetical protein; 73.5 67 0.0014 28.6 20.0 186 56-266 21-225 (283)
466 PRK12737 gatY tagatose-bisphos 73.4 67 0.0015 28.6 18.2 189 56-267 26-230 (284)
467 cd00308 enolase_like Enolase-s 73.2 41 0.00088 28.6 9.7 25 151-175 181-205 (229)
468 PLN02460 indole-3-glycerol-pho 73.2 75 0.0016 29.0 13.1 178 62-277 142-325 (338)
469 TIGR02317 prpB methylisocitrat 73.0 24 0.00052 31.4 8.3 91 58-166 160-251 (285)
470 cd03174 DRE_TIM_metallolyase D 73.0 23 0.0005 30.7 8.3 125 57-195 113-246 (265)
471 cd00429 RPE Ribulose-5-phospha 72.9 53 0.0012 27.2 19.9 182 56-273 9-198 (211)
472 PRK09722 allulose-6-phosphate 72.9 31 0.00067 29.6 8.7 61 73-135 131-197 (229)
473 PRK03170 dihydrodipicolinate s 72.9 43 0.00093 29.7 10.1 77 56-136 19-104 (292)
474 cd04732 HisA HisA. Phosphorib 72.8 25 0.00055 29.9 8.4 69 62-135 149-219 (234)
475 TIGR01304 IMP_DH_rel_2 IMP deh 72.8 81 0.0018 29.3 14.7 163 91-273 117-288 (369)
476 PRK07998 gatY putative fructos 72.8 69 0.0015 28.5 17.2 191 56-269 26-229 (283)
477 cd03322 rpsA The starvation se 72.2 49 0.0011 30.5 10.6 23 151-173 250-272 (361)
478 PRK08883 ribulose-phosphate 3- 72.2 30 0.00066 29.5 8.5 61 73-135 129-195 (220)
479 cd04724 Tryptophan_synthase_al 72.2 22 0.00048 30.7 7.9 79 56-135 113-215 (242)
480 PRK09140 2-dehydro-3-deoxy-6-p 72.1 59 0.0013 27.4 19.7 161 56-272 19-182 (206)
481 TIGR01302 IMP_dehydrog inosine 72.1 35 0.00076 32.6 9.8 129 59-206 223-358 (450)
482 cd03328 MR_like_3 Mandelate ra 72.1 45 0.00097 30.6 10.3 23 151-173 271-293 (352)
483 TIGR01464 hemE uroporphyrinoge 72.0 78 0.0017 28.7 14.9 69 65-135 186-261 (338)
484 TIGR02090 LEU1_arch isopropylm 72.0 83 0.0018 29.1 13.5 108 59-179 112-222 (363)
485 cd00377 ICL_PEPM Members of th 71.8 15 0.00033 31.8 6.7 79 57-146 158-237 (243)
486 cd02930 DCR_FMN 2,4-dienoyl-Co 71.7 26 0.00056 32.2 8.6 93 56-148 221-321 (353)
487 TIGR03151 enACPred_II putative 71.7 24 0.00052 31.8 8.2 68 65-135 122-190 (307)
488 COG2896 MoaA Molybdenum cofact 71.6 45 0.00098 30.2 9.7 110 56-178 74-192 (322)
489 cd00408 DHDPS-like Dihydrodipi 71.5 54 0.0012 28.8 10.4 103 56-170 15-127 (281)
490 cd03325 D-galactonate_dehydrat 71.5 37 0.0008 31.1 9.6 109 58-173 159-285 (352)
491 PF01261 AP_endonuc_2: Xylose 71.4 21 0.00046 29.3 7.5 76 121-205 1-92 (213)
492 cd03318 MLE Muconate Lactonizi 71.3 45 0.00097 30.7 10.2 81 90-172 199-296 (365)
493 PRK07896 nicotinate-nucleotide 71.3 28 0.0006 31.1 8.3 59 68-136 215-275 (289)
494 PRK14057 epimerase; Provisiona 71.1 36 0.00078 29.7 8.8 61 73-135 155-221 (254)
495 TIGR00677 fadh2_euk methylenet 70.8 76 0.0017 28.1 13.2 108 56-177 71-196 (281)
496 PRK09389 (R)-citramalate synth 70.6 1.1E+02 0.0023 29.7 12.8 109 56-179 107-224 (488)
497 cd01568 QPRTase_NadC Quinolina 70.6 26 0.00056 30.9 8.0 65 57-135 190-255 (269)
498 TIGR01859 fruc_bis_ald_ fructo 70.6 21 0.00046 31.7 7.5 72 62-135 155-230 (282)
499 PLN02433 uroporphyrinogen deca 70.4 87 0.0019 28.6 15.7 66 67-135 187-260 (345)
500 PRK03620 5-dehydro-4-deoxygluc 70.4 49 0.0011 29.7 9.9 76 56-135 25-108 (303)
No 1
>PLN02389 biotin synthase
Probab=100.00 E-value=7.1e-57 Score=409.81 Aligned_cols=312 Identities=84% Similarity=1.272 Sum_probs=285.1
Q ss_pred hHHhhhccC-CCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 8 TLLFSISSS-MEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 8 ~~~~r~~~~-~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.+.|++++ |++|++|.++++.|++|+.+|.||+++...+.+.+.++.+++|+|++.++.+.+.|+++|+++++++...
T Consensus 67 A~~vr~~~~~~~~v~~~~i~n~~T~~C~~~C~fCaqs~~~~~~~~~~~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~ 146 (379)
T PLN02389 67 GAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV 146 (379)
T ss_pred HHHHHHHhcCCCEEEEEEEEEeccCCcCcCCCCCCCcccCCCCCcccccCCHHHHHHHHHHHHHcCCCEEEEEecccCCC
Confidence 334444444 6799999999999999999999999986544455557779999999999999999999999987766666
Q ss_pred CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 87 GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
++|..++++.++++.+|+.++++++++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.+++.|
T Consensus 147 ~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~G 226 (379)
T PLN02389 147 GRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAG 226 (379)
T ss_pred CChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcC
Confidence 77778999999999999888999999999999999999999999999999999889999998999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+++++++|+|+||+.+|+.+++.++++++.+++.++++.|+|+||||+.+.+++++.+.+++++++|+++|+..+++++|
T Consensus 227 i~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~g 306 (379)
T PLN02389 227 ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAG 306 (379)
T ss_pred CeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCcccccccc
Confidence 99999999999999999999999999996448899999999999999998888999999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCcccccchhhhhhhccC
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 319 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (320)
|..+.+..+..+|.+|||++|+|+.++|+.|+++++|.+||+++||.|....+-..+-+.||||-|.||||.|
T Consensus 307 r~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (379)
T PLN02389 307 RVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMFKELGLIPKPPSFGEDEERASEAERCEEAVSSS 379 (379)
T ss_pred ccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHHHHcCCCccccccccccccccccchHHHHhccC
Confidence 9888888889999999999999993399999999999999999999999887888899999999999999975
No 2
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-53 Score=372.93 Aligned_cols=289 Identities=55% Similarity=0.899 Sum_probs=273.4
Q ss_pred hhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 7 TTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 7 ~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
-+..+|+||+|+.|.++++|++.|++|+.+|.||+++.+++.+...++.+++|+|++.++.+++.|+.+++++++|+. .
T Consensus 35 aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~ 113 (335)
T COG0502 35 AAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-P 113 (335)
T ss_pred HHHHHHHhcCCCeEEEEEEEEeecCCCCCCCCCccccccCcCCCchhhcCCHHHHHHHHHHHHHcCCceEEEEEeccC-C
Confidence 355688999999999999999999999999999999987777777888899999999999999999999999888876 4
Q ss_pred CCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 020848 87 GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 165 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~ 165 (320)
+ ..++++.++++.+| +.+++++.+.|.++++++++|+++|+|++++.+||.++.|+.+.++++|++++++++.++++
T Consensus 114 ~--~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~ 191 (335)
T COG0502 114 G--RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREA 191 (335)
T ss_pred C--ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHc
Confidence 4 57899999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA 245 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~ 245 (320)
|++++++.|+|+||+.+|..+++..++++.. +++|+++.|+|+||||+++.++.++.+.++++|++|+++|+..|++++
T Consensus 192 Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~ 270 (335)
T COG0502 192 GIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLSA 270 (335)
T ss_pred CCccccceEecCCCCHHHHHHHHHHHHhCCC-CCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEccC
Confidence 9999999999999999999999999999975 899999999999999999999999999999999999999999999999
Q ss_pred cccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCC
Q 020848 246 GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSF 299 (320)
Q Consensus 246 g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~ 299 (320)
|++.+.+..+..+|.+|||++++|++|+|+.++..+++.+|++++|+.|..+..
T Consensus 271 gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~~~ 324 (335)
T COG0502 271 GRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELLNR 324 (335)
T ss_pred CcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHHcCCCcccccc
Confidence 999999999999999999999999999999999999999999999999998743
No 3
>PRK15108 biotin synthase; Provisional
Probab=100.00 E-value=5.7e-53 Score=382.06 Aligned_cols=297 Identities=55% Similarity=0.912 Sum_probs=265.5
Q ss_pred hHHhhhccCC-CeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 8 TLLFSISSSM-EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 8 ~~~~r~~~~~-~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.+.|+++|| ++|+++.++++.|++|+.+|.||+++.....+.+.+..+++|||++.++.+.+.|+++|++++++..+.
T Consensus 27 A~~ir~~~fg~~~v~l~~i~~~~Tn~C~~~C~yC~~~~~~~~~~~~~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~ 106 (345)
T PRK15108 27 AQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH 106 (345)
T ss_pred HHHHHHHhcCCCEEEEEEeEEEECCCcCCCCcCCCCcccCCCCCCcccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 3444444455 688999999988999999999999986443344556679999999999999999999999977653221
Q ss_pred CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 87 GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
...++++.++++.+|+.++++++++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.+++.|
T Consensus 107 --~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G 184 (345)
T PRK15108 107 --ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG 184 (345)
T ss_pred --cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcC
Confidence 236789999999999888888899999999999999999999999999999899999999999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+.+++++|+|+||+++|+.+++..+++++..+++++++.|+|.+|||+++.++.++.+.+++++++|+++|+..+++++|
T Consensus 185 ~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g 264 (345)
T PRK15108 185 IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAG 264 (345)
T ss_pred CceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeeccc
Confidence 99999999999999999999999999996446799999999999999998888899999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCccc
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANV 306 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~ 306 (320)
|+.+.++.+..+|.+|||++++|+.++|+.|.+.+++++||+++||+|++|+++|..-.+
T Consensus 265 ~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 324 (345)
T PRK15108 265 REQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQ 324 (345)
T ss_pred HhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHHcCCCcccccccccchhh
Confidence 988888888999999999999999768999999999999999999999999999988433
No 4
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.2e-51 Score=339.52 Aligned_cols=311 Identities=66% Similarity=1.070 Sum_probs=291.4
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-++-||.++.+.+|..|+++++.|++|..+|.||+++..+++++...+.+..++++++++.+++.|-++||++..|++.
T Consensus 67 ~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~ 146 (380)
T KOG2900|consen 67 AAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDM 146 (380)
T ss_pred HHHHHHhhhCCccceeeeEEEEeecCCcccccchhhhhcccccchhHHHHhhHHHHHHHHHHHHhcCCceeecchhhhhh
Confidence 34566888889999999999999999999999999999888888777777999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 020848 86 IGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA 165 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~ 165 (320)
.|....++.|+++|+.++.+|++++++.|.++.++.++|+++|+..+++.+||.++.|.++-...+|++++++|+.++++
T Consensus 147 ~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvItTRtYDdRL~Ti~nvr~a 226 (380)
T KOG2900|consen 147 KGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREA 226 (380)
T ss_pred ccchhHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhccceecccCccchhhhhcccceecchHHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~--~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
|++++++-|+|+||..+|.+-++-.+..++.+|++++|+.++|++|||+++ ..++..+++++.++.+|+.+|...|++
T Consensus 227 GikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~e~lR~IaTARIvMPKaiiRl 306 (380)
T KOG2900|consen 227 GIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDEILRTIATARIVMPKAIIRL 306 (380)
T ss_pred cceecccccccccccccceeeeeeeeccCCCCCcccccceEEecCCcccchhhcccccHHHHHHHHhhhheechHHHHHH
Confidence 999999999999999999999999999999899999999999999999987 578899999999999999999999999
Q ss_pred CCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCcCCcccccchhhhhhhccC
Q 020848 244 SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHEGEANVSEAESCQEAVSHS 319 (320)
Q Consensus 244 ~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (320)
++|+..+....+..+|.+|||++|+|++.+|+.+-+.+++..|+..+|++|.+. |.|+ +-||.|.|....|.|
T Consensus 307 aAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~-f~y~--~sse~en~ekva~a~ 379 (380)
T KOG2900|consen 307 AAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA-FKYD--RSSESENCEKVASAS 379 (380)
T ss_pred hccccccchhHHHHHHHhCCccceechhhhcCCCCCcchHHHHHHHcCCCcCcc-cccC--CCccccchhhccCCC
Confidence 999988887888999999999999999999999999999999999999999987 7665 567888898765543
No 5
>PRK08508 biotin synthase; Provisional
Probab=100.00 E-value=5.6e-47 Score=334.49 Aligned_cols=273 Identities=36% Similarity=0.602 Sum_probs=246.1
Q ss_pred CeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHH
Q 020848 18 EEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 18 ~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~ 97 (320)
|+|.+|+++++.|++|+.+|.||+++..+....+.|+.+++|+|++.++.+.+.|+++|++++++... . +..++++.+
T Consensus 2 ~~~~~~~i~~~~s~gC~~~C~FCa~~~~~~~~~~~y~~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~-~-~~~~e~~~e 79 (279)
T PRK08508 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFCLVTSGRGL-D-DKKLEYVAE 79 (279)
T ss_pred CeEEEEEEeccccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEeccCCC-C-cccHHHHHH
Confidence 68999999999999999999999998754434456776899999999999999999999996544332 2 247789999
Q ss_pred HHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 98 YVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 98 ~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
+++.+|+. ++.++.++|.++++.+++|+++|+|++++++||.++.|+.++++++|++++++++.++++|+++++++|+
T Consensus 80 i~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 80 AAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 99999954 5667788999999999999999999999999999889999998999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHH
Q 020848 176 GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQ 255 (320)
Q Consensus 176 Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~ 255 (320)
|+||+++|+.+++.++++++ +++++++.|.|.+|||+.. ++.+.++.++++|++|+++|+..|++++|++.+..+.+
T Consensus 160 GlGEt~ed~~~~l~~lr~L~--~~svpl~~~~p~~~t~~~~-~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~~~ 236 (279)
T PRK08508 160 GLGESWEDRISFLKSLASLS--PHSTPINFFIPNPALPLKA-PTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQ 236 (279)
T ss_pred ecCCCHHHHHHHHHHHHcCC--CCEEeeCCcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchhhH
Confidence 99999999999999999998 7889999999999999975 56899999999999999999999999999976556678
Q ss_pred HHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 256 ALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 256 ~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
..+|.+|||++++|+ |+|+.|++.++|.+||+++||.|..
T Consensus 237 ~~~~~~g~n~~~~g~-~lt~~g~~~~~d~~~~~~~~~~~~~ 276 (279)
T PRK08508 237 YEIFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGFEIAT 276 (279)
T ss_pred HHHHhcCCcceeecC-cccCCCCChHHHHHHHHHcCCCcCc
Confidence 999999999999999 9999999999999999999999863
No 6
>PRK06256 biotin synthase; Validated
Probab=100.00 E-value=1.8e-46 Score=341.48 Aligned_cols=288 Identities=36% Similarity=0.601 Sum_probs=255.6
Q ss_pred hHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 8 TLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.+.|++++|++|.++.++++.|++|+.+|.||+++.........++.+++|+|++.++.+.+.|+.++++++++..+..
T Consensus 43 A~~~r~~~~g~~v~~~~i~~~~s~~C~~~C~fC~~~~~~~~~~~~~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~ 122 (336)
T PRK06256 43 AYEVRKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSAGSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSG 122 (336)
T ss_pred HHHHHHHhCCCeEEEEEeeeccCCCCCCCCccCCCcCCCCCCCceecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCc
Confidence 45667788999999999999889999999999999765432223466689999999999999999999988765443322
Q ss_pred CchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 88 RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
..++++.++++.+++ .++.++++.|.++++.++.|+++|++++.+++||.+++|+.+++++++++++++++.++++|
T Consensus 123 --~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~G 200 (336)
T PRK06256 123 --KEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAG 200 (336)
T ss_pred --hHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcC
Confidence 245789999999984 46778888999999999999999999999999998889999999999999999999999999
Q ss_pred CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 167 INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 167 i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
+.+++++|+|++|+.+|+.+++.++++++ ++.++++.|+|.||||+++.++++..+++++++++|+++|+..|++++|
T Consensus 201 i~v~~~~I~GlgEt~ed~~~~~~~l~~l~--~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~g 278 (336)
T PRK06256 201 IEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGG 278 (336)
T ss_pred CeeccCeEEeCCCCHHHHHHHHHHHHhCC--CCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCc
Confidence 99999999999999999999999999998 7899999999999999998888999999999999999999999999999
Q ss_pred ccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCCCCCCc
Q 020848 247 RVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 247 ~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
++....+.+..+| +|||++++|+ |+|+.|.+.+++.+||+++||.|..++.++
T Consensus 279 r~~~~~~~~~~~~-~g~~~~~~g~-~lt~~g~~~~~d~~~~~~~g~~~~~~~~~~ 331 (336)
T PRK06256 279 REVNLRSLQPLGL-GGANSVIVGN-YLTTVGQPATADLDMIEDLGFEIELDALKA 331 (336)
T ss_pred hhhhchhhHHHHh-ccCceeeECC-cccCCCCChHHHHHHHHHCCCCcccCcchh
Confidence 9655566778888 8999999999 999999999999999999999997776543
No 7
>PRK08444 hypothetical protein; Provisional
Probab=100.00 E-value=3.2e-46 Score=337.37 Aligned_cols=287 Identities=16% Similarity=0.214 Sum_probs=247.8
Q ss_pred HhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 10 LFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 10 ~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.|++++|++|+++ .++| +||.|..+|.||+|++... ....|. +++|||++.++.+.+.|+++|+|+||.++.
T Consensus 35 ~vR~~~~G~~Vt~~~n~~In-~TN~C~~~C~FCaf~~~~~-~~~~y~-ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~-- 109 (353)
T PRK08444 35 KKRTKLHGKKVYFNVNRHIN-PTNICADVCKFCAFSAHRK-NPNPYT-MSHEEILEIVKNSVKRGIKEVHIVSAHNPN-- 109 (353)
T ss_pred HHHHHhcCCEEEEEecCCcc-cccccccCCccCCCccCCC-CCcccc-CCHHHHHHHHHHHHHCCCCEEEEeccCCCC--
Confidence 34456779999987 7888 5999999999999987543 223454 899999999999999999999999886653
Q ss_pred CchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCCCH
Q 020848 88 RKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTRSY 152 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~~~ 152 (320)
..++++.++++.+|+. ++.+.. +.|...++.+++|+++|++++.. +.|.+ +++++.+++++.+
T Consensus 110 --~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~ 187 (353)
T PRK08444 110 --YGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVS 187 (353)
T ss_pred --CCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCC
Confidence 2568899999999953 566665 67888999999999999999998 69999 9999999997755
Q ss_pred -HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCCCCCCHHHHHH
Q 020848 153 -DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWEMIR 227 (320)
Q Consensus 153 -~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~~~~~~~e~~~ 227 (320)
++|++.++.|+++|+++++++|+|++||++|+.+++..+++++ .++++|+.|+|+ +|||++..++++..+.++
T Consensus 188 ~~~~~~i~~~a~~~Gi~~~sg~l~G~gEt~edrv~hl~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr 265 (353)
T PRK08444 188 SERWLEIHKYWHKKGKMSNATMLFGHIENREHRIDHMLRLRDLQ--DKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILK 265 (353)
T ss_pred HHHHHHHHHHHHHcCCCccceeEEecCCCHHHHHHHHHHHHHhc--cccCCceEEEecccCCCCCcCCCCCCCCHHHHHH
Confidence 7888888999999999999999999999999999999999998 789999999999 899998888899999999
Q ss_pred HHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcCCCC
Q 020848 228 MIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 228 ~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~~~~ 298 (320)
++|++|+++|+ +-++.+.|...+....+.++.+|||++ +.++.+.... ..+.+++.++|+++|++|++|+
T Consensus 266 ~iAi~Rl~L~~-i~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p~~R~ 344 (353)
T PRK08444 266 TIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFIPVERD 344 (353)
T ss_pred HHHHHHHhcCC-CCccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCCeeeec
Confidence 99999999987 335667798888888899999999998 4455454433 3679999999999999999999
Q ss_pred CCcCCccc
Q 020848 299 FHEGEANV 306 (320)
Q Consensus 299 ~~~~~~~~ 306 (320)
+.|+.+++
T Consensus 345 t~y~~~~~ 352 (353)
T PRK08444 345 SLYNELKK 352 (353)
T ss_pred CCCCeecc
Confidence 99999864
No 8
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=100.00 E-value=2.5e-43 Score=320.71 Aligned_cols=286 Identities=18% Similarity=0.241 Sum_probs=239.6
Q ss_pred hHHhhhccCCCeeEEEE--EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 8 TLLFSISSSMEEVQQCT--LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~--~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+...|++++|++|+++. .++ +|++|+.+|.||+++.... ....+. +++|+|++.++.+.+.|+++|+|+||..+.
T Consensus 23 A~~ir~~~~g~~v~~~~~~~i~-~T~~C~~~C~FC~~~~~~~-~~~~y~-ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~ 99 (343)
T TIGR03551 23 ADELRRDIVGDTVTYVVNRNIN-FTNVCYGGCGFCAFRKRKG-DADAYL-LSLEEIAERAAEAWKAGATEVCIQGGIHPD 99 (343)
T ss_pred HHHHHHHhcCCeEEEEeeeccc-cccccccCCccCCCccCCC-CCCccc-CCHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 34456678899999743 455 5999999999999976422 223354 899999999999999999999999764322
Q ss_pred CCCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
...+.+.++++.+|+. ++.++. +.|.++++.+++|++||++++.. +.|++ +++++.+++++
T Consensus 100 ----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~ 175 (343)
T TIGR03551 100 ----LDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDK 175 (343)
T ss_pred ----CCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCC
Confidence 2467788888888854 455432 57889999999999999999984 67888 89999999875
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCC----CCCCC
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQD----QKPVE 221 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~----~~~~~ 221 (320)
++++++++++.++++|+++++++|+|++|+.+|+.+++.++++++ ++..+|..|+|+| |||+.+ .++++
T Consensus 176 ~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~--~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~ 253 (343)
T TIGR03551 176 LSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQ--EETGGFTEFVPLPFVHYNAPLYLKGMARPGPT 253 (343)
T ss_pred CCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhh--HHhCCeeEEEeccccCCCCccccccCCCCCCC
Confidence 999999999999999999999999999999999999999999998 6788999999977 999964 24578
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCC
Q 020848 222 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGL 292 (320)
Q Consensus 222 ~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~ 292 (320)
.++.++++|++|+++|+..++++++|..+++..+..+|.+|||++ +..+++.... ..+.++++++|+++||
T Consensus 254 ~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~ 333 (343)
T TIGR03551 254 GREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGR 333 (343)
T ss_pred HHHHHHHHHHHHHhCCCcccCeeccccccCHHHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCC
Confidence 999999999999999999889999998887776789999999998 3445444333 4688999999999999
Q ss_pred CcCCCCCCcC
Q 020848 293 TPKAPSFHEG 302 (320)
Q Consensus 293 ~p~~~~~~~~ 302 (320)
+|++|+++|+
T Consensus 334 ~~~~r~~~y~ 343 (343)
T TIGR03551 334 IPKQRTTLYE 343 (343)
T ss_pred CeeecCCCCC
Confidence 9999999996
No 9
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=100.00 E-value=2.9e-43 Score=320.69 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=241.3
Q ss_pred hhHHhhhccC-CCeeEEEEEeec-ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 7 TTLLFSISSS-MEEVQQCTLLSI-KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 7 ~~~~~r~~~~-~~~v~~~~~l~~-~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
-+.+.|++++ |++|+++...++ +|++|+.+|.||+++... ....+..+++|+|++.++.+.+.|+++|+|+||..+
T Consensus 23 ~A~~vr~~~~~g~~v~~~~~~~i~~s~~C~~~C~fC~~~~~~--~~~~~~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p 100 (340)
T TIGR03699 23 LADEVRRRRHPGNIVTFVVDRNINYTNICVVGCKFCAFYRAP--GHPEGYVLSVEEILQKIEELVAYGGTQILLQGGVNP 100 (340)
T ss_pred HHHHHHHHhcCCCeEEEEeecccccchhhccCCccCCcccCC--CCccccCCCHHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3455666888 999998765444 699999999999976432 212244589999999999999999999999877533
Q ss_pred CCCCchhHHHHHHHHHHhhhcC--ce-----------EEEeCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCC
Q 020848 85 TIGRKTNFNQILEYVKDIRDMG--ME-----------VCCTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT 149 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~~--~~-----------i~~~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~ 149 (320)
. ...+.+.++++.+++.+ +. ++.++|.++++.+++|+++|++++.. +.|+. +++++.+.++
T Consensus 101 ~----~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~ 176 (340)
T TIGR03699 101 D----LGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK 176 (340)
T ss_pred C----CCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC
Confidence 2 24566777888877432 32 23356877899999999999999985 79999 8999998765
Q ss_pred -CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCCCCCCHHH
Q 020848 150 -RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQKPVEIWE 224 (320)
Q Consensus 150 -~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~~~~~~~e 224 (320)
.++++++++++.++++|+++++++|+|+||+++|+.+++.++++++ .+.+.|..|+|. +|||+++.+++++++
T Consensus 177 ~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~--~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e 254 (340)
T TIGR03699 177 KISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQ--DKTGGFTAFIPWTFQPGNTELGKKRPATSTE 254 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeecccCCCCcccCCCCCCHHH
Confidence 5899999999999999999999999999999999999999999998 677788888885 599999888899999
Q ss_pred HHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCCCCCh----hHHHHHHHHcCCCcCCC
Q 020848 225 MIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDF----DADQLMFKVLGLTPKAP 297 (320)
Q Consensus 225 ~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~----~~~~~~i~~~G~~p~~~ 297 (320)
.++++|++|+++|+ .+++++||..+..+.+..+|.+|||++ +..+.+.++.|.+. +++++||+++|++|++|
T Consensus 255 ~l~~iA~~Rl~lp~-~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g~~~~~r 333 (340)
T TIGR03699 255 YLKVLAISRIFLDN-IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEENVVAAAGATHRASREEIIRIIREAGFIPAQR 333 (340)
T ss_pred HHHHHHHHHHcCCC-CCcccCCccccChHHHHHHHhcCCccCCCccccccccccCCCCCCCCHHHHHHHHHHcCCCeeee
Confidence 99999999999998 788999998888777889999999993 44444888888776 99999999999999999
Q ss_pred CCCcCCc
Q 020848 298 SFHEGEA 304 (320)
Q Consensus 298 ~~~~~~~ 304 (320)
++.|+.+
T Consensus 334 ~~~y~~~ 340 (340)
T TIGR03699 334 DTLYNIL 340 (340)
T ss_pred cCccccC
Confidence 9999864
No 10
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=100.00 E-value=3e-43 Score=320.68 Aligned_cols=286 Identities=17% Similarity=0.232 Sum_probs=241.1
Q ss_pred HHhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 9 LLFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 9 ~~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
.+.|++++|+.|+++ .+++ +|++|+.+|.||+++.... ....|. +++|||++.++.+.+.|++++++++|..+.
T Consensus 33 ~~vr~~~~g~~v~~~~~~~in-~Tn~C~~~C~FCa~~~~~~-~~~~y~-l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~- 108 (351)
T TIGR03700 33 ALVRERKHGDKVYFNVNRHLN-YTNICVNGCAFCAFQRERG-EPGAYA-MSLEEIVARVKEAYAPGATEVHIVGGLHPN- 108 (351)
T ss_pred HHHHHHhcCCeEEEeccCCcc-cccccccCCccCceeCCCC-CcccCC-CCHHHHHHHHHHHHHCCCcEEEEecCCCCC-
Confidence 345557789999987 7788 8999999999999986433 223454 899999999999999999999999875442
Q ss_pred CCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeec-cCcccc-HHHHhhhCCCC-
Q 020848 87 GRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR- 150 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~~~- 150 (320)
..++++.++++.+|+. ++.+.. ..|.++++.+++|+++|++++. .++|+. +++++.+++++
T Consensus 109 ---~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~ 185 (351)
T TIGR03700 109 ---LPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKI 185 (351)
T ss_pred ---CCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCC
Confidence 3468899999999854 354432 3577889999999999999998 489999 99999999865
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCCC--CCCCHHH
Q 020848 151 SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQDQ--KPVEIWE 224 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~~--~~~~~~e 224 (320)
++++++++++.++++|+++++++|+|+|||++|+.+++..+++++ .++.+|..|+|++ |||++.. ++++..+
T Consensus 186 ~~~~~l~~i~~a~~~Gi~~~sg~i~GlgEt~edrv~~l~~Lr~l~--~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e 263 (351)
T TIGR03700 186 SAERWLEIHRTAHELGLKTNATMLYGHIETPAHRVDHMLRLRELQ--DETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLD 263 (351)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeeCCCCHHHHHHHHHHHHHhh--HhhCCceEEEeecccCCCCcccCCCCCCCCHHH
Confidence 678999999999999999999999999999999999999999998 6788999999994 9999876 7799999
Q ss_pred HHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcC
Q 020848 225 MIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 225 ~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~ 295 (320)
.++++|++|+++|+ +..+.+.|...+++....++.+|||++ +.++.+.... .++.+++.++|+++|++|+
T Consensus 264 ~lr~iA~~Rl~l~~-i~~i~a~w~~~~~~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p~ 342 (351)
T TIGR03700 264 DLKTLAVSRLYLDN-IPHIKAYWVMLGLKLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVPV 342 (351)
T ss_pred HHHHHHHHHHhcCC-CCcccccccccCHHHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCee
Confidence 99999999999997 445666788878888899999999998 3344443322 3578999999999999999
Q ss_pred CCCCCcCCc
Q 020848 296 APSFHEGEA 304 (320)
Q Consensus 296 ~~~~~~~~~ 304 (320)
+|++.|+++
T Consensus 343 ~r~~~y~~~ 351 (351)
T TIGR03700 343 ERDTLYNEV 351 (351)
T ss_pred eecCCCCcC
Confidence 999999874
No 11
>PRK07360 FO synthase subunit 2; Reviewed
Probab=100.00 E-value=3e-43 Score=322.47 Aligned_cols=291 Identities=19% Similarity=0.253 Sum_probs=242.2
Q ss_pred hHHhhhccCCCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 8 TLLFSISSSMEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+...|++++|++|+++ ..++ +|+.|+.+|.||+++... ...+.|. ++.|||++.++.+.+.|+++|+|+||..+.
T Consensus 44 A~~ir~~~~G~~v~~~~~~~i~-~Tn~C~~~C~fC~~~~~~-~~~~~y~-ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~ 120 (371)
T PRK07360 44 ADRLRKEQVGDTVTYVVNRNIN-FTNICEGHCGFCAFRRDE-GDHGAFW-LTIAEILEKAAEAVKRGATEVCIQGGLHPA 120 (371)
T ss_pred HHHHHHHhcCCeEEEEeccCcc-cchhhhcCCccCCcccCC-CCCCCee-CCHHHHHHHHHHHHhCCCCEEEEccCCCCC
Confidence 4456668889999874 3455 599999999999998753 2344555 999999999999999999999999775432
Q ss_pred CCCchhHHHHHHHHHHhhhc--CceEEE-----------eCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GMEVCC-----------TLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~i~~-----------~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
. ...+++.++++.+|+. ++.+.. +.|.++++.+++|++||++++.- +.+.. +++++.+++++
T Consensus 121 ~---~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~ 197 (371)
T PRK07360 121 A---DSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEK 197 (371)
T ss_pred C---CcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCC
Confidence 2 1368889999999853 455543 56888999999999999999973 45556 67887888754
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCCCCCCC----CCC
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTPLQDQK----PVE 221 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~~~~~~----~~~ 221 (320)
+.++++++++.++++|+++++++|+|+||+.+|+.+++.++++++ +++.+|..|+|++ |||++... +.+
T Consensus 198 ~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~--~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~ 275 (371)
T PRK07360 198 IKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQ--QETGGITEFVPLPFVHENAPLYERGRVKGGAP 275 (371)
T ss_pred CCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhc--hhhCCeeEEEeccccCCCCccccccccCCCCC
Confidence 899999999999999999999999999999999999999999998 7889999999965 99997643 246
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCCC------CChhHHHHHHHHcCC
Q 020848 222 IWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN------NDFDADQLMFKVLGL 292 (320)
Q Consensus 222 ~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~------~~~~~~~~~i~~~G~ 292 (320)
..+.++++|++|+++|+..++++++|..+++..+..+|.+|||++ ++++.+.+..| ++.+++.+||+++||
T Consensus 276 ~~~~lr~iAi~Rl~lp~~~~~i~a~~~~lg~~~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G~ 355 (371)
T PRK07360 276 GLEDLLLYAVSRIFLGNWIKNIQASWVKLGLKLAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIGR 355 (371)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeccceeeCHHHHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcCC
Confidence 777799999999999998889999997777776778999999999 77774444343 689999999999999
Q ss_pred CcCCCCCCcCCccc
Q 020848 293 TPKAPSFHEGEANV 306 (320)
Q Consensus 293 ~p~~~~~~~~~~~~ 306 (320)
+|++|+++|+.+.+
T Consensus 356 ~~~~r~~~y~~~~~ 369 (371)
T PRK07360 356 IPKQRDTLYEIIEV 369 (371)
T ss_pred ceeeecCCcchhcc
Confidence 99999999999865
No 12
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=100.00 E-value=4.3e-42 Score=307.95 Aligned_cols=275 Identities=51% Similarity=0.856 Sum_probs=234.7
Q ss_pred ccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHH
Q 020848 14 SSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFN 93 (320)
Q Consensus 14 ~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~ 93 (320)
+++|+.|.++.++++.|++|+++|.||+++..+..+...++.+++++++++++.+.+.|++.+++++++..+.. ....+
T Consensus 20 ~~~~~~v~~~~~~~i~s~~C~~~C~fC~~~~~~~~~~~~~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~-~~~~~ 98 (296)
T TIGR00433 20 HFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKD-REFME 98 (296)
T ss_pred hcCCCEEEEEEEEecccCCCCCCCcCCCCcccCCCCCccccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCCh-HHHHH
Confidence 36799999999999889999999999998764322233456689999999999988899999887554333222 12234
Q ss_pred HHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE
Q 020848 94 QILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 94 ~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
.+.++.+.+++.++.+.++.|.++++.++.|+++|++.+.+++|+.+++|+.+++++++++++++++.++++|+++.+++
T Consensus 99 ~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 99 YVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeE
Confidence 44445444556788888888999999999999999999999999339999999988999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccc-ccCh
Q 020848 174 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRV-RFSM 252 (320)
Q Consensus 174 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~-~~~~ 252 (320)
|+|++++.+|+.++++++.+++ ++.++++.|+|.|||++++.++++.++.+++++.+|+++|+..+++++++. .+..
T Consensus 179 i~Gl~et~~d~~~~~~~l~~l~--~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~ 256 (296)
T TIGR00433 179 IFGLGETVEDRIGLALALANLP--PESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRE 256 (296)
T ss_pred EEeCCCCHHHHHHHHHHHHhCC--CCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhh
Confidence 9999999999999999999998 788999999999999999988899999999999999999999888887764 5554
Q ss_pred hHHHHHHHcCCceEeeCCccccCCCCChh-HHHHHHHHcCC
Q 020848 253 PEQALCFLAGANSIFTGEKLLTTPNNDFD-ADQLMFKVLGL 292 (320)
Q Consensus 253 ~~~~~~~~~Gan~~~~~~~~~~~~~~~~~-~~~~~i~~~G~ 292 (320)
..+..++.+|||.++.|+ |+|+.|+++. ++.+|++++||
T Consensus 257 ~~~~~~l~~G~n~i~~g~-~~~~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 257 LQQAMCFMAGANSIFVGD-YLTTTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred hHHHHHHHhcCceEEEcC-cccCCCCCCcHHHHHHHHHcCC
Confidence 444459999999999998 9999999999 99999999997
No 13
>PRK08445 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=314.14 Aligned_cols=287 Identities=15% Similarity=0.195 Sum_probs=233.5
Q ss_pred HhhhccCCCeeEE---EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 10 LFSISSSMEEVQQ---CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 10 ~~r~~~~~~~v~~---~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
+.|++++|+.|.+ +.+++ +|++|+.+|.||++++..... +.| .+++|+|++.++.+.+.|.++|+++||..+.
T Consensus 27 ~vr~~~~g~~v~~~~~~~~in-~Tn~C~~~C~FCa~~~~~~~~-~~y-~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~- 102 (348)
T PRK08445 27 ERKQELHPEKITTFIVDRNIN-YTNICWVDCKFCAFYRHLKED-DAY-ILSFEEIDKKIEELLAIGGTQILFQGGVHPK- 102 (348)
T ss_pred HHHHHHcCCcEEEEecccccc-cccccccCCccCCCccCCCCC-CCe-eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-
Confidence 4455777888875 44588 599999999999998754322 445 5899999999999999999999998865432
Q ss_pred CCchhHHHHHHHHHHhhhc--CceEEE----------eCCCC-CHHHHHHHHHhccCeec-cCcccc-HHHHhhhCC-CC
Q 020848 87 GRKTNFNQILEYVKDIRDM--GMEVCC----------TLGML-EKHQAIELKKAGLTAYN-HNLDTS-REFYSKIIT-TR 150 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~--~~~i~~----------~~g~l-~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~-~~ 150 (320)
...+++.++++.+++. ++.+.. +.+.+ .++.+++|+++|++++. .++|+. +++++.+++ +.
T Consensus 103 ---~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~ 179 (348)
T PRK08445 103 ---LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKL 179 (348)
T ss_pred ---CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCC
Confidence 3567888888888854 244321 21233 48999999999999997 689999 899999976 56
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee----ecCCCCCCCC----CCCCH
Q 020848 151 SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL----AVKGTPLQDQ----KPVEI 222 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~----p~~gt~~~~~----~~~~~ 222 (320)
+.++++++++.++++|+++++++|+|++|+++|+.+++..+++++ .++.+|..|+ +.+|||+... ++++.
T Consensus 180 t~~~~i~~i~~a~~~Gi~~~sg~i~G~~Et~edr~~~l~~lreLq--~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~ 257 (348)
T PRK08445 180 DSDRWLEVHRQAHLIGMKSTATMMFGTVENDEEIIEHWERIRDLQ--DETGGFRAFILWSFQPDNTPLKEEIPEIKKQSS 257 (348)
T ss_pred CHHHHHHHHHHHHHcCCeeeeEEEecCCCCHHHHHHHHHHHHHHH--HHhCCeeEEeccccCCCCCcccccCCCCCCCCH
Confidence 889999999999999999999999999999999999999999998 5565555554 3379998743 45889
Q ss_pred HHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC----CCChhHHHHHHHHcCCCcC
Q 020848 223 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP----NNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 223 ~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~----~~~~~~~~~~i~~~G~~p~ 295 (320)
.+.++++|++|+++|+ +.+++++|..++...+..+|.+|||++ +.++++...+ +.+.++++++|+++|+.|+
T Consensus 258 ~e~Lr~iAv~Rl~l~~-~~~i~a~~~~~g~~~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~~~~~~~~~~i~~~g~~p~ 336 (348)
T PRK08445 258 NRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGASFRMNQAEMIELIKDIGEIPA 336 (348)
T ss_pred HHHHHHHHHHHHhCCC-CCCccCCCcccCHHHHHHHHhcCCccCccccccccchhccCCCCCCCHHHHHHHHHHcCCCee
Confidence 9999999999999998 677888898777777789999999998 4455554433 3578999999999999999
Q ss_pred CCCCCcCCccc
Q 020848 296 APSFHEGEANV 306 (320)
Q Consensus 296 ~~~~~~~~~~~ 306 (320)
+||++|+++.+
T Consensus 337 ~r~t~y~~~~~ 347 (348)
T PRK08445 337 KRNTAYEILER 347 (348)
T ss_pred eecCCCCeeec
Confidence 99999999853
No 14
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=1e-42 Score=318.77 Aligned_cols=286 Identities=19% Similarity=0.264 Sum_probs=240.4
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-+.+.|++++|++|+++.++++ |+.|+.+|.||+++.... ... ..+++|||++.++.+.+.|+++|+|+||.++.
T Consensus 58 ~~A~~ir~~~~G~~v~l~~~in~-Tn~C~~~C~YC~f~~~~~--~~~-~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~ 133 (371)
T PRK09240 58 QKAQRLTRQRFGNTISLYTPLYL-SNYCANDCTYCGFSMSNK--IKR-KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA 133 (371)
T ss_pred HHHHHHHHHHcCCEEEEEeceEE-cccccCcCCcCCCCCCCC--Ccc-ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 33455666888999999999995 999999999999976432 233 56999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHH
Q 020848 86 IGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKH 161 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~ 161 (320)
...++++.++++.+++...++.++.+.++.+.++.|+++|++++++++||+ ++.|+.+++ ++++++++++++.
T Consensus 134 ---~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~ 210 (371)
T PRK09240 134 ---KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPER 210 (371)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHH
Confidence 136789999999998543235556688999999999999999999999999 999999974 6799999999999
Q ss_pred HHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCC----CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhC
Q 020848 162 VREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 162 a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~ 236 (320)
++++|++ +++++|+|+|++.+|+.+++..+++|+.. ..+|+|+.|+|++| ++.+.+++++.+++++++.+|+++
T Consensus 211 a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~~Rl~l 289 (371)
T PRK09240 211 AGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFL 289 (371)
T ss_pred HHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCC-CCCCCCCCCHHHHHHHHHHHHHHC
Confidence 9999996 99999999999999999988888777521 24789999999999 999888999999999999999999
Q ss_pred CCceeecCCccc-ccChh---HHHHHHHcCCceEeeCCccccC----------CCCChhHHHHHHHHcCCCcCCCCCCc
Q 020848 237 PKAMVRLSAGRV-RFSMP---EQALCFLAGANSIFTGEKLLTT----------PNNDFDADQLMFKVLGLTPKAPSFHE 301 (320)
Q Consensus 237 p~~~i~~~~g~~-~~~~~---~~~~~~~~Gan~~~~~~~~~~~----------~~~~~~~~~~~i~~~G~~p~~~~~~~ 301 (320)
|+..|++++|++ .+.+. .+...+.+| |+.++|+ |+|+ ++++++++++||+++||+|+.-|.++
T Consensus 290 P~~~i~~s~g~~~~lrd~~~~~~~~~~~ag-~~~~~G~-y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~~~~~~~~ 366 (371)
T PRK09240 290 PDVEISLSTRESPEFRDNLIPLGITKMSAG-SSTQPGG-YADDHKELEQFEISDDRSVEEVAAALRAKGLQPVWKDWDS 366 (371)
T ss_pred cccccEEecCCCHHHHHHHHhhcceeeccC-ccCCCCC-cCCCCCCcCCccCCCCCCHHHHHHHHHHCCCeeccchhhh
Confidence 999999999885 33321 223456665 8888887 8877 68999999999999999998877653
No 15
>PRK05926 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=308.48 Aligned_cols=282 Identities=18% Similarity=0.199 Sum_probs=235.1
Q ss_pred chhHHhhhccCCCeeEEEEEeec-ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSI-KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~-~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
|+.+ |++++|+.|+++.++++ +||.|..+|.||+|... ++.+.++.+++|||++.++.+ ..|+++|+|++|.++
T Consensus 52 A~~i--R~~~~G~~V~~~~~~nin~Tn~C~~dC~FCaf~~~--~~~~~~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p 126 (370)
T PRK05926 52 ADLI--RANRVGDTVYYSSTLYLYPTNFCQFNCTFCSFYAK--PGDPKGWFYTPDQLVQSIKEN-PSPITETHIVAGCFP 126 (370)
T ss_pred HHHH--HHHhcCCeEEEEEeeeeecCCCCCCCCCccccccC--CCCcccccCCHHHHHHHHHHH-hcCCCEEEEEeCcCC
Confidence 4444 45678999999999886 89999999999998753 233456669999999999988 689999999987543
Q ss_pred CCCCchhHHHHHHHHHHhhhc--CceEEEeC-----------CCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCC
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GMEVCCTL-----------GMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITT 149 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~-----------g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~ 149 (320)
. ..++++.++++.+|+. ++.+.... +..+++.+++|+++|++++.+ +.|+. ++.++.++++
T Consensus 127 ~----~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 127 S----CNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred C----CCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 2 3568889999999854 46544322 346788899999999999997 59999 8899988875
Q ss_pred C-CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCC----CCCC
Q 020848 150 R-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQD----QKPV 220 (320)
Q Consensus 150 ~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~----~~~~ 220 (320)
. +.++|+++++.++++|+++++++|+|+||+++|+++++..+++++ .++++|.+|+|+ ++|++.. .+..
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt~edrv~~l~~Lr~Lq--~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~ 280 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLRALQ--DKTSGFKNFILLKFASENNALGKRLRKMGSR 280 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccCceEEeCCCCHHHHHHHHHHHHhcC--CccCCeeeeEecccCCCCCcccccccccCCC
Confidence 4 789999999999999999999999999999999999999999998 789999999994 4888753 2357
Q ss_pred CHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcC
Q 020848 221 EIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLG 291 (320)
Q Consensus 221 ~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G 291 (320)
+..+.++++|++|+++++ +..+...|..++....+.++.+|||++ +.++++.... ..+++++.++|+++|
T Consensus 281 ~~~~~lr~~AvaRl~l~n-~~~iqa~w~~~G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g 359 (370)
T PRK05926 281 HSIPPASIIAVARLFLDN-FPNIKALWNYLGIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQG 359 (370)
T ss_pred ChHHHHHHHHHHHHhcCC-CcccccCchhcCHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcC
Confidence 788899999999999987 566778898888778889999999998 4455554433 357899999999999
Q ss_pred CCcCCCCC
Q 020848 292 LTPKAPSF 299 (320)
Q Consensus 292 ~~p~~~~~ 299 (320)
++|++||+
T Consensus 360 ~~p~~rd~ 367 (370)
T PRK05926 360 RIPCLTNS 367 (370)
T ss_pred CCceecCC
Confidence 99999987
No 16
>PRK05927 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=306.53 Aligned_cols=287 Identities=16% Similarity=0.125 Sum_probs=236.1
Q ss_pred HHhhhccC-CCeeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 9 LLFSISSS-MEEVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 9 ~~~r~~~~-~~~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
.+.|++++ |+.|+++ ..++ +|+.|+.+|.||+|+.... ....| .+++|||++.++.+.+.|+++++|+||.++.
T Consensus 29 ~~iR~~~~~G~~V~~i~n~~i~-~Tn~C~~~C~fCaf~~~~~-~~~~y-~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~ 105 (350)
T PRK05927 29 DSLRKQRYPQNTVTYVLDANPN-YTNICKIDCTFCAFYRKPH-SSDAY-LLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ 105 (350)
T ss_pred HHHHHHHcCCCeEEEEcccCCc-cchhhhcCCccCCccCCCC-Ccccc-ccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 34455666 7999854 3444 5999999999999986432 22334 5999999999999999999999999876532
Q ss_pred CCCchhHHHHHHHHHHhhhc--Cce-----------EEEeCCCCCHHHHHHHHHhccCeecc-Ccccc-HHHHhhhCCCC
Q 020848 86 IGRKTNFNQILEYVKDIRDM--GME-----------VCCTLGMLEKHQAIELKKAGLTAYNH-NLDTS-REFYSKIITTR 150 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~--~~~-----------i~~~~g~l~~e~l~~L~~aGld~v~i-~let~-~~~~~~i~~~~ 150 (320)
..++++.++++.+|+. ++. ++.+.|.++++.+++|+++|++++.. ++|++ +++++.+++++
T Consensus 106 ----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k 181 (350)
T PRK05927 106 ----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALERLWDAGQRTIPGGGAEILSERVRKIISPKK 181 (350)
T ss_pred ----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCC
Confidence 4578899999999842 342 24557999999999999999999998 89999 78888888766
Q ss_pred -CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCCCC--CCCCHH
Q 020848 151 -SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQDQ--KPVEIW 223 (320)
Q Consensus 151 -~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~~~--~~~~~~ 223 (320)
++++|+++++.|++.|+++++++|+|+|||++|+.+++..+++++ .+...|..|+|+ ++||++.. ++++.+
T Consensus 182 ~~~~~rl~~i~~A~~lGi~~~sg~l~G~gEt~e~ri~~l~~Lr~lq--d~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~ 259 (350)
T PRK05927 182 MGPDGWIQFHKLAHRLGFRSTATMMFGHVESPEDILLHLQTLRDAQ--DENPGFYSFIPWSYKPGNTALGRRVPHQASPE 259 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCcCceeEEeeCCCHHHHHHHHHHHHHhh--HhhCCeeeeeecCcCCCCCccccCCCCCCCHH
Confidence 579999999999999999999999999999999999999999998 455678888887 58998753 268999
Q ss_pred HHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEe---eCCccccCCC----CChhHHHHHHHHcCCCcCC
Q 020848 224 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPN----NDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 224 e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~----~~~~~~~~~i~~~G~~p~~ 296 (320)
+.++++|++|+++|+.. .+.+.|...+....+.++.+|||++. +.+.+....+ .+.+++.++|+++|++|++
T Consensus 260 e~Lr~iAv~Rl~lp~~~-~i~~~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~~~~~~l~~~i~~~G~~~~~ 338 (350)
T PRK05927 260 LYYRILAVARIFLDNFD-HIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQSSEEEICAMILSEGFIPVE 338 (350)
T ss_pred HHHHHHHHHHHhCCCCC-cccCCccccCHHHHHHHHhCCCccccCCCccceeeccCCCCCcCCHHHHHHHHHHcCCCeee
Confidence 99999999999999744 45667887777777889999999983 4454544443 3589999999999999999
Q ss_pred CCCCcCCcc
Q 020848 297 PSFHEGEAN 305 (320)
Q Consensus 297 ~~~~~~~~~ 305 (320)
|++.|+.+.
T Consensus 339 R~~~Y~~~~ 347 (350)
T PRK05927 339 RNTFYRPIS 347 (350)
T ss_pred ecCCCcccc
Confidence 999999874
No 17
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=100.00 E-value=4.2e-41 Score=307.83 Aligned_cols=283 Identities=19% Similarity=0.233 Sum_probs=235.3
Q ss_pred hHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 8 TLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 8 ~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
+.+.|++++|++|+++.+++ .|+.|+++|.||+++... ..++ ..+++|||.+.++.+.+.|+++|+++||..+..
T Consensus 59 A~~ir~~~~G~~v~l~~~i~-~Tn~C~~~C~yC~~s~~~--~~~~-~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~- 133 (366)
T TIGR02351 59 AKKLTRKRFGNTISLFTPLY-LSNYCSNKCVYCGFSMSN--KIKR-KKLNEEEIEREIEAIKKSGFKEILLVTGESEKA- 133 (366)
T ss_pred HHHHHHHHcCCEEEEEeeee-ECccccCCCCcCCCCCCC--CCcc-CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCC-
Confidence 44466678899999999999 899999999999997643 2334 558999999999999999999999997654322
Q ss_pred CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhC---CCCCHHHHHHHHHHHH
Q 020848 88 RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKII---TTRSYDERLETLKHVR 163 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~---~~~~~~~~l~~i~~a~ 163 (320)
..++++.++++.+++....+.+..+.++.+.+++|+++|++++++++||+ ++.|+.++ +++++++++++++.++
T Consensus 134 --~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~ 211 (366)
T TIGR02351 134 --AGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAA 211 (366)
T ss_pred --CCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHH
Confidence 35788999999998542222334457999999999999999999999999 99999988 5779999999999999
Q ss_pred HcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCC----CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 164 EAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTH----PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 164 ~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~----~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
++|++ +++++|+|++++.+|..+++..+++++.. ..+|+++.++|.+| ++....++++.+++++++.+|+++|+
T Consensus 212 ~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~~R~~~P~ 290 (366)
T TIGR02351 212 KAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTN-GLKPKVIVTDRELVQIICAYRLFDPF 290 (366)
T ss_pred HcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccccccccccCCC-CCCCCCcCCHHHHHHHHHHHHHhCcc
Confidence 99998 99999999999999998888777776531 26899999999999 99888889999999999999999999
Q ss_pred ceeecCCccc-ccCh---hHHHHHHHcCCceEeeCCccccCCC----------CChhHHHHHHHHcCCCcCCCCCC
Q 020848 239 AMVRLSAGRV-RFSM---PEQALCFLAGANSIFTGEKLLTTPN----------NDFDADQLMFKVLGLTPKAPSFH 300 (320)
Q Consensus 239 ~~i~~~~g~~-~~~~---~~~~~~~~~Gan~~~~~~~~~~~~~----------~~~~~~~~~i~~~G~~p~~~~~~ 300 (320)
..|++++|++ .+.. +.+...+.+ +|+.++|. |+|+.+ ++++++++||+++||+|+.-|-+
T Consensus 291 ~~i~~s~g~~~~lrd~~~~~~~~~~~a-~~~~~~G~-y~~~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~~~~~~~ 364 (366)
T TIGR02351 291 VEISLSTRESKKFRDNVIPLGITKMSA-GSSTEPGG-YSSEKKGLEQFEISDERSVAEVEEDLRSKGLQPVWKDWD 364 (366)
T ss_pred cccEEecCCCHHHHHHHHhhcceeecc-CcccCCCC-cCCCCCCcCcccCCCCCCHHHHHHHHHHCCCeecccccc
Confidence 9999999885 3321 222333555 67777777 888777 99999999999999999877543
No 18
>PRK07094 biotin synthase; Provisional
Probab=100.00 E-value=1.8e-39 Score=294.12 Aligned_cols=280 Identities=21% Similarity=0.319 Sum_probs=237.0
Q ss_pred hhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC
Q 020848 7 TTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI 86 (320)
Q Consensus 7 ~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ 86 (320)
.+.+.|++++|++|+++.+++ .|++|+++|.||+++.... ...++. +++|+++++++.+.+.|++.|+|+||..+.
T Consensus 24 ~A~~~r~~~~g~~v~~~~~i~-~s~gC~~~C~fC~~~~~~~-~~~r~~-ls~eei~~~~~~~~~~g~~~i~l~gG~~~~- 99 (323)
T PRK07094 24 AADEVRKKYVGDEVHLRGLIE-FSNYCRNNCLYCGLRRDNK-NIERYR-LSPEEILECAKKAYELGYRTIVLQSGEDPY- 99 (323)
T ss_pred HHHHHHHHhCCCEEEEEEEEE-ECCCCCCCCEeCCcccCCC-CCcCcC-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC-
Confidence 345566788999999999999 5999999999999875321 223344 799999999999999999999998765322
Q ss_pred CCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH
Q 020848 87 GRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE 164 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~ 164 (320)
...+++.++++.+++ .++.+..+.|.++++.++.|+++|++++.+++||. +++++.+++++++++++++++.+++
T Consensus 100 ---~~~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~ 176 (323)
T PRK07094 100 ---YTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE 176 (323)
T ss_pred ---CCHHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 245788999999986 57777788899999999999999999999999999 9999999999999999999999999
Q ss_pred cCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 165 AGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 165 ~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+|+.+.+++|+|+ |||.+++.++++++++++ ++.+++++|+|.||||+.+.++++.++.+++++.+|+++|+..++.
T Consensus 177 ~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~--~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~ 254 (323)
T PRK07094 177 LGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPA 254 (323)
T ss_pred cCCeecceEEEECCCCCHHHHHHHHHHHHhCC--CCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcc
Confidence 9999999999999 999999999999999998 7899999999999999999888999999999999999999988888
Q ss_pred CCcccccChhHHHHHHHcCCceEeeC---Cc----cccCCC-C--------ChhHHHHHHHHcCCCcC
Q 020848 244 SAGRVRFSMPEQALCFLAGANSIFTG---EK----LLTTPN-N--------DFDADQLMFKVLGLTPK 295 (320)
Q Consensus 244 ~~g~~~~~~~~~~~~~~~Gan~~~~~---~~----~~~~~~-~--------~~~~~~~~i~~~G~~p~ 295 (320)
+++|..+.+..+..++.+|||++++. .. |.--++ . ....+...++.+|++|.
T Consensus 255 ~~~~~~~~~~~~~~~l~~Gan~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (323)
T PRK07094 255 TTALGTLNPDGREKGLKAGANVVMPNLTPGEYRKLYSLYPGKICTGEEAAECRECIERRIESIGRTVG 322 (323)
T ss_pred cCCccccCchhHHHHHHcCCceecCCCCchhhCcccccCCCCCCCCccHHHHHHHHHHHHHHcCCccC
Confidence 88888888877789999999999653 11 211111 1 12233457888998775
No 19
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=100.00 E-value=3.8e-40 Score=296.95 Aligned_cols=277 Identities=20% Similarity=0.282 Sum_probs=224.8
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC------------Cc
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RK 89 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g------------e~ 89 (320)
.+..++ +||+|+.+|.||+|+... +...++.+++|+|++.++.+.+.|++++++++|.++... -.
T Consensus 4 ~n~~i~-~tn~C~~~C~fCaf~~~~--g~~~~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~ 80 (322)
T TIGR03550 4 RNVFIP-LTRLCRNRCGYCTFRRPP--GELEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYD 80 (322)
T ss_pred ceEEec-cccCcCCCCccCCccccC--CCcccccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCc
Confidence 345777 799999999999998642 334456699999999999999999999999988655331 00
Q ss_pred hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhh----CCCCCHHHHHHHHHHHH
Q 020848 90 TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI----ITTRSYDERLETLKHVR 163 (320)
Q Consensus 90 ~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i----~~~~~~~~~l~~i~~a~ 163 (320)
...+++.++++.+++ .++..+++.|.++++.++.|+++|++ +.+++||+ +.++..+ +++++++++++.++.++
T Consensus 81 ~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~ 159 (322)
T TIGR03550 81 STLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG 159 (322)
T ss_pred cHHHHHHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 124678888888884 37777889999999999999999986 58889998 6655443 44567899999999999
Q ss_pred HcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCce
Q 020848 164 EAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM 240 (320)
Q Consensus 164 ~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~ 240 (320)
+.|+++++++|+|+|||++|+.+++..+++++. ++..+.+++|+|.||||++..++++..+.++++|++|+++|+ .
T Consensus 160 ~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~ 238 (322)
T TIGR03550 160 RLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-D 238 (322)
T ss_pred HcCCCccceeeEeCCCCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-C
Confidence 999999999999999999999999999999863 245677899999999999888889999999999999999965 2
Q ss_pred eecCCcccccChhHHHHHHHcCCceE-----eeCCccccCCC--CChhHHHHHHHHcCCCcCCCCCCcCCcc
Q 020848 241 VRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTPN--NDFDADQLMFKVLGLTPKAPSFHEGEAN 305 (320)
Q Consensus 241 i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~~~~~--~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 305 (320)
.++..+| .+....+..+|.+|||++ ++++ +.++.+ .+.+++++||+++|++|++|+++|++--
T Consensus 239 ~~I~~~~-~l~~~~~~~~L~~Gand~~gt~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~p~~R~t~y~~~~ 308 (322)
T TIGR03550 239 ISIQVPP-NLNREDYRLLLDAGIDDWGGVSPVTPD-HVNPEAPWPEIDELARATEEAGFTLKERLPVYPEYV 308 (322)
T ss_pred CeeecCC-ccChHHHHHHHhcCCccccCcccCchh-hcCCCCCCCCHHHHHHHHHHcCCCcccccCccHhhh
Confidence 3444446 444435789999999994 4455 444333 6899999999999999999999998754
No 20
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=100.00 E-value=9.6e-40 Score=293.28 Aligned_cols=273 Identities=19% Similarity=0.284 Sum_probs=226.4
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
.+..|+ +|++|+.+|.||+++.... . ...+.+++|+|++.++.+.+.|+++|+|+||..+. ...+.+.++++.
T Consensus 5 ~n~~i~-~T~~C~~~C~FC~~~~~~~-~-~~~~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~----~~~~~~~~i~~~ 77 (309)
T TIGR00423 5 VNRNIN-FTNICVGKCKFCAFRAREK-D-KDAYVLSLEEILEKVKEAVAKGATEVCIQGGLNPQ----LDIEYYEELFRA 77 (309)
T ss_pred ceeeec-CccccccCCccCCCccCCC-C-CCcccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC----CCHHHHHHHHHH
Confidence 345666 8999999999999986432 2 23345999999999999999999999999765432 245778888888
Q ss_pred hhhc--CceEE-----------EeCCCCCHHHHHHHHHhccCeec-cCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHc
Q 020848 102 IRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYN-HNLDTS-REFYSKIITTR-SYDERLETLKHVREA 165 (320)
Q Consensus 102 ~k~~--~~~i~-----------~~~g~l~~e~l~~L~~aGld~v~-i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~ 165 (320)
+|+. ++.+. .+.|.++++.+++|+++|++++. ++.|+. +++++.+++++ ++++++++++.++++
T Consensus 78 Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~ 157 (309)
T TIGR00423 78 IKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRL 157 (309)
T ss_pred HHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHc
Confidence 8854 34332 24577789999999999999996 599999 89999997754 899999999999999
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC----CCC-CCCC--CCCCHHHHHHHHHHHHHhCCC
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK----GTP-LQDQ--KPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~----gt~-~~~~--~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+++++++|+|++|+.+|+.+++..+++++ .++..|..|+|.| +|| ++.. ++++..+.++++|++|+++|
T Consensus 158 Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~--~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp- 234 (309)
T TIGR00423 158 GIPTTATMMFGHVENPEHRVEHLLRIRKIQ--EKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN- 234 (309)
T ss_pred CCCceeeEEecCCCCHHHHHHHHHHHHhhc--hhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999998 6778888888854 888 7654 67899999999999999999
Q ss_pred ceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCcCCCCCCcCCc
Q 020848 239 AMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTPKAPSFHEGEA 304 (320)
Q Consensus 239 ~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p~~~~~~~~~~ 304 (320)
...+++++|..+++..+..+|.+|||++ +..+.+.... .++.++++++|+++|++|++|++.|+.+
T Consensus 235 ~~~~i~a~~~~l~~~~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~~~~r~~~y~~~ 309 (309)
T TIGR00423 235 NIRNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRVPAQRDTLYNIL 309 (309)
T ss_pred CCccceecchhcCHHHHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCCeeecCCCCCcC
Confidence 4666888898888777789999999998 4455444432 4679999999999999999999999864
No 21
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=2.7e-39 Score=318.93 Aligned_cols=287 Identities=17% Similarity=0.223 Sum_probs=240.0
Q ss_pred HhhhccCCCeeEE--EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC
Q 020848 10 LFSISSSMEEVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG 87 (320)
Q Consensus 10 ~~r~~~~~~~v~~--~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g 87 (320)
..|++++|+.|++ +..|| +||.|..+|.||+|++.. ...+.|. +++|||++.++.+.+.|+++|+++||.++.
T Consensus 512 ~iR~~~~G~~Vt~vvn~~In-~TN~C~~~C~FCafs~~~-~~~~~y~-Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~-- 586 (843)
T PRK09234 512 DLRRDVVGDDVTYVVNRNIN-FTNICYTGCRFCAFAQRK-TDADAYT-LSLDEVADRAWEAWVAGATEVCMQGGIHPE-- 586 (843)
T ss_pred HHHHHhcCCeEEEEEeecee-cCCCCCCCCcccccccCC-CCCCccc-CCHHHHHHHHHHHHHCCCCEEEEecCCCCC--
Confidence 3445678999986 45666 699999999999998753 3434555 899999999999999999999999875442
Q ss_pred CchhHHHHHHHHHHhhhc--CceEE-----------EeCCCCCHHHHHHHHHhccCeeccC-cccc-HHHHhhhCCCC-C
Q 020848 88 RKTNFNQILEYVKDIRDM--GMEVC-----------CTLGMLEKHQAIELKKAGLTAYNHN-LDTS-REFYSKIITTR-S 151 (320)
Q Consensus 88 e~~~~~~l~~~i~~~k~~--~~~i~-----------~~~g~l~~e~l~~L~~aGld~v~i~-let~-~~~~~~i~~~~-~ 151 (320)
...+++.++++.+|+. ++.++ .+.|...++.+++|+++|++++..+ -+.+ +++++.+++++ +
T Consensus 587 --~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~ 664 (843)
T PRK09234 587 --LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLP 664 (843)
T ss_pred --cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCC
Confidence 3467888999999853 45542 3457888999999999999999874 4555 67888888754 8
Q ss_pred HHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec----CCCCCC----CCCCCCHH
Q 020848 152 YDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV----KGTPLQ----DQKPVEIW 223 (320)
Q Consensus 152 ~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~----~gt~~~----~~~~~~~~ 223 (320)
.++|+++++.|++.|+++++++|+|++|+++|+.+++.++++++ .++.+|..|+|+ ++||+. ..+.++..
T Consensus 665 ~~~wle~i~~Ah~lGi~~~stmm~G~~Et~edrv~hl~~LreLq--~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~ 742 (843)
T PRK09234 665 TAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQ--DRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHR 742 (843)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEcCCCCHHHHHHHHHHHHhcC--cccCCeeeeeeccccCCCCCcccccCCCCCCCHH
Confidence 88999999999999999999999999999999999999999998 678899999994 478773 23568999
Q ss_pred HHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE---eeCCccccCC------CCChhHHHHHHHHcCCCc
Q 020848 224 EMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTP------NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 224 e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~------~~~~~~~~~~i~~~G~~p 294 (320)
+.++++|++|+++|+.+++++++|.++++...+.+|.+|||++ ++++.+...+ .++.+++.++|+++|+.|
T Consensus 743 e~Lr~iAvaRl~Lp~~i~~Iqa~wv~lg~~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p 822 (843)
T PRK09234 743 ENRAVHALARIMLHGRIDNIQTSWVKLGVEGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRPA 822 (843)
T ss_pred HHHHHHHHHHHhCCCCcccccchhhhcCHHHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 9999999999999988889999999888887789999999998 4455454322 357899999999999999
Q ss_pred CCCCCCcCCcc
Q 020848 295 KAPSFHEGEAN 305 (320)
Q Consensus 295 ~~~~~~~~~~~ 305 (320)
++|+++|+.+.
T Consensus 823 ~~R~t~Y~~~~ 833 (843)
T PRK09234 823 RQRTTLYGPVA 833 (843)
T ss_pred eeecCCCCccc
Confidence 99999999976
No 22
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=100.00 E-value=6.9e-38 Score=290.93 Aligned_cols=294 Identities=20% Similarity=0.276 Sum_probs=245.0
Q ss_pred chhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCC
Q 020848 6 STTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT 85 (320)
Q Consensus 6 ~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~ 85 (320)
+-+.+.|++++|++|.++.+|+ .||.|..+|.||+|+... ....++ .+++|||+++++.+.+.|+++++|++|..++
T Consensus 68 ~~A~~ir~~~~Gn~I~lfapLy-iSN~C~n~C~YCgfs~~n-~~i~r~-~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~ 144 (469)
T PRK09613 68 EAAREIKEKIYGNRIVLFAPLY-ISNYCVNNCVYCGFRRSN-KEIKRK-KLTQEEIREEVKALEDMGHKRLALVAGEDPP 144 (469)
T ss_pred HHHHHHHHHHcCCEEEEEEecc-ccCCCCCCCccCCCccCC-CCCCce-ECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC
Confidence 3445566788999999999999 699999999999998653 234444 4899999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhhc----C-c-eEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHH
Q 020848 86 IGRKTNFNQILEYVKDIRDM----G-M-EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDER 155 (320)
Q Consensus 86 ~ge~~~~~~l~~~i~~~k~~----~-~-~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~ 155 (320)
. ..++++.++++.+++. + + .+.++.|.++.+.+++|+++|++++.+.+||+ +++|+.+++ +++|+++
T Consensus 145 ~---~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~R 221 (469)
T PRK09613 145 N---CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWR 221 (469)
T ss_pred C---CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHH
Confidence 2 3578888998888853 2 3 47888899999999999999999999999999 999999876 5799999
Q ss_pred HHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcC----CCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 156 LETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATL----PTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 156 l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l----~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
+++++.|+++|++ +++++++|++++.+|...++..+++| +.+++.|++..|.|.+|||+++.+ +++.+++++++
T Consensus 222 l~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lrii 301 (469)
T PRK09613 222 LTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIV 301 (469)
T ss_pred HHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHH
Confidence 9999999999998 99999999999999999988888777 333778999999999999997664 58999999999
Q ss_pred HHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC-----------------CccccCCCCChhHHHHHHHHcCC
Q 020848 230 ATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG-----------------EKLLTTPNNDFDADQLMFKVLGL 292 (320)
Q Consensus 230 a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~G~ 292 (320)
+++|+++|...+.+++ ++. +..+...+..|++.+..| .+|...+.++++|+++.|.+.||
T Consensus 302 A~~RL~~P~~~I~lSt-RE~--~~~r~~~~~~gvt~~sags~t~~ggy~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~ 378 (469)
T PRK09613 302 AILRLAVPYTGMILST-RES--AELRREVLELGVSQISAGSRTGVGGYSEEEEEEEKAQFELGDHRSLDEVIRELCEMGY 378 (469)
T ss_pred HHHHHHCCCCCceeec-CCC--HHHHHHHHhhcceeecccccCCCCCcCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCC
Confidence 9999999999998876 332 344555666777766322 12444567899999999999999
Q ss_pred CcCCCCCCcCCccccc
Q 020848 293 TPKAPSFHEGEANVSE 308 (320)
Q Consensus 293 ~p~~~~~~~~~~~~~~ 308 (320)
.|+.=+-=|+.-||-+
T Consensus 379 ~p~~ctacyr~grtg~ 394 (469)
T PRK09613 379 IPSFCTACYRLGRTGD 394 (469)
T ss_pred eEEEeeccccCCCchh
Confidence 9998888888887765
No 23
>PRK09234 fbiC FO synthase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=307.61 Aligned_cols=293 Identities=18% Similarity=0.212 Sum_probs=244.4
Q ss_pred hhHHhhhccCCC-----eeEEE--EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEe
Q 020848 7 TTLLFSISSSME-----EVQQC--TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMG 79 (320)
Q Consensus 7 ~~~~~r~~~~~~-----~v~~~--~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~ 79 (320)
-+.+.|++++|+ .|+++ .+++ +||.|..+|.||+|+.... . ..+..+++|||++.++.+.+.|+++++|+
T Consensus 49 ~A~~vR~~~~G~~~~~~~Vty~~n~~In-~Tn~C~~~C~YCaF~~~~~-~-~~~~~ls~eEIl~~a~~~~~~G~~e~l~t 125 (843)
T PRK09234 49 SAARVRDAGLGAAGRPGVVTYSRKVFIP-LTRLCRDRCHYCTFATVPG-K-LEAAYLSPDEVLDIARAGAAAGCKEALFT 125 (843)
T ss_pred HHHHHHHHHcCCcccCceEEEEeEEEec-CCCCCCCCCCcCCCccCCC-C-CccccCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 344556677898 89886 5777 6999999999999986433 2 34566999999999999999999999999
Q ss_pred cccCCCCC------------CchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhh
Q 020848 80 AAWRDTIG------------RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSK 145 (320)
Q Consensus 80 ~g~~~~~g------------e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~ 145 (320)
+|.++... -...++++.++++.+|+ .++..+++.|.++.++++.|+++|++ +.+.+|+. +++|+.
T Consensus 126 ~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~ 204 (843)
T PRK09234 126 LGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWSELARLKPVAPS-MGMMLETTSRRLFEE 204 (843)
T ss_pred cCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHHHHHHHHHhcCc-CCCCHHHHHHHHHHh
Confidence 98765421 01246899999999984 68878899999999999999999997 78999998 888743
Q ss_pred ------hCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCC
Q 020848 146 ------IITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 146 ------i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~ 216 (320)
+++++.+++++++++.|+++|+++++++|+|+|||.+|+.+++..+++++. +++.+.+++|.|.+||||++
T Consensus 205 ~g~~h~~~P~K~~~~RL~ti~~A~~lGi~~tsG~L~GiGEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~ 284 (843)
T PRK09234 205 KGGPHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAG 284 (843)
T ss_pred hcccccCCCCCCHHHHHHHHHHHHHcCCCccceEEEECCCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCC
Confidence 445678999999999999999999999999999999999999999999853 37789999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE-----eeCCccc-cCCCCChhHHHHHHHHc
Q 020848 217 QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLL-TTPNNDFDADQLMFKVL 290 (320)
Q Consensus 217 ~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~-~~~~~~~~~~~~~i~~~ 290 (320)
.++++.+++++++|++|+++|+. +++...|..+++.....++.+|||++ ++++... ....++.+++.++++++
T Consensus 285 ~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~~~~~~L~~GanD~GG~~~~~~d~~~p~~~~~~~~~l~~~~~~a 363 (843)
T PRK09234 285 VPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGDECAALLGAGIDDWGGVSPLTPDHVNPERPWPQLDELAAVTAEA 363 (843)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHHHHHHHHhcCCCcccchhhhHhhccCccCCCCCHHHHHHHHHHc
Confidence 88999999999999999999763 46666677776666788999999998 2333111 12346899999999999
Q ss_pred CCCcCCCCCCcCCc
Q 020848 291 GLTPKAPSFHEGEA 304 (320)
Q Consensus 291 G~~p~~~~~~~~~~ 304 (320)
||.|++|++.|+..
T Consensus 364 G~~~~eR~t~Y~~~ 377 (843)
T PRK09234 364 GFTLVERLTAYPEY 377 (843)
T ss_pred CCCcccccCccHhH
Confidence 99999999999885
No 24
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6.9e-38 Score=282.77 Aligned_cols=296 Identities=17% Similarity=0.191 Sum_probs=225.5
Q ss_pred cchhHHhhhccCCCeeE--EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEeccc
Q 020848 5 LSTTLLFSISSSMEEVQ--QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAW 82 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~--~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~ 82 (320)
+|+.++.+ +..++.|+ ++.+|| +||.|..+|.||+|+.... . +..+.|++|||.+.++.+.+.|+++++|+||.
T Consensus 41 ~A~~~r~~-~~~~~~vtyv~n~~in-~TN~C~~~C~fCaF~~~~~-~-~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~ 116 (370)
T COG1060 41 LADKARRR-KRVGDGVTYVVNRNIN-YTNICVNDCTFCAFYRKPG-D-PKAYTLSPEEILEEVREAVKRGITEVLIVGGE 116 (370)
T ss_pred HHHHHHHh-hccCCcEEEEEeecCC-cchhhcCCCCccccccCCC-C-ccccccCHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 45666622 23455554 567887 8999999999999987542 2 23445999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHhhhc----Cc--------eEEEeC-CCCCHHHHHHHHHhccCeeccCcccc-HH-HHhhhC
Q 020848 83 RDTIGRKTNFNQILEYVKDIRDM----GM--------EVCCTL-GMLEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKII 147 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k~~----~~--------~i~~~~-g~l~~e~l~~L~~aGld~v~i~let~-~~-~~~~i~ 147 (320)
++..+ ++++.++++.+|+. .+ ...... +...+|.+++|+++|+|.+..+.... .+ +.+.++
T Consensus 117 ~p~~~----~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~ 192 (370)
T COG1060 117 HPELS----LEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHC 192 (370)
T ss_pred CCCcc----hHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcCcceeechHHHHHhhC
Confidence 76543 34666666666641 11 111223 34456669999999999999988777 54 445555
Q ss_pred C-CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCC-CCCCCCCCCH
Q 020848 148 T-TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGT-PLQDQKPVEI 222 (320)
Q Consensus 148 ~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt-~~~~~~~~~~ 222 (320)
+ +.+++.|++.++.|+++|++...++++|++|+.+|+.+++..+++++. +...+.+.+|.|.+++ +....+..+.
T Consensus 193 p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~ 272 (370)
T COG1060 193 PPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASL 272 (370)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEEEecCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCH
Confidence 4 459999999999999999999999999999999999999999998864 2334444455555555 5555667899
Q ss_pred HHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEe---eCCccccC------CCCChhHHHHHHHHcCCC
Q 020848 223 WEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTT------PNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 223 ~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~------~~~~~~~~~~~i~~~G~~ 293 (320)
.+++++++++|++++...-.+.+.|...+......++.+|||++- ..+..... ..++++++.++|+++|++
T Consensus 273 ~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~ 352 (370)
T COG1060 273 EQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAGRI 352 (370)
T ss_pred HHHHHHHHHHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcCCC
Confidence 999999999999999766556677888777667889999999983 23333322 257899999999999999
Q ss_pred cCCCCCCcCCccccc
Q 020848 294 PKAPSFHEGEANVSE 308 (320)
Q Consensus 294 p~~~~~~~~~~~~~~ 308 (320)
|++|++.|++..+-+
T Consensus 353 p~~Rdt~Y~~~~~~~ 367 (370)
T COG1060 353 PVERDTLYRILYVGD 367 (370)
T ss_pred eeeeccccceeeccc
Confidence 999999999987654
No 25
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=100.00 E-value=2.2e-37 Score=281.59 Aligned_cols=280 Identities=21% Similarity=0.329 Sum_probs=224.6
Q ss_pred CCCeeEE--EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--
Q 020848 16 SMEEVQQ--CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-- 91 (320)
Q Consensus 16 ~~~~v~~--~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-- 91 (320)
.|+.|++ +..++ +|++|+.+|.||+++... + ....+++|+|++.++.+.+.|+++++|+||..+... ...
T Consensus 4 ~~~~vt~~~~~~i~-~Tn~C~~~C~fC~~~~~~--~--~~~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~-~~~~~ 77 (336)
T PRK06245 4 MSKIVTYSRNVFIP-LTYECRNRCGYCTFRRDP--G--QPSLLSPEEVKEILRRGADAGCTEALFTFGEVPDES-YERIK 77 (336)
T ss_pred CCCeeEeecceeee-ccccccCCCccCCCcCCC--C--ccCcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccc-hhhhh
Confidence 3788876 45666 799999999999987532 2 223699999999999999999999999988654332 011
Q ss_pred -------HHHHHHHHHHhh----hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhh---CCCCCHHHHH
Q 020848 92 -------FNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKI---ITTRSYDERL 156 (320)
Q Consensus 92 -------~~~l~~~i~~~k----~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i---~~~~~~~~~l 156 (320)
+.++.+.++.+. +.++...++.+.++++.++.|+++|+. +.+.+|+. +.+++.+ ++++++++++
T Consensus 78 ~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l 156 (336)
T PRK06245 78 EQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRL 156 (336)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHH
Confidence 244555554443 335556788899999999999999864 57788999 7777555 5577899999
Q ss_pred HHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCC---CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020848 157 ETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPT---HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 157 ~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~---~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
++++.+++.|+++++++++|++|+.+|+.+++..+++++. ++..+.+++|+|.++|++...+.++.++.+++++.+|
T Consensus 157 ~~i~~a~~~Gi~~~~~~i~G~gEt~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~R 236 (336)
T PRK06245 157 ETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALAR 236 (336)
T ss_pred HHHHHHHHcCCceeeeeeeECCCCHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988863 2567889999999999998777889999999999999
Q ss_pred HhCCCceeecCCcccccChhHHHHHHHcCCceE-----eeCCccccCC--CCChhHHHHHHHHcCCCcCCCCCCcCCcc
Q 020848 234 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI-----FTGEKLLTTP--NNDFDADQLMFKVLGLTPKAPSFHEGEAN 305 (320)
Q Consensus 234 ~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~-----~~~~~~~~~~--~~~~~~~~~~i~~~G~~p~~~~~~~~~~~ 305 (320)
+++|+. +.+..++ .+....+..+|.+|||++ ..++ ++++. +++.++++++|+++|++|++|++.|+++-
T Consensus 237 l~l~~~-i~i~~~~-~~~~~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~~~~~~~~~~~i~~~g~~~~~r~~~y~~~~ 312 (336)
T PRK06245 237 LILPPD-ISIQVPP-NLNRDTGLLLLDAGADDLGGISPVTKD-YVNPEYPWPDIEELREILEEAGWPLKERLPVYPKYI 312 (336)
T ss_pred HHCCCC-ceEecCC-ccchHHHHHHHhcCCccccCCccCCCc-eeCCCCCCCCHHHHHHHHHHcCCCcccccCcchhhc
Confidence 999763 3454443 555566678899999998 3445 55544 57899999999999999999999999965
No 26
>PRK06267 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-36 Score=274.08 Aligned_cols=268 Identities=17% Similarity=0.210 Sum_probs=220.9
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCC--CCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecc
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCS--EDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAA 81 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~--~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g 81 (320)
.+-+-+.|+++||++|+++.+++ .|++|+ .+|.||+++..... ..+.+..+++|+|+++++.+.+.|++.++++||
T Consensus 10 ~~~A~~ir~~~fG~~v~l~~~l~-~S~~C~l~~~C~FC~~s~~~~~i~~~~~~~~s~eeI~eea~~~~~~Gv~~~~lsgG 88 (350)
T PRK06267 10 SIKAFKLTEKHHGNIVSLERALF-LGWYCNLKGPCKFCYMSTQKDKIKDPLKARRRVESILAEAILMKRIGWKLEFISGG 88 (350)
T ss_pred HHHHHHHHHHHcCCeEEEEEeee-ecCCCcCCCCCcCCCCcccCCccCccccccCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 34455567788999999999999 699999 89999999864221 112345589999999999999999987777765
Q ss_pred cCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHH
Q 020848 82 WRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETL 159 (320)
Q Consensus 82 ~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i 159 (320)
.. ...+++.++++.++.. +..++.+.|.++.+.+..++.+|+ .+++||. +++|+.++++++++++++++
T Consensus 89 ~~------~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv---~g~~ET~~~~~~~~i~~~~s~ed~~~~l 159 (350)
T PRK06267 89 YG------YTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGV---VGAVETVNPKLHREICPGKPLDKIKEML 159 (350)
T ss_pred CC------CCHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCc---eeeeecCCHHHHHhhCCCCCHHHHHHHH
Confidence 32 2334555666665543 345677888888888877777765 4689999 89999999999999999999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
+.++++|+++++++|+|+|++.+|+.++++++++++ ++.++++.|+|.||||+.+.++++.++++++++++|+++|+.
T Consensus 160 ~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~--~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~ 237 (350)
T PRK06267 160 LKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELD--LDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKI 237 (350)
T ss_pred HHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999998 789999999999999999988999999999999999999998
Q ss_pred eeecCCcccccChhHHHHHHHcCCceE----eeCCccccCCCCChhHHHHHH
Q 020848 240 MVRLSAGRVRFSMPEQALCFLAGANSI----FTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 240 ~i~~~~g~~~~~~~~~~~~~~~Gan~~----~~~~~~~~~~~~~~~~~~~~i 287 (320)
.+ ++++|.....+.+. .+.+|||.+ +.|. |+|+.|++++++++--
T Consensus 238 ~I-~~~~~~~~l~~~~~-~~~aGaN~i~~~p~~g~-ylt~~g~~~~~~~~~~ 286 (350)
T PRK06267 238 KI-ITGTWVDKLTNIGP-LIMSGSNVITKFPLFSM-YGTKEGKRVENEIRWT 286 (350)
T ss_pred Cc-chhhHhHhcchhhH-HhhcCcceeeccchhcc-CcccCCCCHHHHHHHh
Confidence 87 55667533333434 677999999 6787 9999999999987654
No 27
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.94 E-value=2.2e-25 Score=195.60 Aligned_cols=238 Identities=20% Similarity=0.282 Sum_probs=185.1
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||..+.. .-++ .|..||++|.||...... ...++...+|+|||.+.++.+.+.|++.|-|+| |||+..+++
T Consensus 6 ~gR~~~~-LRiS-vTdrCNfrC~YCm~eg~~-~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTG------GEPllR~dl 76 (322)
T COG2896 6 FGRPVRY-LRIS-VTDRCNFRCTYCMPEGPL-AFLPKEELLSLEEIRRLVRAFAELGVEKVRLTG------GEPLLRKDL 76 (322)
T ss_pred cCCEece-EEEE-EecCcCCcccccCCCCCc-ccCcccccCCHHHHHHHHHHHHHcCcceEEEeC------CCchhhcCH
Confidence 4556554 2334 799999999999876522 233444569999999999999999999997766 679999999
Q ss_pred HHHHHHhhhcCce-E-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 96 LEYVKDIRDMGME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 96 ~~~i~~~k~~~~~-i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++++.+++.++. + .+|||.+.+..+..|++||+++|++|+||. ++.|.++.+...++++++.|+.|.++|+. +++
T Consensus 77 ~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKl 156 (322)
T COG2896 77 DEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKL 156 (322)
T ss_pred HHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEE
Confidence 9999999976654 4 567999999999999999999999999999 99999999877899999999999999996 999
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC-CCCCCCCCCCHHHHHHHHHHHHHh--------CCCceee
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG-TPLQDQKPVEIWEMIRMIATARIV--------MPKAMVR 242 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g-t~~~~~~~~~~~e~~~~~a~~R~~--------~p~~~i~ 242 (320)
++++--|-|++++.++++++++.+ + .+.|..|+|... ..+......+.+++.+.+...-.. -|..++.
T Consensus 157 N~Vv~kgvNd~ei~~l~e~~~~~~--~-~lrfIE~m~~g~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~ 233 (322)
T COG2896 157 NTVLMKGVNDDEIEDLLEFAKERG--A-QLRFIELMPLGEGNSWRLDKYLSLDEILRKLEERATLLPVRKRLHGRAKYFI 233 (322)
T ss_pred EEEEecCCCHHHHHHHHHHHhhcC--C-ceEEEEEeecCcccchhhhccccHHHHHHHHHhhccccccccccCCCceEEE
Confidence 999955889999999999999997 3 689999999874 222222356777777776541111 1123333
Q ss_pred cCCc-ccccChhHHHHHHHcCCceE
Q 020848 243 LSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 243 ~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
...+ .+++..+... .||++||++
T Consensus 234 ~~~~~~ig~I~p~~~-~FC~~CnR~ 257 (322)
T COG2896 234 HPDGGEIGFIAPVSN-PFCATCNRL 257 (322)
T ss_pred eCCCcEEEEEcCCCc-hhhhhccee
Confidence 3333 4455555533 399999998
No 28
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.93 E-value=2.8e-24 Score=196.98 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=183.8
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
+|..+.. .-++ .|+.||++|.||....... .......++.|++.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 53 ~gr~~~~-lris-vT~~CNlrC~yC~~~~~~~-~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tG------GEPllr~dl 123 (373)
T PLN02951 53 FGRRHNY-LRIS-LTERCNLRCQYCMPEEGVE-LTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTG------GEPTLRKDI 123 (373)
T ss_pred CCCcccE-EEEE-EcCCcCcCCCCCCCCcCCC-CCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcchhhH
Confidence 3555543 2345 6999999999997653211 11223458999999999988889999998876 578888899
Q ss_pred HHHHHHhhhc-Cce-E-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 96 LEYVKDIRDM-GME-V-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 96 ~~~i~~~k~~-~~~-i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
.++++.+++. ++. + .+|||.+..+.+++|+++|+++|++|+|+. ++.|+.+++...+++++++|+.+++.|+ .+.
T Consensus 124 ~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vk 203 (373)
T PLN02951 124 EDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVK 203 (373)
T ss_pred HHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 9999999875 764 4 478998778889999999999999999999 9999999888889999999999999998 488
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH----Hh-----CCCcee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR----IV-----MPKAMV 241 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R----~~-----~p~~~i 241 (320)
+++++-.|.|++++.++++++++++ ..+.+..|+|.+++++......+.+++++.+...- .. .|..++
T Consensus 204 in~vv~~g~N~~Ei~~li~~a~~~g---i~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y 280 (373)
T PLN02951 204 VNCVVMRGFNDDEICDFVELTRDKP---INVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNF 280 (373)
T ss_pred EEEEecCCCCHHHHHHHHHHHHhCC---CeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEE
Confidence 8887755899999999999999987 36889999999988765555567788777765421 11 112344
Q ss_pred ecC--CcccccChhHHHHHHHcCCceE
Q 020848 242 RLS--AGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 242 ~~~--~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++. .|.+++..+. ...||.+||++
T Consensus 281 ~~~~~~g~ig~I~~~-s~~FC~~CnRl 306 (373)
T PLN02951 281 RIDGHCGSVSFITSM-TEHFCAGCNRL 306 (373)
T ss_pred EECCCCeEEEEEcCC-cccccccCCeE
Confidence 443 2445666655 45699999998
No 29
>PRK12928 lipoyl synthase; Provisional
Probab=99.93 E-value=2.9e-24 Score=189.68 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=168.4
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
.|++.+.+.++.++.+++.. .|++|+.+|.||.++. +. ...++++++++.++.+...|++++.|+|+..+
T Consensus 46 ~A~~~~~~~~~~~~~~tfv~----is~gC~~~C~FCa~~~----g~--~~~~~~eei~~~a~~~~~~G~keivitg~~~d 115 (290)
T PRK12928 46 EARCPNRGECYAQGTATFLI----MGSICTRRCAFCQVDK----GR--PMPLDPDEPERVAEAVAALGLRYVVLTSVARD 115 (290)
T ss_pred HhCCCcccccCCCCEEEEEE----ecccccCcCCCCCccC----CC--CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCC
Confidence 57888888877677766522 3999999999999875 21 23389999999999999999999999887653
Q ss_pred CCCCchhHHHHHHHHHHhhhc--CceEE-EeCCCC--CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHH
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GMEVC-CTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETL 159 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~i~-~~~g~l--~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i 159 (320)
... ....+.+.++++.+++. ++.+. .++..+ ..+.++.|+++|.+.+++.+||.+++++.|+++.+++++++.+
T Consensus 116 Dl~-d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l 194 (290)
T PRK12928 116 DLP-DGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLL 194 (290)
T ss_pred ccc-ccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHH
Confidence 321 12345677777777754 33432 244443 5788999999999999999998899999999999999999999
Q ss_pred HHHHHcC--CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 160 KHVREAG--INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 160 ~~a~~~G--i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+.+++.| +.+++++|+|+|||++|+.++++++++++ ++.+.++.|.+-. ..|.. ...+++++..+...+..
T Consensus 195 ~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~--~d~v~i~~Yl~p~~~~~~v~--~~~~~~~f~~~~~~~~~ 269 (290)
T PRK12928 195 ARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVG--CDRLTIGQYLRPSLAHLPVQ--RYWTPEEFEALGQIARE 269 (290)
T ss_pred HHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEEcCCCCCccCCcee--eccCHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999998 8999998887522 44443 34566665555555543
No 30
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.93 E-value=3.1e-24 Score=194.53 Aligned_cols=237 Identities=17% Similarity=0.216 Sum_probs=180.4
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||.++.. .-++ .|+.||++|.||..... ...+....++.||+.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 9 ~gr~i~~-l~i~-iT~~CNl~C~yC~~~~~--~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tG------GEPllr~dl 78 (329)
T PRK13361 9 FGRTVTY-LRLS-VTDRCDFRCVYCMSEDP--CFLPRDQVLSLEELAWLAQAFTELGVRKIRLTG------GEPLVRRGC 78 (329)
T ss_pred CCCccCe-EEEE-ecCCccccCCCCCCCCC--CcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------cCCCccccH
Confidence 4666654 2344 69999999999975421 111234459999999999999899999998876 578888899
Q ss_pred HHHHHHhhhcC-c-e-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 96 LEYVKDIRDMG-M-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 96 ~~~i~~~k~~~-~-~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
.++++.+++.+ + . ..+|||.+..+.++.|+++|+++|++|+|+. ++.|+.+++..++++++++++.+++.|+ .+.
T Consensus 79 ~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~ 158 (329)
T PRK13361 79 DQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIK 158 (329)
T ss_pred HHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceE
Confidence 99999998653 4 3 3578898777899999999999999999999 9999999988899999999999999999 688
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHHHh--------CCCcee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATARIV--------MPKAMV 241 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-~~~~~~~~~~e~~~~~a~~R~~--------~p~~~i 241 (320)
+++++-.++|.+++.++++++.+++ + .+.+..|+|..+.. +.....++.+++...+...... .|..++
T Consensus 159 in~v~~~g~N~~ei~~~~~~~~~~g--i-~~~~ie~mP~g~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (329)
T PRK13361 159 LNAVILRGQNDDEVLDLVEFCRERG--L-DIAFIEEMPLGEIDERRRARHCSSDEVRAIIETRYPLTPSNKRTGGPARYY 235 (329)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhcC--C-eEEEEecccCCCccchhhccCcCHHHHHHHHHHhCCcccCCCCCCCCCeEE
Confidence 8887745899999999999999998 4 46788899987532 3223457788877766433111 122344
Q ss_pred ecC--CcccccChhHHHHHHHcCCceE
Q 020848 242 RLS--AGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 242 ~~~--~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++. .|.+++..+. ...||.+||++
T Consensus 236 ~~~~~~~~ig~I~~~-s~~fC~~Cnr~ 261 (329)
T PRK13361 236 TMADSPIHIGFISPH-SHNFCHECNRV 261 (329)
T ss_pred EECCCCeEEEEEcCC-CccccccCCeE
Confidence 443 2345555554 45689999998
No 31
>PRK05481 lipoyl synthase; Provisional
Probab=99.93 E-value=9.6e-24 Score=186.94 Aligned_cols=214 Identities=20% Similarity=0.266 Sum_probs=165.0
Q ss_pred cchhHHhhhccCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCC
Q 020848 5 LSTTLLFSISSSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRD 84 (320)
Q Consensus 5 ~~~~~~~r~~~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~ 84 (320)
+|++.+.+..+.++.+++ +. +|++|+.+|.||.++.. . + ..+++|+|+++++.+.+.|++++.|+||...
T Consensus 39 ~a~~~~~~~~~~~~~~~f---i~-is~GC~~~C~FC~i~~~-r-~----~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~ 108 (289)
T PRK05481 39 EASCPNIGECWSRGTATF---MI-LGDICTRRCPFCDVATG-R-P----LPLDPDEPERVAEAVARMGLKYVVITSVDRD 108 (289)
T ss_pred hhCCCcchhccCCCeEEE---EE-ecccccCCCCCceeCCC-C-C----CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCC
Confidence 577777755556766654 22 69999999999998752 1 1 3389999999999999999999999988643
Q ss_pred CCCCchhHHHHHHHHHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHH
Q 020848 85 TIGRKTNFNQILEYVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLK 160 (320)
Q Consensus 85 ~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~ 160 (320)
... ....+.+.++++.+++. ++. +.........+.+.+|+++|.+.+.+.+++.+++++.|+++.+++++++.++
T Consensus 109 d~~-~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~~le~i~ 187 (289)
T PRK05481 109 DLP-DGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLK 187 (289)
T ss_pred Ccc-cccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHHHHHHHH
Confidence 221 11235777777777752 333 3333333456899999999999999999998889999999999999999999
Q ss_pred HHHHc--CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCC-CCCHHHHHHHHHHHH
Q 020848 161 HVREA--GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQK-PVEIWEMIRMIATAR 233 (320)
Q Consensus 161 ~a~~~--Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~-~~~~~e~~~~~a~~R 233 (320)
.+++. |+.+++++|+|+|||++|+.++++++++++ ++.+.++.|.| |.. .+ +.+ ....+....+..++.
T Consensus 188 ~ar~~~pgi~~~t~~IvGfGET~ed~~~tl~~lrel~--~d~v~if~Ys~-pa~k~~-~v~~~~k~~r~~~l~~~~~ 260 (289)
T PRK05481 188 RAKELHPGIPTKSGLMVGLGETDEEVLEVMDDLRAAG--VDILTIGQYLQ-PSRKHL-PVERYVTPEEFDEYKEIAL 260 (289)
T ss_pred HHHHhCCCCeEeeeeEEECCCCHHHHHHHHHHHHhcC--CCEEEEEccCC-CccccC-CCCCcCCHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999998 89999999999 433 33 332 344455444444443
No 32
>PTZ00413 lipoate synthase; Provisional
Probab=99.93 E-value=2.3e-23 Score=184.99 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=160.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.++.|..+|.||+++... . ...++++|+.+.++.+.++|++.++++++.++... +...+.+.+.|+.+|+. +
T Consensus 155 lG~~CTr~C~FCaqstg~----~-p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~-D~ga~~~a~~I~~Ir~~~p~ 228 (398)
T PTZ00413 155 MGDHCTRGCRFCSVKTSR----K-PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLP-DGGASHVARCVELIKESNPE 228 (398)
T ss_pred cCCCCCCCCCCCCCCCCC----C-CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCC-hhhHHHHHHHHHHHHccCCC
Confidence 589999999999997522 1 24489999999999999999998877777654332 24578899999999963 5
Q ss_pred ceEEEeCCCC--CHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHc---CCeeeeeEEEEeCCC
Q 020848 107 MEVCCTLGML--EKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA---GINVCSGGIIGLGEA 180 (320)
Q Consensus 107 ~~i~~~~g~l--~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget 180 (320)
+.+++..|.+ +.+.++.|+++|++.+++++||.+++|+.++. .++|++.++.|+.+++. |+.+++++|+|+|||
T Consensus 229 ~~IevligDf~g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET 308 (398)
T PTZ00413 229 LLLEALVGDFHGDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGET 308 (398)
T ss_pred CeEEEcCCccccCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCC
Confidence 7788888865 89999999999999999999999999999995 68999999999999987 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeee-eeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPIN-ALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~-~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++|+.+++..|++++ ++.+.|. .+.|.+ ..+.-....+++++..+...+..
T Consensus 309 ~eEvie~m~dLrelG--VDivtIGQYL~Ps~-~h~~V~~yv~P~~F~~~~~~a~~ 360 (398)
T PTZ00413 309 EEEVRQTLRDLRTAG--VSAVTLGQYLQPTK-TRLKVSRYAHPKEFEMWEEEAMK 360 (398)
T ss_pred HHHHHHHHHHHHHcC--CcEEeeccccCCCc-ccCCceeccCHHHHHHHHHHHHH
Confidence 999999999999998 8899994 455543 22223345677776666555543
No 33
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=99.92 E-value=3.1e-23 Score=183.41 Aligned_cols=195 Identities=19% Similarity=0.254 Sum_probs=154.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.+++|+.+|.||.++... + ... .+++++++.++.+.+.|+++++|+|++.+... ......+.++++.+++. +
T Consensus 69 i~~gC~~~C~FC~v~~~r--g--~~~-~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~-d~g~~~l~~li~~I~~~~p~ 142 (302)
T TIGR00510 69 LGDICTRRCPFCDVAHGR--N--PLP-PDPEEPAKLAETIKDMGLKYVVITSVDRDDLE-DGGASHLAECIEAIREKLPN 142 (302)
T ss_pred cCcCcCCCCCcCCccCCC--C--CCC-CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcc-cccHHHHHHHHHHHHhcCCC
Confidence 699999999999986421 1 112 47899999999999999999999987654332 12356788888888853 3
Q ss_pred ce--EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCCHH
Q 020848 107 ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLGEAEE 182 (320)
Q Consensus 107 ~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~e 182 (320)
+. +++....-+.+.++.|+++|.|.+++.+||.+++++.++++++++++++.++.+++. |+.+++++|+|+|||++
T Consensus 143 i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETee 222 (302)
T TIGR00510 143 IKIETLVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNE 222 (302)
T ss_pred CEEEEeCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHH
Confidence 33 333211226889999999999999999999988999999999999999999999998 89999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeeeee-e-cCCCCCCCCCCCCHHHHHHHHHH
Q 020848 183 DRVGLLHTLATLPTHPESVPINALL-A-VKGTPLQDQKPVEIWEMIRMIAT 231 (320)
Q Consensus 183 d~~~~l~~l~~l~~~~~~v~~~~~~-p-~~gt~~~~~~~~~~~e~~~~~a~ 231 (320)
|+.++++++++++ ++.+.+..|. | .++.|+.....++..+.++.++.
T Consensus 223 e~~etl~~Lrelg--~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~ 271 (302)
T TIGR00510 223 EIKQTLKDLRDHG--VTMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVAL 271 (302)
T ss_pred HHHHHHHHHHhcC--CCEEEeecccCCCCCCCccccCCCHHHHHHHHHHHH
Confidence 9999999999998 8888887665 4 34777776655555555555553
No 34
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.92 E-value=4.8e-23 Score=187.54 Aligned_cols=239 Identities=21% Similarity=0.279 Sum_probs=178.5
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||+.+.. ..++ +|+.||++|.||..........+....++.+++.+.++.+.+.|++.|.|+| |||+..+++
T Consensus 5 ~gr~~~~-l~i~-vT~~CNl~C~yC~~~~~~~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltG------GEPll~~~l 76 (334)
T TIGR02666 5 FGRRIDY-LRIS-VTDRCNLRCVYCMPEGGGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTG------GEPLLRKDL 76 (334)
T ss_pred CCCccCe-EEEE-ecCccCcCCCCCCCCcCCCCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEEC------ccccccCCH
Confidence 4677664 3344 6999999999998753111112234559999999999999999999998876 467777888
Q ss_pred HHHHHHhhh-cCc-eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCe-e
Q 020848 96 LEYVKDIRD-MGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGIN-V 169 (320)
Q Consensus 96 ~~~i~~~k~-~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~-v 169 (320)
.++++.+++ .++ .+ .+|||.+..+.++.|+++|++.|++|+|+. ++.|+.+++ +.++++++++++.+++.|+. +
T Consensus 77 ~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v 156 (334)
T TIGR02666 77 VELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPV 156 (334)
T ss_pred HHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 899988886 467 44 467998888899999999999999999999 899999885 56999999999999999997 9
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-CCCCCCCCHHHHHHHHHHHH-HhC---------CC
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-LQDQKPVEIWEMIRMIATAR-IVM---------PK 238 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-~~~~~~~~~~e~~~~~a~~R-~~~---------p~ 238 (320)
.+++++..+.|.+++.++++++++++ + .+.+..|+|.++.. +......+.+++++.++..- .+. |.
T Consensus 157 ~in~vv~~g~n~~ei~~l~~~~~~~g--v-~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~ 233 (334)
T TIGR02666 157 KLNTVVMRGVNDDEIVDLAEFAKERG--V-TLRFIELMPLGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPA 233 (334)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHhcC--C-eEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCc
Confidence 99888756899999999999999998 4 47888999987653 22333466777776654321 111 11
Q ss_pred ceee--cCC--cccccChhHHHHHHHcCCceE
Q 020848 239 AMVR--LSA--GRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 239 ~~i~--~~~--g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.++. +.. +.+++..+. +..||.+||.+
T Consensus 234 ~~~~~~~~~~~~~ig~i~~~-s~~fC~~cnr~ 264 (334)
T TIGR02666 234 PAYRWRLPGGKGRIGFISPV-SDPFCGTCNRL 264 (334)
T ss_pred eeeeeecCCCCeEEEEEccC-CcccccccCEE
Confidence 2333 332 334444443 35588899997
No 35
>PLN02428 lipoic acid synthase
Probab=99.91 E-value=1.5e-22 Score=181.04 Aligned_cols=197 Identities=18% Similarity=0.270 Sum_probs=154.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
.+++|+.+|.||+++... ..++ .+++|+.+.++.+.+.|++++.|+++..+... +...+.+.++++.+++. +
T Consensus 108 lg~gCtr~CrFCav~~~~----~p~~-~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~-D~ga~~~~elir~Ir~~~P~ 181 (349)
T PLN02428 108 LGDTCTRGCRFCAVKTSR----TPPP-PDPDEPENVAEAIASWGVDYVVLTSVDRDDLP-DGGSGHFAETVRRLKQLKPE 181 (349)
T ss_pred ecCCCCCCCCCCcCCCCC----CCCC-CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCC-cccHHHHHHHHHHHHHhCCC
Confidence 699999999999987421 1222 56888999998888999999999888543332 24567888888888854 3
Q ss_pred ceEEE-eCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhC-CCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCCH
Q 020848 107 MEVCC-TLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREA--GINVCSGGIIGLGEAE 181 (320)
Q Consensus 107 ~~i~~-~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~-~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget~ 181 (320)
+.+.. +++. .+++.++.|+++|++.+++++|+.+++++.++ ++.+|+++++.++.+++. |+.+++++|+|+||++
T Consensus 182 i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~ 261 (349)
T PLN02428 182 ILVEALVPDFRGDLGAVETVATSGLDVFAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETD 261 (349)
T ss_pred cEEEEeCccccCCHHHHHHHHHcCCCEEccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCH
Confidence 44433 3343 48999999999999999999998888999998 578999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeee-ecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALL-AVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~-p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+|+.++++++++++ ++.+.|..|. |.+ ..+.-....+++++..+-..+..
T Consensus 262 Edv~e~l~~Lrelg--vd~vtigqyL~Ps~-~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 262 EEVVQTMEDLRAAG--VDVVTFGQYLRPTK-RHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred HHHHHHHHHHHHcC--CCEEeeccccCCCc-ceeeeecccCHHHHHHHHHHHHH
Confidence 99999999999998 8889886654 322 12222345777776666665554
No 36
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.91 E-value=3.9e-23 Score=188.19 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=173.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.++++-++|..+|.||.+....... ...+.....+++.++++......++.|+|+||+ ++.-.+..++.|++.++..-
T Consensus 8 ~lYiHiPFC~~kC~yC~f~~~~~~~~~~~~~~~~~~~l~~ei~~~~~~~~~tiy~GGGT-Ps~L~~~~l~~ll~~i~~~~ 86 (353)
T PRK05904 8 HLYIHIPFCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGT-PNCLNDQLLDILLSTIKPYV 86 (353)
T ss_pred EEEEEeCCccCcCCCCCCeeccCCcccHHHHHHHHHHHHHHHHHhcCCCeEEEEECCCc-cccCCHHHHHHHHHHHHHhc
Confidence 3456788999999999987532111 111221234556655554333457788888775 33322444455555554432
Q ss_pred hcC--ceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-C
Q 020848 104 DMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-G 178 (320)
Q Consensus 104 ~~~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-g 178 (320)
..+ +.+.+++..++++.++.|+++|+++|++++|+. +++++.++++++.++..++++.++++|+. +.+++|+|+ |
T Consensus 87 ~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 87 DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 122 335677888999999999999999999999999 99999999999999999999999999997 999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHHHHHHHhCCCc---eeecC-----Ccccc
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIATARIVMPKA---MVRLS-----AGRVR 249 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~a~~R~~~p~~---~i~~~-----~g~~~ 249 (320)
+|.+++.++++++.+++ +++++++.+.+.|||++.... .++.++..+++..++..+... .+.++ ++...
T Consensus 167 qt~e~~~~tl~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~ 244 (353)
T PRK05904 167 LKLKDLDEVFNFILKHK--INHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYIS 244 (353)
T ss_pred CCHHHHHHHHHHHHhcC--CCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccc
Confidence 99999999999999998 899999999999999987643 356666667776666555432 11121 12221
Q ss_pred cC-----hhHHHHHHHcCCceEeeCCcc
Q 020848 250 FS-----MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 250 ~~-----~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.+ ....+.++++||.+.+.+.++
T Consensus 245 ~hn~~yw~~~~ylg~G~gA~s~~~~~r~ 272 (353)
T PRK05904 245 KHNLAYWRTKDWAAIGWGAHGFENNIEY 272 (353)
T ss_pred cchHhHhCCCCEEEEcCCcCcccCCeEE
Confidence 11 112345777888776655443
No 37
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.91 E-value=1.1e-22 Score=184.89 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=181.4
Q ss_pred cCCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHH
Q 020848 15 SSMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQ 94 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~ 94 (320)
.||+.+.. .-|+ .|++||++|.||...... ........++++++.+.++.+.+.|++.|.|+| |||+..++
T Consensus 11 ~~~r~~~~-l~i~-vT~~Cnl~C~yC~~~~~~-~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~ 81 (331)
T PRK00164 11 RFGRKFTY-LRIS-VTDRCNFRCTYCMPEGYL-PFLPKEELLSLEEIERLVRAFVALGVRKVRLTG------GEPLLRKD 81 (331)
T ss_pred CCCCccCe-EEEE-EcCCcCcCCCCCCCccCC-CCCCccccCCHHHHHHHHHHHHHCCCCEEEEEC------CCCcCccC
Confidence 35777764 2344 699999999999765321 112334559999999999988889999999876 46777788
Q ss_pred HHHHHHHhhhc-C-ceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-ee
Q 020848 95 ILEYVKDIRDM-G-MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NV 169 (320)
Q Consensus 95 l~~~i~~~k~~-~-~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v 169 (320)
+.++++.+++. + ..+ .+|||.+..+.++.|+++|++.+++|+|+. ++.|+.+++..++++++++++.+.+.|+ .+
T Consensus 82 l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v 161 (331)
T PRK00164 82 LEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPV 161 (331)
T ss_pred HHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcE
Confidence 89999988865 3 343 467888777889999999999999999999 8999999888899999999999999998 78
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHH--------hCCCce
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARI--------VMPKAM 240 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~~~~~~e~~~~~a~~R~--------~~p~~~ 240 (320)
.+++++..|.+++++.++++++++++ + .+.+..|+|.+.. .+......+.+++++.++.... -.|..+
T Consensus 162 ~i~~vv~~g~n~~ei~~l~~~~~~~g--v-~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 238 (331)
T PRK00164 162 KVNAVLMKGVNDDEIPDLLEWAKDRG--I-QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPRARSGGPAQY 238 (331)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhCC--C-eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccccCCCCCCCEE
Confidence 88887745889999999999999997 4 5788899998754 3433345667777776553210 123334
Q ss_pred eecC--CcccccChhHHHHHHHcCCceE-eeCC
Q 020848 241 VRLS--AGRVRFSMPEQALCFLAGANSI-FTGE 270 (320)
Q Consensus 241 i~~~--~g~~~~~~~~~~~~~~~Gan~~-~~~~ 270 (320)
+.+. .|.+++.... ...||.+||++ ++.+
T Consensus 239 ~~~~~~~~~ig~i~~~-s~~fC~~c~r~r~t~d 270 (331)
T PRK00164 239 FRHPDYGGEIGLIAPV-THDFCASCNRLRLTAD 270 (331)
T ss_pred EEECCCCeEEEEEeCC-CCcccccCCeEEEcCC
Confidence 4442 3444555444 34588999998 4433
No 38
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.91 E-value=3.5e-23 Score=190.77 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=156.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCH----HHHHHHHHH----HHHcCCCEEEEecccCCCCCCchhHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTK----DAVMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQIL 96 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~----eei~~~~~~----~~~~g~~~i~l~~g~~~~~ge~~~~~~l~ 96 (320)
.++++-++|+.+|.||.+....... . .+. +.++++++. ....+++.|+|+||++... ..+++.
T Consensus 8 ~lYiHiPFC~~~C~yC~f~~~~~~~----~-~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l----~~~~l~ 78 (378)
T PRK05660 8 SLYIHIPWCVQKCPYCDFNSHALKG----E-VPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLF----SAEAIQ 78 (378)
T ss_pred EEEEEeCCccCcCCCCCCeecCCCC----c-CCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccC----CHHHHH
Confidence 4567889999999999986532111 1 222 233333332 1124678898987643221 245566
Q ss_pred HHHHHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 97 EYVKDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 97 ~~i~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
++++.+++ .+.+ +.++++.++.+.++.|+++|+++|++++|++ +++++.+++.+++++.+++++.+++.|+.
T Consensus 79 ~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~ 158 (378)
T PRK05660 79 RLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR 158 (378)
T ss_pred HHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 66666653 2344 4567788999999999999999999999999 99999999999999999999999999997
Q ss_pred -eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCCC
Q 020848 169 -VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 169 -v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~--~~~~~~e~~~~~a~~R~~~p~ 238 (320)
+++++|+|+ ++|.+++.+.++.+.+++ +++++++.+.|.|||++... ..++.++...++..+...+..
T Consensus 159 ~v~~dli~Glpgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 230 (378)
T PRK05660 159 SFNLDLMHGLPDQSLEEALDDLRQAIALN--PPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378)
T ss_pred eEEEEeecCCCCCCHHHHHHHHHHHHhcC--CCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 799999999 999999999999999998 89999999999999998753 235666777777777666543
No 39
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.91 E-value=8e-23 Score=187.64 Aligned_cols=207 Identities=15% Similarity=0.178 Sum_probs=154.4
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcC---CCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAG---STRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~-~~~g---~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
|+++-++|+.+|.||.+....... .... --.+.+.+++... ...+ ++.|+|+||++... .+..+..+++.++.
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l-~~~~l~~ll~~i~~ 79 (360)
T TIGR00539 3 LYIHIPFCENKCGYCDFNSYENKS-GPKE-EYTQALCQDLKHALSQTDQEPLESIFIGGGTPNTL-SVEAFERLFESIYQ 79 (360)
T ss_pred EEEEeCCCcCcCCCCCCcccCcCc-cCHH-HHHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcC-CHHHHHHHHHHHHH
Confidence 567889999999999987532111 0100 0133444444432 2234 77888887643222 12334445554443
Q ss_pred hh--hcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEE
Q 020848 102 IR--DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGII 175 (320)
Q Consensus 102 ~k--~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~ 175 (320)
.. ..+.+ +.++++.++++.++.|+++|+++|++++||. +++++.+++.+++++++++++.++++|+. +.+++|+
T Consensus 80 ~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 80 HASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred hCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
Confidence 22 22344 4567788999999999999999999999999 99999999999999999999999999996 8999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC--CCCCHHHHHHHHHHHHHhCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ--KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~--~~~~~~e~~~~~a~~R~~~p 237 (320)
|+ ++|.+++.++++++.+++ +++++++.|.|.|||++... ..++.++..+++..+...+.
T Consensus 160 GlPgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~~~~~~~~~~~~~~~~~~~~~~~~~L~ 222 (360)
T TIGR00539 160 GLPLQTLNSLKEELKLAKELP--INHLSAYALSVEPNTNFEKNAKKLPDDDSCAHFDEVVREILE 222 (360)
T ss_pred CCCCCCHHHHHHHHHHHHccC--CCEEEeecceEcCCChhhhhhhcCcCHHHHHHHHHHHHHHHH
Confidence 99 999999999999999998 89999999999999998653 24567777777776655554
No 40
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=5.6e-23 Score=189.86 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=160.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.|+++-++|+.+|.||.+.... +........++.++++++.... .+++.|+|+||+ ++...+..++.+.+.++...
T Consensus 5 ~lYiHiPfC~~~C~yC~~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGt-ps~l~~~~l~~L~~~i~~~~ 81 (374)
T PRK05799 5 SLYIHIPFCKQKCLYCDFPSYS--GKEDLMMEYIKALSKEIRNSTKNKKIKSIFIGGGT-PTYLSLEALEILKETIKKLN 81 (374)
T ss_pred EEEEEeCCccCCCCCCCCCccc--CCcchHHHHHHHHHHHHHhhcCCCceeEEEECCCc-ccCCCHHHHHHHHHHHHhCC
Confidence 3566889999999999986532 1111111135667777654322 347788887764 44333445555666655432
Q ss_pred -hcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-
Q 020848 104 -DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL- 177 (320)
Q Consensus 104 -~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl- 177 (320)
..+++ +.+++..++++.++.|+++|+++|++++|+. +++++.+++.+++++++++++.+++.|++ +.+++|+|+
T Consensus 82 ~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlP 161 (374)
T PRK05799 82 KKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLP 161 (374)
T ss_pred CCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Confidence 22345 4566778999999999999999999999999 89999999999999999999999999997 999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+|.+++.++++++.+++ +++++++.+.|.|||++.. ...++.++..+++..++..+..
T Consensus 162 gqt~e~~~~~l~~~~~l~--~~~is~y~l~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 226 (374)
T PRK05799 162 NQTLEDWKETLEKVVELN--PEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKE 226 (374)
T ss_pred CCCHHHHHHHHHHHHhcC--CCEEEEeccEecCCCHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8999999999999999853 2456777778888777666543
No 41
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=2.6e-22 Score=186.25 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=159.5
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcC-CC----CHHHHHHHHHHHHH--cCCCEEEEecccCCCCCCchhHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQK-LM----TKDAVMQAAQKAKE--AGSTRFCMGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~-~~----s~eei~~~~~~~~~--~g~~~i~l~~g~~~~~ge~~~~~~l~~ 97 (320)
.|+++-++|..+|.||.|............ .- -.+.+.++++.... .+++.|+|+||++... .+..+..|++
T Consensus 12 ~lYiHiPFC~~~C~YC~f~~~~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l-~~~~l~~ll~ 90 (400)
T PRK07379 12 SAYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYVEVLCQEIAITPSFGQPLQTVFFGGGTPSLL-SVEQLERILT 90 (400)
T ss_pred EEEEEeccccCcCCCCCCccccccccccccccchHHHHHHHHHHHHHHhhccCCceeEEEECCCccccC-CHHHHHHHHH
Confidence 467788999999999999643211100000 00 13455555554322 2477888988754332 2334455555
Q ss_pred HHHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 98 YVKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 98 ~i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++..... +.+ +.++++.++.+.++.|+++|++++++++||+ +++++.++++++.+++.++++.++++|++ +++
T Consensus 91 ~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~ 170 (400)
T PRK07379 91 TLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSL 170 (400)
T ss_pred HHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 55432211 234 4567888999999999999999999999999 99999999999999999999999999998 999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
++|+|+ |||.+++.++++++.+++ +++++++.|.|.|||++.. ...++.++..+++..++..+..
T Consensus 171 dlI~GlPgqt~e~~~~tl~~~~~l~--p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 242 (400)
T PRK07379 171 DLISGLPHQTLEDWQASLEAAIALN--PTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (400)
T ss_pred EeecCCCCCCHHHHHHHHHHHHcCC--CCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999998 8999999999999999854 2456778888888887776654
No 42
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=1.5e-22 Score=184.90 Aligned_cols=186 Identities=15% Similarity=0.158 Sum_probs=147.7
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
++++-++|+.+|.||.+..... . .......++.++++++...+ .+++.|+|+||+ ++.-.+..+++|++.++.
T Consensus 3 lYiHiPFC~~~C~yC~f~~~~~-~-~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGT-Ps~l~~~~l~~ll~~i~~ 79 (350)
T PRK08446 3 LYIHIPFCESKCGYCAFNSYEN-K-HDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGT-PSTVSAKFYEPIFEIISP 79 (350)
T ss_pred EEEEeCCccCcCCCCCCcCcCC-C-cccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCc-cccCCHHHHHHHHHHHHH
Confidence 5678899999999999875321 1 11111245666666664332 267888888775 333334456667766665
Q ss_pred hhhcCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe
Q 020848 102 IRDMGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 177 (320)
Q Consensus 102 ~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 177 (320)
....+.+ +.+++..++++.++.|+++|++++++++||+ +++++.+++.++.+++.++++.+++.|+. +++++|+|+
T Consensus 80 ~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~Gl 159 (350)
T PRK08446 80 YLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDT 159 (350)
T ss_pred hcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 5222344 5567788999999999999999999999999 99999999999999999999999999996 899999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 178 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 178 -get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
++|.+++.+.++++.+++ +++++++.+.|.|||++..
T Consensus 160 Pgqt~~~~~~~l~~~~~l~--~~~is~y~L~~~~gT~l~~ 197 (350)
T PRK08446 160 PLDNKKLLKEELKLAKELP--INHLSAYSLTIEENTPFFE 197 (350)
T ss_pred CCCCHHHHHHHHHHHHhcC--CCEEEeccceecCCChhHH
Confidence 999999999999999998 8999999999999999865
No 43
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.90 E-value=4.7e-22 Score=187.51 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=154.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
.|+++-++|+.+|.||+|................+.++++++...+ .++..++|+||++ +.. ..+++.++
T Consensus 165 sLYihIPFC~~~C~YCsf~s~~~~~~~~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTP-t~L---~~~~L~~L 240 (488)
T PRK08207 165 SIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTP-TSL---TAEELERL 240 (488)
T ss_pred EEEEecCCCCCcCCCCCCccccCCCCcchHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCc-cCC---CHHHHHHH
Confidence 4566788999999999987542111111000123555555554321 2466788887743 322 23445555
Q ss_pred HHHhhh-c----Cc-eEEE---eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-
Q 020848 99 VKDIRD-M----GM-EVCC---TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI- 167 (320)
Q Consensus 99 i~~~k~-~----~~-~i~~---~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi- 167 (320)
++.+++ . ++ ++++ ++..++++.++.|+++|++++++++||. +++++.+++.++++++.++++.++++|+
T Consensus 241 l~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 241 LEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred HHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 555442 1 33 4444 3457999999999999999999999999 9999999999999999999999999999
Q ss_pred eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhC
Q 020848 168 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 168 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~----~~~~~~~e~~~~~a~~R~~~ 236 (320)
.+++++|+|+ |||.+++.++++++.+++ +++++++.+.+.|||++.. ...++.++..+++..++..+
T Consensus 321 ~In~DLI~GLPgEt~ed~~~tl~~l~~L~--pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l 392 (488)
T PRK08207 321 NINMDLIIGLPGEGLEEVKHTLEEIEKLN--PESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWA 392 (488)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhcC--cCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHH
Confidence 5999999999 999999999999999998 8999999999999999863 23567777778877765554
No 44
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=99.89 E-value=7.2e-22 Score=184.69 Aligned_cols=199 Identities=16% Similarity=0.242 Sum_probs=158.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k 103 (320)
.+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|+++|.|++.....++... ....+.++++.++
T Consensus 141 ~i~-isrGCp~~CsfC~~~~~~--g--~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~ 215 (414)
T TIGR01579 141 FIK-VQDGCNFFCSYCIIPFAR--G--RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQIL 215 (414)
T ss_pred EEE-eccCcCCCCCCCceeeec--C--CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHh
Confidence 455 699999999999875321 2 355689999999999999999999999875443333211 1134566666665
Q ss_pred hc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHH--cCCeeeeeE
Q 020848 104 DM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVRE--AGINVCSGG 173 (320)
Q Consensus 104 ~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~--~Gi~v~~~~ 173 (320)
+. ++ .+ .+++..++++.++.|+++| +..+.+++||. +++++.++++++.+++.++++.+++ .|+.+.+++
T Consensus 216 ~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi~i~~~~ 295 (414)
T TIGR01579 216 QIPGIKRIRLSSIDPEDIDEELLEAIASEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDYAFGTDI 295 (414)
T ss_pred cCCCCcEEEEeCCChhhCCHHHHHHHHhcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeeeeeE
Confidence 43 33 22 2334458999999999987 78999999999 9999999999999999999999999 899999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMIA 230 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~a 230 (320)
|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.....+...
T Consensus 296 IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~~ 352 (414)
T TIGR01579 296 IVGFPGESEEDFQETLRMVKEIE--FSHLHIFPYSARPGTPASTMKDKVPETIKKERVK 352 (414)
T ss_pred EEECCCCCHHHHHHHHHHHHhCC--CCEEEeeecCCCCCCchhhCCCCCCHHHHHHHHH
Confidence 9999 999999999999999998 889999999999999998765 456655444443
No 45
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=159.05 Aligned_cols=235 Identities=17% Similarity=0.285 Sum_probs=183.6
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..++++++.|.++|.+|+... ...+- .-+.+++++...++.+.|...+.|+||....+ ...++.+.+.++++|
T Consensus 12 ~sISVTG~yC~lnC~HCg~~~--L~~Mi---~vt~~~l~k~~~el~kkGy~g~llSGGm~srg--~VPl~kf~d~lK~lk 84 (275)
T COG1856 12 ISISVTGAYCSLNCPHCGRHY--LEHMI---KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRG--KVPLWKFKDELKALK 84 (275)
T ss_pred ceEEEeccceEecChHHHHHH--HHHhc---ccchHHHHHHHHHHHhcCceeEEEeCCcCCCC--CccHHHHHHHHHHHH
Confidence 456779999999999997532 21221 14558888888899999999999988865443 356788999999999
Q ss_pred -hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCC
Q 020848 104 -DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL-GEA 180 (320)
Q Consensus 104 -~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get 180 (320)
+.++.+..+.|..+++.++.|+++++|.+++.+=+-+++.+.+.+ ..+.+++++.++.+++.|+++..++++|+ .-.
T Consensus 85 e~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gk 164 (275)
T COG1856 85 ERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGK 164 (275)
T ss_pred HhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCc
Confidence 458888899999999999999999999998865443344433333 67899999999999999999999999999 433
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcc--cccChhHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR--VRFSMPEQALC 258 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~--~~~~~~~~~~~ 258 (320)
.+.-.+.++.+.+.. ++.+.+..|+|.|||.|++.++++.+|..+.+..||..+|+ .+.+.+.+ ..-.-..+..+
T Consensus 165 i~~e~kaIdiL~~~~--~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~a 241 (275)
T COG1856 165 IHGEFKAIDILVNYE--PDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEA 241 (275)
T ss_pred ccchHHHHHHHhcCC--CCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHH
Confidence 344456777778776 88999999999999999999999999999999999999999 33443222 11122456778
Q ss_pred HHcCCceEee
Q 020848 259 FLAGANSIFT 268 (320)
Q Consensus 259 ~~~Gan~~~~ 268 (320)
..+|.|.+..
T Consensus 242 v~~gVd~It~ 251 (275)
T COG1856 242 VLAGVDRITF 251 (275)
T ss_pred HHcCCceeec
Confidence 8999999843
No 46
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.89 E-value=6.4e-22 Score=182.71 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=156.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCC--CcCCCCHHHHHHHHHHHHH-c-----CCCEEEEecccCCCCCCchhHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVK--GQKLMTKDAVMQAAQKAKE-A-----GSTRFCMGAAWRDTIGRKTNFNQIL 96 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~--~~~~~s~eei~~~~~~~~~-~-----g~~~i~l~~g~~~~~ge~~~~~~l~ 96 (320)
.|+++-++|+.+|.||.+......... .....-.+.+.++++...+ . .++.++|+||++.... +..+..|+
T Consensus 4 ~lYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~~~i~~i~~GGGTPs~l~-~~~l~~ll 82 (375)
T PRK05628 4 GVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLG-AEGLARVL 82 (375)
T ss_pred EEEEEeCCcCCcCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhhccCCCceeEEEeCCCccccCC-HHHHHHHH
Confidence 356678899999999998643211100 0000125667777765443 2 3677888876433222 33444455
Q ss_pred HHHHHhhhc--CceE--EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 97 EYVKDIRDM--GMEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 97 ~~i~~~k~~--~~~i--~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.++..... +.++ .+++..++++.++.|+++|+++|++++||. +++++.+++.++.++++++++.+++.|++ +.
T Consensus 83 ~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~ 162 (375)
T PRK05628 83 DAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVN 162 (375)
T ss_pred HHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 544443221 3443 457788999999999999999999999999 99999999999999999999999999998 99
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ +||.+++.++++++.+++ +++++++.+.+.|||++.. .+.++.++...++..++..+.
T Consensus 163 ~dli~GlPgqt~~~~~~tl~~~~~l~--~~~i~~y~l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 234 (375)
T PRK05628 163 LDLIYGTPGESDDDWRASLDAALEAG--VDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLS 234 (375)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhcC--CCEEEeeeeecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999998 8999999999999999854 234566666777777665543
No 47
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=7.4e-22 Score=185.67 Aligned_cols=209 Identities=18% Similarity=0.202 Sum_probs=161.3
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
.++++-++|+.+|.||.|..... . ........+.++++++...+ ..++.|+|+||+ ++.-.+..+..|++.
T Consensus 63 ~lYiHIPFC~~~C~yC~f~~~~~-~-~~~~~~Y~~~L~~Ei~~~~~~~~~~~~~i~~iy~GGGT-Ps~L~~~~l~~ll~~ 139 (449)
T PRK09058 63 LLYIHIPFCRTHCTFCGFFQNAW-N-PEAVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGT-PTALSAEDLARLITA 139 (449)
T ss_pred EEEEEeCCcCCcCCCCCCcCcCC-c-hhhHHHHHHHHHHHHHHHhhccccCCCeeeEEEECCCc-cccCCHHHHHHHHHH
Confidence 45678899999999999864311 1 11111246777777765443 236778888775 433224445555555
Q ss_pred HHHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eeeee
Q 020848 99 VKDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVCSG 172 (320)
Q Consensus 99 i~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~~~ 172 (320)
++..... +.+ +..++..++++.++.|+++|++++++++||+ +++++.+++.++.++++++++.+++.|+ .+.++
T Consensus 140 i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~D 219 (449)
T PRK09058 140 LREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCD 219 (449)
T ss_pred HHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 5543322 334 4566778999999999999999999999999 9999999999999999999999999994 69999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCC-CHHHHHHHHHHHHHhCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPV-EIWEMIRMIATARIVMPK 238 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~-~~~e~~~~~a~~R~~~p~ 238 (320)
+|+|+ |+|.+++.+.++++.+++ +++++++.|.+.|||++.. .+.+ +.++..++++.++..+..
T Consensus 220 lI~GlPgqT~e~~~~~l~~~~~l~--~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~ 291 (449)
T PRK09058 220 LIFGLPGQTPEIWQQDLAIVRDLG--LDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAK 291 (449)
T ss_pred EEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999 999999999999999998 8999999999999998753 2344 778888888888777654
No 48
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=8e-22 Score=182.27 Aligned_cols=204 Identities=18% Similarity=0.140 Sum_probs=156.1
Q ss_pred eecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 26 LSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 26 l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
++++-+.|+.+|.||.+....... ......++.++++++.+... +++.++++||+ ++.- ..+++.++++.+
T Consensus 4 lYihiPfC~~~C~yC~~~~~~~~~--~~~~~y~~~l~~Ei~~~~~~~~~~i~~i~~gGGt-pt~l---~~~~l~~ll~~i 77 (377)
T PRK08599 4 AYIHIPFCEHICYYCDFNKVFIKN--QPVDEYLDALIKEMNTYAIRPFDKLKTIYIGGGT-PTAL---SAEQLERLLTAI 77 (377)
T ss_pred EEEEeCCcCCCCCCCCCeeeccCc--cCHHHHHHHHHHHHHHhhhcCCCceeEEEeCCCC-cccC---CHHHHHHHHHHH
Confidence 445678899999999987532111 11113467788887655544 46677777653 3321 235556666555
Q ss_pred hhc-C----ce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeE
Q 020848 103 RDM-G----ME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGG 173 (320)
Q Consensus 103 k~~-~----~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~ 173 (320)
++. + .+ +.++++.++++.++.|+++|++++++++||. +++++.++++++++++.++++.+++.|+. +.+++
T Consensus 78 ~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i~~l~~~g~~~v~~dl 157 (377)
T PRK08599 78 HRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDL 157 (377)
T ss_pred HHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEee
Confidence 532 1 23 4567788999999999999999999999999 99999999999999999999999999997 88999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|+ +||.+++.++++++.+++ +++++++++.|.|||++... +.++.+...++++.+...+.
T Consensus 158 i~GlPgqt~~~~~~~l~~~~~l~--~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~ 226 (377)
T PRK08599 158 IYALPGQTIEDFKESLAKALALD--IPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEME 226 (377)
T ss_pred ecCCCCCCHHHHHHHHHHHHccC--CCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999998 88999999999999998532 23556666667666655543
No 49
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.1e-21 Score=181.16 Aligned_cols=209 Identities=13% Similarity=0.104 Sum_probs=160.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++-++|..+|.||.|....... ... ..-.+.+.++++...+ ..++.|+|+||++ +.-.+..+..|++.++
T Consensus 6 ~lYiHIPFC~~kC~yC~f~~~~~~~-~~~-~~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~L~~ll~~i~ 82 (380)
T PRK09057 6 GLYVHWPFCLAKCPYCDFNSHVRHA-IDQ-ARFAAAFLRELATEAARTGPRTLTSIFFGGGTP-SLMQPETVAALLDAIA 82 (380)
T ss_pred EEEEEeCCcCCcCCCCCCcccCcCc-CCH-HHHHHHHHHHHHHHHHHcCCCCcCeEEeCCCcc-ccCCHHHHHHHHHHHH
Confidence 4567889999999999997532111 100 0135666666664433 2477899988753 3332334455555554
Q ss_pred Hhhhc----CceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 101 DIRDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 101 ~~k~~----~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..... .+.+.++++.++.+.++.|+++|++++++++||+ +++++.++++++.++..++++.+++++..+++++|+
T Consensus 83 ~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~ 162 (380)
T PRK09057 83 RLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIY 162 (380)
T ss_pred HhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeec
Confidence 43211 2335678888999999999999999999999999 999999999999999999999999998789999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+ |+|.+++.+.++.+.+++ +++++++++.+.|||++.. ...++.++..+++..++.++..
T Consensus 163 GlPgqt~~~~~~~l~~~~~l~--p~~is~y~L~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~ 230 (380)
T PRK09057 163 ARPGQTLAAWRAELKEALSLA--ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAA 230 (380)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCeEEeecceecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99 999999999999999997 8999999999999998853 2346777778888877776643
No 50
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.9e-22 Score=185.30 Aligned_cols=208 Identities=16% Similarity=0.178 Sum_probs=152.5
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHH-HHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQA-AQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~-~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-++|..+|.||.|....... .... .-.+.++++ ++.... ..++.++++||+ ++.-.+..+..|++.+
T Consensus 8 ~lYiHIPFC~~~C~yC~f~~~~~~~-~~~~-~y~~~l~~E~~~~~~~~~~~~~i~~iy~GGGT-Ps~l~~~~l~~ll~~i 84 (370)
T PRK06294 8 ALYIHIPFCTKKCHYCSFYTIPYKE-ESVS-LYCNAVLKEGLKKLAPLRCSHFIDTVFFGGGT-PSLVPPALIQDILKTL 84 (370)
T ss_pred EEEEEeCCccCcCCCCcCcccCCCc-cCHH-HHHHHHHHHHHHHhhhhccCCceeEEEECCCc-cccCCHHHHHHHHHHH
Confidence 4567889999999999986531111 0000 002333333 222221 246778888775 3333233444444444
Q ss_pred HHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe
Q 020848 100 KDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL 177 (320)
Q Consensus 100 ~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl 177 (320)
+......+.+.+++..++++.++.|+++|++++++++||+ +++++.+.+.++.+++.++++.+++.|+. +++++|+|+
T Consensus 85 ~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli~Gl 164 (370)
T PRK06294 85 EAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGL 164 (370)
T ss_pred HhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCC
Confidence 3211112345677888999999999999999999999999 99999999999999999999999999996 999999999
Q ss_pred -CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHHHHHHHHHhCC
Q 020848 178 -GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 178 -get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|.+++.+.++.+.+++ +++++++.+.|.|||++... ..++.++...++..+...+.
T Consensus 165 Pgqt~~~~~~~l~~~~~l~--~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 165 PTQSLSDFIVDLHQAITLP--ITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred CCCCHHHHHHHHHHHHccC--CCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 89999999999999987532 23566666777776665554
No 51
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.89 E-value=8e-22 Score=167.60 Aligned_cols=180 Identities=29% Similarity=0.449 Sum_probs=143.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-----CCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
.|++|+++|.||...... + . ...++++++.+.++.+.+.| ++.+.++||+..... + +.+.++++.++
T Consensus 7 ~t~~C~~~C~yC~~~~~~--~-~-~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~-~---~~~~~~~~~~~ 78 (216)
T smart00729 7 ITRGCPRRCTFCSFPSAR--G-K-LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLS-P---EQLEELLEAIR 78 (216)
T ss_pred ecCchhccCCcCCcCccc--c-c-hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCC-H---HHHHHHHHHHH
Confidence 799999999999887532 1 1 34478999999999886654 356677765432211 1 13455555554
Q ss_pred hc-----Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcC-CeeeeeEE
Q 020848 104 DM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG-INVCSGGI 174 (320)
Q Consensus 104 ~~-----~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~G-i~v~~~~i 174 (320)
+. +.. +.++.+.++++.++.|+++|++.+.+++++. ++.++.++++.++++++++++.+++.| +.+.+.++
T Consensus 79 ~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~ 158 (216)
T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216)
T ss_pred HhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEE
Confidence 32 223 3444466899999999999999999999999 899998988999999999999999999 88999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+ +++.+++.++++++.+++ ++.+.+..|.|.|||++...+
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 159 VGLPGETEEDFEETLKLLKELG--PDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred ecCCCCCHHHHHHHHHHHHHcC--CCeEEeeeeeeCCCChHHHhc
Confidence 999 599999999999999998 788999999999999987654
No 52
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=3.1e-21 Score=181.91 Aligned_cols=188 Identities=16% Similarity=0.270 Sum_probs=154.8
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.|||++|+||..+... + +.+.+++|+|+++++.+.+.|++.|.|+|.....+|++. ..+.+.++++.+
T Consensus 157 ~~i~-I~rGC~~~CsfC~~p~~~--G--~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l 231 (459)
T PRK14338 157 VHVP-IIYGCNMSCSYCVIPLRR--G--RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAV 231 (459)
T ss_pred EEEE-cccCCCCCCCcCCeeccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHH
Confidence 3455 579999999999876421 2 235579999999999999999999999876544455542 245677777777
Q ss_pred hhc-Cc---eEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~---~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. ++ .+. .++..++++.++.|+++ |+..+.+++|+. +++++.+++++++++++++++.+++. |+.+.++
T Consensus 232 ~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi~i~~d 311 (459)
T PRK14338 232 HEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDVSLTTD 311 (459)
T ss_pred HhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 753 43 332 34556899999999985 589999999999 99999999999999999999999998 7889999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||++...+
T Consensus 312 ~IvG~PgET~ed~~~ti~~l~~l~--~~~v~i~~ysp~pGT~~~~~~ 356 (459)
T PRK14338 312 IIVGHPGETEEQFQRTYDLLEEIR--FDKVHIAAYSPRPGTLAAEME 356 (459)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEeEEEecCCCCCChhhhCc
Confidence 99999 999999999999999998 788999999999999987653
No 53
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=2e-21 Score=182.24 Aligned_cols=193 Identities=15% Similarity=0.202 Sum_probs=155.4
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|+|.....++.+.....+.++++.+.
T Consensus 151 a~l~-isrGC~~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~ 225 (445)
T PRK14340 151 AFVP-VMRGCNNMCAFCVVPFTR--G--RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVS 225 (445)
T ss_pred EEEE-eccCCCCCCCCCCccccc--C--CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHh
Confidence 4455 689999999999876321 2 3455899999999999999999999998765444443322234566666665
Q ss_pred hc--CceE--E-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM--GMEV--C-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~--~~~i--~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. +..+ . .++..++++.++.|+++ |+..+.+++|+. +++++.++++.+.+++.++++.+++. |+.+.+++
T Consensus 226 ~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi~i~td~ 305 (445)
T PRK14340 226 RAAPEMRIRFTTSHPKDISESLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGVTLSTDL 305 (445)
T ss_pred hcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEeccE
Confidence 32 2332 2 23445789999999986 799999999999 99999999999999999999999998 99999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIW 223 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~ 223 (320)
|+|+ |||++++.++++++++++ ++.+.++.|.|.|||+++. .+ ..+.+
T Consensus 306 IvGfPgET~edf~~tl~~~~~~~--~~~~~~f~~sp~pGT~~~~~~~~~v~~~ 356 (445)
T PRK14340 306 IAGFCGETEEDHRATLSLMEEVR--FDSAFMFYYSVRPGTLAARTLPDDVPEE 356 (445)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeEEecCCCCChhhhhCCCCCCHH
Confidence 9999 999999999999999998 8899999999999999874 43 35543
No 54
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.89 E-value=2e-21 Score=182.56 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=153.6
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|+++|.|.+.....+|....-..+.++++.+.
T Consensus 148 a~v~-i~rGC~~~CsFC~~p~~~--g--~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~ 222 (437)
T PRK14331 148 AYVT-VMRGCDKKCTYCVVPKTR--G--KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVA 222 (437)
T ss_pred EEEE-eccCcCCCCccCCcccCC--C--CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHh
Confidence 4555 589999999999876421 2 3455799999999999999999999998754443332211123555555554
Q ss_pred hc-C---ceEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM-G---MEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~-~---~~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. + +... .++..++++.++.|+++ |+..+.+++|+. +++++.|+++.+.+++.++++.+++. |+.+.+++
T Consensus 223 ~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi~i~~d~ 302 (437)
T PRK14331 223 EIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDITFSTDI 302 (437)
T ss_pred cCCCccEEEEeccCcccCCHHHHHHHHcCCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCCEEecCE
Confidence 32 3 2322 23445899999999998 589999999999 99999999999999999999999998 99999999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWE 224 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e 224 (320)
|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||++...+ ..+.++
T Consensus 303 IvG~PgET~ed~~~tl~~l~~l~--~~~i~~f~~sp~pGT~~~~~~~~~~~~~ 353 (437)
T PRK14331 303 IVGFPTETEEDFEETLDVLKKVE--FEQVFSFKYSPRPGTPAAYMEGQEPDEV 353 (437)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--cceeeeeEecCCCCcchhhCCCCCCHHH
Confidence 9999 999999999999999998 788999999999999998765 344443
No 55
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.89 E-value=1.2e-21 Score=183.44 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=161.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----CCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----GSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~----g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++.+.|+.+|.||.+....... ........+.++++++...+. .+..+.|+||+ ++.-.+..+++|++.++
T Consensus 41 ~lYvHIPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGT-Ps~l~~~~l~~Ll~~i~ 118 (430)
T PRK08208 41 SLYIHIPFCEMRCGFCNLFTRTGAD-AEFIDSYLDALIRQAEQVAEALAPARFASFAVGGGT-PTLLNAAELEKLFDSVE 118 (430)
T ss_pred EEEEEeCCccCcCCCCCCccccCCc-cchHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCc-cccCCHHHHHHHHHHHH
Confidence 4566789999999999886432111 011112356677776654432 35678887664 44333445566666666
Q ss_pred Hhhhc---Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeE
Q 020848 101 DIRDM---GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGG 173 (320)
Q Consensus 101 ~~k~~---~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~ 173 (320)
..... +.+ +.+++..++++.++.|+++|+++|++++||. ++.++.+.++++.+++.++++.+++.|+. +.+++
T Consensus 119 ~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dl 198 (430)
T PRK08208 119 RVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDL 198 (430)
T ss_pred HhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 54322 234 4567778999999999999999999999999 99999999999999999999999999998 78999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
|+|+ ++|.+++.++++++.+++ +++++++++.+.|||++.....++.++..+++..++..+.
T Consensus 199 I~GlP~qt~e~~~~~l~~~~~l~--~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~ 261 (430)
T PRK08208 199 IYGIPGQTHASWMESLDQALVYR--PEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLL 261 (430)
T ss_pred ecCCCCCCHHHHHHHHHHHHhCC--CCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999998 8999999999999999987665667777888877766654
No 56
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=6.7e-22 Score=182.46 Aligned_cols=209 Identities=14% Similarity=0.131 Sum_probs=158.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYVK 100 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~ 100 (320)
.++++-++|..+|.||.|......... .. .-.+.+.++++.... ..++.|+|+||++ +.-.+..++.+++.++
T Consensus 13 ~lYiHiPFC~~~C~yC~f~~~~~~~~~-~~-~Y~~aL~~Ei~~~~~~~~~~~i~tiy~GGGTP-s~l~~~~l~~ll~~i~ 89 (390)
T PRK06582 13 SIYIHWPFCLSKCPYCDFNSHVASTID-HN-QWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTP-SLMNPVIVEGIINKIS 89 (390)
T ss_pred EEEEEeCCCcCcCCCCCCeeccCCCCC-HH-HHHHHHHHHHHHHHHHccCCceeEEEECCCcc-ccCCHHHHHHHHHHHH
Confidence 456788999999999999753221100 00 113334444443322 2477888888753 3333445555666555
Q ss_pred Hhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 101 DIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 101 ~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..... ..+ +.+++..++++.++.|+++|++++++++||+ +++++.+.+.++.++.+++++.+++.+..+++++|+
T Consensus 90 ~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~~ai~~~~~~~~~v~~DlI~ 169 (390)
T PRK06582 90 NLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIY 169 (390)
T ss_pred HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCcEEEEeec
Confidence 43222 223 5678888999999999999999999999999 999999999999999999999999986679999999
Q ss_pred Ee-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 GL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|+ |+|.+++.+.++.+.+++ +++|+++.+.+.|||++.. ...++.++..+++..++..+..
T Consensus 170 GlPgqt~e~~~~~l~~~~~l~--p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~ 237 (390)
T PRK06582 170 ARSGQTLKDWQEELKQAMQLA--TSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLES 237 (390)
T ss_pred CCCCCCHHHHHHHHHHHHhcC--CCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 99 999999999999999998 8999999999999999853 2456778888888877766543
No 57
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=99.89 E-value=1.9e-21 Score=180.26 Aligned_cols=210 Identities=12% Similarity=0.107 Sum_probs=157.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCC-CCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGV-KGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~-~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-++|..+|.||.|........ ......-.+.+.++++.... ..++.|+|+||++.. -.+..+..|++.+
T Consensus 21 ~lYiHIPFC~~~C~yC~f~~~~~~~~~~~~~~~Y~~~l~~ei~~~~~~~~~~~i~siy~GGGTPs~-L~~~~L~~ll~~i 99 (394)
T PRK08898 21 SLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSL-LSAAGLDRLLSDV 99 (394)
T ss_pred EEEEEeCCccCcCCCCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCcCC-CCHHHHHHHHHHH
Confidence 45678899999999999975422110 00000134666666664432 237788898875433 2233444555544
Q ss_pred HHhhhc--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE
Q 020848 100 KDIRDM--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI 174 (320)
Q Consensus 100 ~~~k~~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i 174 (320)
+..... +.+ +.++++.++.+.++.|+++|++++++++||+ +++++.+++.++.++..++++.+++.+..+++++|
T Consensus 100 ~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~~~~~~~~~i~~~~~~~~~v~~dlI 179 (394)
T PRK08898 100 RALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLM 179 (394)
T ss_pred HHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCceEEEEE
Confidence 443322 133 5677888999999999999999999999999 99999999999999999999999998767999999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC--CCCHHHHHHHHHHHHHhCC
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK--PVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~--~~~~~e~~~~~a~~R~~~p 237 (320)
+|+ |+|.+++.+.++.+.+++ +++++++.|.+.|||++.... .++.++...++..+...+.
T Consensus 180 ~GlPgqt~~~~~~~l~~~~~l~--p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (394)
T PRK08898 180 YALPGQTLDEALADVETALAFG--PPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLA 243 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHhcC--CCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHH
Confidence 999 999999999999999998 899999999999999986542 3556666777776665553
No 58
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.89 E-value=3e-21 Score=173.42 Aligned_cols=236 Identities=20% Similarity=0.247 Sum_probs=174.3
Q ss_pred CCCeeEEEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHH
Q 020848 16 SMEEVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQI 95 (320)
Q Consensus 16 ~~~~v~~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l 95 (320)
||.++... -++ .|++||++|.||...... ......++.|++.+.++.+...|++.|.|+| |||+..+++
T Consensus 5 ~gr~~~~l-~i~-vT~~CNl~C~yC~~~~~~---~~~~~~ls~eei~~~i~~~~~~gi~~I~~tG------GEPll~~~l 73 (302)
T TIGR02668 5 FGRPVTSL-RIS-VTDRCNLSCFYCHMEGED---RSGGNELSPEEIERIVRVASEFGVRKVKITG------GEPLLRKDL 73 (302)
T ss_pred CCCccCeE-EEE-EcccccCCCCCCCccccC---CCccCcCCHHHHHHHHHHHHHcCCCEEEEEC------cccccccCH
Confidence 56676542 445 699999999999775321 1123459999999999888889999998876 467778889
Q ss_pred HHHHHHhhhcCc-eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 96 LEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 96 ~~~i~~~k~~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
.++++.+++.++ .+ .+|||.+..+.++.|+++|++.|++|+|+. ++.|+.+++..++++++++++.+++.|+. +.+
T Consensus 74 ~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i 153 (302)
T TIGR02668 74 IEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKL 153 (302)
T ss_pred HHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEE
Confidence 999999987777 44 577898778899999999999999999999 89999998888999999999999999997 888
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CCCCCCCCCHHHHHHHHHHHHHhCC------CceeecC
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PLQDQKPVEIWEMIRMIATARIVMP------KAMVRLS 244 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~~~~~~~~~~e~~~~~a~~R~~~p------~~~i~~~ 244 (320)
++++-.|.|.+++.++++++.+++ + .+.+..++|.+.. ........+.+++...+...-...+ ...+.+.
T Consensus 154 ~~v~~~g~n~~ei~~~~~~~~~~g--~-~~~~ie~~p~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR02668 154 NMVVLKGINDNEIPDMVEFAAEGG--A-ILQLIELMPPGEGEKEFKKYHEDIDPIEEELEKMADRVRTRRMHNRPKYFIP 230 (302)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcC--C-EEEEEEEeECCCCccchhhceecHHHHHHHHHHhcccccccCCCCCcEEEeC
Confidence 887745799999999999999997 4 4788889987632 2222233455665555443211011 1111222
Q ss_pred C-cccccChhHHHH-HHHcCCceE
Q 020848 245 A-GRVRFSMPEQAL-CFLAGANSI 266 (320)
Q Consensus 245 ~-g~~~~~~~~~~~-~~~~Gan~~ 266 (320)
. +..++.... .. .+|.+||.+
T Consensus 231 ~~~~~g~i~~~-~~~~fC~~c~r~ 253 (302)
T TIGR02668 231 GGVEVEVVKPM-DNPVFCAHCTRL 253 (302)
T ss_pred CCeEEEEECcc-CCCCccccCCeE
Confidence 2 344454443 23 478899988
No 59
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=99.89 E-value=3.4e-21 Score=180.83 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=154.7
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHhh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIR 103 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k 103 (320)
.+. ++.||+++|+||..+... + +++..++++|+++++.+.+.|++.|.|.+.....+|.+. ..+++.++++.+.
T Consensus 138 ~i~-~srGC~~~CsfC~~~~~~--G--~~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~ 212 (430)
T TIGR01125 138 YLK-VAEGCNRRCAFCIIPSIR--G--KLRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELG 212 (430)
T ss_pred EEE-EccCCCCCCCcCCeeccc--C--CceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHH
Confidence 455 699999999999876432 2 345589999999999999999999998764333344321 1245666666666
Q ss_pred hcC-ce---E-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DMG-ME---V-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~~-~~---i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+.+ +. + .+.+..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+++
T Consensus 213 ~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~ 292 (430)
T TIGR01125 213 KVGGIYWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTF 292 (430)
T ss_pred hcCCccEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEE
Confidence 443 32 2 2334568999999999995 78999999999 99999999999999999999999998 56688999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 226 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~ 226 (320)
|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.++..
T Consensus 293 I~G~PgET~e~~~~t~~fl~~~~--~~~~~~~~~sp~pGT~~~~~~~~i~~~~~~ 345 (430)
T TIGR01125 293 IVGFPGETEEDFQELLDFVEEGQ--FDRLGAFTYSPEEGTDAFALPDQVPEEVKE 345 (430)
T ss_pred EEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCCccccCCCCCCHHHHH
Confidence 9999 999999999999999998 789999999999999997654 35555433
No 60
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=7.2e-21 Score=179.95 Aligned_cols=194 Identities=15% Similarity=0.248 Sum_probs=155.4
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--HHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 100 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~ 100 (320)
...+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.|.....+|.... ...+.++++
T Consensus 213 ~a~v~-I~~GC~~~CsFC~vp~~r--G--~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~ 287 (509)
T PRK14327 213 KAWVN-IMYGCDKFCTYCIVPYTR--G--KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMD 287 (509)
T ss_pred EEEEE-ecCCCCCCCcCCcccccC--C--CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHH
Confidence 45666 689999999999876321 2 3455899999999999999999999998765444443211 123556666
Q ss_pred HhhhcCce---EE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 101 DIRDMGME---VC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 101 ~~k~~~~~---i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
.+.+.++. +. .++..++++.++.++++| +..+.+++|+. +++++.|+++++.+++++.++.+++. ++.+.+
T Consensus 288 ~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~t 367 (509)
T PRK14327 288 EIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTT 367 (509)
T ss_pred HHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEee
Confidence 66654442 32 234558999999999999 67999999999 99999999999999999999999997 677888
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIW 223 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~ 223 (320)
++|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+++..+ ..+.+
T Consensus 368 diIvGfPgET~edf~~Tl~~v~~l~--~d~~~~f~ysprpGT~a~~~~~~vp~~ 419 (509)
T PRK14327 368 DIIVGFPNETDEQFEETLSLYREVG--FDHAYTFIYSPREGTPAAKMKDNVPME 419 (509)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHcC--CCeEEEeeeeCCCCCchHhCcCCCCHH
Confidence 999999 999999999999999998 789999999999999997654 34443
No 61
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=99.88 E-value=2.9e-21 Score=181.47 Aligned_cols=199 Identities=14% Similarity=0.246 Sum_probs=156.9
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh-HHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +++..++|+|+++++.+.+.|++.|.|++.....+|.+.. ...+.++++.+
T Consensus 141 ~~i~-~srGC~~~CsfC~~~~~~--g--~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 215 (429)
T TIGR00089 141 AFLK-IQEGCDKFCTYCIVPYAR--G--RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLREL 215 (429)
T ss_pred EEEE-HHhCcCCCCCcCceeccc--C--CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHH
Confidence 3444 689999999999876422 2 4555899999999999999999999998754333332211 12466666666
Q ss_pred hhc-Cce-EE---EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcC--Ceeeee
Q 020848 103 RDM-GME-VC---CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAG--INVCSG 172 (320)
Q Consensus 103 k~~-~~~-i~---~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~G--i~v~~~ 172 (320)
++. ++. +. .++..++++.++.|+++| +..+.+++||. +++++.++++++.+++.+.++.+++.| +.+.++
T Consensus 216 ~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i~i~~~ 295 (429)
T TIGR00089 216 SKIDGIERIRFGSSHPDDVTDDLIELIAENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDAAITTD 295 (429)
T ss_pred hcCCCCCEEEECCCChhhcCHHHHHHHHhCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEee
Confidence 543 332 22 234457899999999995 89999999999 999999999999999999999999988 789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.+...+..
T Consensus 296 ~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pgT~~~~~~~~v~~~~~~~r~ 352 (429)
T TIGR00089 296 IIVGFPGETEEDFEETLDLVEEVK--FDKLHSFIYSPRPGTPAADMKDQVPEEVKKERL 352 (429)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeccccCCCCCCchhhCCCCCCHHHHHHHH
Confidence 99999 999999999999999998 889999999999999998765 35554433333
No 62
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=99.88 E-value=1.3e-20 Score=176.03 Aligned_cols=194 Identities=15% Similarity=0.282 Sum_probs=150.2
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKD 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~ 101 (320)
..+. .++||+++|+||..+.. . + +++..++|+|+++++.+.+.|+++|.|+|.+...+|.+ ..+.++++.+..
T Consensus 135 ~~i~-isrGC~~~CsfC~ip~~-~-G--~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~ 209 (420)
T TIGR01578 135 EIIP-INQGCLGNCSYCITKHA-R-G--KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITE 209 (420)
T ss_pred EEEE-EccCCCCCCCCCccccC-C-C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHh
Confidence 4565 69999999999987532 1 2 35558999999999999999999999987544434322 234555555444
Q ss_pred hhh-cCceEE-EeCC---CCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 102 IRD-MGMEVC-CTLG---MLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 102 ~k~-~~~~i~-~~~g---~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. ..+.+. .++. .++++.++.++..+ +..+.+++|+. +++++.++++.+.+++.++++.+++. |+.+.++
T Consensus 210 i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i~i~~~ 289 (420)
T TIGR01578 210 IPGEFRLRVGMMNPKNVLEILDELANVYQHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDLTLSTD 289 (420)
T ss_pred CCCCcEEEEcCCCCCcccccCHHHHHHHhcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence 432 123332 2222 24567777776555 58899999999 99999999999999999999999998 8889999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWE 224 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e 224 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+..+.+.
T Consensus 290 ~IvG~PgET~ed~~~t~~~~~~~~--~~~i~~~~~~p~pGT~~~~~~~v~~~~ 340 (420)
T TIGR01578 290 IIVGFPTETDDDFEETMELLRKYR--PEKINITKFSPRPGTPAAKMKRIPTNI 340 (420)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhC--CCEEEEEEeeCCCCCcccCCCCCCHHH
Confidence 99999 999999999999999998 789999999999999998766555543
No 63
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.88 E-value=1.1e-20 Score=176.37 Aligned_cols=198 Identities=15% Similarity=0.217 Sum_probs=154.5
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch----hHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT----NFNQILEY 98 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~----~~~~l~~~ 98 (320)
...+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|+++|.|++.....+|... ....+.++
T Consensus 128 ~a~i~-isrGC~~~CsFC~ip~~r--G--~~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~L 202 (420)
T PRK14339 128 KSLVN-ISIGCDKKCTYCIVPHTR--G--KEISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDL 202 (420)
T ss_pred EEEEE-ecCCCCCCCCcCCccccc--C--CCCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHH
Confidence 35666 699999999999876432 2 223369999999999999999999999875443333211 11235666
Q ss_pred HHHhhhc-Cc---eE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCe
Q 020848 99 VKDIRDM-GM---EV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GIN 168 (320)
Q Consensus 99 i~~~k~~-~~---~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~ 168 (320)
++.+.+. ++ .+ ..++-.++++.++.|+++ |+..+.+++|+. +++++.|+++.+.++++++++.+++. |+.
T Consensus 203 l~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i~ 282 (420)
T PRK14339 203 LDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEVS 282 (420)
T ss_pred HHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCCE
Confidence 6665542 33 22 223345789999999998 589999999999 99999999999999999999999997 778
Q ss_pred eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHH
Q 020848 169 VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIR 227 (320)
Q Consensus 169 v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~ 227 (320)
+.+++|+|+ |||++|+.++++++.+++ ++.+.++.|.|.||||+.+.+ .++.+...+
T Consensus 283 i~~d~IvGfPgETeedf~~Tl~fl~~l~--~~~~~~f~~sp~pGT~a~~~~~~v~~~~k~~ 341 (420)
T PRK14339 283 ISTDIIVGFPGESDKDFEDTMDVLEKVR--FEQIFSFKYSPRPLTEAAAWKNQVDEEVASE 341 (420)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhcC--CCEEeeEecCCCCCCchhhCCCCCCHHHHHH
Confidence 999999999 999999999999999997 788899999999999987764 455544333
No 64
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=99.87 E-value=7.3e-21 Score=180.81 Aligned_cols=178 Identities=17% Similarity=0.291 Sum_probs=146.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
++.||+++|.||..+.... + ..++..++|.|+++++.+.+. |++.|.|.++. .. ...+.+.++++.+++.+
T Consensus 202 tsRGCp~~C~FC~~~~~~~-g-~~~r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~-f~----~~~~~~~~l~~~l~~~~ 274 (472)
T TIGR03471 202 TGRGCPSKCTFCLWPQTVG-G-HRYRTRSAESVIEEVKYALENFPEVREFFFDDDT-FT----DDKPRAEEIARKLGPLG 274 (472)
T ss_pred ecCCCCCCCCCCCCCccCC-C-CceEeCCHHHHHHHHHHHHHhcCCCcEEEEeCCC-CC----CCHHHHHHHHHHHhhcC
Confidence 6999999999998653221 1 245568999999999988774 78889887542 11 13355666666666666
Q ss_pred ceEEE-eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHH
Q 020848 107 MEVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEED 183 (320)
Q Consensus 107 ~~i~~-~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed 183 (320)
+.... +...++++.++.|+++|+.++.+++||. +++++.++++.+.++..++++.+++.|+.+..++|+|+ +||.++
T Consensus 275 i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~ 354 (472)
T TIGR03471 275 VTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRET 354 (472)
T ss_pred ceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHH
Confidence 55322 2234799999999999999999999999 99999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+.++++++.+++ ++.+.++.+.|.|||++.
T Consensus 355 ~~~ti~~~~~l~--~~~~~~~~l~P~PGT~l~ 384 (472)
T TIGR03471 355 IRKTIDFAKELN--PHTIQVSLAAPYPGTELY 384 (472)
T ss_pred HHHHHHHHHhcC--CCceeeeecccCCCcHHH
Confidence 999999999998 788999999999999875
No 65
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.4e-20 Score=177.36 Aligned_cols=198 Identities=15% Similarity=0.198 Sum_probs=154.1
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc--hhHHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK--TNFNQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~--~~~~~l~~~i~~ 101 (320)
.+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|++.|.|.+.....+ +.. .....+.++++.
T Consensus 150 ~i~-isrGCp~~CsFC~~p~~~--G--~~~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~ 224 (444)
T PRK14325 150 FVS-IMEGCDKYCTFCVVPYTR--G--EEVSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRL 224 (444)
T ss_pred EEE-hhhCCCCCCCccccCccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHH
Confidence 344 589999999999876421 2 22347999999999999999999999876543332 210 012245555655
Q ss_pred hhhc-C---ceEE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 102 IRDM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 102 ~k~~-~---~~i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
+.+. + +... .++..++++.++.|+++| +..+.+++||. +++++.++++.+.+++.++++.+++. |+.+.+
T Consensus 225 l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi~v~~ 304 (444)
T PRK14325 225 VAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDIAISS 304 (444)
T ss_pred HHhcCCccEEEEccCCcccCCHHHHHHHHcCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCCEEEe
Confidence 5543 3 3332 234558999999999985 89999999999 99999999999999999999999997 788999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
++|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++...+ ..+.+...+..
T Consensus 305 ~~IvG~PgET~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~~r~ 362 (444)
T PRK14325 305 DFIVGFPGETDEDFEATMKLIEDVG--FDQSFSFIYSPRPGTPAADLPDDVPEEVKKERL 362 (444)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCeeeeeeccCCCCCchhhCCCCCCHHHHHHHH
Confidence 999999 999999999999999998 788999999999999998765 45555444443
No 66
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.2e-20 Score=177.26 Aligned_cols=196 Identities=16% Similarity=0.237 Sum_probs=152.1
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-CchhHHHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-RKTNFNQILEYVKD 101 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g-e~~~~~~l~~~i~~ 101 (320)
...+. .+.||+++|.||..+... + +....++|+|+++++.+.+.|++.|.|++.....+| ++.....+.++++.
T Consensus 139 ~~~l~-isrGC~~~CsfC~~p~~~--g--~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~ 213 (440)
T PRK14334 139 SAHLT-IMRGCNHHCTYCIVPTTR--G--PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRL 213 (440)
T ss_pred EEEEE-eccCCCCCCcCCCcchhc--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHH
Confidence 34555 689999999999886421 2 223478999999999999999999998764322222 22222344455555
Q ss_pred hhhcCc---eEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeee
Q 020848 102 IRDMGM---EVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSG 172 (320)
Q Consensus 102 ~k~~~~---~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~ 172 (320)
+++.++ .+. .++..++++.++.|+++ |+.++.+++|+. +++++.++++++.++++++++.+++.|.. +.++
T Consensus 214 l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~~i~i~~d 293 (440)
T PRK14334 214 VGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALPDVVLSTD 293 (440)
T ss_pred HHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 554443 332 23455899999999995 589999999999 99999999999999999999999998754 7889
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC-CCCCHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-KPVEIWEM 225 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~-~~~~~~e~ 225 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++... ...+.++.
T Consensus 294 ~IvG~PgEt~ed~~~tl~~i~~l~--~~~i~~f~ysp~pGT~~~~~~~~v~~~~~ 346 (440)
T PRK14334 294 IIVGFPGETEEDFQETLSLYDEVG--YDSAYMFIYSPRPGTPSYKHFQDLPREVK 346 (440)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEeeeeEeeCCCCChhHhccCCCCHHHH
Confidence 99999 999999999999999998 88999999999999998654 34555443
No 67
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.8e-20 Score=178.01 Aligned_cols=188 Identities=16% Similarity=0.228 Sum_probs=150.5
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.. .....+.++++.+
T Consensus 159 a~v~-isrGCp~~CsFC~ip~~r--G--~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l 233 (502)
T PRK14326 159 AWVS-ISVGCNNTCTFCIVPSLR--G--KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRAC 233 (502)
T ss_pred EEEE-EccCCCCCCccCceeccC--C--CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHH
Confidence 4555 699999999999876432 2 23457999999999999999999999987544444321 1223455555555
Q ss_pred hhc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
... ++ .+ +.++..++++.++.|+++| +..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 234 ~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i~i~~~ 313 (502)
T PRK14326 234 GEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDAAITTD 313 (502)
T ss_pred HhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 432 32 32 2334458999999999997 89999999999 99999999999999999999999996 7789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||+++..+
T Consensus 314 ~IvGfPgET~edf~~Tl~~i~~~~--~~~~~~f~~sp~pGT~~~~~~ 358 (502)
T PRK14326 314 IIVGFPGETEEDFQATLDVVREAR--FSSAFTFQYSKRPGTPAAEME 358 (502)
T ss_pred EEEECCCCCHHHHHHHHHHHHHcC--CCEEEEEeecCCCCChHHhCc
Confidence 99999 999999999999999997 788899999999999998764
No 68
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.6e-20 Score=176.14 Aligned_cols=192 Identities=14% Similarity=0.191 Sum_probs=153.4
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+.+...++.. ...+.++++.+.
T Consensus 156 a~l~-isrGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~--~~~l~~Ll~~l~ 228 (449)
T PRK14332 156 AFVT-IMRGCNNFCTFCVVPYTR--G--RERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ--STDFAGLIQMLL 228 (449)
T ss_pred EEEE-ecCCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC--cccHHHHHHHHh
Confidence 4555 589999999999876321 2 34558999999999999999999999987655444421 234666666654
Q ss_pred hc-C---ceEE-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeE
Q 020848 104 DM-G---MEVC-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSGG 173 (320)
Q Consensus 104 ~~-~---~~i~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~ 173 (320)
+. + +.+. .++..++++.++.++++| +..+.+++|+. +++++.++++.+.+++.++++.+++. ++.+.+++
T Consensus 229 ~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i~td~ 308 (449)
T PRK14332 229 DETTIERIRFTSPHPKDFPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGITTDI 308 (449)
T ss_pred cCCCcceEEEECCCcccCCHHHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 32 3 2222 234457899999999998 88999999999 99999999999999999999999997 67788999
Q ss_pred EEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC-CCC-CCCHHH
Q 020848 174 IIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ-DQK-PVEIWE 224 (320)
Q Consensus 174 i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~-~~~-~~~~~e 224 (320)
|+|+ |||++|+.++++++++++ ++.+.++.|.|.|||+.+ ..+ .++.++
T Consensus 309 IvGfPgET~edf~~tl~~v~~l~--~~~~~~f~ys~~~GT~a~~~~~~~v~~~~ 360 (449)
T PRK14332 309 IVGFPNETEEEFEDTLAVVREVQ--FDMAFMFKYSEREGTMAKRKLPDNVPEEV 360 (449)
T ss_pred EeeCCCCCHHHHHHHHHHHHhCC--CCEEEEEEecCCCCChhHHhCcCCCCHHH
Confidence 9999 999999999999999998 889999999999999987 343 344444
No 69
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=2.4e-20 Score=175.78 Aligned_cols=198 Identities=15% Similarity=0.189 Sum_probs=154.2
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-c--hhHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-K--TNFNQILEYVK 100 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~--~~~~~l~~~i~ 100 (320)
..+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|+++|.|.|.....++. . .....+.++++
T Consensus 154 ~~i~-I~rGC~~~CsfC~~p~~r--G--~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~ 228 (455)
T PRK14335 154 SFIP-IMNGCNNFCSYCIVPYVR--G--REISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLR 228 (455)
T ss_pred EEEE-hhcCCCCCCCCCCcccCC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHH
Confidence 3445 578999999999876422 2 2334799999999999999999999998754433321 1 01123455555
Q ss_pred Hhh----h-cCce----EEEeCCCCCHHHHHHHHH--hccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--C
Q 020848 101 DIR----D-MGME----VCCTLGMLEKHQAIELKK--AGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--G 166 (320)
Q Consensus 101 ~~k----~-~~~~----i~~~~g~l~~e~l~~L~~--aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--G 166 (320)
.+. . .++. ...++..++++.++.|++ .|+..+.+++|+. +++++.|+++.+.+++.++++.+++. |
T Consensus 229 ~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pg 308 (455)
T PRK14335 229 HIVRRAEVTDQIRWIRFMSSHPKDLSDDLIATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPN 308 (455)
T ss_pred HHHHhhcccCCceEEEEeecCcccCCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCC
Confidence 542 1 1332 234456689999999998 4899999999999 99999999999999999999999998 9
Q ss_pred CeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHH
Q 020848 167 INVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRM 228 (320)
Q Consensus 167 i~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~ 228 (320)
+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++.+.+ .++.+...+.
T Consensus 309 i~i~~d~IvGfPgET~edf~~Tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~k~~R 370 (455)
T PRK14335 309 VALSTDILIGFPGETEEDFEQTLDLMREVE--FDSAFMYHYNPREGTPAYDFPDRIPDEVKIAR 370 (455)
T ss_pred CEEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEEecCCCCCchhhCCCCCCHHHHHHH
Confidence 99999999999 999999999999999998 889999999999999998765 3555543333
No 70
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=1.8e-20 Score=174.84 Aligned_cols=194 Identities=14% Similarity=0.197 Sum_probs=153.8
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|++.....+|.+. ..+.+.++++.+
T Consensus 126 a~i~-i~rGC~~~CsFC~ip~~r--G--~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 200 (418)
T PRK14336 126 ANVT-IMQGCDNFCTYCVVPYRR--G--REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSAL 200 (418)
T ss_pred EEEE-eccCCCCCCccCCccccC--C--CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHH
Confidence 3455 589999999999876321 2 345589999999999999999999999876544444321 123456666665
Q ss_pred hhc-C---ceE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~---~~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
++. + +.+ ..++..++++.++.|+++ ++..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.++
T Consensus 201 ~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi~i~~d 280 (418)
T PRK14336 201 HDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDISLQTD 280 (418)
T ss_pred HhcCCccEEEEeccChhhcCHHHHHHHHhcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 532 2 332 233455789999999985 489999999999 99999999999999999999999998 9999999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIWE 224 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~e 224 (320)
+|+|+ |||.+++.++++++.+++ ++.+.++.|.|.|||++.. .+ ..+.+.
T Consensus 281 ~IvGfPGET~edf~~tl~fi~~~~--~~~~~v~~ysp~pGT~a~~~~~~~v~~~~ 333 (418)
T PRK14336 281 LIVGFPSETEEQFNQSYKLMADIG--YDAIHVAAYSPRPQTVAARDMADDVPVIE 333 (418)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEEeeecCCCCCChhHhhCccCCCHHH
Confidence 99999 999999999999999998 7889999999999999874 43 354443
No 71
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=99.87 E-value=1.8e-20 Score=176.20 Aligned_cols=194 Identities=17% Similarity=0.239 Sum_probs=153.7
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCch--hHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT--NFNQILEYVK 100 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~--~~~~l~~~i~ 100 (320)
..+. .+.||+++|+||..+... + +.+.+++|+|+++++.+.+.|++.|.|++.....+ |... ....+.++++
T Consensus 147 ~~v~-i~rGC~~~CsfC~~~~~~--G--~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~ 221 (438)
T TIGR01574 147 SFIN-IMIGCNKFCTYCIVPYTR--G--DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLR 221 (438)
T ss_pred EEee-hhcCCCCCCCCCCeeeec--C--CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHH
Confidence 4555 589999999999875321 2 23458999999999999999999999987543333 3211 1124555666
Q ss_pred Hhhh-cCce-E---EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 020848 101 DIRD-MGME-V---CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 170 (320)
Q Consensus 101 ~~k~-~~~~-i---~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~ 170 (320)
.+.+ .++. + ..++..++++.++.|+++| +..+.+++|+. +++++.++++++.++++++++.+++. |+.+.
T Consensus 222 ~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i~ 301 (438)
T TIGR01574 222 ELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSIS 301 (438)
T ss_pred HHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEe
Confidence 6653 2432 2 2345568999999999999 89999999999 99999999999999999999999987 77789
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCC-CCHHH
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP-VEIWE 224 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~-~~~~e 224 (320)
+++|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++.+.+. .+.+.
T Consensus 302 ~d~IvG~PgEt~ed~~~tl~~i~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~ 355 (438)
T TIGR01574 302 TDIIVGFPGETEEDFEETLDLLREVE--FDSAFSFIYSPRPGTPAADMPDQIPEEI 355 (438)
T ss_pred eCEEEeCCCCCHHHHHHHHHHHHhcC--CCeeeeEEecCCCCCchhhCCCCCCHHH
Confidence 9999999 999999999999999998 7899999999999999987653 44443
No 72
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=2.3e-20 Score=175.29 Aligned_cols=186 Identities=15% Similarity=0.242 Sum_probs=147.0
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +++..++++|+++++.+.+.|++.|.|.+.....+|... ....+.++++.+
T Consensus 142 ~~v~-i~rGC~~~CsFC~ip~~~--G--~~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~ 216 (434)
T PRK14330 142 AWVT-IIYGCNRFCTYCIVPYTR--G--REKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEA 216 (434)
T ss_pred EEEE-cccCCCCCCCCCceECcC--C--CCccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHH
Confidence 3455 579999999999876322 2 235589999999999999999999999765433333111 112344444444
Q ss_pred hhc-Cce-E--E-EeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-GME-V--C-CTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~~~-i--~-~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
.+. ++. + . ..+..++++.++.|+++| +.++.+++||. +++++.|+++.+.+++.++++.+++. |+.+.++
T Consensus 217 ~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 296 (434)
T PRK14330 217 SKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDASISSD 296 (434)
T ss_pred HhcCCceEEEEecCChhhcCHHHHHHHhcCCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 322 332 2 1 233457899999999988 78999999999 99999999999999999999999996 7789999
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
+|+|+ |||++++.++++++.+++ ++.+.++.|.|.|||++.+
T Consensus 297 ~IvGfPgET~edf~~tl~fi~~~~--~~~~~~~~~sp~pGT~~~~ 339 (434)
T PRK14330 297 IIVGFPTETEEDFMETVDLVEKAQ--FERLNLAIYSPREGTVAWK 339 (434)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCEEeeeeccCCCCChhhh
Confidence 99999 999999999999999998 8899999999999999876
No 73
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=2e-20 Score=175.81 Aligned_cols=196 Identities=14% Similarity=0.221 Sum_probs=153.0
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch-hHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~ 102 (320)
..+. .+.||+++|.||..+... + +.+..++|+|+++++.+.+.|++.+.|.|.....+|... ....+.++++.+
T Consensus 149 ~~i~-i~rGC~~~CsfC~~p~~~--g--~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l 223 (439)
T PRK14328 149 AFVT-IMYGCNNFCTYCIVPYVR--G--RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRV 223 (439)
T ss_pred EEEE-HHhCcCCCCCCCCccccc--C--CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHH
Confidence 4556 689999999999876422 2 234579999999999999999999999876544444211 012344555555
Q ss_pred hhc-C---ceE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeee
Q 020848 103 RDM-G---MEV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCSG 172 (320)
Q Consensus 103 k~~-~---~~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~ 172 (320)
.+. + +.+ ..++..++++.++.|+++| +.++.+++|+. +++++.|+++++.++++++++.+++. ++.+.++
T Consensus 224 ~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i~i~~d 303 (439)
T PRK14328 224 NEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDVAITTD 303 (439)
T ss_pred HhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 2 232 2345568999999999996 89999999999 99999999999999999999999987 6778899
Q ss_pred EEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHH
Q 020848 173 GIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMI 226 (320)
Q Consensus 173 ~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~ 226 (320)
+|+|+ |||++|+.++++++.+++ ++.+.++.|.|.|||++...+ .++.+...
T Consensus 304 ~IvG~PgET~ed~~~tl~~i~~l~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~~ 357 (439)
T PRK14328 304 IIVGFPGETEEDFEETLDLVKEVR--YDSAFTFIYSKRKGTPAAKMEDQVPEDVKH 357 (439)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcC--CCcccceEecCCCCChhhhCCCCCCHHHHH
Confidence 99999 999999999999999997 788999999999999998653 34454333
No 74
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.87 E-value=2.9e-20 Score=175.64 Aligned_cols=194 Identities=11% Similarity=0.118 Sum_probs=151.1
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--h----hHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--T----NFNQILE 97 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~----~~~~l~~ 97 (320)
..+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+.....++-. . ....+.+
T Consensus 170 a~i~-isrGCp~~CsFC~ip~~~--G--~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~ 244 (467)
T PRK14329 170 AFVS-IMRGCDNMCTFCVVPFTR--G--RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQ 244 (467)
T ss_pred EEEE-eccCcccCCCCCcccccc--C--CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHH
Confidence 3455 689999999999875321 2 34558999999999999999999999876432222210 0 1224556
Q ss_pred HHHHhhhc----CceEE-EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CC
Q 020848 98 YVKDIRDM----GMEVC-CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GI 167 (320)
Q Consensus 98 ~i~~~k~~----~~~i~-~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi 167 (320)
+++.+.+. .+... .++..++++.++.|+++ |+..+.+++||. +++++.++++.+.++..++++.+++. ++
T Consensus 245 Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~ 324 (467)
T PRK14329 245 LLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDC 324 (467)
T ss_pred HHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 66655432 23332 33455899999999987 899999999999 99999999999999999999999986 56
Q ss_pred eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC-CC-CCCHHH
Q 020848 168 NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD-QK-PVEIWE 224 (320)
Q Consensus 168 ~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~-~~-~~~~~e 224 (320)
.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||++.. .+ ..+.+.
T Consensus 325 ~i~~d~IvGfPgET~edf~~tl~~i~~l~--~~~~~v~~~sp~pGT~~~~~~~~~v~~~~ 382 (467)
T PRK14329 325 GISTDMIAGFPTETEEDHQDTLSLMEEVG--YDFAFMFKYSERPGTYAARKLEDDVPEEV 382 (467)
T ss_pred EEEEeEEEeCCCCCHHHHHHHHHHHHhhC--CCeEeeeEecCCCCChhhhhCCCCCCHHH
Confidence 7889999999 999999999999999998 7899999999999999874 33 344443
No 75
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.87 E-value=2.7e-20 Score=166.30 Aligned_cols=215 Identities=21% Similarity=0.272 Sum_probs=157.9
Q ss_pred cCCCeeEEEEEeecccCCCCC--------CCCCCCCCCCCCCCCC--CcCCCCH-HHHHHHHHHHHHcCCCEEEEecccC
Q 020848 15 SSMEEVQQCTLLSIKTGGCSE--------DCSYCPQSSRYDTGVK--GQKLMTK-DAVMQAAQKAKEAGSTRFCMGAAWR 83 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~--------~C~fC~~~~~~~~~~~--~~~~~s~-eei~~~~~~~~~~g~~~i~l~~g~~ 83 (320)
.||.+|+- .+++ ..-.||+ .|.||+...... ... .....+. ++|.+..+.....+...++|+||+
T Consensus 12 ~~g~~v~k-~~~~-~g~~cpnrdg~~~~~gC~FC~~~~~~~-~~~~~~~~~~~i~~qi~~~~~~~~~~~~~~iyf~ggt- 87 (302)
T TIGR01212 12 RYGQKVFK-ITLH-GGFSCPNRDGTKGRGGCTFCNDASRPI-FADEYTQARIPIKEQIKKQMKKYKKDKKFIAYFQAYT- 87 (302)
T ss_pred HcCCceEE-eecC-CCCCCCCCCCCCCCCCcccCCCCCCcc-ccccccccCCCHHHHHHHHHHHhhccCEEEEEEECCC-
Confidence 35888875 3555 5788999 599998764321 110 1122443 444444444433333337777764
Q ss_pred CCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHH---Hhcc-CeeccCcccc-HHHHhhhCCCCCHHH
Q 020848 84 DTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELK---KAGL-TAYNHNLDTS-REFYSKIITTRSYDE 154 (320)
Q Consensus 84 ~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~---~aGl-d~v~i~let~-~~~~~~i~~~~~~~~ 154 (320)
++.. ..+.+.++++.+++. ++.+.+++..++++.++.|+ ++|+ .++.+++||. +++++.+++++++++
T Consensus 88 ~t~l---~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~ 164 (302)
T TIGR01212 88 NTYA---PVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFAC 164 (302)
T ss_pred cCCC---CHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHH
Confidence 4433 345666666666543 23345667778887776665 5599 5799999999 999999999999999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC------CCCCHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ------KPVEIWEMIR 227 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~------~~~~~~e~~~ 227 (320)
+.++++.++++|+.+.+++|+|+ ||+.+++.++++++.+++ ++.+.+++|.|.|||++++. .+++.++++.
T Consensus 165 ~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~--~d~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~ 242 (302)
T TIGR01212 165 YVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLD--VDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYIS 242 (302)
T ss_pred HHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcC--CCEEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999 999999999999999998 89999999999999998643 5678888787
Q ss_pred HHHHHHHhCCC
Q 020848 228 MIATARIVMPK 238 (320)
Q Consensus 228 ~~a~~R~~~p~ 238 (320)
.+..+...+|.
T Consensus 243 ~~~~~l~~l~~ 253 (302)
T TIGR01212 243 LACDFLEHLPP 253 (302)
T ss_pred HHHHHHHhCCc
Confidence 77666555554
No 76
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=99.86 E-value=4.8e-20 Score=172.97 Aligned_cols=196 Identities=19% Similarity=0.230 Sum_probs=153.3
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCC------------CchhH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG------------RKTNF 92 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g------------e~~~~ 92 (320)
.+. .+.||+++|+||..+... + +++..++|+|+++++.+.+.|+++|.|.+-+...+| +|. .
T Consensus 142 ~v~-isrGCp~~CsFC~ip~~~--G--~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-~ 215 (440)
T PRK14862 142 YLK-ISEGCNHRCTFCIIPSMR--G--DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV-K 215 (440)
T ss_pred EEE-eccCCCCCCccCCccccc--C--CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccch-h
Confidence 444 799999999999876432 2 345589999999999999999999998754322222 111 4
Q ss_pred HHHHHHHHHhhhcCc--eEE-EeCCCCCHHHHHHHHHhccC--eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 020848 93 NQILEYVKDIRDMGM--EVC-CTLGMLEKHQAIELKKAGLT--AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 165 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~--~i~-~~~g~l~~e~l~~L~~aGld--~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~- 165 (320)
+++.++++.+.+.++ .+. +.+..++++.++.+++ |.- .+.+++|+. +++++.++++.++++.+++++.+++.
T Consensus 216 ~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~ 294 (440)
T PRK14862 216 TRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREIC 294 (440)
T ss_pred hHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHC
Confidence 578888888776665 322 2333367889999998 643 788899999 99999999989999999999999986
Q ss_pred -CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHHHHHH
Q 020848 166 -GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEMIRMI 229 (320)
Q Consensus 166 -Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~~~~~ 229 (320)
|+.+.+++|+|+ |||.+++.++++++++++ ++.+.++.|.|.|||+....+ .++.++..+..
T Consensus 295 ~~i~i~t~~IvGfPgET~edf~~tl~fi~e~~--~d~~~~f~ysP~pGT~a~~~~~~v~~~~~~~r~ 359 (440)
T PRK14862 295 PDLTIRSTFIVGFPGETEEDFQMLLDFLKEAQ--LDRVGCFKYSPVEGATANDLPDQVPEEVKEERW 359 (440)
T ss_pred CCceecccEEEECCCCCHHHHHHHHHHHHHcC--CCeeeeEeecCCCCCchhhCCCCCCHHHHHHHH
Confidence 777889999998 999999999999999998 789999999999999986443 45665544443
No 77
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.86 E-value=2.7e-20 Score=175.89 Aligned_cols=206 Identities=17% Similarity=0.214 Sum_probs=154.9
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.|+++-++|+.+|.||.+....... ........+.++++++.+.. .+++.|+|+||++... ..+++.+++
T Consensus 51 ~lYiHiPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l----~~~~l~~ll 125 (455)
T TIGR00538 51 SLYVHIPFCHKACYFCGCNVIITRQ-KHKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYL----SPEQISRLM 125 (455)
T ss_pred EEEEEeCCccCcCCCCCCCccCCCC-cchHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCC----CHHHHHHHH
Confidence 4567889999999999987532111 11111235677777765432 3677888887643221 345566666
Q ss_pred HHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 100 KDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 100 ~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.+++ .+.+ +.+++..++++.++.|+++|+++|++++|+. +++++.+++.++++++.++++.++++|+. +.
T Consensus 126 ~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~ 205 (455)
T TIGR00538 126 KLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSIN 205 (455)
T ss_pred HHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 66553 1334 4566778999999999999999999999999 99999999999999999999999999997 89
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC-CC----CCCCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT-PL----QDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt-~~----~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|.+.|++ +. .....++.++..+++..+...+.
T Consensus 206 ~dli~GlPgqt~e~~~~tl~~~~~l~--~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 206 IDLIYGLPKQTKESFAKTLEKVAELN--PDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred EeEEeeCCCCCHHHHHHHHHHHHhcC--CCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 899999999776643 22 22334677887888776655443
No 78
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=3.9e-20 Score=169.72 Aligned_cols=193 Identities=13% Similarity=0.269 Sum_probs=155.2
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh--HHHHHHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN--FNQILEYVK 100 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~ 100 (320)
.+.+. ...||+.+|+||..+.. ++ +.+..++++|+++++.+.+.|+++|.|.|-+...+|.+.. ...|.++++
T Consensus 145 ~A~v~-I~eGCn~~CtfCiiP~~--RG--~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~ 219 (437)
T COG0621 145 RAFVK-IQEGCNKFCTFCIIPYA--RG--KERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLR 219 (437)
T ss_pred EEEEE-hhcCcCCCCCeeeeecc--CC--CccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHH
Confidence 45666 58999999999977642 23 2344799999999999999999999998876666665433 245666666
Q ss_pred Hhhhc-Cc---eE-EEeCCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeee
Q 020848 101 DIRDM-GM---EV-CCTLGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVC 170 (320)
Q Consensus 101 ~~k~~-~~---~i-~~~~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~ 170 (320)
.+-+. |+ .+ +.++-.++++.++.+++.. +..+.+++|+. +++++.|+|+++-+++++.++.+++. ++.+.
T Consensus 220 ~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~ 299 (437)
T COG0621 220 ELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAIS 299 (437)
T ss_pred HHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCCceEe
Confidence 66543 33 33 3445568999999998852 57888999999 99999999999999999999999875 56699
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCH
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEI 222 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~ 222 (320)
+++|+|+ |||++|+.++++++++.+ ++++..+.|.|.||||.+..+ ..+.
T Consensus 300 tDiIVGFPgETeedFe~tl~lv~e~~--fd~~~~F~YSpRpGTpAa~~~~qvp~ 351 (437)
T COG0621 300 TDIIVGFPGETEEDFEETLDLVEEVR--FDRLHVFKYSPRPGTPAALMPDQVPE 351 (437)
T ss_pred ccEEEECCCCCHHHHHHHHHHHHHhC--CCEEeeeecCCCCCCccccCCCCCCH
Confidence 9999999 999999999999999998 899999999999999987543 3443
No 79
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=99.86 E-value=3e-20 Score=177.15 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=145.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG- 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~- 106 (320)
+|+||+++|.||..+... .+++..++|.++++++.+.+ .|++.|.|.+.. .+ ...+.+.++++.+.+.+
T Consensus 199 tSRGCp~~C~FC~~~~~~----~~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~-f~----~~~~~~~~l~~~l~~~~~ 269 (497)
T TIGR02026 199 FARGCPFTCNFCSQWKFW----RRYRHRDPKKFVDEIEWLVRTHGVGFFILADEE-PT----INRKKFQEFCEEIIARNP 269 (497)
T ss_pred ccCCCCCCCCCCCCCCCC----ceeecCCHHHHHHHHHHHHHHcCCCEEEEEecc-cc----cCHHHHHHHHHHHHhcCC
Confidence 799999999999876421 34666899999999998764 799999887642 22 13355667777766433
Q ss_pred --ceE--EEeCCC--CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-C
Q 020848 107 --MEV--CCTLGM--LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G 178 (320)
Q Consensus 107 --~~i--~~~~g~--l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g 178 (320)
+.. .+.... .+++.++.|+++|+.++.+++||. ++.++.++++.+.++..++++.++++|+.+..++|+|+ +
T Consensus 270 l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 270 ISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred CCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 332 222222 378999999999999999999999 99999999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
||.+++.++++++.+++ ++++.++.+.|.|||++.
T Consensus 350 et~e~~~~t~~~~~~l~--~~~~~~~~~tP~PGT~l~ 384 (497)
T TIGR02026 350 ETDETFEETYRQLLDWD--PDQANWLMYTPWPFTSLF 384 (497)
T ss_pred CCHHHHHHHHHHHHHcC--CCceEEEEecCCCCcHHH
Confidence 99999999999999998 789999999999999874
No 80
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=99.86 E-value=2.5e-20 Score=172.66 Aligned_cols=210 Identities=18% Similarity=0.237 Sum_probs=163.1
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----CCCEEEEecccCCCCCCchhHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----GSTRFCMGAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-----g~~~i~l~~g~~~~~ge~~~~~~l~~~ 98 (320)
..++++-+.|...|.||.+........ ....--.+-++++++..... .++.|+++||+ |+.-.+..++.+++.
T Consensus 35 ~slYiHiPFC~~~C~YC~fn~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGT-PslL~~~~l~~ll~~ 112 (416)
T COG0635 35 LSLYIHIPFCVSKCPYCDFNSHVTKRG-QPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGT-PSLLSPEQLERLLKA 112 (416)
T ss_pred eEEEEEcccccccCCCCCCeeeccCCC-ChHHHHHHHHHHHHHHHHhhcCCCCeEEEEEECCCc-cccCCHHHHHHHHHH
Confidence 355678999999999999976432111 00001134445555443332 26678888775 444446677777777
Q ss_pred HHHhhh-c--Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eee
Q 020848 99 VKDIRD-M--GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCS 171 (320)
Q Consensus 99 i~~~k~-~--~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~ 171 (320)
|+.... . +.+ +.++++.++.+.++.|+++|+++|++++|++ +++++.+.|.++.++..++++.+++.|+. +++
T Consensus 113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~ 192 (416)
T COG0635 113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINI 192 (416)
T ss_pred HHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 776652 2 244 5678999999999999999999999999999 99999999999999999999999999997 999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC-----CCCCHHHHHHHHHHHHHhCC
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ-----KPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~-----~~~~~~e~~~~~a~~R~~~p 237 (320)
++|+|+ ++|.+++.+.++.+.+++ |++++++.|.-.|+|++... ..++.++.+.+.......+.
T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~ 262 (416)
T COG0635 193 DLIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLE 262 (416)
T ss_pred EeecCCCCCCHHHHHHHHHHHHhCC--CCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHH
Confidence 999999 999999999999999998 89999999999999988543 24666777777776655543
No 81
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.86 E-value=8.4e-20 Score=171.78 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=152.3
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch--hHHHHHHHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVKD 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~--~~~~l~~~i~~ 101 (320)
..+. .+.||+++|+||..+... + +.+..++|+|+++++.+.+.|+++|.|.+.....+|.+. ....+.++++.
T Consensus 150 a~v~-i~rGC~~~CsFC~ip~~r--G--~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~ 224 (446)
T PRK14337 150 AFVN-IMQGCDNFCAYCIVPYTR--G--RQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHK 224 (446)
T ss_pred EEEE-eccCCCCCCcCCCcccCC--C--CCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHH
Confidence 4555 589999999999875321 2 345589999999999999999999999875433333111 01235555555
Q ss_pred hhhc-C---ceE-EEeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeee
Q 020848 102 IRDM-G---MEV-CCTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA--GINVCS 171 (320)
Q Consensus 102 ~k~~-~---~~i-~~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~ 171 (320)
+.+. + +.+ ..++..++++.++.|++. |+..+.+++|+. +++++.|+++++.+++.++++.+++. |+.+.+
T Consensus 225 l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i~i~~ 304 (446)
T PRK14337 225 VAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDIALTT 304 (446)
T ss_pred HHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 5432 3 332 234455789999999984 589999999999 99999999999999999999999997 678999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 225 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~ 225 (320)
++|+|+ |||.+|+.++++++.+++ ++.+.++.|.|.|||+.+..+ .++.+..
T Consensus 305 d~IvG~PgET~ed~~~tl~~l~~~~--~~~~~~f~ysp~pgT~a~~~~~~v~~~vk 358 (446)
T PRK14337 305 DLIVGFPGETEEDFEQTLEAMRTVG--FASSFSFCYSDRPGTRAEMLPGKVPEEVK 358 (446)
T ss_pred eEEEECCCCCHHHHHHHHHHHHhcC--CCeeEEEecCCCCCCccccCCCCCCHHHH
Confidence 999999 999999999999999998 789999999999999998765 3555443
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.86 E-value=3.8e-20 Score=174.57 Aligned_cols=206 Identities=14% Similarity=0.146 Sum_probs=151.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.|+++.+.|+.+|.||.+..... .......--.+.++++++.... .++..++|+||++... ..+++.+++
T Consensus 52 ~LYvHIPfC~~~C~yC~~~~~~~-~~~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l----~~~~l~~ll 126 (453)
T PRK13347 52 SLYLHVPFCRSLCWFCGCNTIIT-QRDAPVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTIL----NPDQFERLM 126 (453)
T ss_pred EEEEEeCCccccCCCCCCcCcCc-cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccC----CHHHHHHHH
Confidence 45667889999999999864321 1001000114556666654332 2466788887643222 235555555
Q ss_pred HHhhh-----cCce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-ee
Q 020848 100 KDIRD-----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VC 170 (320)
Q Consensus 100 ~~~k~-----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~ 170 (320)
+.+++ .+.+ +.+++..++++.++.|+++|++++++++|++ +++++.+++.++.+++.++++.+++.|+. +.
T Consensus 127 ~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~ 206 (453)
T PRK13347 127 AALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESIN 206 (453)
T ss_pred HHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEE
Confidence 55553 1334 4567778999999999999999999999999 99999999999999999999999999997 99
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC-----CCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP-----LQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~-----~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|...|+.. ......++.++.++++..+...+.
T Consensus 207 ~dli~GlPgqt~e~~~~tl~~~~~l~--p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 207 FDLIYGLPHQTVESFRETLDKVIALS--PDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred EeEEEeCCCCCHHHHHHHHHHHHhcC--CCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 8999999987555422 122345677777787776655543
No 83
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.85 E-value=6.4e-20 Score=172.77 Aligned_cols=195 Identities=16% Similarity=0.248 Sum_probs=151.9
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC------c--hhHHHH
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR------K--TNFNQI 95 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge------~--~~~~~l 95 (320)
..+. .+.||+++|.||.++... + +.+..++|+|+++++.+.+.|++.|.|.|.....+|. | .....+
T Consensus 150 a~i~-i~~GC~~~CsFC~ip~~r--G--~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l 224 (448)
T PRK14333 150 AWVN-VIYGCNERCTYCVVPSVR--G--KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTL 224 (448)
T ss_pred EEEE-hhcCCCCCCCCCceeccc--C--CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccH
Confidence 3455 589999999999876422 2 2334789999999999999999999987633222221 1 012356
Q ss_pred HHHHHHhhhc-Cce-EE---EeCCCCCHHHHHHHHHh--ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc--
Q 020848 96 LEYVKDIRDM-GME-VC---CTLGMLEKHQAIELKKA--GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA-- 165 (320)
Q Consensus 96 ~~~i~~~k~~-~~~-i~---~~~g~l~~e~l~~L~~a--Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~-- 165 (320)
.++++.+.+. ++. +. .++..++++.++.++++ |+..+.+++|+. +++++.++++++.+++.++++.+++.
T Consensus 225 ~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p 304 (448)
T PRK14333 225 TDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMP 304 (448)
T ss_pred HHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 6666666643 332 32 23445789999999986 589999999999 99999999999999999999999998
Q ss_pred CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC-CCCHHHH
Q 020848 166 GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK-PVEIWEM 225 (320)
Q Consensus 166 Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~-~~~~~e~ 225 (320)
|+.+.+++|+|+ |||++++.++++++++++ ++.+.++.|.|.|||++...+ ..+.+..
T Consensus 305 ~i~i~~d~IvGfPgET~edf~~tl~~l~~~~--~~~~~~~~~sp~pGT~~~~~~~~v~~~~~ 364 (448)
T PRK14333 305 DASISADAIVGFPGETEAQFENTLKLVEEIG--FDQLNTAAYSPRPGTPAALWDNQLSEEVK 364 (448)
T ss_pred CcEEEeeEEEECCCCCHHHHHHHHHHHHHcC--CCEEeeeeeecCCCCchhhCCCCCCHHHH
Confidence 777999999999 999999999999999998 889999999999999987653 3445443
No 84
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.85 E-value=2.2e-19 Score=166.17 Aligned_cols=174 Identities=17% Similarity=0.300 Sum_probs=144.6
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
...+. .|+.||++|.||....... .....++.+++.+.++.+.+.|+..|.|+| |||+.++++.++++.+
T Consensus 17 ~l~i~-iT~~CNl~C~~C~~~~~~~---~~~~~~~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~il~~~ 86 (378)
T PRK05301 17 WLLAE-LTYRCPLQCPYCSNPLDLA---RHGAELSTEEWIRVLREARALGALQLHFSG------GEPLLRKDLEELVAHA 86 (378)
T ss_pred EEEEE-ecCccCcCCCCCCCccccc---cccCCCCHHHHHHHHHHHHHcCCcEEEEEC------CccCCchhHHHHHHHH
Confidence 34555 6999999999997643211 123348999999999999889998998876 5788888999999999
Q ss_pred hhcCce-EEEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeeeEEEEeC
Q 020848 103 RDMGME-VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLG 178 (320)
Q Consensus 103 k~~~~~-i~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glg 178 (320)
++.++. ..+|||. ++++.++.|+++|++.|.+|+|+. ++.++.+++.. +|++++++++.+++.|+++.+.+++ ..
T Consensus 87 ~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv-~~ 165 (378)
T PRK05301 87 RELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVI-HR 165 (378)
T ss_pred HHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEe-ec
Confidence 987776 3567886 789999999999999999999999 89999987754 8999999999999999998887766 57
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
.|.+++.++++++.++| ++.+.+..+.+.
T Consensus 166 ~N~~~i~~~~~~~~~lg--v~~i~~~~~~~~ 194 (378)
T PRK05301 166 HNIDQIPRIIELAVELG--ADRLELANTQYY 194 (378)
T ss_pred CCHHHHHHHHHHHHHcC--CCEEEEeccccc
Confidence 89999999999999998 777777665553
No 85
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.85 E-value=1e-19 Score=171.68 Aligned_cols=205 Identities=14% Similarity=0.141 Sum_probs=152.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-----cCCCEEEEecccCCCCCCchhHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-----AGSTRFCMGAAWRDTIGRKTNFNQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-----~g~~~i~l~~g~~~~~ge~~~~~~l~~~i 99 (320)
.++++-+.|+.+|.||.+....... ........+.+.++++...+ .+++.+.|+||++ +.- ..+++.+++
T Consensus 51 ~LYvHIPFC~~~C~yC~~~~~~~~~-~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtP-s~l---~~~~l~~ll 125 (453)
T PRK09249 51 SLYVHIPFCRSLCYYCGCNKIITRD-HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTP-TFL---SPEQLRRLM 125 (453)
T ss_pred EEEEEeCCccccCCCCCCcccCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCccc-ccC---CHHHHHHHH
Confidence 4556789999999999986532111 11110134566666664433 3477888887643 321 245566666
Q ss_pred HHhhhc-----Cce--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCC-eee
Q 020848 100 KDIRDM-----GME--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGI-NVC 170 (320)
Q Consensus 100 ~~~k~~-----~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~ 170 (320)
+.+++. +.+ +.+++..++++.++.|+++|++++++++|+. +++++.+++.+++++++++++.+++.|+ .+.
T Consensus 126 ~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~ 205 (453)
T PRK09249 126 ALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSIN 205 (453)
T ss_pred HHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEE
Confidence 666532 334 4566778999999999999999999999999 9999999999999999999999999999 599
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC-----CCCCCCCHHHHHHHHHHHHHhC
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL-----QDQKPVEIWEMIRMIATARIVM 236 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~-----~~~~~~~~~e~~~~~a~~R~~~ 236 (320)
+++|+|+ ++|.+++.++++++.+++ +++++++.|.+.|+... .....++.++..+++..+...+
T Consensus 206 ~dli~GlPgqt~e~~~~~l~~~~~l~--~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 275 (453)
T PRK09249 206 IDLIYGLPKQTPESFARTLEKVLELR--PDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETL 275 (453)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHhcC--CCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999998 89999999986554311 1223467777777777665554
No 86
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.84 E-value=7.9e-19 Score=161.46 Aligned_cols=173 Identities=17% Similarity=0.285 Sum_probs=142.5
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
..+. .|+.||++|.||....... .....|+.|++.+.++.+.+.|+..|.|+| |||+.++++.++++.++
T Consensus 9 l~ie-iT~~CNl~C~~C~~~~~~~---~~~~~l~~e~~~~ii~~~~~~g~~~v~~~G------GEPll~~~~~~ii~~~~ 78 (358)
T TIGR02109 9 LLAE-LTHRCPLQCPYCSNPLELA---RRKAELTTEEWTDVLTQAAELGVLQLHFSG------GEPLARPDLVELVAHAR 78 (358)
T ss_pred EEEe-eccccCcCCCCCCCChhcc---cccCCCCHHHHHHHHHHHHhcCCcEEEEeC------ccccccccHHHHHHHHH
Confidence 3455 7999999999997643211 123348999999999999889998998876 56888889999999999
Q ss_pred hcCce-EEEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 104 DMGME-VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 104 ~~~~~-i~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.++. ..+|||. ++++.++.|+++|++.|.+|+|+. ++.++.+++. .+|++++++++.+++.|+.+.+.+++ ..+
T Consensus 79 ~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv-~~~ 157 (358)
T TIGR02109 79 RLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVI-HRH 157 (358)
T ss_pred HcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEe-ccC
Confidence 87876 3567886 789999999999999999999999 8999998764 47999999999999999988777766 578
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 180 AEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 180 t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.+++.++++++.++| ++.+.+....+.
T Consensus 158 N~~~l~~~~~~~~~lg--~~~i~~~~~~~~ 185 (358)
T TIGR02109 158 NIDQIPEIIELAIELG--ADRVELATTQYY 185 (358)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEEeeecc
Confidence 9999999999999998 677777654443
No 87
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.83 E-value=6.2e-19 Score=158.83 Aligned_cols=195 Identities=15% Similarity=0.220 Sum_probs=146.9
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
+...+. .|..||++|.||....... . .....+++|++++.++ +.|+..|.|.| |||+.++++.++++.
T Consensus 28 l~l~le-~T~~CNL~C~~C~~~~~~~-~-~~~~~ls~ee~~~~i~---e~g~~~V~i~G------GEPLL~pdl~eiv~~ 95 (318)
T TIGR03470 28 LVLMLE-PLFRCNLACAGCGKIQYPA-E-ILKQRLSVEECLRAVD---ECGAPVVSIPG------GEPLLHPEIDEIVRG 95 (318)
T ss_pred CEEEEe-cccccCcCCcCCCCCcCCC-c-ccccCCCHHHHHHHHH---HcCCCEEEEeC------ccccccccHHHHHHH
Confidence 344556 7999999999997653221 1 1123489999887665 46888887765 678888999999999
Q ss_pred hhhcCce-EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 102 IRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 102 ~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~-~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+++.++. ...|||.+..+.+.+|+++|.+.+.+++|+.++.+...+ +..+|++++++|+.+++.|+.+.+.+++-.+.
T Consensus 96 ~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~ 175 (318)
T TIGR03470 96 LVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVTTNTTLFNDT 175 (318)
T ss_pred HHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCC
Confidence 9877766 457899877788999999999999999999866666654 45689999999999999999988877663478
Q ss_pred CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHH
Q 020848 180 AEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIAT 231 (320)
Q Consensus 180 t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~ 231 (320)
+.+++.++++++.++| ++.+.+.+..|.+..+-.+ ..++.++..+.+..
T Consensus 176 n~~ei~~~~~~~~~lG--v~~i~i~p~~~~~~a~~~~-~~l~~~e~~~~~~~ 224 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLG--VDGMTISPGYAYEKAPDQD-HFLGRRQTKKLFRE 224 (318)
T ss_pred CHHHHHHHHHHHHHcC--CCEEEEecCcccccccccc-cccCHHHHHHHHHH
Confidence 9999999999999998 6777777666654333222 23455555554443
No 88
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.82 E-value=1.1e-18 Score=146.51 Aligned_cols=178 Identities=30% Similarity=0.504 Sum_probs=139.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--C
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--G 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~ 106 (320)
+|++|+++|.||....... . ........+++.+.+......+...+.++|| +|...+.+.++++.+++. +
T Consensus 3 ~~~~C~~~C~fC~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gg------ep~~~~~~~~~i~~~~~~~~~ 74 (204)
T cd01335 3 LTRGCNLNCGFCSNPASKG-R-GPESPPEIEEILDIVLEAKERGVEVVILTGG------EPLLYPELAELLRRLKKELPG 74 (204)
T ss_pred cCCccCCcCCCCCCCCCCC-C-CccccccHHHHHHHHHHHHhcCceEEEEeCC------cCCccHhHHHHHHHHHhhCCC
Confidence 6899999999998865322 1 1111111146666666666678878877664 454455888888888865 5
Q ss_pred ceEE-EeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhC-CCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCH
Q 020848 107 MEVC-CTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKII-TTRSYDERLETLKHVREAGINVCSGGIIGL-GEAE 181 (320)
Q Consensus 107 ~~i~-~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~-~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ 181 (320)
+.+. .+++. ++++.++.|+++|++.+.+++|+. +..++.+. +..++++++++++.+++.|+.+.+.+++|. +++.
T Consensus 75 ~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~~ 154 (204)
T cd01335 75 FEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE 154 (204)
T ss_pred ceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecCCChh
Confidence 5542 34454 589999999999999999999999 88888887 677999999999999999999999999999 4556
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+++.+.++++.+.+. +..+.+..|.|.|||++.
T Consensus 155 ~~~~~~~~~l~~~~~-~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 155 EDDLEELELLAEFRS-PDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred HHHHHHHHHHHhhcC-cchhhhhhhcccCCCeee
Confidence 889999999988752 578999999999999987
No 89
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=99.82 E-value=1.4e-18 Score=162.33 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=172.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g--~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
.|+++-+.|+.+|.||.+..... ...... .-.+.+.++++.+.+.| +..++|+||+ ++.. + +++.++++.+
T Consensus 54 ~LYvHIPFC~~~C~yC~f~~~~~-~~~~~~-~Y~~~L~~Ei~~~~~~~~~~~siy~GGGT-Ps~l-~---~~L~~ll~~i 126 (433)
T PRK08629 54 MLYAHVPFCHTLCPYCSFHRFYF-KEDKAR-AYFISLRKEMEMVKELGYDFESMYVGGGT-TTIL-E---DELAKTLELA 126 (433)
T ss_pred EEEEEeCCccCcCCCCCCcCcCC-CcchHH-HHHHHHHHHHHHHHhcCCceEEEEECCCc-cccC-H---HHHHHHHHHH
Confidence 56778899999999999975321 111111 12577888877666544 6678888764 3332 2 4455555555
Q ss_pred hhc-C---ceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHH---HHHHHHHHHcCCeeeeeEE
Q 020848 103 RDM-G---MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDER---LETLKHVREAGINVCSGGI 174 (320)
Q Consensus 103 k~~-~---~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~---l~~i~~a~~~Gi~v~~~~i 174 (320)
++. + +.+.+++..++++.++.|+++ ++++++++||+ +++++.+++.++.... ++.++.+++....+++++|
T Consensus 127 ~~~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGVQS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~~v~~DlI 205 (433)
T PRK08629 127 KKLFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLI 205 (433)
T ss_pred HHhCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEecCcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCCeEEEEEE
Confidence 532 3 335678888999999999999 99999999999 9999999998876555 5555555444345899999
Q ss_pred EEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC---CCCCCHHHHHHHHHHHHHhCCCceeecCCc----
Q 020848 175 IGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD---QKPVEIWEMIRMIATARIVMPKAMVRLSAG---- 246 (320)
Q Consensus 175 ~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~---~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g---- 246 (320)
+|+ |||.+++.+.++++.+++ +++++++++.+.|+|.... ...++.++...++..++.++. .+.+++..
T Consensus 206 ~GlPgqT~e~~~~~l~~~~~l~--p~~is~y~L~~~~~t~~~~~~~~~~p~~d~~~~~~~~~~~~l~-Gy~~~s~~~f~~ 282 (433)
T PRK08629 206 FNFPGQTDEVLQHDLDIAKRLD--PRQITTYPLMKSHQTRKSVKGSLGASQKDNERQYYQIINELFG-QYNQLSAWAFSK 282 (433)
T ss_pred ccCCCCCHHHHHHHHHHHHhCC--CCEEEEccceeccCchhhhcCCCCCcCHHHHHHHHHHHHHHHC-CCeEecccccCC
Confidence 999 999999999999999998 8999999999999997432 234566666777777777776 44443211
Q ss_pred --cc---cc-ChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcCC
Q 020848 247 --RV---RF-SMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPKA 296 (320)
Q Consensus 247 --~~---~~-~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~~ 296 (320)
.. .. ....++.++++||.+.+.|.++. ...+.++-.+.+.+ |--|+.
T Consensus 283 ~~~~~~~~y~~~~~~ylGlG~gA~s~~~~~~~~--N~~~l~~Y~~~i~~-g~~pv~ 335 (433)
T PRK08629 283 KNDEGFDEYVIDYDEYLGVGSGSFSFLDGTLYV--NTFSLRDYQERIAA-GQMGVI 335 (433)
T ss_pred CCchhhceeeccCCeEEEEcCCeeEecCCeEEE--cCCCHHHHHHHHHc-CCCCee
Confidence 00 00 01123456777777665443222 22334444444433 433433
No 90
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.81 E-value=7.4e-18 Score=157.42 Aligned_cols=205 Identities=16% Similarity=0.229 Sum_probs=155.5
Q ss_pred EeecccCCCCCCCCCCCCCCC-CCCCC--CCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhH-HHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSR-YDTGV--KGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF-NQILEY 98 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~-~~~~~--~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~-~~l~~~ 98 (320)
.+. +|++||++|.||..... .+... .....++++|+++.++.+... ++..+.|.|. |||+.. +.+++.
T Consensus 27 ~~~-vt~~CNl~C~yC~~~~~~~~esrpg~~~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~-----GEPLl~~e~~~~~ 100 (442)
T TIGR01290 27 HLA-VAPACNIQCNYCNRKYDCANESRPGVVSELLTPEQALRKARQVAAEIPQLSVVGIAGP-----GDPLANIGKTFQT 100 (442)
T ss_pred EEe-cCCCCCCcCcCCCCCCCCCcCCCCccccccCCHHHHHHHHHHHHHhcCCCCEEEEecC-----CCcccCccccHHH
Confidence 455 79999999999975321 01011 123459999999999887654 4667777652 567554 557888
Q ss_pred HHHhhhc--CceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC----------CC-----CHHHHHHHH
Q 020848 99 VKDIRDM--GMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----------TR-----SYDERLETL 159 (320)
Q Consensus 99 i~~~k~~--~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~----------~~-----~~~~~l~~i 159 (320)
++.+++. ++.+ ..|||.+..+.+++|.++|+|.|.+++++. ++.++.+.+ +. .+++.++++
T Consensus 101 l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l 180 (442)
T TIGR01290 101 LELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGL 180 (442)
T ss_pred HHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHH
Confidence 8888854 6774 567998889999999999999999999999 899887631 12 267778999
Q ss_pred HHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC--CCCCC--CCCCCCHHHHHHHHHHHHHh
Q 020848 160 KHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK--GTPLQ--DQKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 160 ~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~--gt~~~--~~~~~~~~e~~~~~a~~R~~ 235 (320)
+.+.+.|+.+.+..++-.|.|++++.++++++++++ +..+.+.+|+|.| |+++. ..++++.+++.++...++..
T Consensus 181 ~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~lg--~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~ 258 (442)
T TIGR01290 181 EKLTERGILVKVNSVLIPGINDEHLVEVSKQVKELG--AFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMG 258 (442)
T ss_pred HHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHhCC--CcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhh
Confidence 999999999888877755888899999999999998 6678899999888 87764 34678888877776665544
Q ss_pred CC
Q 020848 236 MP 237 (320)
Q Consensus 236 ~p 237 (320)
+|
T Consensus 259 ~~ 260 (442)
T TIGR01290 259 TP 260 (442)
T ss_pred hh
Confidence 43
No 91
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.81 E-value=6.8e-18 Score=146.27 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=144.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC---CCEEEEecccCCCCCCchhHHH-HHHHHHHhh
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG---STRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIR 103 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g---~~~i~l~~g~~~~~ge~~~~~~-l~~~i~~~k 103 (320)
+.+.+||++|.||....... ......++++++++.+..+.... ...|.|+| |||+..++ +.++++.++
T Consensus 20 v~~~gCnl~C~~C~~~~~~~--~~~~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~G------GEPll~~~~~~~li~~~~ 91 (235)
T TIGR02493 20 VFMQGCPLRCQYCHNPDTWD--LKGGTEVTPEELIKEVGSYKDFFKASGGGVTFSG------GEPLLQPEFLSELFKACK 91 (235)
T ss_pred EEECCCCCcCCCCCChhhcc--CCCCEECCHHHHHHHHHHhHHHHhcCCCeEEEeC------cccccCHHHHHHHHHHHH
Confidence 36889999999997643211 11224489999999888765532 24677765 56777666 458999998
Q ss_pred hcCce-EEEeCCCCC--HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--
Q 020848 104 DMGME-VCCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-- 177 (320)
Q Consensus 104 ~~~~~-i~~~~g~l~--~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-- 177 (320)
+.++. ...|||.+. .+.+.++.+ .+|.+.+++++. ++.|..+++. ++++++++++.+++.|+++.+.+++..
T Consensus 92 ~~g~~~~i~TNG~~~~~~~~~~~ll~-~~d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~~~~v~~vv~~~~ 169 (235)
T TIGR02493 92 ELGIHTCLDTSGFLGGCTEAADELLE-YTDLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNKPIWIRYVLVPGY 169 (235)
T ss_pred HCCCCEEEEcCCCCCccHHHHHHHHH-hCCEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCCcEEEEEeeeCCc
Confidence 87876 356888643 567777766 478899999999 8999887654 899999999999999998776666644
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC---------CCCCCCCCCCCHHHHHHHHHHHH
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---------GTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~---------gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
.++.+++.++++++.+++. ...+.+.+|.|.+ ..++.+.++++.+++.+..++++
T Consensus 170 ~~n~~ei~~l~~~~~~l~~-~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (235)
T TIGR02493 170 TDSEEDIEALAEFVKTLPN-VERVEVLPYHQLGVYKWEALGIEYPLEGVKPPNKEQLERAAEIFK 233 (235)
T ss_pred CCCHHHHHHHHHHHHhCCC-CceEEecCCCcccHHHHHHcCCcCccCCCCCCCHHHHHHHHHHHh
Confidence 4688999999999999973 4677778887753 23445667788888777776665
No 92
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.80 E-value=1.7e-17 Score=156.78 Aligned_cols=217 Identities=17% Similarity=0.287 Sum_probs=165.6
Q ss_pred eeEEEEEeecccCCCCC-CCCCCCCCC------CCCCCC-------CCcCCCCHHHHHHHHHHHHHcC--CCEE--EEec
Q 020848 19 EVQQCTLLSIKTGGCSE-DCSYCPQSS------RYDTGV-------KGQKLMTKDAVMQAAQKAKEAG--STRF--CMGA 80 (320)
Q Consensus 19 ~v~~~~~l~~~t~~C~~-~C~fC~~~~------~~~~~~-------~~~~~~s~eei~~~~~~~~~~g--~~~i--~l~~ 80 (320)
+|.+.+.+. .-..||+ +|.||+-.. .+..+. .++..-+.+++...++.+...| ++.+ .|.|
T Consensus 65 gv~~v~vm~-~p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~G 143 (522)
T TIGR01211 65 GVAVVAVMT-SPHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKVELIIMG 143 (522)
T ss_pred CeEEEEEec-CCccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceEEEEEEC
Confidence 344445555 4577995 799996521 111111 1344468899999999998876 4444 5566
Q ss_pred ccCCCCCCchhHHHHHHHHHHhh-h-------------------------cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 81 AWRDTIGRKTNFNQILEYVKDIR-D-------------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 81 g~~~~~ge~~~~~~l~~~i~~~k-~-------------------------~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
|+ .+.-.....+.+++.+.... . .++.+.+++..++++.++.|+++|+++|.+
T Consensus 144 GT-ft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~~L~~~G~~rVsl 222 (522)
T TIGR01211 144 GT-FPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKLGATRVEL 222 (522)
T ss_pred CC-cccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 54 33322334455555444332 1 123355777889999999999999999999
Q ss_pred Ccccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhc---CCCCCCeeeeeeeeec
Q 020848 135 NLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLAT---LPTHPESVPINALLAV 209 (320)
Q Consensus 135 ~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~---l~~~~~~v~~~~~~p~ 209 (320)
++||+ +++++.++++++.+++.++++.++++|+++++++|+|+ |++.++..++++.+.+ ++ ++.+.++++.+.
T Consensus 223 GVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgqt~e~~~~t~~~l~~~~~l~--pD~Ikiypl~V~ 300 (522)
T TIGR01211 223 GVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLEMFREIFEDPRFK--PDMLKIYPTLVT 300 (522)
T ss_pred ECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCCCCHHHHHHHHHHHHhccCCC--cCEEEEecceee
Confidence 99999 99999999999999999999999999999999999999 9999999999998874 76 899999999999
Q ss_pred CCCCCCC------CCCCCHHHHHHHHHHHHHhCCCc
Q 020848 210 KGTPLQD------QKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 210 ~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
+||++.. ..+++.++.+.+++.+...+|..
T Consensus 301 ~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~~ 336 (522)
T TIGR01211 301 RGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPKW 336 (522)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 9999853 46788999999999888888853
No 93
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=99.80 E-value=5e-18 Score=142.94 Aligned_cols=197 Identities=22% Similarity=0.342 Sum_probs=156.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--- 105 (320)
.+..|-.+|.||.... +. ...++++|-.+.++....+|.+.++|++-.++... +.....+.+.|+++|+.
T Consensus 76 mG~~CTR~C~FC~V~~----g~--P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-DGGA~hfa~~i~~Ire~~P~ 148 (306)
T COG0320 76 LGDICTRRCRFCDVKT----GR--PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-DGGAQHFAECIRAIRELNPQ 148 (306)
T ss_pred ccchhccCCCccccCC----CC--CCCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-ccchHHHHHHHHHHHhhCCC
Confidence 5889999999998864 22 22278899999999999999999999887766543 23445677777777754
Q ss_pred -CceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcC--CeeeeeEEEEeCCCHH
Q 020848 106 -GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAG--INVCSGGIIGLGEAEE 182 (320)
Q Consensus 106 -~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~G--i~v~~~~i~Glget~e 182 (320)
.+++++..-.-.++.++.+.++|.|.+++++||.+++|..++++.+|++-++.++.+++.+ +.+.+++|+|+||+.+
T Consensus 149 t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~ 228 (306)
T COG0320 149 TTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDE 228 (306)
T ss_pred ceEEEeCccccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHH
Confidence 4556554333478999999999999999999999999999999999999999999999988 7799999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 183 DRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 183 d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++.+.++.+++.+ ++.+.+..|.--.-..+.-....+++|+..+-..+..
T Consensus 229 Ev~e~m~DLr~~g--vdilTiGQYlqPS~~HlpV~ryv~PeeF~~~~~~a~~ 278 (306)
T COG0320 229 EVIEVMDDLRSAG--VDILTIGQYLQPSRKHLPVQRYVTPEEFDELEEVAEE 278 (306)
T ss_pred HHHHHHHHHHHcC--CCEEEeccccCCccccCCceeccCHHHHHHHHHHHHH
Confidence 9999999999998 7888887765322222222345778887666665543
No 94
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=142.81 Aligned_cols=198 Identities=17% Similarity=0.235 Sum_probs=150.8
Q ss_pred ccCCCCCCCCCCCCCCCCCC--CCCCcCCCCHHHHHHHHHHHHHcCCC--EEEEecccCCCCCCchhHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDT--GVKGQKLMTKDAVMQAAQKAKEAGST--RFCMGAAWRDTIGRKTNFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~--~~~~~~~~s~eei~~~~~~~~~~g~~--~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~ 104 (320)
.+.+||++|.||+......+ ....|. .++|.+++..+...+..-+ +.+|-| .|||..++.+.++++++++
T Consensus 113 p~tgCnlnCIfCSVdeGp~SrtR~~dy~-Vd~eyLl~w~~kVa~~KgkglEaHlDG-----qGEP~lYP~l~~lVqalk~ 186 (414)
T COG2100 113 PSTGCNLNCIFCSVDEGPYSRTRKLDYV-VDPEYLLEWFEKVARFKGKGLEAHLDG-----QGEPLLYPHLVDLVQALKE 186 (414)
T ss_pred CCccccceeEEEeccCCcccceeccceE-ecHHHHHHHHHHHHhhhCCCeEEEecC-----CCCCccchhHHHHHHHHhc
Confidence 68899999999987543211 111233 6889999998877664222 444533 3789999999999999996
Q ss_pred c-Cce--EEEeCC-CCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 105 M-GME--VCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 105 ~-~~~--i~~~~g-~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
. +++ .+.||| +|+++.+++|.+||+|++++|+++. |+.-+.+.+. .+.+.+++..+.+.+.|+++-+.-++-.
T Consensus 187 ~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lP 266 (414)
T COG2100 187 HKGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLP 266 (414)
T ss_pred CCCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEEEeeeecC
Confidence 5 555 234555 5999999999999999999999999 7777777763 4778999999999999999777766646
Q ss_pred CCCHHHHHHHHHHHhcCCCC--CCeeeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHH
Q 020848 178 GEAEEDRVGLLHTLATLPTH--PESVPINALLAVK-GTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~--~~~v~~~~~~p~~-gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
|-|++|+..+++|++++|.+ -..+.++.|+|.. |-.-....+.+..++++++...
T Consensus 267 G~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrel 324 (414)
T COG2100 267 GVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLREL 324 (414)
T ss_pred CcChHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHH
Confidence 89999999999999999753 3467899999976 4322223567788888887654
No 95
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.78 E-value=3.4e-18 Score=139.22 Aligned_cols=155 Identities=25% Similarity=0.448 Sum_probs=119.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH-HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~-~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-- 105 (320)
+|++|+++|.||...... .......++++++++.++.+ ...|...+.++| |+|..++++.+.+..+.+.
T Consensus 3 ~~~~C~~~C~fC~~~~~~--~~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~------gep~~~~~~~~~~~~~~~~~~ 74 (166)
T PF04055_consen 3 TTRGCNLNCSFCYYPRSR--RKNKPREMSPEEILEEIKELKQDKGVKEIFFGG------GEPTLHPDFIELLELLRKIKK 74 (166)
T ss_dssp EESEESS--TTTSTTTTC--CTCGCEECHHHHHHHHHHHHHHHTTHEEEEEES------STGGGSCHHHHHHHHHHHCTC
T ss_pred ECcCcCccCCCCCCCccC--CCcccccCCHHHHHHHHHHHhHhcCCcEEEEee------cCCCcchhHHHHHHHHHHhhc
Confidence 689999999999887531 11233448999999999999 577866666665 4566666777777766643
Q ss_pred -CceE-EEeCCC-CCHHHHHHHHHhccCeeccCcccc-HH-HHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CC
Q 020848 106 -GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-RE-FYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GE 179 (320)
Q Consensus 106 -~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~-~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-ge 179 (320)
++.+ ..++|. .+++.++.|+++|++.+.+++++. ++ ..+.++++.++++++++++.++++|+.....+++|+ ++
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~ 154 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIPRVIIFIVGLPGE 154 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSETEEEEEEEBTTT
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC
Confidence 5664 345565 459999999999999999999999 88 788887788999999999999999998445555556 99
Q ss_pred CHHHHHHHHHHH
Q 020848 180 AEEDRVGLLHTL 191 (320)
Q Consensus 180 t~ed~~~~l~~l 191 (320)
+++|+.++++++
T Consensus 155 ~~~e~~~~~~~i 166 (166)
T PF04055_consen 155 NDEEIEETIRFI 166 (166)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHhCcC
Confidence 999999999875
No 96
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=99.77 E-value=1.9e-16 Score=142.11 Aligned_cols=188 Identities=16% Similarity=0.179 Sum_probs=137.2
Q ss_pred cCCCeeEEEEEeecccCCCCC----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCC----EEE-Eeccc--
Q 020848 15 SSMEEVQQCTLLSIKTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GST----RFC-MGAAW-- 82 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~----~i~-l~~g~-- 82 (320)
+.|.......++. .|.||++ +|.||++.... ++..++|++.+.++.+.+. +.+ .+. +.+|.
T Consensus 8 ~~~~~~~~~~~i~-~srGC~~~~~g~C~FC~~~~~~------~r~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~ 80 (313)
T TIGR01210 8 LRGFPGKSLTIIL-RTRGCYWAREGGCYMCGYLADS------SPEVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFL 80 (313)
T ss_pred cCCcccceEEEEE-eCCCCCCCCCCcCccCCCCCCC------CCCCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcC
Confidence 3343333334454 7999999 59999765321 1226889999999876653 322 111 33321
Q ss_pred CCCCCCchhHHHHHHHHHHhhhcC----ceEEEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHh-hhCCCCCHHHH
Q 020848 83 RDTIGRKTNFNQILEYVKDIRDMG----MEVCCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYS-KIITTRSYDER 155 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k~~~----~~i~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~-~i~~~~~~~~~ 155 (320)
.+.. ...+.+.++++.+++.+ +.+.+++..++++.++.|+++|++ +|.+++||. +++++ .++++++.+++
T Consensus 81 D~~~---~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~ 157 (313)
T TIGR01210 81 DDRE---VPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDF 157 (313)
T ss_pred CcCc---CCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHH
Confidence 1111 12344555555555433 335567778999999999999998 899999999 99995 79999999999
Q ss_pred HHHHHHHHHcCCeeeeeEEEEe-C----CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 156 LETLKHVREAGINVCSGGIIGL-G----EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 156 l~~i~~a~~~Gi~v~~~~i~Gl-g----et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
.++++.++++|+.+..++|+|+ + |+.+++.++++++..++ ++++++++.|.|||+++
T Consensus 158 ~~ai~~~~~~Gi~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~---~~vs~~~l~v~~gT~l~ 219 (313)
T TIGR01210 158 IRAAELARKYGAGVKAYLLFKPPFLSEKEAIADMISSIRKCIPVT---DTVSINPTNVQKGTLVE 219 (313)
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCCChhhhHHHHHHHHHHHHhcC---CcEEEECCEEeCCCHHH
Confidence 9999999999999999999998 4 45567777888888884 79999999999999874
No 97
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.76 E-value=1.1e-16 Score=139.63 Aligned_cols=195 Identities=14% Similarity=0.174 Sum_probs=143.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHH-HHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQ-ILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~-l~~~i~~~k~ 104 (320)
++.+||++|.||..+... .......++++|+++.+...... ....|.++| |||+...+ +.++++.+++
T Consensus 26 f~~gCnl~C~~C~~~~~~--~~~~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~~~~l~~~~k~ 97 (246)
T PRK11145 26 FFQGCLMRCLYCHNRDTW--DTHGGKEVTVEELMKEVVTYRHFMNASGGGVTASG------GEAILQAEFVRDWFRACKK 97 (246)
T ss_pred EECCCCCcCCCCCCHHHC--CCCCCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeC------ccHhcCHHHHHHHHHHHHH
Confidence 688999999999864321 11123348999999988765432 234677765 57876666 4599999998
Q ss_pred cCceE-EEeCCCCC--HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C
Q 020848 105 MGMEV-CCTLGMLE--KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G 178 (320)
Q Consensus 105 ~~~~i-~~~~g~l~--~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g 178 (320)
.|+.+ ..|||.+. .+.++.+.+. +|.+.+++++. ++.++.+++ .+.+..+++++.+.+.|+++.+.+++.. .
T Consensus 98 ~g~~i~l~TNG~~~~~~~~~~~ll~~-~d~v~islk~~~~e~~~~~~g-~~~~~~l~~i~~l~~~g~~v~i~~~li~g~n 175 (246)
T PRK11145 98 EGIHTCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLVG-VSNHRTLEFARYLAKRNQKTWIRYVVVPGWT 175 (246)
T ss_pred cCCCEEEECCCCCCcchHHHHHHHHh-CCEEEECCCcCChhhcccccC-CChHHHHHHHHHHHhCCCcEEEEEEEECCCC
Confidence 88874 56789863 5778887664 89999999999 888988865 3567889999999999988666665544 5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC---------CCCCCCCCCHHHHHHHHHHHHH
Q 020848 179 EAEEDRVGLLHTLATLPTHPESVPINALLAVKGT---------PLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 179 et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt---------~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
++++++.++++++++++ .+..+.+.+|.|.++. ++.+.++++.+++.+....++.
T Consensus 176 d~~~ei~~l~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~ 239 (246)
T PRK11145 176 DDDDSAHRLGEFIKDMG-NIEKIELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERVKGILEQ 239 (246)
T ss_pred CCHHHHHHHHHHHHhcC-CcceEEEecCCccchhHHHHcCCcccccCCCCCCHHHHHHHHHHHHH
Confidence 67779999999999886 2567888888887643 3345567888887776666654
No 98
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.76 E-value=1.6e-16 Score=142.81 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=152.3
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCC--CCCcCCCCHHHHHHHHHHHHH---c---C--------------CCEEEEe
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTG--VKGQKLMTKDAVMQAAQKAKE---A---G--------------STRFCMG 79 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~--~~~~~~~s~eei~~~~~~~~~---~---g--------------~~~i~l~ 79 (320)
-|..+.....+|+++|.||........+ .......++|+|++.+..... . | .+.+.|+
T Consensus 57 ~c~q~~P~~~~C~~rC~fC~r~~~~~~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iS 136 (322)
T PRK13762 57 RCVQMTPVVAWCNQRCLFCWRPLEEDVGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAIS 136 (322)
T ss_pred heeccCchhHHHhccCceeeccCCCCcccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEe
Confidence 3555554445599999999654322111 122345789999999865421 1 2 2346665
Q ss_pred cccCCCCCCchhHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHH
Q 020848 80 AAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDE 154 (320)
Q Consensus 80 ~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~ 154 (320)
++ |||+.+++|.++++.+++.|+.+ ..|||.+ ++.++.| +.++|.+.+++++. ++.|+.++++ .+|+.
T Consensus 137 l~-----GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~ 209 (322)
T PRK13762 137 LS-----GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWER 209 (322)
T ss_pred CC-----ccccchhhHHHHHHHHHHcCCCEEEECCCCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHH
Confidence 42 78988999999999999888874 5789976 6788888 77899999999999 8999999763 58999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC--CCCCCCCHHHHHHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL--QDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~--~~~~~~~~~e~~~~~a~~ 232 (320)
++++++.+.+.|.++.+.+++-.|.|..+..++++++++++ ++.+.+.+|+|.+.... .....++.+++..+...+
T Consensus 210 vl~~L~~l~~~~~~~~ir~tlv~g~Nd~e~~~~a~l~~~~~--~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~~l 287 (322)
T PRK13762 210 ILETLELLPSKKTRTVIRITLVKGYNMHDPEGFAKLIERAN--PDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAKEL 287 (322)
T ss_pred HHHHHHHHHhCCCCEEEEEEEECCcCccHHHHHHHHHHHcC--CCEEEEECCeECCCccccccccCCcCHHHHHHHHHHH
Confidence 99999999999888666655534666667678999999987 78999999999875432 233457888888877766
Q ss_pred HHhC
Q 020848 233 RIVM 236 (320)
Q Consensus 233 R~~~ 236 (320)
+...
T Consensus 288 ~~~~ 291 (322)
T PRK13762 288 AEYT 291 (322)
T ss_pred HHhc
Confidence 6554
No 99
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.72 E-value=1.3e-15 Score=128.82 Aligned_cols=220 Identities=19% Similarity=0.315 Sum_probs=158.4
Q ss_pred cCCCeeEEEEEeecccCCCCCC--------CCCCCCCCCCCCCCCCcCCCCH-HHHHHHHHHHHHc-C-CC-EEEEeccc
Q 020848 15 SSMEEVQQCTLLSIKTGGCSED--------CSYCPQSSRYDTGVKGQKLMTK-DAVMQAAQKAKEA-G-ST-RFCMGAAW 82 (320)
Q Consensus 15 ~~~~~v~~~~~l~~~t~~C~~~--------C~fC~~~~~~~~~~~~~~~~s~-eei~~~~~~~~~~-g-~~-~i~l~~g~ 82 (320)
.||.+|+-. .+. -+=.||++ |.||+-..+.... ..+.++. +++.+.+..+.+. + .+ -++|+..
T Consensus 18 ~fg~Kv~Kv-~ld-~GF~CPNRDGti~rGGCtFC~~~g~~d~~--~~~~~~i~~Q~~~q~~~~~kK~~~~kyiaYFQ~~- 92 (312)
T COG1242 18 KFGEKVFKV-TLD-GGFSCPNRDGTIGRGGCTFCSVAGSGDFA--GQPKISIAEQFKEQAERMHKKWKRGKYIAYFQAY- 92 (312)
T ss_pred HhCCeeEEE-ecc-CCCCCCCCCCcccCCceeeecCCCCCccc--cCcccCHHHHHHHHHHHHHHhhcCCcEEEEEecc-
Confidence 368888753 333 46679985 9999766432211 1222454 4555555544432 2 22 2345654
Q ss_pred CCCCCCchhHHHHHHHHHHhh-hc---CceEEEeCCCCCHHHHHHHHHhcc---CeeccCcccc-HHHHhhhCCCCCHHH
Q 020848 83 RDTIGRKTNFNQILEYVKDIR-DM---GMEVCCTLGMLEKHQAIELKKAGL---TAYNHNLDTS-REFYSKIITTRSYDE 154 (320)
Q Consensus 83 ~~~~ge~~~~~~l~~~i~~~k-~~---~~~i~~~~g~l~~e~l~~L~~aGl---d~v~i~let~-~~~~~~i~~~~~~~~ 154 (320)
+.|+. ..+-|-+..+.+- .. |+.+-+.+..+.++.++.|.+.-= -++.+++||. +++.+.++|+|++..
T Consensus 93 TNTyA---pvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 93 TNTYA---PVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred ccccC---cHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEEeccchhhHHHHHHHhcccchHH
Confidence 34444 2344444444433 22 555667788899999999887732 2456799999 999999999999999
Q ss_pred HHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC------CCCCCCHHHHHH
Q 020848 155 RLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ------DQKPVEIWEMIR 227 (320)
Q Consensus 155 ~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~------~~~~~~~~e~~~ 227 (320)
+.++++.+++.||++++++|+|+ ||+.++..++++.+..++ ++-|.++++...+||+|+ .....+.+|+..
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~--v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv~ 247 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELG--VDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVE 247 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcC--CceEEEEEEEEecCChHHHHHHcCCceeccHHHHHH
Confidence 99999999999999999999999 999999999999999998 889999999999999985 356789999999
Q ss_pred HHHHHHHhCC-Ccee-ecC
Q 020848 228 MIATARIVMP-KAMV-RLS 244 (320)
Q Consensus 228 ~~a~~R~~~p-~~~i-~~~ 244 (320)
.+..+-..+| +..| |++
T Consensus 248 ~~~d~le~lpp~vviHRit 266 (312)
T COG1242 248 LVCDQLEHLPPEVVIHRIT 266 (312)
T ss_pred HHHHHHHhCCcceEEEEec
Confidence 8876644554 4444 454
No 100
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.70 E-value=3.8e-15 Score=124.95 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=118.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 108 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~ 108 (320)
.|++||++|.||..+... .......++++++.+.++... ..++.+.|+| |||+..+++.++++.+++.|+.
T Consensus 22 ~t~~Cnl~C~~C~~~~~~--~~~~~~~~~~~~i~~~i~~~~-~~~~~i~~sG------GEPll~~~l~~li~~~~~~g~~ 92 (191)
T TIGR02495 22 FFQGCNLKCPYCHNPELI--DREGSGEIEVEFLLEFLRSRQ-GLIDGVVITG------GEPTLQAGLPDFLRKVRELGFE 92 (191)
T ss_pred EcCCCCCCCCCCCCcccc--CCCCCCcCCHHHHHHHHHHhc-CCCCeEEEEC------CcccCcHhHHHHHHHHHHCCCe
Confidence 699999999999875321 112234489999999987642 2367787775 5677777799999999987877
Q ss_pred E-EEeCCCCCHHHHHHHHHhc-cCeeccCccccHHHHhhhCC-CCCHH-HHHHHHHHHHHcCCeeeeeEEEEeC-CCHHH
Q 020848 109 V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTSREFYSKIIT-TRSYD-ERLETLKHVREAGINVCSGGIIGLG-EAEED 183 (320)
Q Consensus 109 i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~~~~~~~i~~-~~~~~-~~l~~i~~a~~~Gi~v~~~~i~Glg-et~ed 183 (320)
+ ..|||. .++.++++.++| ++.+.+++++.++.+..+.+ ..+++ +++++++.+++.|+.+.+.+++-.+ -..++
T Consensus 93 v~i~TNg~-~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~e 171 (191)
T TIGR02495 93 VKLDTNGS-NPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEED 171 (191)
T ss_pred EEEEeCCC-CHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHH
Confidence 4 456786 578899999999 69999999988666666644 45665 8999999999999987777666442 23668
Q ss_pred HHHHHHHHhcCC
Q 020848 184 RVGLLHTLATLP 195 (320)
Q Consensus 184 ~~~~l~~l~~l~ 195 (320)
+.++++++.+++
T Consensus 172 i~~~~~~l~~~~ 183 (191)
T TIGR02495 172 LAEIATRIKENG 183 (191)
T ss_pred HHHHHHHhccCC
Confidence 999999998875
No 101
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.69 E-value=4.7e-15 Score=133.70 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=142.2
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchh--HHHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTN--FNQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~--~~~l~~~i~~ 101 (320)
++. .|++||.+|.||...... +......++.+++.+.++.+.+. ++..|.|+|| +|+. .+++.++++.
T Consensus 91 ll~-vT~~C~~~Cr~C~r~~~~--~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGG------DPl~~~~~~L~~ll~~ 161 (321)
T TIGR03822 91 LLK-PVHVCPVYCRFCFRREMV--GPEGLGVLSPAELDAAFAYIADHPEIWEVILTGG------DPLVLSPRRLGDIMAR 161 (321)
T ss_pred EEE-ecCCCCCcCcCCCchhhc--CCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCC------CcccCCHHHHHHHHHH
Confidence 344 699999999999765321 11122336889999988888754 8999988875 3543 3678888888
Q ss_pred hhhcC-c---eEEE-----eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 102 IRDMG-M---EVCC-----TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 102 ~k~~~-~---~i~~-----~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
+++.+ + .+.+ ++..++++.++.|+++|. .+.+++++. ++.. .++.+++++.++++|+.+..
T Consensus 162 l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~-~v~i~l~~~h~~el--------~~~~~~ai~~L~~~Gi~v~~ 232 (321)
T TIGR03822 162 LAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK-TVYVALHANHAREL--------TAEARAACARLIDAGIPMVS 232 (321)
T ss_pred HHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC-cEEEEecCCChhhc--------CHHHHHHHHHHHHcCCEEEE
Confidence 87653 2 2222 233479999999999995 477888886 4321 37889999999999999766
Q ss_pred eEEE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 172 GGII--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 172 ~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
..++ |.+++.+++.++++++.+++ +....++.+.|.+|+... ..+.++..+++..++..++.
T Consensus 233 q~vLl~gvNd~~~~l~~l~~~l~~~g--v~pyyl~~~~p~~g~~~f---~~~~~~~~~i~~~l~~~~~g 296 (321)
T TIGR03822 233 QSVLLRGVNDDPETLAALMRAFVECR--IKPYYLHHLDLAPGTAHF---RVTIEEGQALVRALRGRISG 296 (321)
T ss_pred EeeEeCCCCCCHHHHHHHHHHHHhcC--CeeEEEEecCCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 5544 66899999999999999998 777889999999997544 36778888888877777665
No 102
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.69 E-value=1.1e-14 Score=132.58 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=144.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH--------HHcCCCEEEEecccCCCCCCchhH-HHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKA--------KEAGSTRFCMGAAWRDTIGRKTNF-NQILEYV 99 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~--------~~~g~~~i~l~~g~~~~~ge~~~~-~~l~~~i 99 (320)
++.+||++|.||..... +. .+.++.+||++.+..+ ...+++.|+|.| .|||+.. +.+.+++
T Consensus 127 sq~GCnl~C~FC~tg~~---g~--~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmG-----mGEPLln~d~v~~~i 196 (368)
T PRK14456 127 SQAGCALRCSFCATGQM---GF--RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMG-----MGEPLLNTDNVFEAV 196 (368)
T ss_pred ecCCCCCCCCCCCCCCC---CC--CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeC-----cCccccCHHHHHHHH
Confidence 68999999999976531 22 2348899999887433 134688888876 2578665 4699999
Q ss_pred HHhhhc----Cc---eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC----CCCHHHHHHHHHH-HHH
Q 020848 100 KDIRDM----GM---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT----TRSYDERLETLKH-VRE 164 (320)
Q Consensus 100 ~~~k~~----~~---~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~----~~~~~~~l~~i~~-a~~ 164 (320)
+.+++. ++ .+ ..|+|+ . +.+++|.++|++ .+.+|+++. ++.++++.+ ..++++++++++. +.+
T Consensus 197 ~~l~~~~~~~~is~r~ItisT~Gl-~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~ 274 (368)
T PRK14456 197 LTLSTRKYRFSISQRKITISTVGI-T-PEIDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASK 274 (368)
T ss_pred HHHhccccccCcCcCeeEEECCCC-h-HHHHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHh
Confidence 998853 22 23 345673 3 458999999997 899999999 999999863 4489999999985 666
Q ss_pred cCCeeee--eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 165 AGINVCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 165 ~Gi~v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.|.++.+ -++-|.+++.+|+.+++++++.+. ..|.+.+|.|+++.++. +++.+.+.+....++..--...++
T Consensus 275 ~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~---~~VnlIpyn~~~~~~~~---~ps~e~i~~F~~~L~~~Gi~vtvR 348 (368)
T PRK14456 275 TGEPVTLVYMLLEGINDSPEDARKLIRFASRFF---CKINLIDYNSIVNIKFE---PVCSSTRERFRDRLLDAGLQVTVR 348 (368)
T ss_pred cCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCC---CeeEEeeeccCCCCCCC---CCCHHHHHHHHHHHHHCCCcEEee
Confidence 7766555 445566789999999999999884 47889999998888764 466777666666565443334444
Q ss_pred cC
Q 020848 243 LS 244 (320)
Q Consensus 243 ~~ 244 (320)
-+
T Consensus 349 ~~ 350 (368)
T PRK14456 349 KS 350 (368)
T ss_pred CC
Confidence 33
No 103
>PRK00955 hypothetical protein; Provisional
Probab=99.67 E-value=6.3e-15 Score=140.58 Aligned_cols=188 Identities=14% Similarity=0.213 Sum_probs=133.7
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEE-ecc-cCCCCCC----------
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCM-GAA-WRDTIGR---------- 88 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l-~~g-~~~~~ge---------- 88 (320)
+...|. .+.||+..|+||..+... + ......+.|+|+++++.+.+. |++.+.. .|| +...+|-
T Consensus 292 i~~sI~-i~RGC~g~CSFCaIp~~r--G-r~~rSRs~esIv~Evk~L~~~~gfkg~I~DlgGptan~Yg~~c~~~~~~~~ 367 (620)
T PRK00955 292 VKFSIT-SHRGCFGGCSFCAITFHQ--G-RFIQSRSQESILREAKELTEMPDFKGYIHDVGGPTANFRKMACKKQLKCGA 367 (620)
T ss_pred EEEEEE-eeCCCCCCCCCCCeeccc--C-CcceecCHHHHHHHHHHHHhccCCeEEEEeCCCCCcccccccccccccccc
Confidence 344555 689999999999887542 2 223458999999999998886 7777632 222 1111110
Q ss_pred ---------------chhHHHHHHHHHHhhhc-Cce-EEEeCCC--------CCHHHHHHHHHhccC-eeccCcccc-HH
Q 020848 89 ---------------KTNFNQILEYVKDIRDM-GME-VCCTLGM--------LEKHQAIELKKAGLT-AYNHNLDTS-RE 141 (320)
Q Consensus 89 ---------------~~~~~~l~~~i~~~k~~-~~~-i~~~~g~--------l~~e~l~~L~~aGld-~v~i~let~-~~ 141 (320)
......+.+++++++++ ++. +.++.|. .+++.+++|.+.++. .+.+++|+. ++
T Consensus 368 c~~~~clfp~~c~nl~~d~~~l~~LLr~l~~l~gvkrv~isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~ 447 (620)
T PRK00955 368 CKNKQCLFPKPCKNLDVDHKEYLELLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDR 447 (620)
T ss_pred ccccccccCccccccCcChHHHHHHHHHHhccCCceEEEeecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChH
Confidence 01235688888888764 543 4444441 234578888887554 688999999 99
Q ss_pred HHhhhCCCC--CHHHHHHHH-HHHHHcCCe--eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCC
Q 020848 142 FYSKIITTR--SYDERLETL-KHVREAGIN--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQ 215 (320)
Q Consensus 142 ~~~~i~~~~--~~~~~l~~i-~~a~~~Gi~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~ 215 (320)
+++.|+++. .+++.++.+ +.+.+.|++ +..++|+|+ |||.+|+.++++++++++ ++.+.++.|.|.|||+..
T Consensus 448 VLk~M~K~~~~~~~~f~~~~~~i~~~~G~~~~I~~yfIvGfPGETeEDf~et~eflkel~--~~~~qV~~fTP~PGT~At 525 (620)
T PRK00955 448 VLKLMGKPSREVYDKFVKKFDRINKKLGKKQYLVPYLMSSHPGSTLEDAIELAEYTKDLG--YQPEQVQDFYPTPGTLST 525 (620)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhhhhcCCCccEEEEEEEECCCCCHHHHHHHHHHHHHcC--CCcceeeeeecCCCcchh
Confidence 999998763 234444333 345567876 889999999 999999999999999998 788999999999998653
No 104
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.66 E-value=3.8e-14 Score=128.79 Aligned_cols=198 Identities=17% Similarity=0.285 Sum_probs=142.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH----Hc--C---CCEEEEecccCCCCCCch-hHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK----EA--G---STRFCMGAAWRDTIGRKT-NFNQILEY 98 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~----~~--g---~~~i~l~~g~~~~~ge~~-~~~~l~~~ 98 (320)
.+.+|+++|.||..... +. .+.++.+||++.+.... .. | ++.|.+.|+ |||+ .++.+.++
T Consensus 108 sq~GC~~~C~FC~tg~~---g~--~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGm-----GEPLln~~~v~~~ 177 (354)
T PRK14460 108 CQVGCAMGCTFCSTGTM---GF--ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGM-----GEPLLNLDEVMRS 177 (354)
T ss_pred CCCCcCCCCccCCCCCC---CC--CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecC-----CcccCCHHHHHHH
Confidence 68899999999975421 21 23489999999984332 12 2 567777664 4664 45779999
Q ss_pred HHHhhh-cCc-----eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH-HHcC
Q 020848 99 VKDIRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REAG 166 (320)
Q Consensus 99 i~~~k~-~~~-----~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a-~~~G 166 (320)
++.+++ .|+ .+ ..|+|. .+.+++|.++|+..+.+|+++. ++.++++.+. .+.++++++++.. .+.|
T Consensus 178 l~~l~~~~Gl~~~~r~itvsT~G~--~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~ 255 (354)
T PRK14460 178 LRTLNNEKGLNFSPRRITVSTCGI--EKGLRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTR 255 (354)
T ss_pred HHHHhhhhccCCCCCeEEEECCCC--hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 999884 354 23 456786 6789999999999999999999 9999999774 3788888888764 3445
Q ss_pred Ceee--eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 167 INVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 167 i~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
-++. .-++-|.+++++|+.+++++++.++ ..|.+.+|.|.+|.++ ++++.+++.+....++..--...++-+
T Consensus 256 ~~v~iey~LI~GvNDs~ed~~~l~~~l~~~~---~~VnLIpyn~~~g~~y---~~p~~e~v~~f~~~l~~~Gi~vtir~~ 329 (354)
T PRK14460 256 ERVTFEYLLLGGVNDSLEHARELVRLLSRTK---CKLNLIVYNPAEGLPY---SAPTEERILAFEKYLWSKGITAIIRKS 329 (354)
T ss_pred CeEEEEEEEECCCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 4544 4555567899999999999999986 3689999999888876 357777777766665543223334433
No 105
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.9e-14 Score=125.56 Aligned_cols=193 Identities=18% Similarity=0.268 Sum_probs=137.5
Q ss_pred cccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhhc
Q 020848 28 IKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM 105 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~~ 105 (320)
+.+.|||++|.||..+..... .......+++|++...+. ...++..|+++| ||| .+++.+.++++.+|+.
T Consensus 40 vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~--~~~~~~gvt~SG------GEP~~q~e~~~~~~~~ake~ 111 (260)
T COG1180 40 VFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF--YSESGGGVTFSG------GEPTLQAEFALDLLRAAKER 111 (260)
T ss_pred EEeCCCCCCCCCCCChhHhcccccCchhhcCHHHHHHHhh--hcCCCCEEEEEC------CcchhhHHHHHHHHHHHHHC
Confidence 468899999999987653221 111222234444333322 223677888876 456 5779999999999988
Q ss_pred Cce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCH
Q 020848 106 GME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAE 181 (320)
Q Consensus 106 ~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ 181 (320)
|+. +..|||.++++.+++|.+. +|.+.+++... ++.|+.+... +.+.++++++.+.+.|+.+.+..++ |.+++.
T Consensus 112 Gl~~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~-~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~ 189 (260)
T COG1180 112 GLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA-DNEPVLENLELLADLGVHVEIRTLVIPGYNDDE 189 (260)
T ss_pred CCcEEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCC-CcHHHHHHHHHHHcCCCeEEEEEEEECCCCCCH
Confidence 998 4678999999999999998 99999999999 8889998744 4499999999999999986655555 445789
Q ss_pred HHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHH
Q 020848 182 EDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAR 233 (320)
Q Consensus 182 ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R 233 (320)
+++.++++++.+++. ...+.+.+|.|.. .+...++...+++-+....++
T Consensus 190 e~i~~i~~~i~~~~~-~~p~~~l~fhp~~--~~~~~p~~~~~~le~~~~~a~ 238 (260)
T COG1180 190 EEIRELAEFIADLGP-EIPIHLLRFHPDY--KLKDLPPTPVETLEEAKKLAK 238 (260)
T ss_pred HHHHHHHHHHHhcCC-cccEEEeccccCc--cccccCCCcHHHHHHhHhhhH
Confidence 999999999998763 4567777887632 333333333444444444444
No 106
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.65 E-value=2e-14 Score=132.83 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=123.0
Q ss_pred EeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhH--HHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNF--NQILEYV 99 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~--~~l~~~i 99 (320)
.+..+|..||++|.||........ .......|+.+.+.+.++.+... +...|.|+| |||+.. +.+.+++
T Consensus 7 ~~~~~t~~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~G------GEPll~~~~~~~~~~ 80 (370)
T PRK13758 7 LIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQG------GEPTLAGLEFFEELM 80 (370)
T ss_pred EEecCCCCcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEEC------CccccCChHHHHHHH
Confidence 444356899999999976532111 11122348888888887766554 334566665 466554 3345666
Q ss_pred HHhhhcC---ce---EEEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCe
Q 020848 100 KDIRDMG---ME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 100 ~~~k~~~---~~---i~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~ 168 (320)
+.+++.+ +. ..+|||. ++++.++.|++.|+ .|.+|+|+.++.++..++ ..+|+.++++++.+++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~ 159 (370)
T PRK13758 81 ELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVE 159 (370)
T ss_pred HHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCC
Confidence 6666443 32 3578886 78899999999886 899999999777777663 45899999999999999988
Q ss_pred eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee-eeec
Q 020848 169 VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA-LLAV 209 (320)
Q Consensus 169 v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~-~~p~ 209 (320)
+.+.+++. ..+.+++.++++++.+++ +..+.+.+ +.|.
T Consensus 160 ~~i~~~v~-~~n~~~l~~i~~~~~~~g--~~~~~~~~~~~p~ 198 (370)
T PRK13758 160 FNILCVVT-SNTARHVNKIYKYFKEKD--FKFLQFINCLDPL 198 (370)
T ss_pred ceEEEEec-cccccCHHHHHHHHHHcC--CCeEeeeeccCcc
Confidence 77777764 457788999999999998 66665543 3443
No 107
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=99.65 E-value=4.5e-15 Score=142.02 Aligned_cols=193 Identities=22% Similarity=0.318 Sum_probs=140.7
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHH-H
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVK-D 101 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~-~ 101 (320)
..+. ++.||+.+|.||..+... .++.+++++++++++...+.|...+.+..+....++.+ ...+...+.+. .
T Consensus 200 ~~ve-~~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~~~ 273 (490)
T COG1032 200 FSVE-TSRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKRFELLSLE 273 (490)
T ss_pred EEEE-eccCCCCCCCCCCCcccc-----cccCCCHHHHHHHHHHHHHHhhhcCcccccceeecCCccccchhhcccchHH
Confidence 4555 799999999999887532 23447888999888887777766644222222222222 12223333222 2
Q ss_pred hhhcC------ceEE---EeCCCCC-HHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHH-HHHHHHHcCCee
Q 020848 102 IRDMG------MEVC---CTLGMLE-KHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLE-TLKHVREAGINV 169 (320)
Q Consensus 102 ~k~~~------~~i~---~~~g~l~-~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~-~i~~a~~~Gi~v 169 (320)
+.+.+ +.+. .....++ ++.++.++++|..++.+++|+. +++++.+.++.+.++.++ +++.+.+.|+.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~ 353 (490)
T COG1032 274 LIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRV 353 (490)
T ss_pred HHHHhcccCceeeeeccccCchhcCHHHHHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCcee
Confidence 22221 1222 2334566 8889999999999999999999 999999999999999995 999999999999
Q ss_pred eeeEEEEe-CCCHHHHHHH---HHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHH
Q 020848 170 CSGGIIGL-GEAEEDRVGL---LHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIW 223 (320)
Q Consensus 170 ~~~~i~Gl-get~ed~~~~---l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~ 223 (320)
.+++|+|+ ||+.+|+.++ ++++.+++.. ..+.++.|+|.|+|++.........
T Consensus 354 ~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~-~~~~~~~~~p~p~t~~~~~~~~~~~ 410 (490)
T COG1032 354 KLYFIVGLPGETEEDVKETIELAKFIKKLGPK-LYVSPSPFVPLPGTPLQEMPKLENE 410 (490)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHHHhCcc-ceEEEeeeeCCCCCchhhcccccch
Confidence 99999999 9999999888 7888888832 4799999999999999876544333
No 108
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.64 E-value=8.1e-14 Score=126.81 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=139.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchhH-HHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNF-NQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~~-~~l~~~i~~~k~ 104 (320)
.+.|||++|.||..... +. .+.++.+||++.+..+.. .++..|.|.|- |||+.. +.+.++++.+++
T Consensus 107 sq~GC~l~C~fC~tg~~---g~--~r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~Gm-----GEPLln~d~v~~~i~~l~~ 176 (343)
T PRK14469 107 TQVGCPVKCIFCATGQS---GF--VRNLTTGEIVSQILAMEKEEKKKVGNVVYMGM-----GEPLLNYENVIKSIKILNH 176 (343)
T ss_pred ecCCCCCcCcCCCCCCC---Cc--cccCCHHHHHHHHHHHHHhccCCcCeEEEEcc-----ChhhhhHHHHHHHHHHHhc
Confidence 57999999999975431 21 233889999998865432 35788888762 577654 578899998852
Q ss_pred -----cCc-eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeee-
Q 020848 105 -----MGM-EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVC- 170 (320)
Q Consensus 105 -----~~~-~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~-Gi~v~- 170 (320)
.+. .+ ..|+|. .+.+++|.+.|++ .+.+|+++. ++.++.+.+ ..++++++++++.+.+. +.++.
T Consensus 177 ~~~~~~g~~~itisTnG~--~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i 254 (343)
T PRK14469 177 KKMKNIGIRRITISTVGI--PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTI 254 (343)
T ss_pred hhcccCCCCeEEEECCCC--hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 233 33 356775 6789999999998 699999999 888888754 45899999999976654 55544
Q ss_pred -eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 171 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 171 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.-++-|.+++.+|+.++.++++.++ ..|.+.+|.|.++ ...+++.+++.++...++...-...++
T Consensus 255 ~yvlI~g~NDs~ed~~~La~llk~~~---~~VnLIpynp~~~----~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 255 EYILIKGFNDEIEDAKKLAELLKGLK---VFVNLIPVNPTVP----GLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccC---cEEEEEecCCCCc----cCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 4455566889999999999999885 3678888888655 335567777666666655443333444
No 109
>PRK01254 hypothetical protein; Provisional
Probab=99.64 E-value=1.7e-14 Score=136.89 Aligned_cols=187 Identities=17% Similarity=0.243 Sum_probs=141.0
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc--CCCEEE--EecccCCCCCC----------
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA--GSTRFC--MGAAWRDTIGR---------- 88 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~--g~~~i~--l~~g~~~~~ge---------- 88 (320)
...|. .+.||+.+|+||+...+. + ......|.|+|+++++.+.+. |++.+. |+|.+...+|-
T Consensus 373 ~~sV~-i~RGC~g~CSFCaI~~hq--G-r~irSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~ 448 (707)
T PRK01254 373 RFSVN-IMRGCFGGCSFCSITEHE--G-RIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQT 448 (707)
T ss_pred EEEEE-EccCCCCCCCcccccccc--C-CeeeeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccc
Confidence 34555 689999999999987542 2 223457999999999999863 999988 66544444442
Q ss_pred ------------c---hhHHHHHHHHHHhhhc-Cce-EEEeCC----C--CCHHHHHHHHHhccC-eeccCcccc-HHHH
Q 020848 89 ------------K---TNFNQILEYVKDIRDM-GME-VCCTLG----M--LEKHQAIELKKAGLT-AYNHNLDTS-REFY 143 (320)
Q Consensus 89 ------------~---~~~~~l~~~i~~~k~~-~~~-i~~~~g----~--l~~e~l~~L~~aGld-~v~i~let~-~~~~ 143 (320)
+ .....+.+++++++++ |+. +.+..| . .+++.++.|.+..+. .+.+.+|+. ++++
T Consensus 449 C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VL 528 (707)
T PRK01254 449 CRRLSCVYPDICPHLDTDHEPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPL 528 (707)
T ss_pred cccccccCcccccccCCCHHHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHH
Confidence 0 1235788888888864 553 433333 1 258889999887765 678899999 9999
Q ss_pred hhhCCC--CCHHHHHHHHHHHHH-cCC--eeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC---CCCC
Q 020848 144 SKIITT--RSYDERLETLKHVRE-AGI--NVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVK---GTPL 214 (320)
Q Consensus 144 ~~i~~~--~~~~~~l~~i~~a~~-~Gi--~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~---gt~~ 214 (320)
+.|+++ ..+++..+.++.+++ .|. .+...+|+|+ |+|++|+.++++++++++ .+.-.++-|+|.| +|.|
T Consensus 529 k~M~Kp~~~~~e~F~e~f~rirk~~gk~q~LipyfIvGhPGeTeeDf~eLaefLkel~--f~~eQVQ~FTPtP~t~~T~M 606 (707)
T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNR--FRLDQVQNFYPSPMANATTM 606 (707)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHCCCCeEEEEeEEEECCCCCHHHHHHHHHHHHHhC--CCcceeeeeecCCCcCchHH
Confidence 999886 578888998888766 454 3667899998 999999999999999998 5556677899999 6655
Q ss_pred C
Q 020848 215 Q 215 (320)
Q Consensus 215 ~ 215 (320)
.
T Consensus 607 Y 607 (707)
T PRK01254 607 Y 607 (707)
T ss_pred H
Confidence 3
No 110
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.64 E-value=2.3e-14 Score=133.90 Aligned_cols=182 Identities=11% Similarity=0.175 Sum_probs=126.9
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHc-CCCEEE--EecccCCCCCCchhHHHHHH
Q 020848 22 QCTLLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEA-GSTRFC--MGAAWRDTIGRKTNFNQILE 97 (320)
Q Consensus 22 ~~~~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~-g~~~i~--l~~g~~~~~ge~~~~~~l~~ 97 (320)
++..+..++..||++|.||........ .......|+.|++.+.++.+.+. +...+. ++||+ |+......+..+++
T Consensus 13 ~~~~~kp~~~~CNl~C~yC~~~~~~~~~~~~~~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGE-PlL~~~~~~~~~~~ 91 (412)
T PRK13745 13 LYIMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGE-TLMRPLSFYKKALE 91 (412)
T ss_pred eEEEEeecCCCcCCCCcccCCcCCCcccccCccCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccc-cCCCcHHHHHHHHH
Confidence 344555455799999999987432110 00112348999999999887764 555544 45542 22211112334445
Q ss_pred HHHHh-hhcCceE-EEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeee
Q 020848 98 YVKDI-RDMGMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 98 ~i~~~-k~~~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
+++.. +..++.+ ..|||. ++++.++.|++.|+ .|.+|+|+.+++++..++ ..+|++++++++.+++.|+.+.
T Consensus 92 ~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~ 170 (412)
T PRK13745 92 LQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN 170 (412)
T ss_pred HHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE
Confidence 54432 2345653 467885 78999999999997 899999999767776653 3589999999999999999887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+++ ...|.+++.++++++.++| +..+.+.++.|
T Consensus 171 i~~vv-~~~n~~~~~e~~~~~~~lg--~~~~~~~p~~~ 205 (412)
T PRK13745 171 AMAVV-NDFNADYPLDFYHFFKELD--CHYIQFAPIVE 205 (412)
T ss_pred EEEEE-cCCccccHHHHHHHHHHcC--CCeEEEEeccC
Confidence 76666 5678888999999999998 77888888877
No 111
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.64 E-value=9.5e-14 Score=126.41 Aligned_cols=189 Identities=14% Similarity=0.257 Sum_probs=138.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCchh-HHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~ 101 (320)
...||+++|.||..... + ..+.++++||++.+..... .|+..|++.|+ |||+. ++.+.++++.
T Consensus 115 sqvGC~~~C~FC~t~~~---~--~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~Gm-----GEPLln~~~v~~~l~~ 184 (356)
T PRK14455 115 TQVGCRIGCTFCASTLG---G--LKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGI-----GEPFDNYDNVMDFLRI 184 (356)
T ss_pred CCCCCCCCCCcCCCCCC---C--CCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEecc-----ccccCCHHHHHHHHHH
Confidence 67899999999976532 2 2344899999998875322 24777877664 56754 7999999999
Q ss_pred hhh-cCc-----eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCe
Q 020848 102 IRD-MGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGIN 168 (320)
Q Consensus 102 ~k~-~~~-----~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~ 168 (320)
+++ .|+ .+ ..|+|.. ..+..|.+.+++ .+.+++++. ++.++++.+ ..+.++++++++.+.+ .+.+
T Consensus 185 l~~~~g~~~s~r~itvsT~G~~--~~i~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~ 262 (356)
T PRK14455 185 INDDKGLAIGARHITVSTSGIA--PKIYDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRR 262 (356)
T ss_pred HhcccCcccCCCceEEEecCch--HhHHHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCe
Confidence 985 455 43 4567765 356677777654 356899999 899997665 4578999999998766 4555
Q ss_pred eee--eEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHh
Q 020848 169 VCS--GGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 169 v~~--~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~ 235 (320)
+.+ -+|-|.+++.+++.+++++++.++ ..|.+.+|.|.++.++. +++.+++.++...++..
T Consensus 263 v~iey~lI~gvNDs~ed~~~La~ll~~l~---~~VnLIPynp~~~~ky~---~ps~e~l~~f~~~L~~~ 325 (356)
T PRK14455 263 VTFEYILLGGVNDQVEHAEELADLLKGIK---CHVNLIPVNPVPERDYV---RTPKEDIFAFEDTLKKN 325 (356)
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHhcCC---CcEEEEecCcCCCCCCc---CCCHHHHHHHHHHHHHC
Confidence 555 444466889999999999999985 47899999998887654 35677766666655543
No 112
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=99.63 E-value=1.2e-13 Score=124.64 Aligned_cols=221 Identities=17% Similarity=0.282 Sum_probs=157.9
Q ss_pred CCeeEEEEEeecccCCCCC-CCCCCCCCC-----CCCCCCC-------CcCCCCHHHHHHHHHHHHHcCCC----EEEEe
Q 020848 17 MEEVQQCTLLSIKTGGCSE-DCSYCPQSS-----RYDTGVK-------GQKLMTKDAVMQAAQKAKEAGST----RFCMG 79 (320)
Q Consensus 17 ~~~v~~~~~l~~~t~~C~~-~C~fC~~~~-----~~~~~~~-------~~~~~s~eei~~~~~~~~~~g~~----~i~l~ 79 (320)
..+|.+..++. .-.+||+ +|.||.... .+..+.. +...-+.+++...++.+...|-+ ++.|.
T Consensus 62 ~sgvaVVaVmt-~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliim 140 (515)
T COG1243 62 ISGVAVVAVMT-SPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 (515)
T ss_pred cccceEEEEec-CCCCCCCCeEEeCCCCCCCCCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceEEEEEe
Confidence 34444444444 5789998 999997652 1111110 12224678888888888888743 24445
Q ss_pred cccCCCCCCchhHHHHHHHHHHhhh--------------------cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 80 AAWRDTIGRKTNFNQILEYVKDIRD--------------------MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 80 ~g~~~~~ge~~~~~~l~~~i~~~k~--------------------~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
||+.+... ....++++..+..+.. .|+.+.+.+....++.+..|++.|+++|.+++||.
T Consensus 141 GGTFta~~-~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSi 219 (515)
T COG1243 141 GGTFTALS-LEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSI 219 (515)
T ss_pred cccccCCC-HHHHHHHHHHHHHhhhccchhHHHHHHhhcccccceeEEEEecCccccCHHHHHHHHhcCCcEEEEeeeeH
Confidence 55433222 2233444433333221 13556677778999999999999999999999999
Q ss_pred -HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHH-HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC
Q 020848 140 -REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEE-DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD 216 (320)
Q Consensus 140 -~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~e-d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~ 216 (320)
+++++...++|+.+++.++-+.++++|++++.++|.|+ |.+.+ |+....+.+.+=.-.++.+.+++-..++||++.+
T Consensus 220 yd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~ 299 (515)
T COG1243 220 YDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYE 299 (515)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcCcEEEEEecCCCCCCChHHHHHHHHHHHhCCCCCCCeEEEeeeEEECCchHHH
Confidence 99999999999999999999999999999999999999 66655 5555555544332248999999999999998853
Q ss_pred ------CCCCCHHHHHHHHHHHHHhCCCc
Q 020848 217 ------QKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 217 ------~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
..+.+.+|...+++.+-.++|.+
T Consensus 300 mwk~G~Ykpy~~EEaVeli~~i~~~~p~w 328 (515)
T COG1243 300 MWKRGLYKPYTTEEAVELIVEIYRLEPKW 328 (515)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46889999999998877777764
No 113
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.63 E-value=1.4e-13 Score=124.98 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=145.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---c------C--CCEEEEecccCCCCCCch-hHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---A------G--STRFCMGAAWRDTIGRKT-NFNQIL 96 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~------g--~~~i~l~~g~~~~~ge~~-~~~~l~ 96 (320)
.+.||+++|.||+... .+ -.+.++.+||++.+..+.. . | ++.|+|.| .|||+ .++.+.
T Consensus 127 sQvGC~m~C~FCatg~---~g--~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmG-----mGEPLlN~d~V~ 196 (373)
T PRK14459 127 SQAGCGMACPFCATGQ---GG--LTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMG-----MGEPLANYKRVV 196 (373)
T ss_pred ecCCCCCcCCCCCCCC---CC--CCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEec-----CCcchhhHHHHH
Confidence 6889999999997542 12 1344899999999976643 1 1 56677765 15786 489999
Q ss_pred HHHHHhhh-----cCc---eEEE-eCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH
Q 020848 97 EYVKDIRD-----MGM---EVCC-TLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHV 162 (320)
Q Consensus 97 ~~i~~~k~-----~~~---~i~~-~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a 162 (320)
++++.+++ .++ .+.+ |.|.. ..+++|.+.+++ .+.+|+++. ++.++++.+. .+.++++++++..
T Consensus 197 ~~i~~l~~~~~~g~gis~r~ITvST~Gl~--~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~ 274 (373)
T PRK14459 197 AAVRRITAPAPEGLGISARNVTVSTVGLV--PAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYY 274 (373)
T ss_pred HHHHHHhCcccccCCccCCEEEEECcCch--hHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence 99999986 355 3444 34643 478899998887 799999999 9999999873 5889999997775
Q ss_pred H-HcCCeeeee--EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc
Q 020848 163 R-EAGINVCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 163 ~-~~Gi~v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~ 239 (320)
. +.|.++.+. ++-|.++++++..++.++++.++.....|.+.+|.|+++.++. .++.+.+.++....+..--..
T Consensus 275 ~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIpyNp~~~~~y~---~~~~~~~~~F~~~L~~~gi~~ 351 (373)
T PRK14459 275 ADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIPLNPTPGSKWT---ASPPEVEREFVRRLRAAGVPC 351 (373)
T ss_pred HHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEccCCCCCCCCc---CCCHHHHHHHHHHHHHCCCeE
Confidence 4 668775555 4556689999999999999988422357899999999887664 356666666666555433233
Q ss_pred eeecC
Q 020848 240 MVRLS 244 (320)
Q Consensus 240 ~i~~~ 244 (320)
.+|.+
T Consensus 352 tiR~~ 356 (373)
T PRK14459 352 TVRDT 356 (373)
T ss_pred EeeCC
Confidence 34433
No 114
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.62 E-value=1.3e-13 Score=126.25 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=139.3
Q ss_pred EEeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchhHHHHHHHHHHh
Q 020848 24 TLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDI 102 (320)
Q Consensus 24 ~~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~ 102 (320)
..++ +|+.||++|.||....... ....++.++..+.+..+.+.| ...+.++| |||+..+++.++++.+
T Consensus 21 ~~~~-~t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v~~~g------GEPll~~d~~ei~~~~ 89 (347)
T COG0535 21 VGIE-LTNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVVIFTG------GEPLLRPDLLEIVEYA 89 (347)
T ss_pred EEEe-eccccCCcCcccccccCCC----CccccCHHHHHHHHHHHHHcCCeeEEEEeC------CCccccccHHHHHHHH
Confidence 3445 7999999999997764311 123388999988888888888 65555554 5787889999999999
Q ss_pred hhc-CceE-EEeCCC-CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC-CCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 103 RDM-GMEV-CCTLGM-LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT-TRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 103 k~~-~~~i-~~~~g~-l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
++. ++.+ ..|||. ++++.++.|+++|++.+.+++|+. ++.+..++. ...++..+++++.+.+.|+.+.+.+++ .
T Consensus 90 ~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-~ 168 (347)
T COG0535 90 RKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-T 168 (347)
T ss_pred hhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-e
Confidence 854 6664 567774 778999999999999999999999 888788776 568999999999999999885555555 5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
..+.+++.+.++.+.+++ +..+.+..++|.+
T Consensus 169 ~~n~~~l~~~~~~~~~~g--~~~~~~~~~~~~g 199 (347)
T COG0535 169 KINYDELPEIADLAAELG--VDELNVFPLIPVG 199 (347)
T ss_pred cCcHHHHHHHHHHHHHcC--CCEEEEEEEeecc
Confidence 678999999999999998 6788888888876
No 115
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=99.61 E-value=1.6e-15 Score=111.14 Aligned_cols=91 Identities=43% Similarity=0.662 Sum_probs=70.1
Q ss_pred eeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC-CChh
Q 020848 203 INALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN-NDFD 281 (320)
Q Consensus 203 ~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~-~~~~ 281 (320)
++.|+|.+|||+++.++++.++++++++++|+++|+..|++++|+.....+.+..++.+|+|++++|+ |+|+.+ ++++
T Consensus 2 in~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~sg~n~~~~G~-ylt~~g~~~~~ 80 (93)
T PF06968_consen 2 INFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFMSGANSIMVGG-YLTTSGNRSVD 80 (93)
T ss_dssp EEE----TTSTTTTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHCCT--EEE-CS-BTSSSCTSHHH
T ss_pred eeeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHhcccceeEECC-ccccCCCCCHH
Confidence 44599999999998899999999999999999999999999999865344467799999999999999 777776 9999
Q ss_pred HHHHHHHHcCCCc
Q 020848 282 ADQLMFKVLGLTP 294 (320)
Q Consensus 282 ~~~~~i~~~G~~p 294 (320)
++++||+++||+|
T Consensus 81 ~d~~~i~~lG~~P 93 (93)
T PF06968_consen 81 EDIEMIEKLGLEP 93 (93)
T ss_dssp HHHHHHHHTT-ES
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999987
No 116
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.61 E-value=3.8e-14 Score=123.34 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=136.8
Q ss_pred ccC-CCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 29 KTG-GCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~-~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~------g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
.+- .|+++|.||...........+..+...+.|.+..+.+... .++.+.|++. |||.++++|-++|+.
T Consensus 29 P~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~-----GEPTLy~~L~elI~~ 103 (296)
T COG0731 29 PSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLS-----GEPTLYPNLGELIEE 103 (296)
T ss_pred cchhhhcCCCeEEecccCCCCCCCCCceecHHHHHHHHHHHhcccccccCCCCEEEEeCC-----CCcccccCHHHHHHH
Confidence 455 8999999997743322222345558899999999887765 4677888753 789999999999999
Q ss_pred hhhcC-ce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC---CHHHHHHHHHHHHHc-CCe--eeee
Q 020848 102 IRDMG-ME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREA-GIN--VCSG 172 (320)
Q Consensus 102 ~k~~~-~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~---~~~~~l~~i~~a~~~-Gi~--v~~~ 172 (320)
+|+.| +. +.+|||.+ ++.++.|.. .|.+.+++|+. ++.|+++++++ +|++++++++.+++. .-. +.+.
T Consensus 104 ~k~~g~~~tflvTNgsl-pdv~~~L~~--~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~t 180 (296)
T COG0731 104 IKKRGKKTTFLVTNGSL-PDVLEELKL--PDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTT 180 (296)
T ss_pred HHhcCCceEEEEeCCCh-HHHHHHhcc--CCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCCcEEEEEE
Confidence 99887 55 57899988 888888873 79999999999 89999999864 799999999999996 334 4555
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
++=|++.+.+++.+..++++... ++.|.+..++-.|
T Consensus 181 lvkg~N~~~e~~~~~a~ll~~~~--Pd~velk~~~rpg 216 (296)
T COG0731 181 LVKGINDDEEELEEYAELLERIN--PDFVELKTYMRPG 216 (296)
T ss_pred EeccccCChHHHHHHHHHHHhcC--CCeEEEecCccCC
Confidence 56566777777999999999997 7888888877544
No 117
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.61 E-value=2.4e-13 Score=123.14 Aligned_cols=198 Identities=17% Similarity=0.243 Sum_probs=140.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C-----CCEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G-----STRFCMGAAWRDTIGRK-TNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g-----~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~ 101 (320)
++.+|+++|.||..... + ..+.++.+||++.+...... | ++.|.|.|. ||| ..++.+.+.++.
T Consensus 99 sq~GC~l~C~fC~tg~~---g--~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~Gm-----GEPlln~~~v~~~i~~ 168 (343)
T PRK14468 99 TMVGCPAGCAFCATGAM---G--FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGM-----GEPLLNYENVLKAARI 168 (343)
T ss_pred ecCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEecc-----CccccCHHHHHHHHHH
Confidence 68899999999976431 2 23448999999988765443 2 457878763 456 346889999988
Q ss_pred hh-hcCc-----eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCe
Q 020848 102 IR-DMGM-----EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGIN 168 (320)
Q Consensus 102 ~k-~~~~-----~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~-~~Gi~ 168 (320)
+. ..++ .+ ..|+|. ...+++|.+.|++ .+.+|+++. ++.++++.+ ..++++++++++... +.+.+
T Consensus 169 l~~~~g~~l~~r~itvST~G~--~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~ 246 (343)
T PRK14468 169 MLHPQALAMSPRRVTLSTVGI--PKGIRRLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRR 246 (343)
T ss_pred hcccccccccCceEEEECCCC--hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCe
Confidence 74 3333 23 356774 4678899998887 689999999 899999975 347899999998544 45555
Q ss_pred eeeeE--EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 169 VCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 169 v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
+.+.. +-|.+++.+++.++.++++.+. ..+.+.+|.|+++.. ..+++.+++.+..+.++..--...+|-+
T Consensus 247 V~ieyvLI~GvNDs~e~~~~L~~ll~~~~---~~VnLIPynp~~~~~---~~~ps~e~i~~f~~~L~~~Gi~vtiR~~ 318 (343)
T PRK14468 247 VTLEYTMLKGVNDHLWQAELLADLLRGLV---SHVNLIPFNPWEGSP---FQSSPRAQILAFADVLERRGVPVSVRWS 318 (343)
T ss_pred EEEEEEEeCCCcCCHHHHHHHHHHHhcCC---cEEEEEcCCCCCCCC---CCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 55544 4466799999999999999884 478888888876643 3567777766666655543333344433
No 118
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=99.61 E-value=3.6e-15 Score=109.61 Aligned_cols=93 Identities=51% Similarity=0.750 Sum_probs=84.2
Q ss_pred eeeeeeecCCCCCCCC-CCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCCh
Q 020848 202 PINALLAVKGTPLQDQ-KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDF 280 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~-~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~ 280 (320)
+++.|+|++|||+++. +..+.++++++++++|+++|+..+++++|+..+.++.+..++.+|||.+++|+.|+|+.+...
T Consensus 1 pin~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan~~~~G~~~lt~~g~~~ 80 (94)
T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94)
T ss_pred CCCccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCceeeeCCccccCCCcCc
Confidence 3678999999999887 789999999999999999999999999988766667778889999999999987999999998
Q ss_pred hHHHHHHHHcCCCc
Q 020848 281 DADQLMFKVLGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~~G~~p 294 (320)
.++++|++++||+|
T Consensus 81 ~~d~~~i~~~g~~~ 94 (94)
T smart00876 81 ADDVAMLEKLGLEP 94 (94)
T ss_pred HHHHHHHHHcCCCC
Confidence 88999999999986
No 119
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.60 E-value=4.3e-13 Score=122.06 Aligned_cols=188 Identities=15% Similarity=0.236 Sum_probs=135.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH------cCCCEEEEecccCCCCCCch-hHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE------AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~------~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~ 101 (320)
...+|+++|.||..... + ..+.++.+||++.+..+.. .+++.|+|.|. |||+ .++.+.++++.
T Consensus 111 sQ~GC~l~C~fC~t~~~---g--~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGm-----GEPLln~d~v~~~l~~ 180 (355)
T TIGR00048 111 SQVGCALGCTFCATAKG---G--FNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGM-----GEPLLNLNEVVKAMEI 180 (355)
T ss_pred cCCCCCCcCCCCCCCCC---C--CCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecC-----CchhhCHHHHHHHHHH
Confidence 57799999999976431 2 1234899999998765432 23666777663 5674 45789999998
Q ss_pred hhh-cC--c---eE-EEeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 020848 102 IRD-MG--M---EV-CCTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 168 (320)
Q Consensus 102 ~k~-~~--~---~i-~~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~ 168 (320)
+++ .| + .+ ..|+|.+ +.+++|.+.+++ .+.+|+++. ++.++++.+. .++++++++++. +.+.|.+
T Consensus 181 l~~~~g~~i~~~~itisT~G~~--~~i~~l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~ 258 (355)
T TIGR00048 181 MNDDFGLGISKRRITISTSGVV--PKIDILADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRR 258 (355)
T ss_pred hhcccccCcCCCeEEEECCCch--HHHHHHHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCE
Confidence 873 33 4 34 3567865 678899888887 578999999 8999998763 468999988876 4557777
Q ss_pred eeee--EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 169 VCSG--GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 169 v~~~--~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
+.+. ++-|.+++.+++.++.++++.++ .+|.+.+|.|+++.++ .+++.+++.++....+.
T Consensus 259 VtieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~ 320 (355)
T TIGR00048 259 VTFEYVLLDGVNDQVEHAEELAELLKGTK---CKVNLIPWNPFPEADY---ERPSNEQIDRFAKTLMS 320 (355)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhcCC---CceEEEecccCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 5544 45566788899999999999985 3688889988877665 34667776665555543
No 120
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.60 E-value=1.5e-15 Score=127.16 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=154.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GM 107 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~ 107 (320)
.|..||++|.||..+... +..+...+++.+++++.++.....|++.+-|.+ |+|..++++.+.+..+.+. ++
T Consensus 17 lte~cnlrc~ycMpsegv-~l~pk~~~lav~eilrl~~~F~~qgv~knrLtg------geptIr~di~~i~~g~~~l~gL 89 (323)
T KOG2876|consen 17 LTEKCNLRCQYCMPSEGV-PLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTG------GEPLIRQDIVPIVAGLSSLPGL 89 (323)
T ss_pred hhhccccccceechhcCC-cCccchhhcchhhhHHhhhhhhHhhhhhhhhcC------CCCcccccccchhhhhhcccch
Confidence 689999999999876432 123445668999999999999999999985554 6777778888887777643 44
Q ss_pred e--EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHH
Q 020848 108 E--VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEED 183 (320)
Q Consensus 108 ~--i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed 183 (320)
+ -.+++|......+-+|.++|++.+++++|+. ++.+..+.+...+..++..++.+.+.|.. +.+++++--+.+.++
T Consensus 90 ks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e 169 (323)
T KOG2876|consen 90 KSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE 169 (323)
T ss_pred hhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCc
Confidence 4 2477899999999999999999999999999 89999999999999999999999999886 778877744777777
Q ss_pred HHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 020848 184 RVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a 230 (320)
+.+++..-+.. +-.|.+..|+|..|..|......+..+.+.++.
T Consensus 170 v~Dfv~~tr~~---p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~ 213 (323)
T KOG2876|consen 170 VFDFVLLTRMR---PLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV 213 (323)
T ss_pred ccceeeecCCC---CcceEEEEecccCCCcccccccccHHHHHHHHh
Confidence 77777655544 456899999999999988777778887766654
No 121
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.59 E-value=3.9e-13 Score=121.11 Aligned_cols=185 Identities=16% Similarity=0.208 Sum_probs=137.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchh-HHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~k~ 104 (320)
.+.+|+++|.||..... +.. +.++.+||++.+..+.+ ..++.|+|.|- |||+. ++.+.++++.+++
T Consensus 103 sq~GC~l~C~fC~tg~~---g~~--r~l~~~EI~~qi~~~~~~~~~~i~nIvfmGm-----GEPllN~d~v~~~i~~l~~ 172 (336)
T PRK14470 103 SQAGCALGCAFCATGKL---GLD--RSLRSWEIVAQLLAVRADSERPITGVVFMGQ-----GEPFLNYDEVLRAAYALCD 172 (336)
T ss_pred CCCCcCCCCccccCCCC---CCC--CCCCHHHHHHHHHHHHHhcCCCCCEEEEEec-----CccccCHHHHHHHHHHHhC
Confidence 68899999999987532 211 23688888888866543 24778888762 57765 6889999999884
Q ss_pred c------CceE-EEeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHHcCCe--ee
Q 020848 105 M------GMEV-CCTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVREAGIN--VC 170 (320)
Q Consensus 105 ~------~~~i-~~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~~Gi~--v~ 170 (320)
. +..+ ..|+|.+ ..+++|.+.|. +.+.+|+++. ++.++++.+. .+++..+++++.+.+.+.+ +.
T Consensus 173 ~~~~~~~~~~ItVsTnG~~--p~i~~l~~~~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ie 250 (336)
T PRK14470 173 PAGARIDGRRISISTAGVV--PMIRRYTAEGHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLE 250 (336)
T ss_pred ccccccCCCceEEEecCCh--HHHHHHHhcCCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEE
Confidence 2 2344 3567874 46667777776 7899999999 9999998774 4899999999998887665 44
Q ss_pred eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
..++-|.+++++|+.++.++++.+. .++.+.+|.|.++ ...+++.+++.++....
T Consensus 251 yvLI~GvNDseeda~~La~llk~l~---~~vnlI~~N~~~~----~~~~p~~~~i~~f~~~l 305 (336)
T PRK14470 251 YVMISGVNVGEEDAAALGRLLAGIP---VRLNPIAVNDATG----RYRPPDEDEWNAFRDAL 305 (336)
T ss_pred EEEEecccCCHHHHHHHHHHHhcCC---CeEEEeccCCCCC----CccCCCHHHHHHHHHHH
Confidence 5556677899999999999999885 3678888888555 34567788777766655
No 122
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.59 E-value=3e-13 Score=124.39 Aligned_cols=169 Identities=15% Similarity=0.234 Sum_probs=129.2
Q ss_pred cCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEE--EeCC--CCCHHHHHHHH
Q 020848 53 QKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC--CTLG--MLEKHQAIELK 125 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~--~~~g--~l~~e~l~~L~ 125 (320)
...++++|++++++....+ ....+.+.|| |+|..++++.++++.+|+.++.+. .|+| ..+++.+++|+
T Consensus 51 g~~~t~~evl~ev~~d~~~~~~~~ggVtisGG-----Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~ 125 (404)
T TIGR03278 51 GDFIPPQVVLGEVQTSLGFRTGRDTKVTISGG-----GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLI 125 (404)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCCEEEEECC-----cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHH
Confidence 3448999999999876653 3457777775 467788999999999998777743 2675 45899999999
Q ss_pred HhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCH-HHHHHHHHHHhcCCCCCCeeee
Q 020848 126 KAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 126 ~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
++|+|.+.+++++. ++.++++.+....+.+++.++.+.+ ++.+.+-+++-.|-|+ +++.++++++.+++ +..+.+
T Consensus 126 ~~gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg--~~~V~L 202 (404)
T TIGR03278 126 DNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG--AKALIL 202 (404)
T ss_pred HcCCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC--CCEEEE
Confidence 99999999999999 9999998776667999999999988 5665555555345554 45579999999998 778899
Q ss_pred eeeeecCCC-------CC-CCCCCCCHHHHHHHH
Q 020848 204 NALLAVKGT-------PL-QDQKPVEIWEMIRMI 229 (320)
Q Consensus 204 ~~~~p~~gt-------~~-~~~~~~~~~e~~~~~ 229 (320)
.+|.+.... +. ....+.+.+++.+++
T Consensus 203 ~~y~~~g~~ky~lg~~~~~~~~~~~~~~e~~~~v 236 (404)
T TIGR03278 203 MRFANTEEQGLILGNAPIIPGIKPHTVSEFKNIV 236 (404)
T ss_pred EecccccccccccCCcCcccCCCCCCHHHHHHHH
Confidence 999864422 11 124466777777763
No 123
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=99.57 E-value=9.7e-14 Score=119.85 Aligned_cols=203 Identities=24% Similarity=0.376 Sum_probs=149.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCC-----C--CcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGV-----K--GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~-----~--~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~ 101 (320)
+-++|-.+|.||++++....+. . ..+....+++++-..... ..+++++++- .. .|....++...++.
T Consensus 37 ~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~---i~--~p~~~~d~~~i~~~ 110 (339)
T COG2516 37 YPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQ---IA--YPRALNDLKLILER 110 (339)
T ss_pred cCCceeechhhChhhhhcccCCCcceeeecccccchHHHHHhHhhhhh-ccccccccee---ec--cccccchhhhhhhh
Confidence 5599999999998876432221 1 122244556555543322 2367888863 22 24456777777888
Q ss_pred hh-hcCceEEEe----CCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC----CCCHHHHHHHHHHHHHc-C-Cee
Q 020848 102 IR-DMGMEVCCT----LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT----TRSYDERLETLKHVREA-G-INV 169 (320)
Q Consensus 102 ~k-~~~~~i~~~----~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~----~~~~~~~l~~i~~a~~~-G-i~v 169 (320)
++ ..+.++.++ .-.+ .+.+...+++|.|.+.+.+|.. +++|+++++ .++|++.++.++.+.++ | .++
T Consensus 111 ~~~~~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~~k~rv 189 (339)
T COG2516 111 LHIRLGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAFGKGRV 189 (339)
T ss_pred hhhccCCceehhhhhhcccc-hHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccCCc
Confidence 77 666665433 2222 8999999999999999999999 899998843 37899999999998874 5 569
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
.+++++|+|+++.++.+.+..+...+ -.++++.|.|..||.|.+..+++.+. ++.++.++.++......
T Consensus 190 ~ihliVglGesD~~~ve~~~~v~~~g---~~v~Lfaf~P~~gt~me~r~~~pve~-Yrk~q~a~yli~~G~v~ 258 (339)
T COG2516 190 GIHLIVGLGESDKDIVETIKRVRKRG---GIVSLFAFTPLKGTQMENRKPPPVER-YRKIQVARYLIGNGEVD 258 (339)
T ss_pred ceeEEeccCCchHHHHHHHHHHHhcC---ceEEEEEecccccccccCCCCCcHHH-HHHHHHHHHHHhcCccc
Confidence 99999999999999999999999997 36899999999999999988776666 45556666666654443
No 124
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.57 E-value=1.2e-12 Score=118.91 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=138.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhh-c
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRD-M 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~-~ 105 (320)
.+.+|+++|.||.... . +. .+.++.+||++.+..+.. .+++.|.|.|. ||| ..++.+.++++.+++ .
T Consensus 109 sq~GC~~~C~FC~tg~-~--~~--~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~-----GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 109 SQVGCAMGCAFCLTGT-F--RL--TRNLTTAEIVNQVCAVKRDVPVRNIVFMGM-----GEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred ecCCcCCCCccCCCCC-C--CC--CCCCCHHHHHHHHHHHHhcCCccEEEEecC-----CcchhcHHHHHHHHHHhhccc
Confidence 7899999999997542 1 22 344899999998876654 47889988774 345 346788888888873 4
Q ss_pred Cc-----eE-EEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHc-CCeeee--e
Q 020848 106 GM-----EV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREA-GINVCS--G 172 (320)
Q Consensus 106 ~~-----~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~-Gi~v~~--~ 172 (320)
|+ .+ ..|+|.+ ..+.+|.+..--.+.+|+++. ++.++.+.+ ..+.++++++++..... +.++.+ .
T Consensus 179 gl~~s~r~itVsTnGl~--~~i~~l~~~~~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyv 256 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLV--PEMEELGREVTVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYV 256 (349)
T ss_pred ccCcCCceEEEECCCch--HHHHHHhhccCeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 54 33 3467853 345555544322455899999 999999854 45788999888776653 345554 4
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++-|.+++.+++.++.++++.++ ..|.+.+|.|.+|.. .++++.+++.+....++...-...+|-+
T Consensus 257 LI~GvNDs~e~~~~L~~ll~~l~---~~vnlIPyn~~~~~~---~~~ps~e~i~~f~~~L~~~gi~v~vR~~ 322 (349)
T PRK14463 257 MIRGLNDSLEDAKRLVRLLSDIP---SKVNLIPFNEHEGCD---FRSPTQEAIDRFHKYLLDKHVTVITRSS 322 (349)
T ss_pred EeCCCCCCHHHHHHHHHHHhccC---ceEEEEecCCCCCCC---CCCCCHHHHHHHHHHHHHCCceEEEeCC
Confidence 45566889999999999999986 378888888877643 4567788777776666654444445544
No 125
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.56 E-value=6.5e-13 Score=121.34 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=131.0
Q ss_pred ccCC-CCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCE--EEEecccCCCCCCchhHHHHHHHHHHhhh
Q 020848 29 KTGG-CSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTR--FCMGAAWRDTIGRKTNFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~-C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~--i~l~~g~~~~~ge~~~~~~l~~~i~~~k~ 104 (320)
+|+. ||++|.||....... ....||.|.+.+.++.+.+. +.+. |.++||.+...| +..++.+..+.++.+.
T Consensus 13 pt~~~CNL~C~YC~~~~~~~----~~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~-~~f~~~~~~l~~k~~~ 87 (378)
T COG0641 13 PTGFECNLDCKYCFYLEKES----LQRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAG-LDFYRKAVALQQKYAN 87 (378)
T ss_pred cccCccCCCCCeeCcccCCC----CCCCCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccch-HHHHHHHHHHHHHHhc
Confidence 5677 999999998764321 11259999999988877764 4466 556665322222 2223333333333333
Q ss_pred cCce---EEEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC----CCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 105 MGME---VCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT----TRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 105 ~~~~---i~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~----~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
+.. ...|||. ++++.++.|++.|+ .|.+|+|+.++++++.++ ..+|++++++|+.+++.++++.+..++
T Consensus 88 -~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~~vv- 164 (378)
T COG0641 88 -GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTLTVV- 164 (378)
T ss_pred -CCeeEEEEEEcccccCHHHHHHHHhcCc-eEEEeccCchHhccccccCCCCCccHHHHHHHHHHHHHcCCcEEEEEEE-
Confidence 443 3467775 89999999999999 999999999888887763 458999999999999999888777775
Q ss_pred eCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC--CCCCCCCCHHHHHHHH
Q 020848 177 LGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP--LQDQKPVEIWEMIRMI 229 (320)
Q Consensus 177 lget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~--~~~~~~~~~~e~~~~~ 229 (320)
..++.+...++++++.+.+ ...+.|.+.++..++. +.+ ...+.+++.+.+
T Consensus 165 ~~~n~~~~~ei~~~l~~~g--~~~i~fip~~~~~~~~~~~~~-~~~~~~~~~~fl 216 (378)
T COG0641 165 NRQNVLHPEEIYHFLKSEG--SKFIQFIPLVESDNRGDSLLE-FSVTAEEYGQFL 216 (378)
T ss_pred chhHhhCHHHHHHHHHHcc--cceEEEEecccCCCCCccccc-cccCHHHHHHHH
Confidence 4788889999999999998 6677776665544332 222 234455544443
No 126
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.55 E-value=3.3e-12 Score=114.67 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=138.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh-c
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD-M 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~-~ 105 (320)
.+-||+++|.||.-... +.. +.++.+||+..+..+.. .+++.|+|.|- |||+ .++.+++.++.+++ .
T Consensus 109 sQvGC~~~C~FC~Tg~~---g~~--rnLt~~EIl~Qv~~~~~~~~i~nIvfmGm-----GEPL~N~d~vi~al~~l~~~~ 178 (345)
T PRK14466 109 SQVGCKMNCLFCMTGKQ---GFT--GNLTAAQILNQIYSLPERDKLTNLVFMGM-----GEPLDNLDEVLKALEILTAPY 178 (345)
T ss_pred cCCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHhhhhcCCCCeEEEeee-----CcCcccHHHHHHHHHHHhhcc
Confidence 56799999999985431 222 23899999999987643 25888988762 4564 46888898888873 3
Q ss_pred Cc-----eEE-EeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCeee--ee
Q 020848 106 GM-----EVC-CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGINVC--SG 172 (320)
Q Consensus 106 ~~-----~i~-~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~v~--~~ 172 (320)
|+ .+. .|+|.. ..+++|.+..-..+.+|+++. ++.++++.+. .++++++++++...+ .+-++. ..
T Consensus 179 g~~~s~r~ItVsT~G~~--~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~ 256 (345)
T PRK14466 179 GYGWSPKRITVSTVGLK--KGLKRFLEESECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYI 256 (345)
T ss_pred ccCcCCceEEEEcCCCc--hHHHHHhhccCcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 43 343 456743 223444333234667999999 8999999884 478999999998554 344444 44
Q ss_pred EEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 173 GIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 173 ~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++=|.+++.+|+.++.++++.++ .+|.+.+|.|+|+.++ .+++.+.+.+.....+...-...+|-+
T Consensus 257 Li~gvND~~e~a~~L~~ll~~~~---~~VNLIp~Np~~~~~~---~~~s~~~~~~F~~~L~~~gi~~tvR~s 322 (345)
T PRK14466 257 VFKGLNDSLKHAKELVKLLRGID---CRVNLIRFHAIPGVDL---EGSDMARMEAFRDYLTSHGVFTTIRAS 322 (345)
T ss_pred EeCCCCCCHHHHHHHHHHHcCCC---ceEEEEecCCCCCCCC---cCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 55567899999999999999885 5799999999998644 456777776776666654444455543
No 127
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.54 E-value=4.4e-13 Score=120.09 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCchhHHHH-HHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKTNFNQI-LEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~~~~~l-~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld 130 (320)
++.+++.+.+..... .+...|.|+| |||+..+++ .++++.+++.|+.+ ..|||.+..+.+.+|... +|
T Consensus 106 ~t~eel~~~i~~~~~~~~~~~~~V~~sG------GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~-~d 178 (295)
T TIGR02494 106 MTVEEVMRVVLRDSIFYRNSGGGVTLSG------GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPY-VD 178 (295)
T ss_pred CcHHHHHHHHHHHHHhcccCCCcEEeeC------cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhh-CC
Confidence 578888888765432 2335676765 578777776 59999999888764 568898888888888764 78
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+++++. ++.|+.+++ .+++.++++++.+.+.|.++.+.+ +.|..++.+++.++++++.+++..+..+.+.+|.
T Consensus 179 ~~~isl~~~~~~~~~~~~g-~~~~~vl~~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 179 LFLFDIKHLDDERHKEVTG-VDNEPILENLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEEeeccCChHHHHHHhC-CChHHHHHHHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 899999999 889988754 578999999999999998766655 4445678899999999999987324678888888
Q ss_pred ecCCCCC---------CCCCCCCHHHHHHHHHHH
Q 020848 208 AVKGTPL---------QDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 208 p~~gt~~---------~~~~~~~~~e~~~~~a~~ 232 (320)
|.+..++ .+.+.++.+++.++...+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 291 (295)
T TIGR02494 258 RLGENKYRQLGREYPDSEIPDPAEEQLLELKEIF 291 (295)
T ss_pred chhHHHHHHhCCCCccCCCCCCCHHHHHHHHHHH
Confidence 8764433 344567777776655443
No 128
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.53 E-value=3.2e-12 Score=115.68 Aligned_cols=197 Identities=13% Similarity=0.200 Sum_probs=141.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc------CCCEEEEecccCCCCCCc-hhHHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA------GSTRFCMGAAWRDTIGRK-TNFNQILEYVKD 101 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~------g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~ 101 (320)
...||+.+|.||.-... +. .+.++.+||++.+..+... .+..+++.|+ ||| ..++.+.++++.
T Consensus 116 sQvGC~~~C~FCatg~~---g~--~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGm-----GEPL~N~d~v~~~l~~ 185 (356)
T PRK14462 116 SQVGCKVGCAFCLTAKG---GF--VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGM-----GEPLDNLDNVSKAIKI 185 (356)
T ss_pred ccccCCCCCccCCCCCC---CC--cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCC-----cccccCHHHHHHHHHH
Confidence 56799999999976431 21 2448999999999765442 1446766654 566 467889999999
Q ss_pred hhh-cCce-----EE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCe
Q 020848 102 IRD-MGME-----VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGIN 168 (320)
Q Consensus 102 ~k~-~~~~-----i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~ 168 (320)
+++ .|+. +. .|.|.. +.+++|.+.++ -.+.+|+.+. ++.++++.+. .+.++++++++. +.+.|-+
T Consensus 186 l~~~~Gl~~~~r~itVsTsG~~--~~i~~L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~ 263 (356)
T PRK14462 186 FSENDGLAISPRRQTISTSGLA--SKIKKLGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKR 263 (356)
T ss_pred hcCccCCCcCCCceEEECCCCh--HHHHHHHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCe
Confidence 996 4652 33 356755 47778887755 3466789999 8999998873 356889998885 4466666
Q ss_pred --eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 169 --VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 169 --v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+..-+|-|.+++.+++.++.++++.++ ..|.+.+|.|.++.++ ++++.+++.+....++...-...++-
T Consensus 264 i~ieyvLI~GvNDs~e~a~~La~llk~l~---~~VnLIPyn~~~~~~~---~~ps~e~i~~f~~~l~~~gi~vtvR~ 334 (356)
T PRK14462 264 VMFEYLVIKDVNDDLKSAKKLVKLLNGIK---AKVNLILFNPHEGSKF---ERPSLEDMIKFQDYLNSKGLLCTIRE 334 (356)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHhhcC---cEEEEEeCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 455566677899999999999999985 4899999999888766 45677777776666654333334443
No 129
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=7.9e-12 Score=113.11 Aligned_cols=196 Identities=14% Similarity=0.259 Sum_probs=139.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
+..||+++|.||..... +. .+.++.+||++.+..+... ++..|+|.|- |||+ .++.+.++++.+++
T Consensus 107 sqvGC~~~C~FC~tg~~---g~--~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGm-----GEPlln~~~v~~~i~~l~~ 176 (345)
T PRK14457 107 SQVGCPMACDFCATGKG---GL--KRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGM-----GEPLLNIDEVLAAIRCLNQ 176 (345)
T ss_pred CCCCCCCcCCcCCCCCC---CC--ccccCHHHHHHHHHHHHHHhcCCCCEEEEEec-----CccccCHHHHHHHHHHHhc
Confidence 56799999999976431 21 2238999999998876543 5778888762 4663 46789999999874
Q ss_pred -cCc---eEE-EeCCCCCHHHHHHHHHhc------cC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCC
Q 020848 105 -MGM---EVC-CTLGMLEKHQAIELKKAG------LT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGI 167 (320)
Q Consensus 105 -~~~---~i~-~~~g~l~~e~l~~L~~aG------ld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi 167 (320)
.++ .+. .|.|. .+.+++|.+.+ ++ .+.+|+++. ++.++++.+. .+.++.+++++. +.+.|-
T Consensus 177 ~~~i~~r~itvST~G~--~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr 254 (345)
T PRK14457 177 DLGIGQRRITVSTVGV--PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR 254 (345)
T ss_pred ccCCccCceEEECCCc--hhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC
Confidence 455 343 34564 34588888776 33 478999999 9999998773 367888877765 666775
Q ss_pred e--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 168 N--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 168 ~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
+ +..-+|-|.+++++++.++.++++.++ .+|.+.+|.|.++.++ .+++.+++.+..+.++..--...++
T Consensus 255 ~I~iey~LIpGvNDs~e~a~~La~~l~~l~---~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~Gi~vtvR 325 (345)
T PRK14457 255 RVSFEYILLGGVNDLPEHAEELANLLRGFQ---SHVNLIPYNPIDEVEF---QRPSPKRIQAFQRVLEQRGVAVSVR 325 (345)
T ss_pred EEEEEEEEECCcCCCHHHHHHHHHHHhcCC---CeEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 5 555566677899999999999999985 3789999999887665 3567777666666655433333333
No 130
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.52 E-value=1.5e-12 Score=117.72 Aligned_cols=186 Identities=13% Similarity=0.116 Sum_probs=132.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|.+||.+|.||....... . .. . .+.+++.+.++.+.. .|++.|.|+||+ |+...+ +.++++.+++.
T Consensus 119 ~T~gCn~~C~yC~~~~~~~-~-~~-~-~~~~~~~~~i~~i~~~~~i~eV~lsGGD------PLl~~d~~L~~ll~~L~~i 188 (331)
T TIGR00238 119 VKGGCAVNCRYCFRRHFPY-K-EN-P-GNKKKWQKALDYIAEHPEIIEILISGGD------PLMAKDHELEWLLKRLEEI 188 (331)
T ss_pred eCCCCCCCCcCCCCCCcCC-C-CC-C-ccHHHHHHHHHHHHhCCCcCEEEEECCc------cccCCHHHHHHHHHHHHhc
Confidence 7999999999998643211 1 11 1 236788888877765 478999998754 443333 66677766653
Q ss_pred ----CceEEE-eCC----CCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-
Q 020848 106 ----GMEVCC-TLG----MLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGI- 174 (320)
Q Consensus 106 ----~~~i~~-~~g----~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i- 174 (320)
++.+.+ +++ .++++.++.|+++|+..+.++.... +++ .+...++++.++++|+.+....+
T Consensus 189 ~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei---------~~~~~~ai~~L~~aGi~v~~qtvL 259 (331)
T TIGR00238 189 PHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEI---------TEEFAEAMKKLRTVNVTLLNQSVL 259 (331)
T ss_pred CCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhC---------CHHHHHHHHHHHHcCCEEEeecce
Confidence 344433 223 2699999999999998888886665 443 25678999999999998655544
Q ss_pred -EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 175 -IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 175 -~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
-|..++.+++.++.+.+.++| +....++.+.|.+|+. .-..+.++..+++..+|..++.
T Consensus 260 l~gvnD~~~~l~~L~~~l~~~g--V~pyyl~~~~~~~g~~---~f~~~~~~~~~i~~~l~~~~sG 319 (331)
T TIGR00238 260 LRGVNDRAQILAKLSIALFKVG--IIPYYLHYLDKVQGAK---HFLVPDAEAAQIVKELARLTSG 319 (331)
T ss_pred ECCcCCCHHHHHHHHHHHhhcC--eecCeecCcCCCCCcc---cccCCHHHHHHHHHHHHhcCCC
Confidence 455678888999999999998 5567778888888862 2357788888888888877665
No 131
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=6.5e-12 Score=113.66 Aligned_cols=199 Identities=16% Similarity=0.284 Sum_probs=138.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH----cCCCEEEEecccCCCCCCc-hhHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE----AGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~----~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k 103 (320)
.+.||+++|.||..... +. .+.++.+||++.+..+.. .++..|+|.|- ||| ..++.+.++++.++
T Consensus 105 sq~GC~l~C~FC~t~~~---G~--~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGm-----GEPL~N~d~v~~~l~~l~ 174 (348)
T PRK14467 105 SQVGCAVGCKFCATAKD---GL--IRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGM-----GEPLANYENVRKAVQIMT 174 (348)
T ss_pred cCCCCCCcCcCCCCCCC---CC--cCCCCHHHHHHHHHHHHHHhccCCCCeEEEEcc-----ChhhcCHHHHHHHHHHHc
Confidence 78999999999976531 21 244899999999876554 24678888762 566 46799999999998
Q ss_pred h-cCc-----eEE-EeCCCCCHHHHHHHHHh----ccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCC
Q 020848 104 D-MGM-----EVC-CTLGMLEKHQAIELKKA----GLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGI 167 (320)
Q Consensus 104 ~-~~~-----~i~-~~~g~l~~e~l~~L~~a----Gld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~-~~Gi 167 (320)
+ .|+ .+. .|+|.. ..++++... .++ +.+|+.+. ++.++++.+. .+++..+++++... +.|.
T Consensus 175 ~~~gl~~~~r~itvsT~G~~--~~i~~l~~~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~ 251 (348)
T PRK14467 175 SPWGLDLSKRRITISTSGII--HQIKRMAEDPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR 251 (348)
T ss_pred ChhccCcCCCcEEEECCCCh--hHHHHHHhhccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC
Confidence 4 565 443 456765 334455442 343 44899999 9999999874 36777777777544 5566
Q ss_pred ee--eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 168 NV--CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 168 ~v--~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
++ ..-++-|.+++.+++.++.++++.++ ...+|.+.+|.|.++.++ ++++.+++.+....++..--...+|-+
T Consensus 252 ~V~ieyvLIpGvNDs~e~a~~La~~l~~l~-~~~~VnLIPynp~~~~~~---~~ps~e~i~~f~~~L~~~gi~v~vR~~ 326 (348)
T PRK14467 252 RIMLEYVLIKGVNDSPEDALRLAQLIGKNK-KKFKVNLIPFNPDPELPY---ERPELERVYKFQKILWDNGISTFVRWS 326 (348)
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHhcCC-CceEEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 64 44555566889999999999999884 246788899998887765 557777766666655554334444543
No 132
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.49 E-value=1.1e-12 Score=118.14 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=130.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|.+||.+|.||...... . .. ..++.+++.+.++.+.. .+++.|.|+||+ |+...+ +.+++..++..
T Consensus 102 ~t~~Cn~~Cr~C~~~~~~--~-~~-~~~~~~~~~~~i~~i~~~~~i~~VvltGGE------PL~~~d~~L~~ll~~l~~i 171 (321)
T TIGR03821 102 VTGGCAINCRYCFRRHFP--Y-QE-NQPNKAQWKEALEYIAQHPEINEVILSGGD------PLMAKDHRLDWLLNLLEQI 171 (321)
T ss_pred eCCCcCCcCcCCCCCCcC--C-CC-CCCCHHHHHHHHHHHHhcCCCCEEEEeCcc------cccCCchHHHHHHHHHHhC
Confidence 799999999999764321 1 11 12566777777776665 489999998753 433222 44555444322
Q ss_pred ------CceE---EEeCCCCCHHHHHHHHHhccCeec-cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 106 ------GMEV---CCTLGMLEKHQAIELKKAGLTAYN-HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 106 ------~~~i---~~~~g~l~~e~l~~L~~aGld~v~-i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
++.. .+.+..++++.++.|+++|...+. +++++.++++ +...++++.++++|+.+....++
T Consensus 172 ~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei~---------d~~~~ai~~L~~~Gi~v~~qtvl 242 (321)
T TIGR03821 172 PHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEID---------AEVADALAKLRNAGITLLNQSVL 242 (321)
T ss_pred CCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhCc---------HHHHHHHHHHHHcCCEEEeccee
Confidence 2221 122235789999999999987774 5887765443 34678999999999987666555
Q ss_pred --EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 176 --GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 176 --Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
|.+++.+++.++.+.+.++| +....++.+.|.+|+.- -..+.++..+++..++..++.
T Consensus 243 lkgiNDn~~~l~~L~~~l~~~g--v~pyyl~~~~p~gg~~~---f~v~~~~~~~i~~~l~~~~sG 302 (321)
T TIGR03821 243 LRGVNDNADTLAALSERLFDAG--VLPYYLHLLDKVQGAAH---FDVDDERARALMAELLARLPG 302 (321)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC--CeeCcccccCCCCCccc---ccCCHHHHHHHHHHHHHhCCC
Confidence 44689999999999999998 66677888888887542 357788888888888777664
No 133
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.47 E-value=1e-11 Score=114.08 Aligned_cols=187 Identities=13% Similarity=0.172 Sum_probs=133.9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHH--HHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQ--ILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~--l~~~i~~~k~~ 105 (320)
.|+.|+..|.||...... + .....++.+++.+.++.+.+. +++.|.|+||+ |+.+++ +..+++.++++
T Consensus 114 vT~~C~~~CryC~R~~~~--g-~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD------PLll~d~~L~~iL~~L~~I 184 (417)
T TIGR03820 114 VSNTCAMYCRHCTRKRKV--G-DRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD------PLLLSDDYLDWILTELRAI 184 (417)
T ss_pred EcCCcCCCCcCCCCcccC--C-cccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc------cccCChHHHHHHHHHHhhc
Confidence 699999999999765421 1 122347899999999988874 89999998864 433322 33334555543
Q ss_pred -Cce---EEEe-----CCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee--EE
Q 020848 106 -GME---VCCT-----LGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSG--GI 174 (320)
Q Consensus 106 -~~~---i~~~-----~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~--~i 174 (320)
+++ +.++ +..++++.++.|++.+..+|.++++..+++ .++..++++.++++|+.+... ++
T Consensus 185 phV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Ei---------t~~a~~Al~~L~~aGI~l~nQsVLL 255 (417)
T TIGR03820 185 PHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREI---------TASSKKALAKLADAGIPLGNQSVLL 255 (417)
T ss_pred CCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhC---------hHHHHHHHHHHHHcCCEEEeeceEE
Confidence 333 3222 335789999999999987888888776443 577899999999999986544 44
Q ss_pred EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 020848 175 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 175 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
-|.+++.+-+.++.+.+.++++ .-..++..-+.+|+.-. ..+.++.+++++.+|..++.
T Consensus 256 kGVND~~~~l~~L~~~L~~~gV--~PYYl~~~d~v~G~~hF---rv~~~~g~~I~~~lr~~~sG 314 (417)
T TIGR03820 256 AGVNDCPRIMKKLVHKLVANRV--RPYYLYQCDLSEGLSHF---RTPVGKGIEIIESLIGHTSG 314 (417)
T ss_pred CCcCCCHHHHHHHHHHHHHCCC--eeceeeeccCCCCcccc---cCcHHHHHHHHHHHHHhCCC
Confidence 4667898999999999999984 33455566667776432 46688888999888887764
No 134
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.47 E-value=2.3e-11 Score=110.18 Aligned_cols=196 Identities=17% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
...||+++|.||+.... +. .+.++.+||++.+...... .+..+++.|| |||+ .++.+.++++.+++
T Consensus 107 sqvGC~~~C~FC~tg~~---G~--~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mgg-----GEPLln~d~v~~~l~~l~~ 176 (342)
T PRK14454 107 TQVGCRMGCKFCASTIG---GM--VRNLTAGEMLDQILAAQNDIGERISNIVLMGS-----GEPLDNYENVMKFLKIVNS 176 (342)
T ss_pred cCCCCCCcCCcCCCCCC---CC--cccCCHHHHHHHHHHHHHHhcCCCCCEEEECC-----chhhcCHHHHHHHHHHHhc
Confidence 68999999999976421 21 2348999999999866542 2445444332 5674 56789999999995
Q ss_pred -cCc-----eEE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHH-HHHcCCee--
Q 020848 105 -MGM-----EVC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKH-VREAGINV-- 169 (320)
Q Consensus 105 -~~~-----~i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~-a~~~Gi~v-- 169 (320)
.|+ .+. -|+|... .+.+|.+.++ ..+.+++.+. ++.++++.+. ...++.+++++. ..+.|.++
T Consensus 177 ~~gi~~~~r~itvsTsG~~p--~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~i 254 (342)
T PRK14454 177 PYGLNIGQRHITLSTCGIVP--KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITF 254 (342)
T ss_pred ccccCcCCCceEEECcCChh--HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEE
Confidence 566 443 3567653 3677777643 3478899999 8999998873 256677766655 55666664
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceee
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVR 242 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~ 242 (320)
..-+|-|.+++.+++.++.++++.+. ..|.+.+|.|.++..+ .+++.+++.+....++...-...++
T Consensus 255 ey~LI~gvNDs~eda~~La~llk~l~---~~VnLiPyn~~~~~~~---~~ps~e~l~~f~~~l~~~gi~v~iR 321 (342)
T PRK14454 255 EYALVKGVNDSKEDAKELGKLLKGML---CHVNLIPVNEVKENGF---KKSSKEKIKKFKNILKKNGIETTIR 321 (342)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEEecCCCCCCCC---CCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 45556677899999999999999874 4788899988877654 4567777666666665543344444
No 135
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.45 E-value=2e-11 Score=103.29 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHHc---CCCEEEEecccCCCCCCchhH-HHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEA---GSTRFCMGAAWRDTIGRKTNF-NQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~---g~~~i~l~~g~~~~~ge~~~~-~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld 130 (320)
+++|++++.+.....+ +...|+++| |||+.. +.+.++++.+|+.|+.+ ..|+|..+.+.++.|... +|
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SG------GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~-~D 91 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSG------GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKL-CD 91 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeC------chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHh-cC
Confidence 8999999998765432 334677765 567554 45789999999889884 568999999999999876 99
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+++.+. ++.|+.+. +.+.+.++++++.+.+.|.+ +.+.+|-|+.++.+++.++.+++.+++ ++.+.+.+|.
T Consensus 92 ~~l~DiK~~d~~~~~~~t-G~~~~~il~nl~~l~~~g~~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~--~~~~~llpyh 168 (213)
T PRK10076 92 EVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENMQQALDVLIPLG--IKQIHLLPFH 168 (213)
T ss_pred EEEEeeccCCHHHHHHHH-CCCHHHHHHHHHHHHhCCCcEEEEEEEECCCCCCHHHHHHHHHHHHHcC--CceEEEecCC
Confidence 999999999 89998885 56789999999999999877 556667777789999999999999986 6688888988
Q ss_pred ecCC---------CCCCCCCCCCHHHHHHHHHHHHH
Q 020848 208 AVKG---------TPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 208 p~~g---------t~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
|..- -++.+.++++.+++.+...+++.
T Consensus 169 ~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~ 204 (213)
T PRK10076 169 QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213)
T ss_pred ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHH
Confidence 8642 23445567777776666655553
No 136
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.44 E-value=3.7e-11 Score=108.82 Aligned_cols=203 Identities=16% Similarity=0.231 Sum_probs=137.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC--CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG--STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g--~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~- 105 (320)
...||+++|.||..... + ..+.++.+||++.+..+...| ++.|.|.|- |||+...++.++++.+++.
T Consensus 106 sqvGC~~~C~FC~tg~~---g--~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGm-----GEPLln~~v~~~i~~l~~~~ 175 (347)
T PRK14453 106 SQCGCGFGCRFCATGSI---G--LKRNLTADEITDQLLYFYLNGHRLDSISFMGM-----GEALANPELFDALKILTDPN 175 (347)
T ss_pred cCCCcCCCCCCCCCCCC---C--CcccCCHHHHHHHHHHHHhcCCCcceEEEeec-----CCccCCHHHHHHHHHHhccc
Confidence 67899999999987631 2 234489999999998766554 788888762 5776667899999888742
Q ss_pred --Cce---E-EEeCCCCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCCe--eee
Q 020848 106 --GME---V-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGIN--VCS 171 (320)
Q Consensus 106 --~~~---i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi~--v~~ 171 (320)
++. + ..|+|... .++.|.+.. --.+.+|+.+. ++.++++.+. ...++.+++++.... .|.+ +..
T Consensus 176 ~~~~~~r~itVsT~G~~~--~i~~l~~~~~~v~LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~~V~iry 253 (347)
T PRK14453 176 LFGLSQRRITISTIGIIP--GIQRLTQEFPQVNLTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGRKVYIAY 253 (347)
T ss_pred ccCCCCCcEEEECCCCch--hHHHHHhhccCcCEEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCCcEEEEE
Confidence 332 3 35677653 233333321 12345589998 8888877763 367777777776444 5655 445
Q ss_pred eEEEEeCCCHHHHHHHHHHHhcCCC--CCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 172 GGIIGLGEAEEDRVGLLHTLATLPT--HPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 172 ~~i~Glget~ed~~~~l~~l~~l~~--~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
-+|-|.+++.+++.+++++++.++. .+..|.+.+|.|.++.+. +..+++.+++.++...++..-=...+|-+
T Consensus 254 ~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~-~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~ 327 (347)
T PRK14453 254 IMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPF-KFQSSSAGQIKQFCSTLKSAGISVTVRTQ 327 (347)
T ss_pred EeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCc-cCCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 5566778999999999999998731 146799999999877532 34567788877777766654333444443
No 137
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=99.44 E-value=3.9e-12 Score=107.42 Aligned_cols=192 Identities=20% Similarity=0.335 Sum_probs=142.3
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 107 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~ 107 (320)
+.+.-|-..|.||+.....++ ..+++-|-.+.++++..-|+..|+|++-+++... +..-..|.+.++++|....
T Consensus 116 lmGDTCTRGCRFCsVKTsR~P-----pPlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlp-DgGa~HiAkTVq~iK~k~p 189 (360)
T KOG2672|consen 116 LMGDTCTRGCRFCSVKTSRNP-----PPLDPNEPENTAEAIASWGLDYIVLTSVDRDDLP-DGGANHIAKTVQKIKEKAP 189 (360)
T ss_pred eecCccccCcceeeeecCCCC-----cCCCCCCcccHHHHHHHcCCCeEEEEecccccCc-CcchHHHHHHHHHHHhhCc
Confidence 369999999999998653221 1155556667777788899999999887766543 2355778899999985443
Q ss_pred eE---EEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHHc--CCeeeeeEEEEeCCC
Q 020848 108 EV---CCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVREA--GINVCSGGIIGLGEA 180 (320)
Q Consensus 108 ~i---~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glget 180 (320)
++ +.++.. -+.+.++.+...|+|.+.+.+||.+++-..++- ..+|.+-+..++.+++. ++-..+.+|.|+||+
T Consensus 190 ~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMlglget 269 (360)
T KOG2672|consen 190 EILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLGET 269 (360)
T ss_pred ccchhhcCccccCchHHHHHHHhcCccceecchhhHHhcchhhcCcccchHHhHHHHHHHHhhCCCceehhhhhhccCCC
Confidence 32 223332 457789999999999999999999887777664 45899999999999985 444678899999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHH
Q 020848 181 EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIR 227 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~ 227 (320)
++++..+++.++..+ ++-+.+..|++-..-.+......+++.+..
T Consensus 270 deei~~tl~dLr~~~--vdv~t~gqym~ptkrhl~v~eyvtpekf~~ 314 (360)
T KOG2672|consen 270 DEEIKQTLKDLRAAD--VDVVTFGQYMQPTKRHLKVKEYVTPEKFDY 314 (360)
T ss_pred HHHHHHHHHHHHHcC--CcEEecccccCCccccceeEEeeCHHHHHH
Confidence 999999999999998 778888888764333333333455554333
No 138
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.42 E-value=1.1e-10 Score=106.41 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=131.6
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc----------CCCEEEEecccCCCCCCch-hHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA----------GSTRFCMGAAWRDTIGRKT-NFNQILE 97 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~----------g~~~i~l~~g~~~~~ge~~-~~~~l~~ 97 (320)
+.-||+.+|.||..... +. .+.++.+||++.+..+... +++.|++.|+ |||+ .++.+.+
T Consensus 109 sQvGC~~~C~FC~t~~~---g~--~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGm-----GEPL~N~d~v~~ 178 (372)
T PRK11194 109 SQVGCALECKFCSTAQQ---GF--NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGM-----GEPLLNLNNVVP 178 (372)
T ss_pred cCCCCCCcCCCCCCCCC---CC--CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecC-----CccccCHHHHHH
Confidence 56899999999976531 22 2348999999998655432 2667777654 5674 4788899
Q ss_pred HHHHhh-hcC--c---eEEE-eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHH-HHc
Q 020848 98 YVKDIR-DMG--M---EVCC-TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT---RSYDERLETLKHV-REA 165 (320)
Q Consensus 98 ~i~~~k-~~~--~---~i~~-~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a-~~~ 165 (320)
+++.++ ..| + .+.+ |.|.. ..+++|.+..--.+.+++.+. ++.++.+.+. ...++.+++++.. .+.
T Consensus 179 al~~l~~~~g~~i~~r~itVsTsG~~--~~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~ 256 (372)
T PRK11194 179 AMEIMLDDFGFGLSKRRVTLSTSGVV--PALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKS 256 (372)
T ss_pred HHHHHhhhhccCcCCCeEEEECCCCc--hHHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhc
Confidence 999888 344 3 4443 56744 356777665322456789998 8999999874 3567777776653 344
Q ss_pred C-----CeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHH
Q 020848 166 G-----INVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARI 234 (320)
Q Consensus 166 G-----i~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~ 234 (320)
| +.+..-+|-|.+++.+++.++.++++.++ ..|.+.+|.|+++.++ ++++.+++.++...++.
T Consensus 257 ~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~l~---~~VnLIPYN~~~~~~~---~~ps~e~v~~f~~~L~~ 324 (372)
T PRK11194 257 NANQGRVTVEYVMLDHVNDGTEHAHQLAELLKDTP---CKINLIPWNPFPGAPY---GRSSNSRIDRFSKVLME 324 (372)
T ss_pred ccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhcCC---ceEEEecCCCCCCCCC---CCCCHHHHHHHHHHHHH
Confidence 3 34666677788999999999999999985 3889999999887665 45667776666555554
No 139
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.38 E-value=9.4e-11 Score=105.47 Aligned_cols=197 Identities=15% Similarity=0.226 Sum_probs=137.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCc-hhHHHHHHHHHHhhhc-
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRK-TNFNQILEYVKDIRDM- 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~k~~- 105 (320)
+..+|+.+|.||..... +. .+.++.+||++.+..+.+. .++.|+|.|- ||| ..++.+++.++.+.+.
T Consensus 102 sQvGC~~~C~FC~tg~~---g~--~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGm-----GEPl~N~d~vl~ai~~l~~~~ 171 (344)
T PRK14464 102 TQVGCAVGCVFCMTGRS---GL--LRQLGSAEIVAQVVLARRRRAVKKVVFMGM-----GEPAHNLDNVLEAIDLLGTEG 171 (344)
T ss_pred ccCCcCCCCCcCcCCCC---CC--CCCCCHHHHHHHHHHHHhcCCCCEEEEecc-----CcccCCHHHHHHHHHHhhchh
Confidence 78999999999976532 22 2347999999999877664 5889988763 455 3568888888887632
Q ss_pred --Cce-EE-EeCCCCCHHHHHHHHHhcc-CeeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHH-HcCCeee--eeE
Q 020848 106 --GME-VC-CTLGMLEKHQAIELKKAGL-TAYNHNLDTS-REFYSKIITT---RSYDERLETLKHVR-EAGINVC--SGG 173 (320)
Q Consensus 106 --~~~-i~-~~~g~l~~e~l~~L~~aGl-d~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~-~~Gi~v~--~~~ 173 (320)
+.. +. .+.|. .+.+++|.+.++ ..+.+|+++. ++.++.+.+. .+.++.+++++... ..|.++. ..+
T Consensus 172 ~i~~r~itiST~G~--~~~i~rL~~~~v~~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~grri~~EyvL 249 (344)
T PRK14464 172 GIGHKNLVFSTVGD--PRVFERLPQQRVKPALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGYPIQYQWTL 249 (344)
T ss_pred cCCCceEEEecccC--chHHHHHHHhcCChHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCCEEEEEEEE
Confidence 222 32 33453 345677776544 3566799999 8999998874 37888888888754 4565544 334
Q ss_pred EEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec
Q 020848 174 IIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL 243 (320)
Q Consensus 174 i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~ 243 (320)
+=|.+++.+++.++.++++.+. -+|.+.+|.|++|..+. .++.+++.++.+..+..--...+|-
T Consensus 250 l~GVNDs~e~a~~L~~~l~~~~---~~vNLIPyN~v~g~~~~---rp~~~~i~~f~~~L~~~gi~~tiR~ 313 (344)
T PRK14464 250 LEGVNDSDEEMDGIVRLLKGKY---AVMNLIPYNSVDGDAYR---RPSGERIVAMARYLHRRGVLTKVRN 313 (344)
T ss_pred eCCCCCCHHHHHHHHHHHhccc---cccceecCCccCCCCcc---CCCHHHHHHHHHHHHHCCceEEEEC
Confidence 4466899999999999999874 47889999999988654 4556766666665654332333443
No 140
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.37 E-value=2.7e-10 Score=102.67 Aligned_cols=197 Identities=13% Similarity=0.164 Sum_probs=138.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH---cCCCEEEEecccCCCCCCch-hHHHHHHHHHHhhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE---AGSTRFCMGAAWRDTIGRKT-NFNQILEYVKDIRD 104 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~---~g~~~i~l~~g~~~~~ge~~-~~~~l~~~i~~~k~ 104 (320)
...||+++|.||.-... +.. +.++..||++.+..+.. ..+..|+|-| .|||+ .++.+.+.++.+++
T Consensus 111 sQvGC~m~C~FC~tg~~---g~~--rnlta~EI~~qv~~~~~~~~~~~~niVFmG-----mGEPL~N~d~V~~~~~~l~~ 180 (342)
T PRK14465 111 SQIGCTLNCKFCATAKL---EFQ--GNLKAHEIVDQVLQVEKIVGDRATNVVFMG-----MGEPMHNYFNVIRAASILHD 180 (342)
T ss_pred ecCCCCCCCCCCcCCCC---Ccc--CCCCHHHHHHHHHHHHHhcCCCceEEEEEc-----CCcchhhHHHHHHHHHHHhC
Confidence 67899999999976531 222 34789999988876654 3467777765 25674 56899999998874
Q ss_pred c---Cc---eE-EEeCCCCCHHHHHHHHHhc-cCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHH-HcCCeee-
Q 020848 105 M---GM---EV-CCTLGMLEKHQAIELKKAG-LTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVR-EAGINVC- 170 (320)
Q Consensus 105 ~---~~---~i-~~~~g~l~~e~l~~L~~aG-ld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~-~~Gi~v~- 170 (320)
. ++ .+ ..|+|.+ ..+.+|.+.. --.+.+|+++. ++.+.++.+ ..++++.+++++... +.|-++.
T Consensus 181 ~~~~~~~~r~itvST~G~~--~~i~~l~~~~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~i 258 (342)
T PRK14465 181 PDAFNLGAKRITISTSGVV--NGIRRFIENKEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITF 258 (342)
T ss_pred hhhhcCCCCeEEEeCCCch--HHHHHHHhhccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 2 22 34 3567866 4556665432 24788999999 899999875 457899999999654 5666655
Q ss_pred -eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 171 -SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 171 -~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
.-++-|.+++.+++.++.++++.++ ..+.+.+|.|. + .+.++++.+++.+.....+...-...+|-+
T Consensus 259 eyvLI~GvNDs~eda~~L~~ll~~l~---~kVnLIPyN~~-~---~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~ 326 (342)
T PRK14465 259 EYVMIPGVNMGRENANKLVKIARSLD---CKINVIPLNTE-F---FGWRRPTDDEVAEFIMLLEPAGVPILNRRS 326 (342)
T ss_pred EEEEECCccCCHHHHHHHHHHHhhCC---CcEEEEccCCC-C---CCCCCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 4445566899999999999999986 35778888773 3 355678888877766666544333444444
No 141
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.36 E-value=1e-10 Score=101.11 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=96.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCC-CCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTG-VKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
+-+.+||++|.||......... ......++.+++++.+..+...+++.|.|+| |||+.++++.++++.+++.|
T Consensus 27 vR~~gCNlrC~~Cdt~~~~~~~~~~~~~~~s~~ei~~~i~~~~~~~~~~V~lTG------GEPll~~~l~~li~~l~~~g 100 (238)
T TIGR03365 27 VRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSLSG------GNPALQKPLGELIDLGKAKG 100 (238)
T ss_pred EEeCCcCCcCcCCCCccccCcccCCccccCCHHHHHHHHHHHhCCCCCeEEEeC------CchhhhHhHHHHHHHHHHCC
Confidence 4688999999999765322111 1123348999999999877666788898876 57888889999999999888
Q ss_pred ceE-EEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 107 MEV-CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 107 ~~i-~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
+.+ ..|||.+..+. |++ +|.+.++++.... .....|+...++++.+.+ +..+.+.++++
T Consensus 101 ~~v~leTNGtl~~~~---l~~--~d~v~vs~K~~~s-----g~~~~~~~~~~~ik~l~~-~~~~~vK~Vv~ 160 (238)
T TIGR03365 101 YRFALETQGSVWQDW---FRD--LDDLTLSPKPPSS-----GMETDWQALDDCIERLDD-GPQTSLKVVVF 160 (238)
T ss_pred CCEEEECCCCCcHHH---Hhh--CCEEEEeCCCCCC-----CCCCcHHHHHHHHHHhhh-cCceEEEEEEC
Confidence 885 56889876652 333 5688888876511 112358888888888887 66788888886
No 142
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=99.34 E-value=2.6e-11 Score=105.12 Aligned_cols=162 Identities=20% Similarity=0.326 Sum_probs=114.9
Q ss_pred cccCCCCCCCCCCCCCCCCC-CCC---CCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-hhHHHHHHHHHHh
Q 020848 28 IKTGGCSEDCSYCPQSSRYD-TGV---KGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-TNFNQILEYVKDI 102 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~-~~~---~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-~~~~~l~~~i~~~ 102 (320)
..|+.||.+|.||+.+.... .+. ...+..+.++|.+++....+.|+ -++ +|+| .-++...+.++.+
T Consensus 33 FvTG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Ga---siT------GGdPl~~ieR~~~~ir~L 103 (353)
T COG2108 33 FVTGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGA---SIT------GGDPLLEIERTVEYIRLL 103 (353)
T ss_pred EEecccCCCcccCcCCHHhcCCcceeecccccCcHHHHHHHHHHhccccc---ccc------CCChHHHHHHHHHHHHHH
Confidence 37999999999998875321 111 12344678888888876555444 333 4567 4568899999999
Q ss_pred hh-cC--ceE--EEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 103 RD-MG--MEV--CCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 103 k~-~~--~~i--~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
|+ .| +.+ .+|.-..+++.++.|.+||+|.|.+... . -.....+.+++.++.|++.|+.+++-+.. .
T Consensus 104 K~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~-~-------~~~~~~e~~i~~l~~A~~~g~dvG~EiPa-i 174 (353)
T COG2108 104 KDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP-R-------PGSKSSEKYIENLKIAKKYGMDVGVEIPA-I 174 (353)
T ss_pred HHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC-C-------ccccccHHHHHHHHHHHHhCccceeecCC-C
Confidence 84 33 333 3444458999999999999999988653 1 01235678899999999999998887655 4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 178 GEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 178 get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
..-++.+.+.++++.+.+ .+.+.++.+--.
T Consensus 175 pg~e~~i~e~~~~~~~~~--~~FlNiNELE~s 204 (353)
T COG2108 175 PGEEEAILEFAKALDENG--LDFLNINELEFS 204 (353)
T ss_pred cchHHHHHHHHHHHHhcc--cceeeeeeeeec
Confidence 334567889999999987 678888776543
No 143
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=99.33 E-value=3.1e-11 Score=103.17 Aligned_cols=194 Identities=14% Similarity=0.180 Sum_probs=136.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcC
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMG 106 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~ 106 (320)
.||.|-++|.||-..... +.++.. +++|||+..--.... .-+..+++.+|.--. + +..++.+++.++.++ +.+
T Consensus 60 lTN~CiyDC~YCINr~s~--~~pra~-ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~-~-DyTmE~mi~var~LRle~~ 134 (404)
T COG4277 60 LTNFCIYDCAYCINRSSN--DTPRAR-FTPEEIVDLTLNFYRRNYIEGLFLSSGVIKN-P-DYTMEEMIEVARILRLEHK 134 (404)
T ss_pred HhhhHHHhhHHHhccccC--CCcccc-cCHHHHHHHHHHHHHHhhhhhheeccccccC-c-chHHHHHHHHHHHHhhccc
Confidence 699999999999775432 445555 899999988765544 557888887764221 2 356788888888887 444
Q ss_pred ce----EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-------C--------
Q 020848 107 ME----VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA-------G-------- 166 (320)
Q Consensus 107 ~~----i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~-------G-------- 166 (320)
+. .-+-+| .+.+.++++-.. +|++++.+|.. ++-++.+.+.+++.++++.+.+.+.. +
T Consensus 135 f~GYIHlK~IPg-as~~li~eagly-adRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~ 212 (404)
T COG4277 135 FRGYIHLKIIPG-ASPDLIKEAGLY-ADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPE 212 (404)
T ss_pred cCcEEEEEecCC-CCHHHHHHHhhh-hheeEEeEecCCcchhhhhCCCCChHHHHHHHHHHHHHHhhcccchhhhccCcc
Confidence 43 222233 445555544333 69999999999 89999999999888888888776641 0
Q ss_pred C-e--eeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHH
Q 020848 167 I-N--VCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 167 i-~--v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a 230 (320)
+ + -.+.+|+|- +++++++......+..-. ....|.+..|.|++++|+.....++.-...++++
T Consensus 213 fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y-~lkRVyySaf~Pv~~s~~lp~~~pplmRehRLYQ 279 (404)
T COG4277 213 FAPAGQSTQMIVGADGETDEDILSRSENLYGRY-SLKRVYYSAFSPVPSSPLLPDDKPPLMREHRLYQ 279 (404)
T ss_pred ccCCCCceEEEEecCCCchHHHHHHHHHHhhcc-ceeEEEeecccccCCCCCCcccCCchhHHHHHHH
Confidence 1 1 246799999 999999999888876543 2789999999999999876543333333344444
No 144
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.31 E-value=1e-09 Score=98.89 Aligned_cols=201 Identities=15% Similarity=0.221 Sum_probs=139.8
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-----------------CCCEEEEecccCCCCCCc-h
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-----------------GSTRFCMGAAWRDTIGRK-T 90 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-----------------g~~~i~l~~g~~~~~ge~-~ 90 (320)
..-||++.|.||+-... +. .+.++..||++.+..+.+. .++.|+|-| .||| .
T Consensus 113 SQvGC~mgC~FCaTG~~---G~--~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMG-----MGEPL~ 182 (371)
T PRK14461 113 TQAGCGMGCVFCATGTL---GL--LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMG-----MGEPFA 182 (371)
T ss_pred ccCCccCCCCcccCCCC---Cc--ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEc-----cCCchh
Confidence 67899999999976532 22 2448999999998765431 256777754 2677 4
Q ss_pred hHHHHHHHHHHhhh-c--Cc---eEE-EeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCC---CCCHHHHHHH
Q 020848 91 NFNQILEYVKDIRD-M--GM---EVC-CTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIIT---TRSYDERLET 158 (320)
Q Consensus 91 ~~~~l~~~i~~~k~-~--~~---~i~-~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~---~~~~~~~l~~ 158 (320)
.++.+++.++.+.+ . ++ .+. .|.|. ...+++|.+.++. .+.+|+.+. +++++++.+ ..+.++.+++
T Consensus 183 NydnV~~ai~il~d~~g~~is~R~ITVST~Gi--vp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a 260 (371)
T PRK14461 183 NYDRWWQAVERLHDPQGFNLGARSMTVSTVGL--VKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAA 260 (371)
T ss_pred hHHHHHHHHHHhcCccccCcCCCceEEEeecc--hhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHH
Confidence 67899999999873 2 33 233 34564 4567777776543 577899999 899999888 3488999999
Q ss_pred HHHHHH-cCCee--eeeEEEEeCCCHHHHHHHHHHHhcCCCC---CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 159 LKHVRE-AGINV--CSGGIIGLGEAEEDRVGLLHTLATLPTH---PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 159 i~~a~~-~Gi~v--~~~~i~Glget~ed~~~~l~~l~~l~~~---~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
++...+ .|-++ ...++=|.+++.+|..++.++++.++.. .-+|.+.+|.|++|+++. +++.+++.+.....
T Consensus 261 ~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~---~ps~~~i~~F~~~L 337 (371)
T PRK14461 261 TRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLG---RSERERVTTFQRIL 337 (371)
T ss_pred HHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCC---CCCHHHHHHHHHHH
Confidence 988554 45444 4555667789999999999999987210 247999999999998765 35677766666655
Q ss_pred HHhCCCceeecC
Q 020848 233 RIVMPKAMVRLS 244 (320)
Q Consensus 233 R~~~p~~~i~~~ 244 (320)
+..--...+|.+
T Consensus 338 ~~~gi~vtiR~s 349 (371)
T PRK14461 338 TDYGIPCTVRVE 349 (371)
T ss_pred HHCCceEEEeCC
Confidence 543323344433
No 145
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.25 E-value=1.6e-10 Score=101.98 Aligned_cols=197 Identities=17% Similarity=0.249 Sum_probs=132.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhH-HHHHHHHHH
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNF-NQILEYVKD 101 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~-~~l~~~i~~ 101 (320)
++. ...+|-..|.||--.. .. + .....+.+++++.++...+.|+..|.+.+-.++.+|.. ..+ .-+.++++.
T Consensus 190 Ii~-intgclgaCtyckTkh-ar-g--~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~ 264 (547)
T KOG4355|consen 190 IIS-INTGCLGACTYCKTKH-AR-G--LLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEV 264 (547)
T ss_pred EEE-eccccccccccccccc-cc-c--ccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHh
Confidence 455 4779999999996532 11 2 12336899999999999999999999987655555532 112 223333333
Q ss_pred hhh-cCceEEEeCCCCCHHHHHHHHHh----cc-CeeccCcccc-HHHHhhhCCCC---CHHHHHHHHHHHHHcCCeeee
Q 020848 102 IRD-MGMEVCCTLGMLEKHQAIELKKA----GL-TAYNHNLDTS-REFYSKIITTR---SYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 102 ~k~-~~~~i~~~~g~l~~e~l~~L~~a----Gl-d~v~i~let~-~~~~~~i~~~~---~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
+-+ ..+.+-+||-..--+.+++.+.. .+ ..+++.+++. +.++-.|.+.. +++.+.+.+.. +--|+.+.+
T Consensus 265 iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~Lte-rVPgi~IAT 343 (547)
T KOG4355|consen 265 IPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTE-RVPGITIAT 343 (547)
T ss_pred cchhhhhhhcCCCCchHHHHHHHHHHHhcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHh-hCCCcEEee
Confidence 332 12333344443323333333222 11 2334578888 88988888754 45555544443 224889999
Q ss_pred eEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHH
Q 020848 172 GGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMI 229 (320)
Q Consensus 172 ~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~ 229 (320)
++|.|+ +||++|+.++++++++.. ..++.++.|.|.||||.+.....+..+..+..
T Consensus 344 DiIcgFPtETdeDFeeTmeLv~kYK--FPslfInQfyPRpGTPAAkmkki~a~~vkkRT 400 (547)
T KOG4355|consen 344 DIICGFPTETDEDFEETMELVRKYK--FPSLFINQFYPRPGTPAAKMKKIPAVEVKKRT 400 (547)
T ss_pred eeeecCCCCchHHHHHHHHHHHHcc--CchhhhhhcCCCCCChHHhhhcccHHHHHHHH
Confidence 999999 999999999999999997 77899999999999998887777666655443
No 146
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.25 E-value=2.5e-10 Score=90.06 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=115.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHH-HcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAK-EAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG 106 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~-~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~ 106 (320)
.-+-+||+.|.||..+...........+++++|+.+.+.++. ++|.+.+-++|+. +.. ..+.+++.|+-+-+..
T Consensus 46 AD~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~E-P~l----~~EHvlevIeLl~~~t 120 (228)
T COG5014 46 ADTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAE-PIL----GREHVLEVIELLVNNT 120 (228)
T ss_pred ccccccceeeHHhhhhhhcCCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCC-ccc----cHHHHHHHHHhccCce
Confidence 367899999999965432222334567799999999887664 4799999887753 222 3477888887764433
Q ss_pred ceEEEeCCC---CCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC
Q 020848 107 MEVCCTLGM---LEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEA 180 (320)
Q Consensus 107 ~~i~~~~g~---l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget 180 (320)
+ +.-|||. .+...+++|.+.---.|.+++.+. ++.|.+|... .-|...+++++.+++.|+.+...+++++- +
T Consensus 121 F-vlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f~-~ 198 (228)
T COG5014 121 F-VLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDFF-R 198 (228)
T ss_pred E-EEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCceeeehhhhccc-h
Confidence 3 4556776 378888888764333567899999 9999998752 24677899999999999998888888772 1
Q ss_pred HHHHHHHHHHHhcCCCCCCee
Q 020848 181 EEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 181 ~ed~~~~l~~l~~l~~~~~~v 201 (320)
++...++...+.+.++-+..+
T Consensus 199 Ed~~k~Lak~Lgehp~~P~~i 219 (228)
T COG5014 199 EDGLKELAKRLGEHPPIPCRI 219 (228)
T ss_pred hhhHHHHHHHhccCCCCCcce
Confidence 222344666666665333333
No 147
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=99.21 E-value=1.4e-09 Score=98.32 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=131.4
Q ss_pred EeecccCCCCCC----CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEec-------ccCCCCCC-c-hh
Q 020848 25 LLSIKTGGCSED----CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGA-------AWRDTIGR-K-TN 91 (320)
Q Consensus 25 ~l~~~t~~C~~~----C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~-------g~~~~~ge-~-~~ 91 (320)
=|. +..+|+.. |+||.-... + .....++|.++++++.+...|+++|-|+= +....+++ | ..
T Consensus 186 EiE-TyRGC~r~~~ggCSFCtEp~~---g--~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~Pn 259 (560)
T COG1031 186 EIE-TYRGCPRRVSGGCSFCTEPVR---G--RPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPN 259 (560)
T ss_pred EEe-eccCCcccccCCCccccCcCc---C--CcccCCHHHHHHHHHHHHHhccceeeeccccceeeecccccCCCCCCCC
Confidence 344 89999987 999976532 2 23447999999999999999999877641 11112221 1 23
Q ss_pred HHHHHHHHHHhhhc--CceE-E---EeCCCC------CHHHHHHHHHhcc--CeeccCcccc-HHHHhhhCCCCCHHHHH
Q 020848 92 FNQILEYVKDIRDM--GMEV-C---CTLGML------EKHQAIELKKAGL--TAYNHNLDTS-REFYSKIITTRSYDERL 156 (320)
Q Consensus 92 ~~~l~~~i~~~k~~--~~~i-~---~~~g~l------~~e~l~~L~~aGl--d~v~i~let~-~~~~~~i~~~~~~~~~l 156 (320)
-+.+.++.+-+++. ++.+ . +|++.+ +.+.++.+.+.|- |...+++||+ +.+.+.-+-..+.++++
T Consensus 260 PealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl 339 (560)
T COG1031 260 PEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVL 339 (560)
T ss_pred HHHHHHHHHHHHhhCCCCeeeeecCCCchhhhcChHHHHHHHHHHHhhCCCCceeeeeccccCHHHHhhccccCCHHHHH
Confidence 45566666666643 4442 2 233332 4556677777774 6788999999 88877766678999999
Q ss_pred HHHHHHHHcC-------Ce---eeeeEEEEe-CCCHHHHHHHHHHHhcC---CCCCCeeeeeeeeecCCCCCCCC
Q 020848 157 ETLKHVREAG-------IN---VCSGGIIGL-GEAEEDRVGLLHTLATL---PTHPESVPINALLAVKGTPLQDQ 217 (320)
Q Consensus 157 ~~i~~a~~~G-------i~---v~~~~i~Gl-get~ed~~~~l~~l~~l---~~~~~~v~~~~~~p~~gt~~~~~ 217 (320)
++++...+.| ++ -++++++|+ ||+.+.+.-..++|+++ |--+..|.+-...++|||++...
T Consensus 340 ~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~ 414 (560)
T COG1031 340 EAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWER 414 (560)
T ss_pred HHHHHHHHhcCccCcCCCccccccceeEecCCCccHHHHHhhHHHHHHHHhcCceEEEeeeeeEeecCCCchhhh
Confidence 9999988854 33 578999999 99999887776666654 22256788889999999998753
No 148
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=99.03 E-value=1.2e-07 Score=83.57 Aligned_cols=222 Identities=14% Similarity=0.170 Sum_probs=156.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceE--EEeCCCCCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEV--CCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i--~~~~g~l~~e~l~~L~~aGl 129 (320)
..++.++.++.++.+.+.|++.|-++++..+... | .+++..+.++.+++.+ ..+ .++++ .+.++.++++|+
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-p-~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~i~~a~~~g~ 88 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-P-QMEDDWEVLRAIRKLVPNVKLQALVRNR---EKGIERALEAGV 88 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-c-cCCCHHHHHHHHHhccCCcEEEEEccCc---hhhHHHHHhCCc
Confidence 3479999999999999999999999876543221 2 3456777777777543 443 34454 888999999999
Q ss_pred CeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC--CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+.+.+++.+.+ ....+.+++ ..++..++.++.+++.|+.+.+.+..-.+ .+.+++.+.++.+.++| ++.+.+.
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~i~l~ 166 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG--ADEISLK 166 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--CCEEEec
Confidence 99999987773 222223333 36889999999999999999888876567 99999999999999998 6665532
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
.| ....+++++.+++...+...++..+.+-. ...++.......++.+||..+- .|-+ ..++..+.
T Consensus 167 ------Dt----~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G-~~~Gn~~~ 235 (265)
T cd03174 167 ------DT----VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG-ERAGNAAT 235 (265)
T ss_pred ------hh----cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEecccccc-ccccCccH
Confidence 22 12367888889999888888763222211 0012222334678889998772 2211 23456789
Q ss_pred hHHHHHHHHcCCC
Q 020848 281 DADQLMFKVLGLT 293 (320)
Q Consensus 281 ~~~~~~i~~~G~~ 293 (320)
++++.+++..|+.
T Consensus 236 e~~~~~l~~~~~~ 248 (265)
T cd03174 236 EDLVAALEGLGID 248 (265)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999853
No 149
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=99.02 E-value=3.3e-08 Score=88.13 Aligned_cols=186 Identities=18% Similarity=0.320 Sum_probs=127.1
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH-cC------CCEEEEecccCCCCCCc-hhHHHHHHHHH
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKE-AG------STRFCMGAAWRDTIGRK-TNFNQILEYVK 100 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~-~g------~~~i~l~~g~~~~~ge~-~~~~~l~~~i~ 100 (320)
+.-||+..|.||+-... +. .+.++..||+..+..+.+ .| +..|++-| .||| ..++.+..+++
T Consensus 107 sQvGC~~~C~FCaTg~~---G~--~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MG-----MGEPl~N~dnV~~a~~ 176 (349)
T COG0820 107 SQVGCPVGCTFCATGQG---GL--NRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMG-----MGEPLLNLDNVVKALE 176 (349)
T ss_pred cCCCcCCCCCeeccccc---cc--eeccCHHHHHHHHHHHHHhcCccccceeeeEEEec-----CCchhhhHHHHHHHHH
Confidence 67799999999987542 22 234899999999987653 23 34465543 3667 56788999999
Q ss_pred Hhh-hcCce-----EE-EeCCCCCHHHHHHHHHhccC-eeccCcccc-HHHHhhhCCC---CCHHHHHHHHHHHHH-cCC
Q 020848 101 DIR-DMGME-----VC-CTLGMLEKHQAIELKKAGLT-AYNHNLDTS-REFYSKIITT---RSYDERLETLKHVRE-AGI 167 (320)
Q Consensus 101 ~~k-~~~~~-----i~-~~~g~l~~e~l~~L~~aGld-~v~i~let~-~~~~~~i~~~---~~~~~~l~~i~~a~~-~Gi 167 (320)
.+. ..|+. +. .|.|. ...+.+|.+..++ .+.+|+.+. +++.+.+.+. .+.+..+++++.-.+ .|.
T Consensus 177 i~~~~~G~~ls~R~iTvSTsGi--~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~ 254 (349)
T COG0820 177 IINDDEGLGLSKRRITVSTSGI--VPRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR 254 (349)
T ss_pred hhcCcccccccceEEEEecCCC--chhHHHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc
Confidence 887 33332 33 34553 3456666643332 567899999 8888887773 477888888888554 454
Q ss_pred eee--eeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHH
Q 020848 168 NVC--SGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATA 232 (320)
Q Consensus 168 ~v~--~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~ 232 (320)
+|. ..++=|.+++.++..++++++..+. -+|.+.+|.|++|+.+.. ++.+++.+.....
T Consensus 255 rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~---~~VNLIP~Np~~~~~y~r---~~~~~i~~F~~~L 315 (349)
T COG0820 255 RVTFEYVLLDGVNDSLEHAKELAKLLKGIP---CKVNLIPYNPVPGSDYER---SSKERIRKFLKIL 315 (349)
T ss_pred eEEEEeeecccccCCHHHHHHHHHHhcCCC---ceEEEeecCCCCCCCccC---CcHHHHHHHHHHH
Confidence 444 4455566788999999999998884 489999999999988543 4455544444433
No 150
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=98.99 E-value=1.1e-09 Score=86.78 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=65.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh---HHHHHHHHHHhhhc
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDM 105 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~k~~ 105 (320)
.+++||++|.||..+... .......++.+.+.+.++.+.+.++..|.++| |||+. .+.+.++++.+++.
T Consensus 11 ~t~~Cnl~C~yC~~~~~~--~~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~G------GEPll~~~~~~l~~i~~~~k~~ 82 (139)
T PF13353_consen 11 FTNGCNLRCKYCFNSEIW--KFKRGKELSEEIIEEIIEELKNYGIKGIVLTG------GEPLLHENYDELLEILKYIKEK 82 (139)
T ss_dssp EEC--SB--TT-TTCCCS---TT-SEEC-HHHHHHHCHHHCCCCCCEEEEEC------STGGGHHSHHHHHHHHHHHHHT
T ss_pred EcCcccccCcCcCCcccC--cccccccccchhhhhhhhHHhcCCceEEEEcC------CCeeeeccHhHHHHHHHHHHHh
Confidence 377899999999765422 11233336777777777777778899998886 46777 89999999999976
Q ss_pred Cc-e-EEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 106 GM-E-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 106 ~~-~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
+. . +..++|....+...++....++.+.++++..
T Consensus 83 ~~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~ 118 (139)
T PF13353_consen 83 FPKKIIILTNGYTLDELLDELIEELLDEIDVSVDGP 118 (139)
T ss_dssp T-SEEEEEETT--HHHHHHHHHHHHHHTESEEEE--
T ss_pred CCCCeEEEECCCchhHHHhHHHHhccCccEEEEEEe
Confidence 55 3 6788898777776655555566666666665
No 151
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=98.95 E-value=7.8e-08 Score=85.34 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=107.6
Q ss_pred EEEeecccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHH-HHHHHHHH-HHcCC--CEEEEecccCCCCCCc--hhHHHH
Q 020848 23 CTLLSIKTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDA-VMQAAQKA-KEAGS--TRFCMGAAWRDTIGRK--TNFNQI 95 (320)
Q Consensus 23 ~~~l~~~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~ee-i~~~~~~~-~~~g~--~~i~l~~g~~~~~ge~--~~~~~l 95 (320)
...+| .-.||.+.|.||........ ...... +..++ +++.++.- .+.+- ..|.+++.+ +++. | ..+.-.
T Consensus 30 ~y~in-py~GC~h~C~YCYa~~~~~~~~~~~~~-v~vk~n~~e~l~~el~~~~~k~~~i~is~~T-Dpyq-p~E~~~~lt 105 (297)
T COG1533 30 DYTLN-PYRGCSHGCIYCYARPMHGYLPKSPTK-VNVKENLLELLERELRKPGPKRTVIAISSVT-DPYQ-PIEKEYRLT 105 (297)
T ss_pred ceecC-CcCCCCCCCceeecccccccccCCCce-eeechhHHHHHHHHHhhccCCceEEEEecCC-CCCC-cchHHHHHH
Confidence 34556 56799999999966532111 111122 34444 77777543 32333 345555443 3332 2 122222
Q ss_pred HHHHHHhhhcCceEEEeCC-CC---CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCC-CCHHHHHHHHHHHHHcCCee
Q 020848 96 LEYVKDIRDMGMEVCCTLG-ML---EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITT-RSYDERLETLKHVREAGINV 169 (320)
Q Consensus 96 ~~~i~~~k~~~~~i~~~~g-~l---~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v 169 (320)
..+++.+.+.+.++.+.+. .+ +-+.+..++.-+.-.|.+++-|. +++.+.+-+. .+.++++++++.+.++|+++
T Consensus 106 R~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~ 185 (297)
T COG1533 106 RKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPV 185 (297)
T ss_pred HHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeE
Confidence 2233333355666543332 33 55666666666767788999888 6677777765 48999999999999999997
Q ss_pred eeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 170 CSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 170 ~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+---+ +.+++|+.+.+..+.+-+ +..+..
T Consensus 186 ~v~v~PIiP~~~d~e~e~~l~~~~~ag--~~~v~~ 218 (297)
T COG1533 186 GLFVAPIIPGLNDEELERILEAAAEAG--ARVVVY 218 (297)
T ss_pred EEEEecccCCCChHHHHHHHHHHHHcC--CCeeEe
Confidence 76663323 778899999999999887 444433
No 152
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.88 E-value=4.6e-08 Score=88.24 Aligned_cols=198 Identities=16% Similarity=0.145 Sum_probs=141.2
Q ss_pred cCCCCCC---CCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCC---EEEEecccCCCCCCchhHHHHHHHHHHhh
Q 020848 30 TGGCSED---CSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGST---RFCMGAAWRDTIGRKTNFNQILEYVKDIR 103 (320)
Q Consensus 30 t~~C~~~---C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~---~i~l~~g~~~~~ge~~~~~~l~~~i~~~k 103 (320)
...|... |.||...... ... ...++..+.+....-.-.+.. .+...+ .+.+.-++++.+.+++++
T Consensus 34 ~~~c~~~~~~C~~cy~~v~~---~~~-~~~~~~~v~~e~~~~lg~~~e~~~~~~~~~-----~~d~~c~p~le~~~~r~~ 104 (414)
T COG1625 34 CKDCIPYRFGCDDCYLSVNE---LDT-GFIPPLMVEKEPDEDLGLEFEEVLGAKQCG-----NGDTFCYPDLEPRGRRAR 104 (414)
T ss_pred CCcCCCccccccceeeEEec---ccC-CCCCHhHhhcccccccccccccccceeecC-----CCCcccCcchhhhhhHHH
Confidence 3445555 8888765321 111 446777777776521111221 222222 234567788888888887
Q ss_pred hcC----ceEEEe--CCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE
Q 020848 104 DMG----MEVCCT--LGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG 176 (320)
Q Consensus 104 ~~~----~~i~~~--~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G 176 (320)
..+ +.+..+ +|..+.+..+.|.++|+|-+++++.|. +++++++.+.+..++.++.+++..+.++.+.+.+++-
T Consensus 105 ~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~ 184 (414)
T COG1625 105 LYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLC 184 (414)
T ss_pred hhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCcHHHHHHHHHHHHHhhhheeeEEEEc
Confidence 543 454433 455677788889999999999999999 9999999999999999999999999999999888886
Q ss_pred eCCC-HHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCC
Q 020848 177 LGEA-EEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 177 lget-~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~--~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.|-| -+++.++++.|.++| +..+.++.+.|++-|.+.. .+++.++++.++..+.|.+...
T Consensus 185 PGvNdge~L~kT~~dL~~~g--~~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E 247 (414)
T COG1625 185 PGVNDGEELEKTLEDLEEWG--AHEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRE 247 (414)
T ss_pred CCcCcHHHHHHHHHHHHHhC--cCceeEEEeecceeeecCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 6777 789999999999998 6667777778888666543 2456777777777777666443
No 153
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.82 E-value=3.3e-07 Score=78.67 Aligned_cols=194 Identities=12% Similarity=0.098 Sum_probs=125.9
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-
Q 020848 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME- 108 (320)
Q Consensus 30 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~- 108 (320)
=.+||++|.||+.+.-+. .......++|++.+.+......|++.+-++||++. ...+.|++.++.+... ++
T Consensus 125 FsgCnfrCVfCQNwdISq--~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Pt-----p~lp~Ile~l~~~~~~-iPv 196 (335)
T COG1313 125 FSGCNFRCVFCQNWDISQ--FGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPT-----PHLPFILEALRYASEN-IPV 196 (335)
T ss_pred ecCcceEEEEecCccccc--cCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCC-----CchHHHHHHHHHHhcC-CCE
Confidence 368999999997764321 12344489999999999999999999999886422 2568899988887753 66
Q ss_pred EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC-CHHHHHHHHHHHHHcC--CeeeeeEEEEeCCCHHH-
Q 020848 109 VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR-SYDERLETLKHVREAG--INVCSGGIIGLGEAEED- 183 (320)
Q Consensus 109 i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~-~~~~~l~~i~~a~~~G--i~v~~~~i~Glget~ed- 183 (320)
+.-+|+.+++|.++.|... +|.+.-++.-. ++--.+..+.. =|+-+.+++..+.+.+ +-+.--++. | ..++
T Consensus 197 vwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g~~iiRHLVlP--g-hlecC 272 (335)
T COG1313 197 VWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVGGLIIRHLVLP--G-HLECC 272 (335)
T ss_pred EEecCCccCHHHHHHhhcc-ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcCceEEEEEecC--C-chhhc
Confidence 5677888999999998765 66666667666 55444444434 4577788888887764 323322233 3 2333
Q ss_pred HHHHHHHHhcCCCCCCeeee-eeeeecC-CCCCCC-CCCCCHHHHHHHHHHHHHh
Q 020848 184 RVGLLHTLATLPTHPESVPI-NALLAVK-GTPLQD-QKPVEIWEMIRMIATARIV 235 (320)
Q Consensus 184 ~~~~l~~l~~l~~~~~~v~~-~~~~p~~-gt~~~~-~~~~~~~e~~~~~a~~R~~ 235 (320)
-..+++|+.+.-..-..+.+ +.|.|.- ...+.+ ...++.+|+.+.+..++.+
T Consensus 273 TkpI~~wiae~~g~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335)
T COG1313 273 TKPILRWIAENLGNDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335)
T ss_pred cHHHHHHHHHhCCCCeeEEehhhccchhhhhhchhhcccCCHHHHHHHHHHHHHc
Confidence 56778888776311112333 3565632 111111 1357888888888777754
No 154
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=2.5e-07 Score=82.77 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=129.4
Q ss_pred EeecccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----------------
Q 020848 25 LLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---------------- 88 (320)
Q Consensus 25 ~l~~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge---------------- 88 (320)
+++ .-.||++-|+||..+-. .+.+ +..+.+-|+++++.+.+.|++++.+.|-.-..+.+
T Consensus 223 FvS-iMRGCdNMCtyCiVpft--rGre--Rsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~ 297 (552)
T KOG2492|consen 223 FVS-IMRGCDNMCTYCIVPFT--RGRE--RSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSP 297 (552)
T ss_pred HHH-HHhccccccceEEEecc--CCcc--cCCchHHHHHHHHHHhhcCceeeeeecccccccccchhhhhccCCccccCC
Confidence 444 46899999999965421 2322 33689999999999999999999886432111100
Q ss_pred -----------chhHHHHHHHHHHhhhcCceEE-Ee--CCCCCHHHHHHHHHhc--cCeeccCcccc-HHHHhhhCCCCC
Q 020848 89 -----------KTNFNQILEYVKDIRDMGMEVC-CT--LGMLEKHQAIELKKAG--LTAYNHNLDTS-REFYSKIITTRS 151 (320)
Q Consensus 89 -----------~~~~~~l~~~i~~~k~~~~~i~-~~--~g~l~~e~l~~L~~aG--ld~v~i~let~-~~~~~~i~~~~~ 151 (320)
.+.+..+++-+.... -.+.+- ++ +....++.++.+++.- ...+.+..++. .++++.++++.+
T Consensus 298 GFst~yK~K~gGl~Fa~LLd~vs~~~-PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgys 376 (552)
T KOG2492|consen 298 GFSTVYKPKQGGLRFAHLLDQVSRAD-PEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYS 376 (552)
T ss_pred CceeeecccCCCccHHHHHHHHhhhC-cceEEEecCCCCCCChHHHHHHHHhCcchhheeeccccCCchHHHHHHHccCC
Confidence 123344444444333 123332 33 3447788888887763 23456678888 789999999999
Q ss_pred HHHHHHHHHHHHHc--CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 152 YDERLETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 152 ~~~~l~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
.+.+++-....+.. |+...++++.|. |||.+|-..++-++++.| .+.+..+.|+=..+|..
T Consensus 377 reayl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~a 440 (552)
T KOG2492|consen 377 REAYLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRA 440 (552)
T ss_pred hHhhhhHHHHHHhhCCCCcceeeeEecccCCChHHHHHHHHHHHHhc--cCeeeeEEeeecccchh
Confidence 99998888888874 777889999999 999999999999999998 67777777776667643
No 155
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.76 E-value=3.4e-06 Score=73.73 Aligned_cols=204 Identities=13% Similarity=0.200 Sum_probs=129.8
Q ss_pred ccCCCCC----CCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-C--CC--EEEE-ecccCCCCCCchhHHHHHHH
Q 020848 29 KTGGCSE----DCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-G--ST--RFCM-GAAWRDTIGRKTNFNQILEY 98 (320)
Q Consensus 29 ~t~~C~~----~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g--~~--~i~l-~~g~~~~~ge~~~~~~l~~~ 98 (320)
.|.||.. .|.+|++..... ....+.|++.+....+... . .. .+.+ ++|.... .+....+....+
T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~-----~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD-~~EVP~e~R~~I 126 (358)
T COG1244 53 RTRGCRWYREGGCYMCGYPADSA-----GEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLD-PEEVPREARRYI 126 (358)
T ss_pred ecCCcceeccCCcceeccccccC-----CCCCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCC-hhhCCHHHHHHH
Confidence 6999985 389998764211 2227889999888766542 2 22 3555 4433221 112333445555
Q ss_pred HHHhhhcC-ce---EEEeCCCCCHHHHHHHHHh--cc-CeeccCcccc-HHHH-hhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 99 VKDIRDMG-ME---VCCTLGMLEKHQAIELKKA--GL-TAYNHNLDTS-REFY-SKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 99 i~~~k~~~-~~---i~~~~g~l~~e~l~~L~~a--Gl-d~v~i~let~-~~~~-~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
++.+.+.+ ++ +...+...++|.++++.+. |. -.|.++|||. +++. ..+.++.+|++.+++++.++++|+.+
T Consensus 127 l~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~v 206 (358)
T COG1244 127 LERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKV 206 (358)
T ss_pred HHHHhhccceeEEEeecCchhcCHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCce
Confidence 55665442 33 4455677999999999998 64 3588999999 7776 56888899999999999999999999
Q ss_pred eeeEEEEe-CCCHH-HHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 170 CSGGIIGL-GEAEE-DRVGLLHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 170 ~~~~i~Gl-get~e-d~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.+.+++-+ =-++. .+.+.+.-+.......+.+++++-...+||-++. ..||=..-+..++.-++...|.
T Consensus 207 ktYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~ 283 (358)
T COG1244 207 KTYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPM 283 (358)
T ss_pred eEEEEecccccChHHHHHHHHHHHHHhccCCCeEEecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCC
Confidence 99988755 12222 2333333333332237899999888888985432 2233334444444444555553
No 156
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=98.68 E-value=5.2e-08 Score=75.04 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=45.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCchh---HHHHHHHHHHh
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKTN---FNQILEYVKDI 102 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~--~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~ 102 (320)
+.|.+||++|.||....... ......++.+++.+.++.+...+. ..|.|+| |||+. .+.+.++++.+
T Consensus 3 ~~t~~Cnl~C~~C~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~G------GEPll~~~~~~l~~~i~~~ 74 (119)
T PF13394_consen 3 VRTSGCNLRCSYCYNKSSWS--PKKGEEMSIEELEEIIDELKEKGFRPSTVVFTG------GEPLLYLNPEDLIELIEYL 74 (119)
T ss_dssp ---S--S---TTTS-TTTSS--T-GGGS--HHHHHHHHHHHHHTT----EEEEES------SSGGGSTTHHHHHHHHCTS
T ss_pred CccCCcCCCCccCCcCccCC--CccCCcccHhHHHHHHHHHHhcCCceEEEEEEC------CCCccccCHHHHHHHHHHH
Confidence 36899999999998653221 123444789999999987777766 4577776 46763 37799999999
Q ss_pred hhcC--ceE-EEeCCCCC
Q 020848 103 RDMG--MEV-CCTLGMLE 117 (320)
Q Consensus 103 k~~~--~~i-~~~~g~l~ 117 (320)
++.+ ..+ ..|||.+.
T Consensus 75 ~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 75 KERGPEIKIRIETNGTLP 92 (119)
T ss_dssp TT-----EEEEEE-STTH
T ss_pred HhhCCCceEEEEeCCeec
Confidence 8766 554 46778765
No 157
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.67 E-value=4.5e-07 Score=72.19 Aligned_cols=96 Identities=18% Similarity=0.318 Sum_probs=64.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME 108 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~ 108 (320)
...+||++|.||..+.... ......++.+++++.++... ..+..|.|+| || ...+.+.++++.+|+.|+.
T Consensus 21 fl~GCnlrC~~C~n~~~~~--~~~g~~lt~eel~~~I~~~~-~~~~gVt~SG------GE-l~~~~l~~ll~~lk~~Gl~ 90 (147)
T TIGR02826 21 YITGCPLGCKGCHSPESWH--LSEGTKLTPEYLTKTLDKYR-SLISCVLFLG------GE-WNREALLSLLKIFKEKGLK 90 (147)
T ss_pred EeCCCCCCCCCCCChHHcC--CCCCcCCCHHHHHHHHHHhC-CCCCEEEEec------hh-cCHHHHHHHHHHHHHCCCC
Confidence 4669999999997764321 11123489999999987754 2356787876 45 5778899999999988888
Q ss_pred EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 109 VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 109 i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+..|...++..+++.+. +|.+..+
T Consensus 91 i~l~Tg~~~~~~~~~il~~-iD~l~~g 116 (147)
T TIGR02826 91 TCLYTGLEPKDIPLELVQH-LDYLKTG 116 (147)
T ss_pred EEEECCCCCHHHHHHHHHh-CCEEEEC
Confidence 6443344444455555443 5655544
No 158
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.64 E-value=2.3e-06 Score=76.04 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=121.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-
Q 020848 28 IKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM- 105 (320)
Q Consensus 28 ~~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~- 105 (320)
+.|++|...|.||.-...... .... ++.+++.+.++.+++.. +..|.|+||+.... .+ +.|..++++++++
T Consensus 116 l~t~~C~vyCRyCfRr~~~~~--~~~~-~~~~~~~~al~YIa~hPeI~eVllSGGDPL~l-s~---~~L~~ll~~L~~Ip 188 (369)
T COG1509 116 LVTGVCAVYCRYCFRRRFVGQ--DNQG-FNKEEWDKALDYIAAHPEIREVLLSGGDPLSL-SD---KKLEWLLKRLRAIP 188 (369)
T ss_pred EecCcccceeeeccccccccc--cccc-CCHHHHHHHHHHHHcCchhheEEecCCCcccc-CH---HHHHHHHHHHhcCC
Confidence 479999999999976543321 2222 68999999999888874 88999988754332 23 4455555555543
Q ss_pred Cce---EE-----EeCCCCCHHHHHHHHHhccCe-eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEE
Q 020848 106 GME---VC-----CTLGMLEKHQAIELKKAGLTA-YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGI 174 (320)
Q Consensus 106 ~~~---i~-----~~~g~l~~e~l~~L~~aGld~-v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i 174 (320)
+++ +. +.+.-++++..+.|.+.+... +...++...|+ -....++++.++++|+.+. +-++
T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei---------t~e~~~A~~~L~~aGv~l~NQsVLL 259 (369)
T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI---------TPEAREACAKLRDAGVPLLNQSVLL 259 (369)
T ss_pred ceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhc---------CHHHHHHHHHHHHcCceeecchhee
Confidence 222 21 334446788888887754321 12222221111 1345788999999999854 3345
Q ss_pred EEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC
Q 020848 175 IGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP 237 (320)
Q Consensus 175 ~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p 237 (320)
-|.+++.+-+.+++..+.+.++. -..++..-+.+|+.- -..+.++.++++...|...+
T Consensus 260 rGVND~~evl~~L~~~L~~~gV~--PYYl~~~D~~~G~~h---fr~~i~~~~~i~~~lr~~~S 317 (369)
T COG1509 260 RGVNDDPEVLKELSRALFDAGVK--PYYLHQLDLVQGAAH---FRVPIAEGLQIVEELRGRTS 317 (369)
T ss_pred cccCCCHHHHHHHHHHHHHcCCc--ceEEeccCccCCccc---eeccHHHHHHHHHHHHHhCC
Confidence 56789999999999999999843 334444445556542 24678888888888776654
No 159
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.47 E-value=0.00015 Score=63.72 Aligned_cols=218 Identities=14% Similarity=0.164 Sum_probs=143.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++..+.++.+.+.|++.+-++- +..+ + .=.+.++.+.+. +..+. .......+.++...++|++.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~~iE~g~---p~~~-~----~~~e~~~~l~~~~~~~~~~-~~~r~~~~~v~~a~~~g~~~ 85 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVDEIEVGI---PAMG-E----EEREAIRAIVALGLPARLI-VWCRAVKEDIEAALRCGVTA 85 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec---CCCC-H----HHHHHHHHHHhcCCCCEEE-EeccCCHHHHHHHHhCCcCE
Confidence 348999999999999999999998752 2222 1 112344444432 33321 22335678899999999999
Q ss_pred eccCcccc-HHHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTS-REFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~-~~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+.+-.. ....+.++.. ...+...+.++.+++.|+.+..++......+++.+.+.++.+.+.| ++.+.+
T Consensus 86 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l----- 158 (259)
T cd07939 86 VHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAG--ADRLRF----- 158 (259)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCC--CCEEEe-----
Confidence 99988666 3444555432 2456677888999999999888887766678899999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|+++.+++...+..+| ..+.+-. ...++.......++.+|++.+ +.|-+ ..++....++++
T Consensus 159 -~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G-~~aGN~~tE~lv 231 (259)
T cd07939 159 -ADTV----GILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG-ERAGNAALEEVV 231 (259)
T ss_pred -CCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-ccccCcCHHHHH
Confidence 2332 24567888888888877666 2221110 001122223456889999877 22221 235567899999
Q ss_pred HHHHHc-CCCc
Q 020848 285 LMFKVL-GLTP 294 (320)
Q Consensus 285 ~~i~~~-G~~p 294 (320)
.+++.. |+..
T Consensus 232 ~~l~~~~g~~~ 242 (259)
T cd07939 232 MALKHLYGRDT 242 (259)
T ss_pred HHHHHhcCCCC
Confidence 999987 8864
No 160
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=98.43 E-value=0.0002 Score=64.97 Aligned_cols=215 Identities=15% Similarity=0.113 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccc-----CCCCCCc--hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAW-----RDTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~-----~~~~ge~--~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++.+.++.+.+.|++.|-++-|. ....|.+ ...+++.++.+.++...+.+...+|.-+.+.++...++|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 899999999999999999999885211 1111211 234455555554443333445566777788999999999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.|.+...- ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 101 vd~iri~~~~-----------~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G--a~~i~i----- 162 (333)
T TIGR03217 101 ARTVRVATHC-----------TEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG--ADCVYI----- 162 (333)
T ss_pred CCEEEEEecc-----------chHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC--CCEEEE-----
Confidence 9998876421 2234568899999999999888888777778999999999999998 554433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~~ 283 (320)
.+|- ....++++.+++...|..++ +..+-+-+ ...++.-.....++.+|++.+-. |-+ ..++..+.+..
T Consensus 163 -~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G-~~aGN~~~E~l 236 (333)
T TIGR03217 163 -VDSA----GAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLG-AGAGNAPLEVF 236 (333)
T ss_pred -ccCC----CCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeeccccc-ccccCccHHHH
Confidence 1221 24668888888888887765 32222110 00112122335678899998722 210 12445778888
Q ss_pred HHHHHHcCCCc
Q 020848 284 QLMFKVLGLTP 294 (320)
Q Consensus 284 ~~~i~~~G~~p 294 (320)
+.++...|+.+
T Consensus 237 v~~l~~~g~~t 247 (333)
T TIGR03217 237 VAVLDRLGWNT 247 (333)
T ss_pred HHHHHhcCCCC
Confidence 88888888764
No 161
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.42 E-value=4.4e-06 Score=76.10 Aligned_cols=143 Identities=18% Similarity=0.146 Sum_probs=104.2
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EE-EeCCC---CCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGM---LEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~-~~~g~---l~~e~l~~L~~aGl 129 (320)
-+.|+|.+.++.++.. .+....++ .++|||+..++|.++++.+++.|+. +. .|||. .+.+..+.|+++|+
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq----~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~ 166 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQ----FTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGV 166 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeE----ecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCC
Confidence 7899999999988775 23333333 2347899999999999999998874 53 46775 46899999999999
Q ss_pred CeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 130 TAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 130 d~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
+.+.++.|+. ++.+.+. .-.+-++++.++++|+. +..--.+--|.|+.++-++++++... ++.++-..|.
T Consensus 167 ~tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n---~dvVrgVnfQ 238 (475)
T COG1964 167 NTVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNN---IDVVRGVNFQ 238 (475)
T ss_pred cEEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhc---cccccccceE
Confidence 9999999999 7776554 33334488999999976 33222221278889999999998865 3444555555
Q ss_pred ecC
Q 020848 208 AVK 210 (320)
Q Consensus 208 p~~ 210 (320)
|+.
T Consensus 239 PVs 241 (475)
T COG1964 239 PVS 241 (475)
T ss_pred EEE
Confidence 554
No 162
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=98.37 E-value=0.00029 Score=64.87 Aligned_cols=218 Identities=15% Similarity=0.183 Sum_probs=142.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+.+. ++. .......+.++.+.++|++.
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~v~-~~~r~~~~di~~a~~~g~~~ 87 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF---PIAS-----EGEFEAIKKISQEGLNAEIC-SLARALKKDIDKAIDCGVDS 87 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----hHHHHHHHHHHhcCCCcEEE-EEcccCHHHHHHHHHcCcCE
Confidence 348999999999999999999998753 2212 222456666654433 332 22235688899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ .....++.. ..++...+.++.+++.|+.+.+++.-....+++.+.+.++.+.+.| ++.+.+
T Consensus 88 i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (363)
T TIGR02090 88 IHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAG--ADRINI----- 160 (363)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 998877763 333344332 2467778899999999999887776655567888999999999998 555443
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|+++.+++...+..++ ..+.+-+ ...++.......++.+||..+ +.|-+ ..++..+.++++
T Consensus 161 -~DT~----G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlG-eraGN~~lE~vv 233 (363)
T TIGR02090 161 -ADTV----GVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG-ERAGNAALEEVV 233 (363)
T ss_pred -eCCC----CccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccc-cccccccHHHHH
Confidence 2332 24567777888877775554 2121110 001121223356788999877 23321 234567788888
Q ss_pred HHHHH-cCCCc
Q 020848 285 LMFKV-LGLTP 294 (320)
Q Consensus 285 ~~i~~-~G~~p 294 (320)
.+++. .|+.+
T Consensus 234 ~~L~~~~g~~~ 244 (363)
T TIGR02090 234 MALKYLYGVKT 244 (363)
T ss_pred HHHHHhhCCCC
Confidence 88887 78765
No 163
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.35 E-value=0.00041 Score=60.89 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..+|.++.++.++.+.+.|++.|-+++ +. .-+...+.++.+.+.+ ..+ ........+.++...++|++.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~~IEvG~---P~-----~~~~~~~~~~~l~~~~~~~~v-~~~~r~~~~di~~a~~~g~~~ 87 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVDYIELTS---PA-----ASPQSRADCEAIAKLGLKAKI-LTHIRCHMDDARIAVETGVDG 87 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEC---CC-----CCHHHHHHHHHHHhCCCCCcE-EEEecCCHHHHHHHHHcCcCE
Confidence 448999999999999999999998874 21 2233344444444322 223 222346788899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ -....+++. ...+...+.++.+++.|+.+..++.-..+-+++.+.++++.+.+.| ++.+.+
T Consensus 88 i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g--~~~i~l----- 160 (262)
T cd07948 88 VDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLG--VNRVGI----- 160 (262)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcC--CCEEEE-----
Confidence 998876663 233333222 2456677777999999999998887767777889999999999998 554432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceEe---eCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~~~~ 283 (320)
++|- ...+|+++.+++...+..++ ..+.+ -. ..++.-.....++.+|++.+- .|- =...+..+.+++
T Consensus 161 -~Dt~----G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn-~~Gla~an~~~a~~aG~~~vd~s~~Gl-GeraGn~~~e~~ 232 (262)
T cd07948 161 -ADTV----GIATPRQVYELVRTLRGVVS-CDIEFHGHN-DTGCAIANAYAALEAGATHIDTTVLGI-GERNGITPLGGL 232 (262)
T ss_pred -CCcC----CCCCHHHHHHHHHHHHHhcC-CeEEEEECC-CCChHHHHHHHHHHhCCCEEEEecccc-ccccCCccHHHH
Confidence 2332 24567788888887777665 22211 11 012222233567889999762 221 013455678888
Q ss_pred HHHHHHcCC
Q 020848 284 QLMFKVLGL 292 (320)
Q Consensus 284 ~~~i~~~G~ 292 (320)
+..+...+.
T Consensus 233 ~~~l~~~~~ 241 (262)
T cd07948 233 IARMYTADP 241 (262)
T ss_pred HHHHHhccc
Confidence 888866543
No 164
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=98.34 E-value=0.00034 Score=64.86 Aligned_cols=218 Identities=14% Similarity=0.172 Sum_probs=140.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+.+.. +.+ .+....+.++.+.++|++.
T Consensus 21 ~~~s~e~k~~ia~~L~~~GV~~IE~G~---p~~~-----~~~~e~i~~i~~~~~~~~i~~-~~r~~~~di~~a~~~g~~~ 91 (378)
T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAGF---PAVS-----EDEKEAIKAIAKLGLNASILA-LNRAVKSDIDASIDCGVDA 91 (378)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEeC---CCcC-----hHHHHHHHHHHhcCCCeEEEE-EcccCHHHHHHHHhCCcCE
Confidence 348999999999999999999997752 2222 2224455555544433 322 2334578899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+.+.+.+.+ ....+++.. ..++...+.++.+++.|+.+.+++..+...+.+.+.+.++.+.+.| ++.+.+
T Consensus 92 i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~I~l----- 164 (378)
T PRK11858 92 VHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG--ADRVRF----- 164 (378)
T ss_pred EEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 999887773 344444432 2456666788899999999888877655668889999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
++|- ....|.++.+++...+..++ ..+.+-+ ...++--.....++.+||..+ +.|-+ ..++....++++
T Consensus 165 -~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG-eraGNa~lE~vv 237 (378)
T PRK11858 165 -CDTV----GILDPFTMYELVKELVEAVD-IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG-ERAGNAALEEVV 237 (378)
T ss_pred -eccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecccc-ccccCccHHHHH
Confidence 2332 23567777888877765542 2221110 001111223356788999887 22321 234567788888
Q ss_pred HHHH-HcCCCc
Q 020848 285 LMFK-VLGLTP 294 (320)
Q Consensus 285 ~~i~-~~G~~p 294 (320)
.+++ ..|+..
T Consensus 238 ~~L~~~~g~~~ 248 (378)
T PRK11858 238 MALKYLYGIDL 248 (378)
T ss_pred HHHHHHhCCCC
Confidence 8887 477764
No 165
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=98.34 E-value=4.7e-05 Score=65.96 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHH-HHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQ-AIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~-l~~L~~aGld~v~i 134 (320)
++.++.++.++.+.+.|++.|-++. +..+ +...+.+.++.+.+.+..+.........+-+. ++.+++.|++.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i 86 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGF---PFAS-EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRI 86 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEH---CTSS-HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcc---cccC-HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEe
Confidence 8899999999999999999998872 1112 34555666555555542233334433323333 66677899999998
Q ss_pred CccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 135 NLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 135 ~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
.....+ -....++. ....+...+.++.+++.|+.+..++.....-+++++.+.++.+.++| ++.+.+- +
T Consensus 87 ~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~l~------D 158 (237)
T PF00682_consen 87 FISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAG--ADIIYLA------D 158 (237)
T ss_dssp EEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT---SEEEEE------E
T ss_pred cCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcC--CeEEEee------C
Confidence 876664 23333322 12356677788889999999977776655668899999999999998 6655432 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-cc-ccCCCCChhHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KL-LTTPNNDFDADQLMFK 288 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~-~~~~~~~~~~~~~~i~ 288 (320)
|- ...+|.++..++...+..+|+..+.+-. ...++--.....++.+||+.+-+.- ++ ..++..+.++++.+++
T Consensus 159 t~----G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~ 234 (237)
T PF00682_consen 159 TV----GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE 234 (237)
T ss_dssp TT----S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred cc----CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence 21 2456888899999999999874332211 0012222234678899999873210 01 1345578899999888
Q ss_pred HcC
Q 020848 289 VLG 291 (320)
Q Consensus 289 ~~G 291 (320)
.+|
T Consensus 235 ~~g 237 (237)
T PF00682_consen 235 RMG 237 (237)
T ss_dssp HT-
T ss_pred hcC
Confidence 876
No 166
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=98.31 E-value=0.00071 Score=60.22 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=141.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+.++.++.+.+.|++.|-+++...+.. -|.. .+-.+.++.+.+. +..+..-. ...+.+++..++|++.+
T Consensus 21 ~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~-~p~~-~d~~e~~~~l~~~~~~~~~~l~--~~~~~ie~A~~~g~~~v 96 (287)
T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKW-VPQM-ADAAEVMAGIQRRPGVTYAALT--PNLKGLEAALAAGADEV 96 (287)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCcCccc-cccc-ccHHHHHHhhhccCCCeEEEEe--cCHHHHHHHHHcCCCEE
Confidence 448999999999999999999998864322211 1211 1224555555432 33332211 36788899999999999
Q ss_pred ccCccccHH-HHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSRE-FYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~~-~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+.+.+. ..+++++. ..++...+.++.+++.|+.+..++.+-++ -+++.+.+.++.+.+.| ++.|.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l 174 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALG--CYEISL 174 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcC--CcEEEe
Confidence 998766632 33333322 23455677888899999987766654332 26778899999999998 555433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eC--C-ccc--c
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TG--E-KLL--T 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~--~-~~~--~ 274 (320)
++|- ....+.++.+++...+..+|+..+.+-. ...++.-.....++.+|++.+- .| + .|- .
T Consensus 175 ------~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~ 244 (287)
T PRK05692 175 ------GDTI----GVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGA 244 (287)
T ss_pred ------cccc----CccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCc
Confidence 2332 2356788888888887777653332210 0012222233568899999872 22 1 111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+..
T Consensus 245 aGN~~~E~lv~~L~~~g~~t 264 (287)
T PRK05692 245 SGNVATEDVLYMLHGLGIET 264 (287)
T ss_pred cccccHHHHHHHHHhcCCCC
Confidence 45678999999999888764
No 167
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=98.31 E-value=0.00082 Score=59.18 Aligned_cols=213 Identities=13% Similarity=0.108 Sum_probs=136.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccC-----CCCCCchhHHHHHHHHHHhhh-c-Cce--EEEeCCCCCHHHHHHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRKTNFNQILEYVKDIRD-M-GME--VCCTLGMLEKHQAIELK 125 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~-----~~~ge~~~~~~l~~~i~~~k~-~-~~~--i~~~~g~l~~e~l~~L~ 125 (320)
.++.++.++.++.+.+.|++.+-++.... ...+ +... .=.+.++.+++ . +.+ +...++....+.++...
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~-~~~~-~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYG-FAAH-TDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccC-CCCC-ChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 38999999999999999999988862110 0000 1111 11223333321 1 333 34456666678899999
Q ss_pred HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 126 KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 126 ~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
++|++.+.+..... +.....+.++.+++.|+.+..+++-....+++.+.+.++.+.+.| ++.+.+
T Consensus 96 ~~g~~~iri~~~~s-----------~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~d~i~l-- 160 (263)
T cd07943 96 DLGVDVVRVATHCT-----------EADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYG--ADCVYV-- 160 (263)
T ss_pred HcCCCEEEEEechh-----------hHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 99999988755322 223568899999999999888876655678899999999999998 555432
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCcee--ecCCcccccChhHHHHHHHcCCceEe---eCCccccCCCCCh
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMV--RLSAGRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDF 280 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i--~~~~g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~ 280 (320)
++|- ....|+++.+++...|..++...+ ..-.. .++--.....++.+|++.+- .|-+ ..++....
T Consensus 161 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~-~GlA~AN~laAi~aGa~~vd~s~~GlG-~~aGN~~~ 230 (263)
T cd07943 161 ----TDSA----GAMLPDDVRERVRALREALDPTPVGFHGHNN-LGLAVANSLAAVEAGATRIDGSLAGLG-AGAGNTPL 230 (263)
T ss_pred ----cCCC----CCcCHHHHHHHHHHHHHhCCCceEEEEecCC-cchHHHHHHHHHHhCCCEEEeeccccc-CCcCCccH
Confidence 2332 246688888888888877765111 11110 11111223567889998772 2210 12456788
Q ss_pred hHHHHHHHHcCCCc
Q 020848 281 DADQLMFKVLGLTP 294 (320)
Q Consensus 281 ~~~~~~i~~~G~~p 294 (320)
++++.+++..|+.+
T Consensus 231 E~lv~~L~~~g~~~ 244 (263)
T cd07943 231 EVLVAVLERMGIET 244 (263)
T ss_pred HHHHHHHHhcCCCC
Confidence 89899998888764
No 168
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=98.29 E-value=0.00071 Score=61.61 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=137.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccC-----CCCCCc--hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-----DTIGRK--TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~-----~~~ge~--~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++.+.++.+.+.|++.|-++-+.. ...|.+ ...+.+..+.+..++..+.....+|.-+.+.++...++|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 8999999999999999999988852211 001211 112222222222222233344556766788999999999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.+.+.... ...+...+.++.+++.|+.+...++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 102 vd~iri~~~~-----------~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~G--a~~i~i----- 163 (337)
T PRK08195 102 VRVVRVATHC-----------TEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYG--AQCVYV----- 163 (337)
T ss_pred CCEEEEEEec-----------chHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCC--CCEEEe-----
Confidence 9998876421 1234568899999999999988888767778999999999999998 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhC-CCceeecCC-cccccChhHHHHHHHcCCceEee---CCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVM-PKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~-p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~~~~~~~~~~~ 283 (320)
.+|- ....++++.+++...+..+ |+..+.+-+ ...++.-.....++.+|++.+-. |-+ ..++....+++
T Consensus 164 -~DT~----G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG-~~aGN~~tE~l 237 (337)
T PRK08195 164 -VDSA----GALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLG-AGAGNTPLEVL 237 (337)
T ss_pred -CCCC----CCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhc-ccccCccHHHH
Confidence 2221 2466888888888888777 343332210 00112122335678899997622 210 12445678888
Q ss_pred HHHHHHcCCC
Q 020848 284 QLMFKVLGLT 293 (320)
Q Consensus 284 ~~~i~~~G~~ 293 (320)
+.++.+.|+.
T Consensus 238 v~~L~~~g~~ 247 (337)
T PRK08195 238 VAVLDRMGWE 247 (337)
T ss_pred HHHHHhcCCC
Confidence 8888888875
No 169
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.29 E-value=4.9e-06 Score=67.07 Aligned_cols=85 Identities=15% Similarity=0.279 Sum_probs=56.1
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchh---HHHHHHHHHHhhhc
Q 020848 30 TGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTN---FNQILEYVKDIRDM 105 (320)
Q Consensus 30 t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~---~~~l~~~i~~~k~~ 105 (320)
..+||++|.||..+.... ......++.+++.+.++.+...+ +..|.|+| |||+. .+.+.++++.+|+.
T Consensus 22 ~~gCnl~C~~C~n~~~~~--~~~g~~~~~~~~~~i~~~l~~~~~~~gVt~sG------GEPllq~~~~~l~~ll~~~k~~ 93 (154)
T TIGR02491 22 VAGCKHHCEGCFNKETWN--FNGGKEFTEALEKEIIRDLNDNPLIDGLTLSG------GDPLYPRNVEELIELVKKIKAE 93 (154)
T ss_pred ECCCCCCCcCCCcccccC--CCCCCcCCHHHHHHHHHHHHhcCCcCeEEEeC------hhhCCCCCHHHHHHHHHHHHHh
Confidence 468999999998654321 11223488666666666666554 56787776 45653 47899999999854
Q ss_pred -Cce-EEEeCCCCCHHHHH
Q 020848 106 -GME-VCCTLGMLEKHQAI 122 (320)
Q Consensus 106 -~~~-i~~~~g~l~~e~l~ 122 (320)
+.. +..++|...++.++
T Consensus 94 ~~~~~~~~~tG~~~~~~~~ 112 (154)
T TIGR02491 94 FPEKDIWLWTGYTWEEILE 112 (154)
T ss_pred CCCCCEEEeeCccHHHHhc
Confidence 554 66788876665543
No 170
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=98.25 E-value=0.001 Score=58.90 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=143.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+-++.++.+.+.|++.|-+++...+... |. +.+-.+.++.+.. .+..+..-. ...+.+++..++|++.+
T Consensus 15 ~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~-p~-~~d~~~~~~~l~~~~~~~~~~~~--~~~~dv~~A~~~g~~~i 90 (274)
T cd07938 15 TFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWV-PQ-MADAEEVLAGLPRRPGVRYSALV--PNLRGAERALAAGVDEV 90 (274)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cc-cCCHHHHHhhcccCCCCEEEEEC--CCHHHHHHHHHcCcCEE
Confidence 3489999999999999999999988754332211 21 1122234444442 244432222 46778999999999999
Q ss_pred ccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC------CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG------EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg------et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+-+.+ -....++.. ...+...+.++.+++.|+.+..++..-++ -+.+.+.+.++.+.++| ++.+.+
T Consensus 91 ~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~G--a~~i~l 168 (274)
T cd07938 91 AVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLG--CDEISL 168 (274)
T ss_pred EEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE
Confidence 98887773 334444433 34577788899999999998777665442 25677888888888887 554433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eC---Ccc--cc
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TG---EKL--LT 274 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~---~~~--~~ 274 (320)
++|- ...+|.++.+++...+..+|+..+.+-. ...++-......++.+|++.+- .| ..| ..
T Consensus 169 ------~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~er 238 (274)
T cd07938 169 ------GDTI----GVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGA 238 (274)
T ss_pred ------CCCC----CccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCc
Confidence 2332 2356788888888887777753332211 0012222234568899998772 22 111 13
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++....++++.+++..|+.+
T Consensus 239 aGN~~~E~lv~~L~~~g~~t 258 (274)
T cd07938 239 TGNVATEDLVYMLEGMGIET 258 (274)
T ss_pred cCCcCHHHHHHHHHhcCCCC
Confidence 55678899999999888764
No 171
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.24 E-value=9.8e-06 Score=65.26 Aligned_cols=101 Identities=16% Similarity=0.276 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHcCC--CEEEEecccCCCCCCch---hHHHHHHHHHHhh
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGS--TRFCMGAAWRDTIGRKT---NFNQILEYVKDIR 103 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~g~--~~i~l~~g~~~~~ge~~---~~~~l~~~i~~~k 103 (320)
...+||++|.||....... ......++.+.+.+.++.+...+. ..|.|+| |||+ ..+.+.++++++|
T Consensus 22 f~~GCnl~C~~C~n~~~~~--~~~g~~~~~~~~~~il~~~~~~~~~~~gvt~sG------GEPl~~~~~~~l~~l~~~~k 93 (154)
T PRK11121 22 FVSGCVHQCPGCYNKSTWR--LNSGHPFTKEMEDQIIADLNDTRIKRQGLSLSG------GDPLHPQNVPDILKLVQRVK 93 (154)
T ss_pred EcCCCCCcCcCCCChhhcc--CCCCcccCHHHHHHHHHHHHHhCCCCCcEEEEC------CCccchhhHHHHHHHHHHHH
Confidence 3489999999997653211 111222454444444444444443 5677766 4564 4577888888887
Q ss_pred hc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 104 DM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 104 ~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+. +..+.+.+|...++.... .+.-++.+.+-+|+
T Consensus 94 ~~~~~~~i~~~tGy~~eel~~~-~~~~l~~~DvlvDG 129 (154)
T PRK11121 94 AECPGKDIWVWTGYKLDELNAA-QRQVVDLIDVLVDG 129 (154)
T ss_pred HHCCCCCEEEecCCCHHHHHHH-HHHHHhhCCEEEec
Confidence 43 456778889765554322 22224444455555
No 172
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=98.22 E-value=0.00098 Score=60.60 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=138.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++.|+=++.++.+.+.|++.|-++....+. .-|. +.+-.+.++.+++ .+..+..- ....+.++...++|++.|
T Consensus 63 ~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk-~vPq-mad~~ev~~~i~~~~~~~~~~l--~~n~~die~A~~~g~~~v 138 (347)
T PLN02746 63 NIVPTSVKVELIQRLVSSGLPVVEATSFVSPK-WVPQ-LADAKDVMAAVRNLEGARFPVL--TPNLKGFEAAIAAGAKEV 138 (347)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCcCcc-cccc-cccHHHHHHHHHhccCCceeEE--cCCHHHHHHHHHcCcCEE
Confidence 44899999999999999999999886532111 1121 2233334444443 23332111 137899999999999999
Q ss_pred ccCccccHHH-HhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeE--EEEe---C-CCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 133 NHNLDTSREF-YSKIITT--RSYDERLETLKHVREAGINVCSGG--IIGL---G-EAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 133 ~i~let~~~~-~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~--i~Gl---g-et~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
.+.+-+.+.. ..+++.. ..++...+.++.+++.|+.+..++ .+|. + -+.+.+.+.++.+.+.| ++.|.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G--ad~I~l 216 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG--CYEISL 216 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC--CCEEEe
Confidence 9988665432 2233222 244555678888999999887555 3443 1 25677888888888888 555433
Q ss_pred eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceEe---eC---Cccc--
Q 020848 204 NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TG---EKLL-- 273 (320)
Q Consensus 204 ~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~---~~~~-- 273 (320)
.+|- ....+.++.+++...+..+|...+.+ -.. .++--.....++.+|+..+- .| ..|-
T Consensus 217 ------~DT~----G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd-~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~g 285 (347)
T PLN02746 217 ------GDTI----GVGTPGTVVPMLEAVMAVVPVDKLAVHFHDT-YGQALANILVSLQMGISTVDSSVAGLGGCPYAKG 285 (347)
T ss_pred ------cCCc----CCcCHHHHHHHHHHHHHhCCCCeEEEEECCC-CChHHHHHHHHHHhCCCEEEEecccccCCCCCCC
Confidence 2332 23457788888887777676432222 110 12222234568899999872 22 1122
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++....++++.+++.+|+..
T Consensus 286 raGN~atE~lv~~L~~~G~~t 306 (347)
T PLN02746 286 ASGNVATEDVVYMLNGLGVST 306 (347)
T ss_pred CCCChhHHHHHHHHHhcCCCC
Confidence 245577899999999988764
No 173
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=98.21 E-value=0.00091 Score=61.74 Aligned_cols=218 Identities=14% Similarity=0.182 Sum_probs=139.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++.++.++.+.+.|++.|-++. +..+ +.=.+.++.+.+. +..+ ........+.++...++|++.
T Consensus 18 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~---p~~~-----~~~~e~i~~i~~~~~~~~i-~~~~r~~~~di~~a~~~g~~~ 88 (365)
T TIGR02660 18 VAFTAAEKLAIARALDEAGVDELEVGI---PAMG-----EEERAVIRAIVALGLPARL-MAWCRARDADIEAAARCGVDA 88 (365)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHcCCCcEE-EEEcCCCHHHHHHHHcCCcCE
Confidence 348999999999999999999998752 2222 2224445555433 2333 223345688899999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+-+.+ ....+++.. ...+...+.++.+++.|+.+..++..+..-+++.+.+.++.+.+.| ++.+.
T Consensus 89 i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~------ 160 (365)
T TIGR02660 89 VHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAG--ADRFR------ 160 (365)
T ss_pred EEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC--cCEEE------
Confidence 998886663 344444432 2345566889999999998887776655567888899999999888 55432
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~~ 284 (320)
+++|- ....+.++.+++...+..++ ..+.+-+ ...++--.....++.+||+.+ +.|-+ ..++..+.++++
T Consensus 161 l~DT~----G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiG-eraGN~~lE~lv 234 (365)
T TIGR02660 161 FADTV----GILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG-ERAGNAALEEVA 234 (365)
T ss_pred EcccC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccc-cccccCCHHHHH
Confidence 23432 24567788888877765543 1121110 001111223456889999987 23321 235567788888
Q ss_pred HHH-HHcCCCc
Q 020848 285 LMF-KVLGLTP 294 (320)
Q Consensus 285 ~~i-~~~G~~p 294 (320)
..+ ...|+.+
T Consensus 235 ~~L~~~~g~~~ 245 (365)
T TIGR02660 235 MALKRLLGRDT 245 (365)
T ss_pred HHHHHhcCCCC
Confidence 888 6677764
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=98.18 E-value=0.0015 Score=57.45 Aligned_cols=212 Identities=14% Similarity=0.124 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeccc--CCCC-CCc--hhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAW--RDTI-GRK--TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~--~~~~-ge~--~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
.++.++..+.++.+.+.|++.|-++-.. .... +-. ...+.+..+.+..+ +..+.....++..+.+.++...+.|
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 95 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSV 95 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCC
Confidence 3899999999999999999998876211 0000 000 11233333333332 3334445566666788898889999
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
++.+.+.. +...++...+.++.+++.|+.+..+++.....+++.+.+.++.+.+.| ++.+.+
T Consensus 96 v~~iri~~-----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g--~~~i~l----- 157 (266)
T cd07944 96 VDMIRVAF-----------HKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK--PDVFYI----- 157 (266)
T ss_pred cCEEEEec-----------ccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 99988864 234788889999999999999999988877888999999999999987 655433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecCC-cccccChhHHHHHHHcCCceEe---eCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~~~~~~~~~~~ 283 (320)
++|- ....|+++.+++...+..++. ..+.+-+ ...++.......++.+||..+- .|-+- .++..+.+++
T Consensus 158 -~DT~----G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~-~aGN~~~E~~ 231 (266)
T cd07944 158 -VDSF----GSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR-GAGNLPTELL 231 (266)
T ss_pred -ecCC----CCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC-CcCcHHHHHH
Confidence 2331 246688888888888877663 2222210 0011212233567889998762 22100 2455678888
Q ss_pred HHHHHHc
Q 020848 284 QLMFKVL 290 (320)
Q Consensus 284 ~~~i~~~ 290 (320)
+.++...
T Consensus 232 v~~l~~~ 238 (266)
T cd07944 232 LDYLNNK 238 (266)
T ss_pred HHHHHHh
Confidence 8888776
No 175
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=98.11 E-value=0.0021 Score=56.79 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=139.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhc----
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAG---- 128 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aG---- 128 (320)
.++.++.++.++.+.+.|++.|-++... .+ |..+ +.++.+.+. +..+..-. ....+.++...++|
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~---~~-~~~~----~~~~~l~~~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPA---AS-PGDF----EAVKRIAREVLNAEICGLA-RAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHHH----HHHHHHHHhCCCCEEEEEc-cCCHhhHHHHHHhCCCCC
Confidence 4899999999999999999999886421 11 2222 444554432 33332111 12367778888888
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
++.+.+..-..+ .....++.. ..++...+.++.+++.|+.+..+++.+...+++.+.+.++.+.++| ++.+.+
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~i~l-- 162 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG--ATTINI-- 162 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC--CCEEEE--
Confidence 998888765553 344444432 3467788899999999999887777766668888999999999998 555433
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--ceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCCCC
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK--AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNND 279 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~--~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~ 279 (320)
++|- ....++++.+++...|..+|+ ..+.+-. ...++.-.....++.+|+..+ +.|-+ ..++...
T Consensus 163 ----~DT~----G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG-~~aGN~~ 233 (268)
T cd07940 163 ----PDTV----GYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGNAA 233 (268)
T ss_pred ----CCCC----CCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc-ccccccc
Confidence 2331 236688888888888887775 2222110 001111122356788999877 22211 2345678
Q ss_pred hhHHHHHHHHcC
Q 020848 280 FDADQLMFKVLG 291 (320)
Q Consensus 280 ~~~~~~~i~~~G 291 (320)
.++++.++...|
T Consensus 234 tE~lv~~L~~~~ 245 (268)
T cd07940 234 LEEVVMALKTRY 245 (268)
T ss_pred HHHHHHHHHhcc
Confidence 899999998886
No 176
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=98.09 E-value=0.00025 Score=62.59 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHcC--CCE--EEEecccCCCCCCchhHHHHHHHHHH-------------hh---h-----cCceEE
Q 020848 56 MTKDAVMQAAQKAKEAG--STR--FCMGAAWRDTIGRKTNFNQILEYVKD-------------IR---D-----MGMEVC 110 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g--~~~--i~l~~g~~~~~ge~~~~~~l~~~i~~-------------~k---~-----~~~~i~ 110 (320)
-+.++....++.++..| ++. +.+-||+.....+ ...+.++.-+.. ++ + .|+.+.
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe-~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIE 228 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPE-EYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIE 228 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChH-HHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceeeeEEee
Confidence 35677777888888877 333 3344554443332 222333222211 11 0 133344
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-C-CCHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-G-EAEEDRVGL 187 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-g-et~ed~~~~ 187 (320)
+.+..-....+..+...|+.++.+++++. +++-+.-.++|+...+-+.+..++++|+++.+++|..+ + .-+.|+...
T Consensus 229 TRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF 308 (554)
T KOG2535|consen 229 TRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQF 308 (554)
T ss_pred cCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCceeehhhCCCCCCCchhhhHHHH
Confidence 55555568889999999999999999999 88888888899999999999999999999999999887 3 344577777
Q ss_pred HHHHhcCCCCCCeeeeeeeeecCCCCCCC------CCCCCHHHHHHHHHHHHHhCCC
Q 020848 188 LHTLATLPTHPESVPINALLAVKGTPLQD------QKPVEIWEMIRMIATARIVMPK 238 (320)
Q Consensus 188 l~~l~~l~~~~~~v~~~~~~p~~gt~~~~------~~~~~~~e~~~~~a~~R~~~p~ 238 (320)
.+++..=.-.++-+.+++-..+.||.+.. ...-++.++..++|..-.+.|.
T Consensus 309 ~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPP 365 (554)
T KOG2535|consen 309 KEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPP 365 (554)
T ss_pred HHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCc
Confidence 77776543236778888888888987643 3456788888887755445554
No 177
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=9.9e-06 Score=68.65 Aligned_cols=85 Identities=16% Similarity=0.303 Sum_probs=58.5
Q ss_pred ccCCCCCCCCCCCCCCCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc
Q 020848 29 KTGGCSEDCSYCPQSSRYDT-GVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM 107 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~-~~~~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~ 107 (320)
-..|||++|.||........ ....+..++.++|++.++... .+...|+|+| |||...+.+.++++.+++.|+
T Consensus 28 R~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~lTG------GEP~~~~~l~~Ll~~l~~~g~ 100 (212)
T COG0602 28 RFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSLTG------GEPLLQPNLLELLELLKRLGF 100 (212)
T ss_pred EcCCCCCCCCCCCChhhhcccccCCCCccCHHHHHHHHHhcC-CCcceEEEeC------CcCCCcccHHHHHHHHHhCCc
Confidence 46799999999975432110 012345589999998887532 2344787776 578777789999999998898
Q ss_pred eEEE-eCCCCCHHH
Q 020848 108 EVCC-TLGMLEKHQ 120 (320)
Q Consensus 108 ~i~~-~~g~l~~e~ 120 (320)
++.. |+|.+....
T Consensus 101 ~~~lETngti~~~~ 114 (212)
T COG0602 101 RIALETNGTIPVWT 114 (212)
T ss_pred eEEecCCCCccccc
Confidence 8644 567654443
No 178
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.96 E-value=0.008 Score=53.18 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=133.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEE--E---eCCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC--C---TLGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~--~---~~g~--l~~e~l~~ 123 (320)
..++.|+..+.++.+.+.|++.|-++.+. .. |.. .+.++.+.+. +.++. . ..+. ..+..++.
T Consensus 15 ~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~---~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 86 (273)
T cd07941 15 ISFSVEDKLRIARKLDELGVDYIEGGWPG---SN-PKD----TEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQA 86 (273)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecCCc---CC-HHH----HHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHH
Confidence 44899999999999999999999885421 11 223 3333444322 22221 1 1222 23457888
Q ss_pred HHHhccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEE---EeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGII---GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~---Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|++.+.+.+-+.+ .....+++. ..++...+.++.+++.|+.+..+.+. +...+++.+.+.++.+.+.|
T Consensus 87 a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-- 164 (273)
T cd07941 87 LLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-- 164 (273)
T ss_pred HHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC--
Confidence 99999999988776663 334444332 46777888999999999987775442 22345777788888888887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~ 273 (320)
++.+.+ ++|- ....|+++.+++...+..+|+..+.+-. ...++.-.....++.+||..+- .|-+ .
T Consensus 165 ~~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlG-e 233 (273)
T cd07941 165 ADWLVL------CDTN----GGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYG-E 233 (273)
T ss_pred CCEEEE------ecCC----CCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccc-c
Confidence 554332 2332 2456788888888888777763332210 0012222234568889998772 2211 1
Q ss_pred cCCCCChhHHHHHHH-HcCC
Q 020848 274 TTPNNDFDADQLMFK-VLGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~-~~G~ 292 (320)
.++..+.++++..++ ..|+
T Consensus 234 raGn~~~e~~~~~L~~~~~~ 253 (273)
T cd07941 234 RCGNANLCSIIPNLQLKMGY 253 (273)
T ss_pred ccccccHHHHHHHHHhccCC
Confidence 345567777777776 4565
No 179
>PRK09389 (R)-citramalate synthase; Provisional
Probab=97.93 E-value=0.0055 Score=58.66 Aligned_cols=217 Identities=14% Similarity=0.144 Sum_probs=135.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
..++.++-++.++.+.+.|++.|-++.. ..+ +.. .+.++.+.+.+ .++..- .....+.++.+.++|++.
T Consensus 19 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~~-~~d----~e~v~~i~~~~~~~~i~a~-~r~~~~di~~a~~~g~~~ 89 (488)
T PRK09389 19 VSLTPEEKLEIARKLDELGVDVIEAGSA---ITS-EGE----REAIKAVTDEGLNAEICSF-ARAVKVDIDAALECDVDS 89 (488)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEeCC---cCC-HHH----HHHHHHHHhcCCCcEEEee-cccCHHHHHHHHhCCcCE
Confidence 3489999999999999999999987642 111 222 34445554332 333221 223467799999999999
Q ss_pred eccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 132 YNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 132 v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.+.+.+.+ .....++.. ..++...+.++.+++.|+.+..+..-+...+.+-+.+.++.+.+.| ++.+.+
T Consensus 90 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G--a~~i~l----- 162 (488)
T PRK09389 90 VHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAG--ADRICF----- 162 (488)
T ss_pred EEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCC--CCEEEE-----
Confidence 999887773 333334322 2456777788889999998887776655556777888999988887 555433
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec--CCcccccChhHHHHHHHcCCceE---eeCCccccCCCCChhHH
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL--SAGRVRFSMPEQALCFLAGANSI---FTGEKLLTTPNNDFDAD 283 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~~~~~~~ 283 (320)
++|- ....|.++.+++...+...+ ..+.+ -.. .++--.....++.+||..+ +.|-+ ..++..+.+++
T Consensus 163 -~DTv----G~~~P~~~~~lv~~l~~~~~-v~l~~H~HND-~GlAvANalaAv~aGa~~Vd~Ti~GiG-ERaGNa~lE~l 234 (488)
T PRK09389 163 -CDTV----GILTPEKTYELFKRLSELVK-GPVSIHCHND-FGLAVANTLAALAAGADQVHVTINGIG-ERAGNASLEEV 234 (488)
T ss_pred -ecCC----CCcCHHHHHHHHHHHHhhcC-CeEEEEecCC-ccHHHHHHHHHHHcCCCEEEEEccccc-ccccCccHHHH
Confidence 3442 23556777777776655443 11111 110 1111123456889999887 33321 24556778888
Q ss_pred HHHHHH-cCCCc
Q 020848 284 QLMFKV-LGLTP 294 (320)
Q Consensus 284 ~~~i~~-~G~~p 294 (320)
+.+++. .|..+
T Consensus 235 v~~L~~~~g~~~ 246 (488)
T PRK09389 235 VMALKHLYDVET 246 (488)
T ss_pred HHHHHhhcCCCC
Confidence 887876 36654
No 180
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.92 E-value=0.012 Score=52.30 Aligned_cols=221 Identities=14% Similarity=0.124 Sum_probs=137.4
Q ss_pred CCCCHHHHHHHHHHH-HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKA-KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~-~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
..+|.|+-++.++.+ .+.|++.|-++. +... |..++.+.++.+..... ++.+..-. .....++...++|
T Consensus 14 ~~~s~e~K~~i~~~L~~~~Gv~~IEvg~---~~~s-~~e~~av~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~A~~~g 87 (280)
T cd07945 14 VSFSPSEKLNIAKILLQELKVDRIEVAS---ARVS-EGEFEAVQKIIDWAAEEGLLDRIEVLGFV--DGDKSVDWIKSAG 87 (280)
T ss_pred CccCHHHHHHHHHHHHHHhCCCEEEecC---CCCC-HHHHHHHHHHHHHhhhhccccCcEEEEec--CcHHHHHHHHHCC
Confidence 348999999999986 667999998864 1111 22333344333322211 23332211 2356788899999
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeC----CCHHHHHHHHHHHhcCCCCCCee
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLG----EAEEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg----et~ed~~~~l~~l~~l~~~~~~v 201 (320)
++.+.+.+-+++ ....++++. ..++++.+.++.+++.|+.+..++.- .+ -+++.+.+.++.+.++| ++.+
T Consensus 88 ~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~~~~~~~~~~~~~~~G--~~~i 164 (280)
T cd07945 88 AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDSPDYVFQLVDFLSDLP--IKRI 164 (280)
T ss_pred CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCCHHHHHHHHHHHHHcC--CCEE
Confidence 999999886663 344444432 35677788888999999988777654 32 36788899999999998 5554
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
.+ ++|- ....|.++.+++...+..+|+..+.+-. ...++.-.....++.+|++.+ +.|-+ ..++.
T Consensus 165 ~l------~DT~----G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG-e~aGN 233 (280)
T cd07945 165 ML------PDTL----GILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG-ERAGN 233 (280)
T ss_pred Ee------cCCC----CCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-ccccC
Confidence 33 2332 2356777888888777766654332211 001222223456889999877 22221 23456
Q ss_pred CChhHHHHHHHH-cCCCc
Q 020848 278 NDFDADQLMFKV-LGLTP 294 (320)
Q Consensus 278 ~~~~~~~~~i~~-~G~~p 294 (320)
...++++.+++. .|+..
T Consensus 234 ~~~E~~v~~L~~~~g~~t 251 (280)
T cd07945 234 APLASVIAVLKDKLKVKT 251 (280)
T ss_pred ccHHHHHHHHHHhcCCCc
Confidence 788899988854 78764
No 181
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=97.86 E-value=0.0096 Score=52.75 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CC------CCCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LG------MLEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g------~l~~e 119 (320)
.++.++.++.++.+.+.|+..|-++++.... .++ ...+.+.++.+...+..+..... .| ...++
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~-~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~ 95 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNE-DPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVEL 95 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCC-CHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHH
Confidence 4899999999999999999999887532100 121 12333333333222222222211 11 13677
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|++.|.+... ..+.+...+.++.+++.|+.+...+.+ +...+++.+.+.++.+.+.|
T Consensus 96 di~~~~~~g~~~iri~~~-----------~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-- 162 (275)
T cd07937 96 FVEKAAKNGIDIFRIFDA-----------LNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-- 162 (275)
T ss_pred HHHHHHHcCCCEEEEeec-----------CChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC--
Confidence 888899999999888652 234678899999999999887765543 33467888999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEe---eCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIF---TGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~---~~~~~~ 273 (320)
++.+.+ .+|- ....++++.+++...|..++ ..+.+-. ...++-......++.+||..+- .|-+ .
T Consensus 163 a~~i~l------~DT~----G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG-~ 230 (275)
T cd07937 163 ADSICI------KDMA----GLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLS-G 230 (275)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc-C
Confidence 665443 2331 33567888888888887665 2221100 0011222233567889998872 2210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++..+.++++.+++..|+..
T Consensus 231 ~aGN~~~E~l~~~L~~~g~~~ 251 (275)
T cd07937 231 GTSQPSTESMVAALRGTGRDT 251 (275)
T ss_pred CcCChhHHHHHHHHHccCCCC
Confidence 245577888899998888753
No 182
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.78 E-value=0.00065 Score=62.93 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=92.8
Q ss_pred eCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCH-HHHHHHHH
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAE-EDRVGLLH 189 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~-ed~~~~l~ 189 (320)
|...++++.+++..+.+++-+++|+.+. |++..++.+.....+.++.++++.++|+.+...+++-.|-|+ +++.+++.
T Consensus 122 TLTNl~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~ 201 (433)
T TIGR03279 122 TLTNLPPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLR 201 (433)
T ss_pred eecCCCHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHH
Confidence 3344889999999999999999999999 999999988888999999999999999998888887667666 68899999
Q ss_pred HHhcCCC-CCCeeeeeeeeecCCCCCC----CCCCCCHHHHHHHHHH
Q 020848 190 TLATLPT-HPESVPINALLAVKGTPLQ----DQKPVEIWEMIRMIAT 231 (320)
Q Consensus 190 ~l~~l~~-~~~~v~~~~~~p~~gt~~~----~~~~~~~~e~~~~~a~ 231 (320)
.|.+++. ....+.=...+|++=|.+. ...+.+.++..+.+..
T Consensus 202 dL~~~~~~~~P~v~S~avVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ 248 (433)
T TIGR03279 202 DLAQFHDGDWPTVLSVAVVPVGLTRFRPEEDELTPVTPECARRVIAQ 248 (433)
T ss_pred HHHhhcccCCCceeEEEEEccccccCCCCCCCCccCCHHHHHHHHHH
Confidence 9998821 0123344455677766653 3356667666666543
No 183
>PRK00915 2-isopropylmalate synthase; Validated
Probab=97.73 E-value=0.0081 Score=57.96 Aligned_cols=215 Identities=16% Similarity=0.144 Sum_probs=129.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHH----HHHHh
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAI----ELKKA 127 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~----~L~~a 127 (320)
..++.++-++.++.+.+.|++.|-++.. ..+ |..++.+ +.+.+. +..+..-. ....+.++ .++++
T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IE~G~p---~~s-~~d~~~v----~~i~~~~~~~~i~a~~-r~~~~did~a~~a~~~~ 91 (513)
T PRK00915 21 ASLTVEEKLQIAKQLERLGVDVIEAGFP---ASS-PGDFEAV----KRIARTVKNSTVCGLA-RAVKKDIDAAAEALKPA 91 (513)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCC---CCC-hHHHHHH----HHHHhhCCCCEEEEEc-cCCHHHHHHHHHHhhcC
Confidence 3489999999999999999999987531 112 2233333 444321 33332211 11233344 44478
Q ss_pred ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.++|.+.+.+.+ .....++.. ...+...+.++.+++.|+.+..+..-+..-+.+.+.+.++.+.+.| ++.+.+
T Consensus 92 ~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~G--a~~i~l- 168 (513)
T PRK00915 92 EAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAG--ATTINI- 168 (513)
T ss_pred CCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcC--CCEEEE-
Confidence 8888998887773 344444332 2445566888899999998877766555456777899999999888 554332
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCC-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
++|- ....|.++.+++..++..+|. ..+.+-+ .-.++--.....++.+||..+ +.|-+ ..++.
T Consensus 169 -----~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlG-ERaGN 238 (513)
T PRK00915 169 -----PDTV----GYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG-ERAGN 238 (513)
T ss_pred -----ccCC----CCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeeccc-ccccC
Confidence 3442 235678888888887776664 2222211 001111123456889999987 33321 23455
Q ss_pred CChhHHHHHHHHc
Q 020848 278 NDFDADQLMFKVL 290 (320)
Q Consensus 278 ~~~~~~~~~i~~~ 290 (320)
.+.++++..++..
T Consensus 239 a~lE~vv~~L~~~ 251 (513)
T PRK00915 239 AALEEVVMALKTR 251 (513)
T ss_pred ccHHHHHHHHHhh
Confidence 6777777777654
No 184
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.63 E-value=0.016 Score=49.48 Aligned_cols=196 Identities=9% Similarity=-0.003 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++-.+.++++.+.+.|++.+++ ...++..-. -..=+++++.++. .. ++.+++++ .++.++.+.++|.|.+
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN-itfGp~~i~~i~~--~~~~DvHLMv~~---P~~~i~~~~~aGad~I 95 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPF-FTVGAIAIKQFPT--HCFKDVHLMVRD---QFEVAKACVAAGADIV 95 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-cccCHHHHHHhCC--CCCEEEEeccCC---HHHHHHHHHHhCCCEE
Confidence 45568888888888899998876 221111100 0111344444432 22 22333332 4678999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+.+ +..+.++..++.|+.+..++.+..+-..+.+...+.. ++.|-++.-.| |.
T Consensus 96 t~H~Ea~~-------------~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~-------vD~VLiMtV~P--Gf 153 (228)
T PRK08091 96 TLQVEQTH-------------DLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQ-------IDLIQILTLDP--RT 153 (228)
T ss_pred EEcccCcc-------------cHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhh-------cCEEEEEEECC--CC
Confidence 99887631 1356778889999867778777666566666555543 45677777655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
. .+.. ....+..+..+|.+.+. ..|.+.+ ++..+.......+||+.++.|..+.. ..+..+.++.++
T Consensus 154 g--GQ~f--~~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~ti~~l~~aGaD~~V~GSalF~--~~d~~~~i~~l~ 224 (228)
T PRK08091 154 G--TKAP--SDLILDRVIQVENRLGNRRVEKLISIDG---SMTLELASYLKQHQIDWVVSGSALFS--QGELKTTLKEWK 224 (228)
T ss_pred C--Cccc--cHHHHHHHHHHHHHHHhcCCCceEEEEC---CCCHHHHHHHHHCCCCEEEEChhhhC--CCCHHHHHHHHH
Confidence 2 2121 12234445555554433 2244443 34444446778899999988874432 223555555544
No 185
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=97.61 E-value=0.026 Score=53.83 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.+..++.+.+.|+..+-..||-+.. .+| ..++.+-.+-+.+++..+..+.. .|. +-+.
T Consensus 23 r~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~E-dpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~ 101 (499)
T PRK12330 23 RMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNE-DPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDR 101 (499)
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHH
Confidence 3899999999999999999999887654332 222 23344444333344333443332 122 2245
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--EEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--IIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+.... .+.+....+++.++++|..+...+ +.+.-.+.+.+.+.++.+.+.|
T Consensus 102 fv~~a~~~Gidi~RIfd~l-----------ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-- 168 (499)
T PRK12330 102 FVEKSAENGMDVFRVFDAL-----------NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-- 168 (499)
T ss_pred HHHHHHHcCCCEEEEEecC-----------ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC--
Confidence 6777788899988875422 334566778888899998764454 3355678999999999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CceeecCC-cccccChhHHHHHHHcCCceEee---CCcc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMP-KAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKL 272 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~ 272 (320)
++.|.+ ++|. ....+.+..+++...+..+| +..+.+-+ ...++....-..++.+||+.+-. |-..
T Consensus 169 ad~I~I------kDta----Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~ 238 (499)
T PRK12330 169 ADSICI------KDMA----ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSL 238 (499)
T ss_pred CCEEEe------CCCc----cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccc
Confidence 665543 2332 34667888888888887775 43333211 01122222335688999998722 2111
Q ss_pred ccCCCCChhHHHHHHHHcCCCc
Q 020848 273 LTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 273 ~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++.++.++++.+++..|+..
T Consensus 239 -~aGn~atE~vv~~L~~~g~~t 259 (499)
T PRK12330 239 -GPGHNPTESLVEMLEGTGYTT 259 (499)
T ss_pred -cccchhHHHHHHHHHhcCCCC
Confidence 234577889999999888754
No 186
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.55 E-value=0.054 Score=51.25 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.++.++.+.+.|+..+-+.||.+.. .+ +..++.+..+-+.+++..+..... .|. +.++
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~-e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~ 100 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN-EDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVES 100 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC-CCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHH
Confidence 4899999999999999999999886553221 12 122222222222222222222121 122 3456
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+..-..+ . ....++++.+++.|+.+...+.+ +.-.+.+-+.+.++.+.+.|
T Consensus 101 ~v~~A~~~Gvd~irif~~lnd-~----------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-- 167 (448)
T PRK12331 101 FVQKSVENGIDIIRIFDALND-V----------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-- 167 (448)
T ss_pred HHHHHHHCCCCEEEEEEecCc-H----------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC--
Confidence 778889999999888653331 1 23566889999999886554433 22357788888999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-c
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-T 274 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~ 274 (320)
++.|.+ ++|- ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-..- .+- .
T Consensus 168 ad~I~i------~Dt~----G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~g 236 (448)
T PRK12331 168 ADSICI------KDMA----GILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGG 236 (448)
T ss_pred CCEEEE------cCCC----CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCC
Confidence 555443 2332 23567777888887776664 2222210 0112222334568899999872210 111 2
Q ss_pred CCCCChhHHHHHHHHcCCCc
Q 020848 275 TPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 275 ~~~~~~~~~~~~i~~~G~~p 294 (320)
++..+.++++.+++..|+..
T Consensus 237 aGN~~tE~lv~~L~~~g~~t 256 (448)
T PRK12331 237 TSQPATESMVAALQDLGYDT 256 (448)
T ss_pred cCCHhHHHHHHHHHhcCCCC
Confidence 55678889999998887764
No 187
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.51 E-value=0.043 Score=53.65 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--Cce--EEEe--C--CC------CCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--GM------LEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~--~--g~------l~~e~ 120 (320)
.++.++.++.++.+.+.|+..+-+.||-+....-+..-++=.+.++.+++. +.. .+.. | |. +.++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~ 96 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERF 96 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHH
Confidence 489999999999999999999988755322210011112234444444431 233 2222 1 22 23556
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-.. +.+....+++.+++.|+.+...+-+-. -.+.+.+.+.++.+.+.| +
T Consensus 97 v~~a~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G--a 163 (582)
T TIGR01108 97 VKKAVENGMDVFRIFDALN-----------DPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG--V 163 (582)
T ss_pred HHHHHHCCCCEEEEEEecC-----------cHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 7888899999888764222 224567888999999998776644322 257888999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-cc-ccC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KL-LTT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~-~~~ 275 (320)
+.+.+ ++|. ....+.+..+++...|..++ ..+.+-+ ...++....-..++.+||+.+-..- ++ ..+
T Consensus 164 d~I~i------~Dt~----G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~t 232 (582)
T TIGR01108 164 DSICI------KDMA----GILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGT 232 (582)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccc
Confidence 54433 3332 23567778888887776665 2222110 0012222233568899999872210 01 134
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+..+.++++.+++..|+..
T Consensus 233 Gn~~le~vv~~L~~~g~~t 251 (582)
T TIGR01108 233 SHPPTETMVAALRGTGYDT 251 (582)
T ss_pred cChhHHHHHHHHHhcCCCc
Confidence 5678888888888887654
No 188
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.50 E-value=0.066 Score=50.83 Aligned_cols=216 Identities=12% Similarity=0.058 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceE--EEe--C--CC------CCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEV--CCT--L--GM------LEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i--~~~--~--g~------l~~e~ 120 (320)
.++.++.+..++.+.+.|+..+-+.||......-....++-.+.++.+++. +..+ ... | |. +-+..
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 489999999999999999999988654321100000111223444444321 2332 112 1 22 11233
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-..+ .+....+++.+++.|..+...+-+ +...+.+-+.+.++.+.+.| +
T Consensus 101 v~~A~~~Gvd~irif~~lnd-----------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G--a 167 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALND-----------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG--V 167 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCH-----------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 77778889998888653322 345577889999999887655443 33457888899999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|- ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-..- .+- .+
T Consensus 168 d~I~i------~Dt~----G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~ga 236 (467)
T PRK14041 168 DSICI------KDMA----GLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGT 236 (467)
T ss_pred CEEEE------CCcc----CCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCC
Confidence 55433 2332 23567778888887776665 2222110 0012222233568899999872210 121 23
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 237 gN~atE~lv~~L~~~g~~t 255 (467)
T PRK14041 237 SQPPFESMYYAFRENGKET 255 (467)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 4677888888888877653
No 189
>PRK14057 epimerase; Provisional
Probab=97.37 E-value=0.04 Score=47.76 Aligned_cols=182 Identities=10% Similarity=0.043 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+++++.++. .. ++.+++.+ .+..++.+.++|.|.
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN--itfGp~~i~~i~~--~~p~DvHLMV~~---P~~~i~~~~~aGad~ 101 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ--FTVGPWAVGQLPQ--TFIKDVHLMVAD---QWTAAQACVKAGAHC 101 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc--cccCHHHHHHhcc--CCCeeEEeeeCC---HHHHHHHHHHhCCCE
Confidence 45678888899988899998876 22211110 0111344444432 22 23334432 467799999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-------eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-------VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-------v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.+..|+. .. ..+.++..++.|.+ +..++.+..+-..+.+...+.. ++.|-++
T Consensus 102 It~H~Ea~----------~~---~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-------vD~VLvM 161 (254)
T PRK14057 102 ITLQAEGD----------IH---LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD-------VEVIQLL 161 (254)
T ss_pred EEEeeccc----------cC---HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-------CCEEEEE
Confidence 99988863 11 24667777888874 4567776555555555555532 4567777
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.-.| |.. .+. . ..+.+..+..+|.+.+. ..|.+.+ ++..+.-.....+||+.++.|..+.
T Consensus 162 tV~P--Gfg--GQ~-F-i~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~ti~~l~~aGad~~V~GSalF 225 (254)
T PRK14057 162 AVNP--GYG--SKM-R-SSDLHERVAQLLCLLGDKREGKIIVIDG---SLTQDQLPSLIAQGIDRVVSGSALF 225 (254)
T ss_pred EECC--CCC--chh-c-cHHHHHHHHHHHHHHHhcCCCceEEEEC---CCCHHHHHHHHHCCCCEEEEChHhh
Confidence 7655 432 111 1 12234444444444433 2344443 3444444567889999998887443
No 190
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.37 E-value=0.12 Score=50.79 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCC------CCHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGM------LEKH 119 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~------l~~e 119 (320)
.++.++.+..++.+.+.|+..+-+.||-+.. .+| ..++.+-.+.+.+.+..+..+.. .|. .-++
T Consensus 23 r~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e-~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~ 101 (593)
T PRK14040 23 RLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGE-DPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVER 101 (593)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCC-CHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHH
Confidence 3889999999999999999999886552222 232 22333333333333333333332 121 1244
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE--EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI--IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i--~Glget~ed~~~~l~~l~~l~~~ 197 (320)
.++...++|+|.+.+.. . -.+.+....+++.+++.|..+...+. .....+.+.+.+.++.+.+.|
T Consensus 102 ~v~~a~~~Gid~~rifd-~----------lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-- 168 (593)
T PRK14040 102 FVERAVKNGMDVFRVFD-A----------MNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-- 168 (593)
T ss_pred HHHHHHhcCCCEEEEee-e----------CCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC--
Confidence 57788899999988863 1 12345678899999999987544433 333567888899999999998
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEee---CCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFT---GEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~---~~~~~ 273 (320)
++.+.+ .+|. ....+.+..+++...+..+. ..+.+-+ ...++.......++.+||+.+-. |-+ .
T Consensus 169 ad~i~i------~Dt~----G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG-~ 236 (593)
T PRK14040 169 VDSLCI------KDMA----GLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMS-M 236 (593)
T ss_pred CCEEEE------CCCC----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEecccccc-c
Confidence 555443 2321 23567778888877776553 2222110 00122222335688999998722 210 1
Q ss_pred cCCCCChhHHHHHHHHcCCCc
Q 020848 274 TTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G~~p 294 (320)
.++.++.+.++.+++..|+..
T Consensus 237 ~~Gn~~le~vv~~L~~~~~~~ 257 (593)
T PRK14040 237 TYGHSATETLVATLEGTERDT 257 (593)
T ss_pred cccchhHHHHHHHHHhcCCCc
Confidence 345677888888888777653
No 191
>PRK08005 epimerase; Validated
Probab=97.32 E-value=0.08 Score=44.76 Aligned_cols=182 Identities=13% Similarity=0.026 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++......+ .+++++ .+..++.+.++|.|.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~ 84 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIEDTSFINN--ITFGMKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGW 84 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc--cccCHHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCE
Confidence 35567888888888899988876 22211110 0111445555554322222 233332 467899999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..|+.+ . ..+.++.+++.|++. ++.+..+-..+.+...+.. ++.|-++.-.| |
T Consensus 85 It~H~Ea~~----------~---~~~~l~~Ik~~G~k~--GlAlnP~Tp~~~i~~~l~~-------vD~VlvMsV~P--G 140 (210)
T PRK08005 85 IFIHAESVQ----------N---PSEILADIRAIGAKA--GLALNPATPLLPYRYLALQ-------LDALMIMTSEP--D 140 (210)
T ss_pred EEEcccCcc----------C---HHHHHHHHHHcCCcE--EEEECCCCCHHHHHHHHHh-------cCEEEEEEecC--C
Confidence 999887631 1 246678888889765 4444444455555544432 45667766655 4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
..-+ . . ..+.++.++.+|.+.+...+.+.+ ++..+.-.....+||+.++.|..+.
T Consensus 141 f~GQ--~-f-~~~~~~KI~~l~~~~~~~~I~VDG---GI~~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 141 GRGQ--Q-F-IAAMCEKVSQSREHFPAAECWADG---GITLRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred Cccc--e-e-cHHHHHHHHHHHHhcccCCEEEEC---CCCHHHHHHHHHCCCCEEEEChHhh
Confidence 3311 1 1 223455566666666654455543 3444444567889999998886443
No 192
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.29 E-value=0.12 Score=50.77 Aligned_cols=215 Identities=13% Similarity=0.056 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--Cce--EEEe--C--C------CCCHHH
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GME--VCCT--L--G------MLEKHQ 120 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~--i~~~--~--g------~l~~e~ 120 (320)
.++.++.+..+..+.+.|+..+-+.||-.....-....++-++.++.+++. +.. .+.. | | .+-++.
T Consensus 22 r~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~ 101 (592)
T PRK09282 22 RMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKF 101 (592)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHH
Confidence 388999999999999999999988655321100001223445555555532 233 2222 1 2 124566
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++...++|+|.+.+..-.. +......+++.+++.|..+...+.+ +...+.+.+.+.++.+.+.| +
T Consensus 102 v~~A~~~Gvd~irif~~ln-----------d~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G--a 168 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALN-----------DVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG--C 168 (592)
T ss_pred HHHHHHCCCCEEEEEEecC-----------hHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC--C
Confidence 8888899999888754222 2345678889999999987766544 22457888999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC-Cccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG-EKLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~-~~~~-~~ 275 (320)
+.|.+ .+|. ....+.+..+++...|..++ ..+.+-+ ...++.......++.+||+.+-.. ..+- .+
T Consensus 169 d~I~i------~Dt~----G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~a 237 (592)
T PRK09282 169 DSICI------KDMA----GLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGT 237 (592)
T ss_pred CEEEE------CCcC----CCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCc
Confidence 55433 2332 23567777888887776664 2222210 001222223356889999987221 0111 23
Q ss_pred CCCChhHHHHHHHHcCCC
Q 020848 276 PNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~ 293 (320)
+.++.+.++.+++..|+.
T Consensus 238 gn~~~e~vv~~L~~~g~~ 255 (592)
T PRK09282 238 SQPPTESMVAALKGTPYD 255 (592)
T ss_pred CCHhHHHHHHHHHhCCCC
Confidence 467788888888887765
No 193
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=97.28 E-value=0.17 Score=47.90 Aligned_cols=214 Identities=11% Similarity=0.068 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-----CCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC------HHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-----IGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE------KHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-----~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~------~e~ 120 (320)
++.++++..+..+.+.|+..+-+.||-+.. ..| ..++.+-.+-+.+++..+..... .|... +..
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~e-dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~f 110 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNE-DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKF 110 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCC-CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHH
Confidence 889999999999999999999886653322 222 23444544444454444443332 12211 233
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~ 198 (320)
++...+.|+|.+.+.- . -.+.+....+++.+++.|..+...+.+-. ..+.+-+.+.++.+.++| +
T Consensus 111 v~~a~~~Gidi~Rifd--------~---lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G--a 177 (468)
T PRK12581 111 ISLSAQNGIDVFRIFD--------A---LNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG--A 177 (468)
T ss_pred HHHHHHCCCCEEEEcc--------c---CCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC--C
Confidence 7777888998877632 2 23667778899999999988654444422 456677888888888888 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|. ....+.+..+++...+.. ++..+.+-+ ...++....-..++.+||+.+-..- .+- .+
T Consensus 178 d~I~I------kDta----G~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ga 246 (468)
T PRK12581 178 DSICI------KDMA----GILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGT 246 (468)
T ss_pred CEEEE------CCCC----CCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 55443 2322 245677777777777653 332222210 0112222233568899999872210 111 23
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 247 gN~~tE~lv~~L~~~g~~t 265 (468)
T PRK12581 247 SQPATESMYLALKEAGYDI 265 (468)
T ss_pred CChhHHHHHHHHHhcCCCC
Confidence 4577888888888887764
No 194
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.28 E-value=0.094 Score=44.81 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=112.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHh-hhcCc--eEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDI-RDMGM--EVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~-k~~~~--~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++.. .+..+ .+++++ .+..++.+.++|.|
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN--~tfg~~~i~~lr~~~~~~~~dvHLMv~~---P~~~i~~~~~~gad 87 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPN--LTIGPMVCQALRKHGITAPIDVHLMVEP---VDRIVPDFADAGAT 87 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC--cccCHHHHHHHHhhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 34567888888888899988876 33321110 01114455555544 22223 333332 46679999999999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.|.+..|+. .. ..+.++..++.|++. ++.+..+-..+.+...+.. ++.|-++.-.|
T Consensus 88 ~I~~H~Ea~----------~~---~~~~l~~Ir~~g~k~--GlalnP~T~~~~i~~~l~~-------vD~VlvMtV~P-- 143 (223)
T PRK08745 88 TISFHPEAS----------RH---VHRTIQLIKSHGCQA--GLVLNPATPVDILDWVLPE-------LDLVLVMSVNP-- 143 (223)
T ss_pred EEEEcccCc----------cc---HHHHHHHHHHCCCce--eEEeCCCCCHHHHHHHHhh-------cCEEEEEEECC--
Confidence 999988763 11 246778888888765 4444344454555544432 45677777655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC----CceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p----~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
|..-+..-+ ..+..++.+|.+.+ +..|.+.+ ++..+.-.....+||+.++.|..+.. ..++.+.++.
T Consensus 144 Gf~GQ~fi~----~~l~KI~~l~~~~~~~~~~~~IeVDG---GI~~eti~~l~~aGaDi~V~GSaiF~--~~d~~~~~~~ 214 (223)
T PRK08745 144 GFGGQAFIP----SALDKLRAIRKKIDALGKPIRLEIDG---GVKADNIGAIAAAGADTFVAGSAIFN--APDYAQVIAQ 214 (223)
T ss_pred CCCCccccH----HHHHHHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEChhhhC--CCCHHHHHHH
Confidence 433222111 22333444444433 23344443 34444445677899999999874332 2356777777
Q ss_pred HHHc
Q 020848 287 FKVL 290 (320)
Q Consensus 287 i~~~ 290 (320)
+++.
T Consensus 215 lr~~ 218 (223)
T PRK08745 215 MRAA 218 (223)
T ss_pred HHHH
Confidence 7654
No 195
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=97.24 E-value=0.15 Score=49.33 Aligned_cols=217 Identities=14% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEEE-----eCCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVCC-----TLGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~~-----~~g~--l~~e~l~~ 123 (320)
..++.++.++.++.+.+.|++.|-++... .. |.. .+.++++.+. +.++.. ..+. ..+..++.
T Consensus 22 ~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~---as-~~d----~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~ 93 (524)
T PRK12344 22 ISFSVEDKLRIARKLDELGVDYIEGGWPG---SN-PKD----TEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQA 93 (524)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCc---CC-hhH----HHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHH
Confidence 44899999999999999999999875311 11 222 3334444321 233221 1122 24567889
Q ss_pred HHHhccCeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEE---EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|++.+.+.+-+.+ .....++. ...++...+.++.+++.|.++..+.. -+.-.+.+-+.+.++.+.+.|
T Consensus 94 ~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~G-- 171 (524)
T PRK12344 94 LLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-- 171 (524)
T ss_pred HHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCC--
Confidence 99999999999887763 33334432 23566777888889999998776554 222345666788888888887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
++.+. +++|- ....|.++.+++...+..+ +..+.+-+ .-.++--.....++.+||..+ +.|-+ .
T Consensus 172 ad~i~------l~DTv----G~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlG-E 239 (524)
T PRK12344 172 ADWVV------LCDTN----GGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYG-E 239 (524)
T ss_pred CCeEE------EccCC----CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 55544 34443 3456777777777665544 22222111 001111223356889999987 22321 1
Q ss_pred cCCCCChhHHHHHHHH-cCC
Q 020848 274 TTPNNDFDADQLMFKV-LGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~-~G~ 292 (320)
.++....++++-.+.. .|+
T Consensus 240 RaGNa~lE~lv~~L~~~~g~ 259 (524)
T PRK12344 240 RCGNANLCSIIPNLQLKMGY 259 (524)
T ss_pred cccCcCHHHHHHHHHhccCC
Confidence 3455677777755543 675
No 196
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=97.23 E-value=0.21 Score=48.42 Aligned_cols=218 Identities=13% Similarity=0.113 Sum_probs=131.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---CceEE--Ee---CCC--CCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---GMEVC--CT---LGM--LEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---~~~i~--~~---~g~--l~~e~l~~ 123 (320)
..++.++-++.++.+.+.|++.|-++- +... |..++ .++++.+. +.+++ .. .+. ..+..++.
T Consensus 18 ~~~s~eeKl~Ia~~L~~~GVd~IE~G~---p~~s-~~d~~----~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea 89 (526)
T TIGR00977 18 VSFSLEDKIRIAERLDDLGIHYIEGGW---PGAN-PKDVQ----FFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQA 89 (526)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-hHHHH----HHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHH
Confidence 348999999999999999999997752 1111 33333 33444322 23332 21 121 22567899
Q ss_pred HHHhccCeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEE---EEeCCCHHHHHHHHHHHhcCCCC
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGI---IGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i---~Glget~ed~~~~l~~l~~l~~~ 197 (320)
+.++|.+.+.+.+-+.+ .....++. ....+...+.++.+++.|..+..... -+.--+++.+.+.++.+.+.|
T Consensus 90 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aG-- 167 (526)
T TIGR00977 90 LIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAG-- 167 (526)
T ss_pred HhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCC--
Confidence 99999999999887773 33334432 22456667778899999988765443 333356788899999998887
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
++.+.+. +|- ....|.++.+++...+..+|...+-+-+ .-.++--.....++.+||..+ +.|-+ .
T Consensus 168 ad~i~i~------DTv----G~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiG-E 236 (526)
T TIGR00977 168 ADWLVLC------DTN----GGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYG-E 236 (526)
T ss_pred CCeEEEe------cCC----CCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc-C
Confidence 6655442 332 2456788888888887777653232211 001111123456889999987 22321 1
Q ss_pred cCCCCChhHHHHHHH-HcCC
Q 020848 274 TTPNNDFDADQLMFK-VLGL 292 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~-~~G~ 292 (320)
.++..+.++++-.+. ..|+
T Consensus 237 RaGNa~Le~v~~~L~~~~g~ 256 (526)
T TIGR00977 237 RCGNANLCSLIPNLQLKLGY 256 (526)
T ss_pred ccCCCcHHHHHHHHHhhcCC
Confidence 334455555555444 3555
No 197
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=97.23 E-value=0.19 Score=48.26 Aligned_cols=217 Identities=16% Similarity=0.126 Sum_probs=124.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc---------Cc-eEEEeCCCCCHHHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM---------GM-EVCCTLGMLEKHQAIE 123 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~---------~~-~i~~~~g~l~~e~l~~ 123 (320)
..++.|+-++.++.+.+.|++.|-++. +..+ +.-.+.++.+.+. ++ ......+....+.++.
T Consensus 101 v~fs~eeKi~Ia~~L~~~GVd~IEvG~---Pa~s-----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~ 172 (503)
T PLN03228 101 GSLTPPQKLEIARQLAKLRVDIMEVGF---PGSS-----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEA 172 (503)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---CCCC-----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHH
Confidence 348999999999999999999887753 2212 2333334444321 11 1112223334445555
Q ss_pred HHHh----ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 124 LKKA----GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 124 L~~a----Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
-.++ |.++|.+.+-+.+ -...+++.. ...+...+.++.+++.|+. +..++-.+.--+.+.+.+.++.+.+.|
T Consensus 173 a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~G 252 (503)
T PLN03228 173 AWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAG 252 (503)
T ss_pred HHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcC
Confidence 5444 7778888776663 233344332 2456677788889999985 444443322234555688888888887
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--Cc-ccccChhHHHHHHHcCCceEe---e
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--AG-RVRFSMPEQALCFLAGANSIF---T 268 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~g-~~~~~~~~~~~~~~~Gan~~~---~ 268 (320)
++.+.+ ++|- ....+.++.+++...+..+|.. .+++. +- ..++--.....++.+||..+- .
T Consensus 253 --ad~I~l------~DTv----G~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~ 320 (503)
T PLN03228 253 --ATSVGI------ADTV----GINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTIN 320 (503)
T ss_pred --CCEEEE------ecCC----CCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecc
Confidence 555432 3332 3356777888887777666532 12221 10 011112233568899999872 2
Q ss_pred CCccccCCCCChhHHHHHHHHcC
Q 020848 269 GEKLLTTPNNDFDADQLMFKVLG 291 (320)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~i~~~G 291 (320)
|-+ ..++....++++.+++..|
T Consensus 321 GiG-ERaGNa~lEevv~~L~~~~ 342 (503)
T PLN03228 321 GIG-ERSGNASLEEVVMALKCRG 342 (503)
T ss_pred ccc-cccCCccHHHHHHHHHhcc
Confidence 321 1345677888888887744
No 198
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=97.19 E-value=0.099 Score=50.28 Aligned_cols=214 Identities=15% Similarity=0.093 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHH----HHHHh
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAI----ELKKA 127 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~----~L~~a 127 (320)
..++.++-++.++.+.+.|++.|-++. +..+ +..++. ++.+.+. +..++.- ....++.++ .+..+
T Consensus 18 ~~~s~e~K~~ia~~L~~~GV~~IEvG~---p~~s-~~d~e~----v~~i~~~~~~~~i~al-~r~~~~did~a~~al~~~ 88 (494)
T TIGR00973 18 ASLTVEEKLQIALALERLGVDIIEAGF---PVSS-PGDFEA----VQRIARTVKNPRVCGL-ARCVEKDIDAAAEALKPA 88 (494)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEEC---CCCC-HHHHHH----HHHHHHhCCCCEEEEE-cCCCHHhHHHHHHhcccc
Confidence 338999999999999999999997753 1112 223333 3444321 2333221 122344444 44445
Q ss_pred ccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+.++|.+.+-+.+ ....+++.. ...+...+.++.+++.|..+..+..-+..-+.+.+.++++.+.+.| ++.+.
T Consensus 89 ~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G--a~~i~-- 164 (494)
T TIGR00973 89 EKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAG--ATTIN-- 164 (494)
T ss_pred CCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC--CCEEE--
Confidence 7788888877773 333444322 2345566788889999988777766655557788899999999887 55433
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--C-cccccChhHHHHHHHcCCceE---eeCCccccCCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--A-GRVRFSMPEQALCFLAGANSI---FTGEKLLTTPN 277 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~~~~~ 277 (320)
+++|- ....|.++.+++...+..+|.. .+.++ + .-.++--.....++.+||..+ +.|-+ ..++.
T Consensus 165 ----l~DTv----G~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG-ERaGN 235 (494)
T TIGR00973 165 ----IPDTV----GYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG-ERAGN 235 (494)
T ss_pred ----eCCCC----CCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc-ccccC
Confidence 33443 2356778888888777766642 12221 0 001111123456889999987 33321 23455
Q ss_pred CChhHHHHHHHH
Q 020848 278 NDFDADQLMFKV 289 (320)
Q Consensus 278 ~~~~~~~~~i~~ 289 (320)
.+.++++-.++.
T Consensus 236 a~le~vv~~L~~ 247 (494)
T TIGR00973 236 AALEEVVMALKV 247 (494)
T ss_pred ccHHHHHHHHHH
Confidence 677777766654
No 199
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=97.15 E-value=0.13 Score=48.14 Aligned_cols=193 Identities=13% Similarity=0.184 Sum_probs=123.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEe-CC--CCCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCT-LG--MLEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~-~g--~l~~e~l~~L~~aGl 129 (320)
..++.|+-++.++.+.+.|++.|-.+... .-+.-.+.++.+. ..+..+.+. .+ ...+..++.+.++|+
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~--------~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~ 90 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPV--------ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGV 90 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCc--------CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCC
Confidence 34899999999999999999999775421 2233333444433 333311111 11 134568999999999
Q ss_pred CeeccCccccH-HHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 130 TAYNHNLDTSR-EFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 130 d~v~i~let~~-~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
+.+.+.+.+.+ -....++. ....+...+.++.+++.|+.+..+..-...-+++.+.+.++.+...| +..+.+
T Consensus 91 ~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g--a~~i~l--- 165 (409)
T COG0119 91 DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG--ADRINL--- 165 (409)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC--CcEEEE---
Confidence 99999888873 33333332 23567778888899999988776666555667888899998888776 444433
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecCCc-ccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
++|- ....+.++..++...+..+|+ ..+.+-+- -.++--.....++.+||+.+
T Consensus 166 ---~DTv----G~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 166 ---PDTV----GVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred ---CCCc----CccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 3442 345677888888888877774 33322110 01111123467899999987
No 200
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.13 E-value=0.13 Score=43.42 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCH--HHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEK--HQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~--e~l~~L~~aGld~ 131 (320)
.++++.++.++.+ +.|++-+-++. ++..+.=.+.++.+++. +..+....-.++. ..++.+.++|.|.
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~--------~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGT--------PLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 6789999999887 77887666642 22223334555565532 3333222222232 2689999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++.+ ....+.++.+++.|+++.+.++ +..+ ..+.+..+.+++ ++.+.++ ||
T Consensus 80 i~vh~~~~~------------~~~~~~i~~~~~~g~~~~~~~~-~~~t----~~~~~~~~~~~g--~d~v~~~-----pg 135 (206)
T TIGR03128 80 VTVLGVADD------------ATIKGAVKAAKKHGKEVQVDLI-NVKD----KVKRAKELKELG--ADYIGVH-----TG 135 (206)
T ss_pred EEEeccCCH------------HHHHHHHHHHHHcCCEEEEEec-CCCC----hHHHHHHHHHcC--CCEEEEc-----CC
Confidence 987654421 2335667788888987654321 1222 223333335556 6666552 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
+.-....+...+. +...+..++...+.+.+ ++..+.-...+.+|++.+..|..+.. ..++.+.++.+++
T Consensus 136 ~~~~~~~~~~~~~----i~~l~~~~~~~~i~v~G---GI~~~n~~~~~~~Ga~~v~vGsai~~--~~d~~~~~~~l~~ 204 (206)
T TIGR03128 136 LDEQAKGQNPFED----LQTILKLVKEARVAVAG---GINLDTIPDVIKLGPDIVIVGGAITK--AADPAEAARQIRK 204 (206)
T ss_pred cCcccCCCCCHHH----HHHHHHhcCCCcEEEEC---CcCHHHHHHHHHcCCCEEEEeehhcC--CCCHHHHHHHHHh
Confidence 3211222222222 33333444443343333 23333345667899999988764432 2346666665543
No 201
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.13 Score=43.41 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhcCc--eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGM--EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~~~--~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++..+.++++.+.+.|++-+++ +..++..-. -+.=+.+++.++...+.-+ ..++.+ .+..++.+.++|.|.|
T Consensus 13 aD~~~l~~el~~~~~agad~iH~DVMDghFVPN-iTfGp~~v~~l~~~t~~p~DvHLMV~~---p~~~i~~fa~agad~I 88 (220)
T COG0036 13 ADFARLGEELKALEAAGADLIHIDVMDGHFVPN-ITFGPPVVKALRKITDLPLDVHLMVEN---PDRYIEAFAKAGADII 88 (220)
T ss_pred CCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC-cccCHHHHHHHhhcCCCceEEEEecCC---HHHHHHHHHHhCCCEE
Confidence 35567778888888899998877 332222110 1122566666666433322 233332 3778999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHH-HHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEED-RVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed-~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
++..|..+. ..++++..++.|.+.++ .+- .+|+-+ +...+.. ++.|-++.-.| |
T Consensus 89 t~H~E~~~~-------------~~r~i~~Ik~~G~kaGv--~ln-P~Tp~~~i~~~l~~-------vD~VllMsVnP--G 143 (220)
T COG0036 89 TFHAEATEH-------------IHRTIQLIKELGVKAGL--VLN-PATPLEALEPVLDD-------VDLVLLMSVNP--G 143 (220)
T ss_pred EEEeccCcC-------------HHHHHHHHHHcCCeEEE--EEC-CCCCHHHHHHHHhh-------CCEEEEEeECC--C
Confidence 998874221 24667788888876543 332 234333 3333322 46777877766 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.. .+.. ..+.+..++.+|.+.+. ..|.+.+ ++..+....+..+|||.++.|..+
T Consensus 144 fg--GQ~F--i~~~l~Ki~~lr~~~~~~~~~~IeVDG---GI~~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 144 FG--GQKF--IPEVLEKIRELRAMIDERLDILIEVDG---GINLETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred Cc--cccc--CHHHHHHHHHHHHHhcccCCeEEEEeC---CcCHHHHHHHHHcCCCEEEEEEEE
Confidence 22 1111 23345666667777763 3445543 344455566778999999988743
No 202
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.11 Score=42.49 Aligned_cols=192 Identities=17% Similarity=0.201 Sum_probs=120.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE-ecccC----CCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHHHh
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM-GAAWR----DTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l-~~g~~----~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~~a 127 (320)
++..+.+++.++...|++-+++ +..++ .|.| +-+.+.++.-... +...++. -.++.+..+.++
T Consensus 15 dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G-----~pvV~slR~~~~~~~ffD~HmMV~---~Peq~V~~~a~a 86 (224)
T KOG3111|consen 15 DFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFG-----PPVVESLRKHTGADPFFDVHMMVE---NPEQWVDQMAKA 86 (224)
T ss_pred chHHHHHHHHHHHHcCCCeEEEeeecccccCCcccc-----hHHHHHHHhccCCCcceeEEEeec---CHHHHHHHHHhc
Confidence 4567778888888899988776 22212 2223 3455555543211 2223332 236779999999
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
|.+.+.+..|..+ + +.+.++.+++.|+++++.+= .|-..+++...+.. ++.+-++..-
T Consensus 87 gas~~tfH~E~~q----------~---~~~lv~~ir~~Gmk~G~alk--PgT~Ve~~~~~~~~-------~D~vLvMtVe 144 (224)
T KOG3111|consen 87 GASLFTFHYEATQ----------K---PAELVEKIREKGMKVGLALK--PGTPVEDLEPLAEH-------VDMVLVMTVE 144 (224)
T ss_pred CcceEEEEEeecc----------C---HHHHHHHHHHcCCeeeEEeC--CCCcHHHHHHhhcc-------ccEEEEEEec
Confidence 9999998776641 1 35677888999988765433 35455555554431 4566666655
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
| |. ..+.. .++....+...|.-+|+..|.+.+| +.+..-..+..+|||.++.|..+... .++.+.++.|
T Consensus 145 P--GF--GGQkF--me~mm~KV~~lR~kyp~l~ievDGG---v~~~ti~~~a~AGAN~iVaGsavf~a--~d~~~vi~~l 213 (224)
T KOG3111|consen 145 P--GF--GGQKF--MEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGA--ADPSDVISLL 213 (224)
T ss_pred C--CC--chhhh--HHHHHHHHHHHHHhCCCceEEecCC---cCcchHHHHHHcCCCEEEecceeecC--CCHHHHHHHH
Confidence 5 32 22111 4556677778888889888887754 33444456778999999999766643 4567777777
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 214 r~ 215 (224)
T KOG3111|consen 214 RN 215 (224)
T ss_pred HH
Confidence 65
No 203
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.08 E-value=0.3 Score=47.82 Aligned_cols=214 Identities=10% Similarity=0.042 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-----CCchhHHHHHHHHHHhhhcCceEEE----eCCC--CC----HHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----GRKTNFNQILEYVKDIRDMGMEVCC----TLGM--LE----KHQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----ge~~~~~~l~~~i~~~k~~~~~i~~----~~g~--l~----~e~ 120 (320)
++.++++..+..+.+.|+..+-+.||-+... .| ..++++..+-+.+++..+.... -.|. .. +..
T Consensus 23 ~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~e-dpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~ 101 (596)
T PRK14042 23 MRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKE-DPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAF 101 (596)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCC-CHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHH
Confidence 7899999999999999999998876543211 11 1233333333334443444333 1233 22 336
Q ss_pred HHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCC
Q 020848 121 AIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHP 198 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~ 198 (320)
++..++.|+|.+.+.- . -.+.+....+++.+++.|..+...+.+ ....|.+.+.+.++.+.++| +
T Consensus 102 v~~a~~~Gidv~Rifd--------~---lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G--a 168 (596)
T PRK14042 102 VKLAVNNGVDVFRVFD--------A---LNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG--C 168 (596)
T ss_pred HHHHHHcCCCEEEEcc--------c---CcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC--C
Confidence 6667888998877631 1 235556677899999999886655433 33679999999999999998 5
Q ss_pred CeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cC
Q 020848 199 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TT 275 (320)
Q Consensus 199 ~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~ 275 (320)
+.|.+ ++|. ....+.+..+++...+..++ ..+.+-+ ...++.......++.+||+.+-..- ++- .+
T Consensus 169 d~I~I------kDta----G~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~t 237 (596)
T PRK14042 169 DSIAI------KDMA----GLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGA 237 (596)
T ss_pred CEEEe------CCcc----cCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCC
Confidence 55443 2321 23567777788877776554 2222210 0112222233567899999872210 011 13
Q ss_pred CCCChhHHHHHHHHcCCCc
Q 020848 276 PNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 276 ~~~~~~~~~~~i~~~G~~p 294 (320)
+.++.++++.+++..|+..
T Consensus 238 Gn~~tE~lv~~L~~~g~~t 256 (596)
T PRK14042 238 SHPPTEALVAALTDTPYDT 256 (596)
T ss_pred CcHhHHHHHHHHHhcCCCC
Confidence 4567888888888888754
No 204
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.96 E-value=0.2 Score=42.76 Aligned_cols=196 Identities=13% Similarity=0.122 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHh-hhcCce--EEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDI-RDMGME--VCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~-k~~~~~--i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++-.+.++++.+.+.|++.+++ -.|..-+. -..=+.+++.++.. .+..+. +++.+ .+..++.+.++|.|
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn--~tfg~~~i~~i~~~~~~~~~dvHLMv~~---p~~~i~~~~~~gad 83 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPN--LTFGAPICKALRDYGITAPIDVHLMVKP---VDRIIPDFAKAGAS 83 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCc--cccCHHHHHHHHHhCCCCCEEEEeccCC---HHHHHHHHHHhCCC
Confidence 35667888888888899988876 33221110 01114555555544 122222 33332 46778999999999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.+.+..|+.+ ...+.++..++.|++. ++.+..+-..+.+...+. . ++.+-++...|
T Consensus 84 ~i~~H~Ea~~-------------~~~~~l~~ik~~g~k~--GlalnP~Tp~~~i~~~l~---~----~D~vlvMtV~P-- 139 (220)
T PRK08883 84 MITFHVEASE-------------HVDRTLQLIKEHGCQA--GVVLNPATPLHHLEYIMD---K----VDLILLMSVNP-- 139 (220)
T ss_pred EEEEcccCcc-------------cHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHHH---h----CCeEEEEEecC--
Confidence 9999888631 1346677888888765 444433434444444443 2 45666776655
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
|+.-+..-+... ..+..+|.+.+. ..+.+.+ ++..+.-.....+||+.++.|..+.. ..++.+.++.
T Consensus 140 GfgGq~fi~~~l----ekI~~l~~~~~~~~~~~~I~vdG---GI~~eni~~l~~aGAd~vVvGSaIf~--~~d~~~~i~~ 210 (220)
T PRK08883 140 GFGGQSFIPHTL----DKLRAVRKMIDESGRDIRLEIDG---GVKVDNIREIAEAGADMFVAGSAIFG--QPDYKAVIDE 210 (220)
T ss_pred CCCCceecHhHH----HHHHHHHHHHHhcCCCeeEEEEC---CCCHHHHHHHHHcCCCEEEEeHHHhC--CCCHHHHHHH
Confidence 543222222222 233334444332 2233322 34444445677899999988864432 2245555554
Q ss_pred HHH
Q 020848 287 FKV 289 (320)
Q Consensus 287 i~~ 289 (320)
+++
T Consensus 211 l~~ 213 (220)
T PRK08883 211 MRA 213 (220)
T ss_pred HHH
Confidence 443
No 205
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=96.65 E-value=0.36 Score=41.37 Aligned_cols=196 Identities=15% Similarity=0.153 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
++-.+.++++.+.. |++.+++ -.|..-+. -..=..+++.++...+. ++.+++.+ .+..++.+.++|.|.|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN--~tfg~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~i 86 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHFVPN--LTLSPFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFI 86 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCccCCC--cccCHHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEE
Confidence 44567777777766 8888776 33321110 01113455555543222 23334443 4678999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+.. ....+.++.+++.|++. ++.+..+-..+.+...+.. ++.|-++.-.| |.
T Consensus 87 t~H~Ea~~------------~~~~~~i~~Ik~~G~ka--GlalnP~T~~~~l~~~l~~-------vD~VLvMsV~P--Gf 143 (229)
T PRK09722 87 TLHPETIN------------GQAFRLIDEIRRAGMKV--GLVLNPETPVESIKYYIHL-------LDKITVMTVDP--GF 143 (229)
T ss_pred EECccCCc------------chHHHHHHHHHHcCCCE--EEEeCCCCCHHHHHHHHHh-------cCEEEEEEEcC--CC
Confidence 99888641 11246678888889765 4444444444555544432 35666776655 43
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCc-cccCCCCChhHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEK-LLTTPNNDFDADQLMF 287 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~-~~~~~~~~~~~~~~~i 287 (320)
.-+ + . ..+.+..++.+|.+.+. ..|.+.+ ++..+.-.....+|||.++.|.. +.. ...+..+.++.+
T Consensus 144 ~GQ--~-f-i~~~l~KI~~lr~~~~~~~~~~~IeVDG---GI~~~~i~~~~~aGad~~V~Gss~iF~-~~~d~~~~i~~l 215 (229)
T PRK09722 144 AGQ--P-F-IPEMLDKIAELKALRERNGLEYLIEVDG---SCNQKTYEKLMEAGADVFIVGTSGLFN-LDEDIDEAWDIM 215 (229)
T ss_pred cch--h-c-cHHHHHHHHHHHHHHHhcCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEEChHHHcC-CCCCHHHHHHHH
Confidence 311 1 1 22334445555555443 2344443 33444445678899999988842 322 122355555555
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 216 ~~ 217 (229)
T PRK09722 216 TA 217 (229)
T ss_pred HH
Confidence 44
No 206
>PLN02321 2-isopropylmalate synthase
Probab=96.26 E-value=1.4 Score=43.66 Aligned_cols=221 Identities=17% Similarity=0.136 Sum_probs=126.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c---C-ceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M---G-MEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~---~-~~i~~~~g~l~~e~l~~L~~aG 128 (320)
..++.|+-++.++.+.+.|++.|-++. +..+ |..++.+-.+.+.++. . + +...+..+....+.++.-.+++
T Consensus 103 ~~~s~eeKl~Ia~~L~~lGVd~IEvGf---P~~S-p~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al 178 (632)
T PLN02321 103 ATLTSKEKLDIARQLAKLGVDIIEAGF---PIAS-PDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAV 178 (632)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC---cCCC-ccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHh
Confidence 338999999999999999999998753 1112 3334443333333221 1 1 1222233444566777766663
Q ss_pred c----CeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCe
Q 020848 129 L----TAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN-VCSGGIIGLGEAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 129 l----d~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~ 200 (320)
. .+|.+.+-+.+ -...+++.. ...+...+.++.+++.|.. +..+.-.+..-+.+.+.+.++.+.+.| ++.
T Consensus 179 ~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aG--a~~ 256 (632)
T PLN02321 179 KHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAG--ATT 256 (632)
T ss_pred cCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcC--CCE
Confidence 2 25666665553 223333322 2455566778888888874 555554444446777888999999888 554
Q ss_pred eeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC--C-cccccChhHHHHHHHcCCceE---eeCCccc
Q 020848 201 VPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS--A-GRVRFSMPEQALCFLAGANSI---FTGEKLL 273 (320)
Q Consensus 201 v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~--~-g~~~~~~~~~~~~~~~Gan~~---~~~~~~~ 273 (320)
+.+ ++|- ....+.++.+++...+..+|.. .+.++ + .-.++--.....++.+||..+ +.|-+ .
T Consensus 257 I~L------~DTv----G~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlG-E 325 (632)
T PLN02321 257 LNI------PDTV----GYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIG-E 325 (632)
T ss_pred EEe------cccc----cCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc-c
Confidence 433 3442 2345778888888877776642 12221 1 001111122356889999987 33321 2
Q ss_pred cCCCCChhHHHHHHHHcC
Q 020848 274 TTPNNDFDADQLMFKVLG 291 (320)
Q Consensus 274 ~~~~~~~~~~~~~i~~~G 291 (320)
.++..+.++++-+++..|
T Consensus 326 RaGNa~LEevv~~L~~~~ 343 (632)
T PLN02321 326 RAGNASLEEVVMAIKCRG 343 (632)
T ss_pred cccCccHHHHHHHHHhcc
Confidence 355667777777776643
No 207
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.19 E-value=0.049 Score=45.81 Aligned_cols=178 Identities=18% Similarity=0.188 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhHHHHHHHHHHhhhcCce--EEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNFNQILEYVKDIRDMGME--VCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~--i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
++-.+.++++.+.+.|++.+++ -.|..-+. -..-.++++.++...+..+. +++.+ ....++.++++|.+.+
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn--~~~g~~~i~~i~~~~~~~~DvHLMv~~---P~~~i~~~~~~g~~~i 84 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN--LTFGPDIIKAIRKITDLPLDVHLMVEN---PERYIEEFAEAGADYI 84 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS--B-B-HHHHHHHHTTSSSEEEEEEESSS---GGGHHHHHHHHT-SEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecccccCCc--ccCCHHHHHHHhhcCCCcEEEEeeecc---HHHHHHHHHhcCCCEE
Confidence 3446677778888899998876 33322111 11224555555544322222 33332 3568999999999999
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+..|+. ... .+.++.+++.|+++++. +..+...+.+. .++. . ++.|-++.-.| |.
T Consensus 85 ~~H~E~~----------~~~---~~~i~~ik~~g~k~Gia--lnP~T~~~~~~---~~l~-~---vD~VlvMsV~P--G~ 140 (201)
T PF00834_consen 85 TFHAEAT----------EDP---KETIKYIKEAGIKAGIA--LNPETPVEELE---PYLD-Q---VDMVLVMSVEP--GF 140 (201)
T ss_dssp EEEGGGT----------TTH---HHHHHHHHHTTSEEEEE--E-TTS-GGGGT---TTGC-C---SSEEEEESS-T--TT
T ss_pred EEcccch----------hCH---HHHHHHHHHhCCCEEEE--EECCCCchHHH---HHhh-h---cCEEEEEEecC--CC
Confidence 9988753 122 45667788888776544 32332322222 1222 2 56777777655 53
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.-+. =.++.++.++.+|.+.+. ..+.+.+| +..+.......+|||.++.|.
T Consensus 141 ~Gq~----f~~~~~~KI~~l~~~~~~~~~~~~I~vDGG---I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 141 GGQK----FIPEVLEKIRELRKLIPENGLDFEIEVDGG---INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp SSB------HGGHHHHHHHHHHHHHHHTCGSEEEEESS---ESTTTHHHHHHHT--EEEESH
T ss_pred Cccc----ccHHHHHHHHHHHHHHHhcCCceEEEEECC---CCHHHHHHHHHcCCCEEEECH
Confidence 3211 123345555555555443 44555443 233334567789999998885
No 208
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.00 E-value=0.5 Score=41.89 Aligned_cols=135 Identities=18% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++++++.+..+.+.|+.-|-+++-.+-++.++ ..++++...|+.+++ .++.+ +......+.+++-.++|++
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~I--SIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWI--SVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeE--EEECCCHHHHHHHHHcCCC
Confidence 6899999999999999998888876443333222 245567778888773 35543 3345667777777777877
Q ss_pred eec-c-CccccHHHHh---hh-------C-C--C------CCH--------HHHHHHHHHHHHcCC---eeeeeEEEEeC
Q 020848 131 AYN-H-NLDTSREFYS---KI-------I-T--T------RSY--------DERLETLKHVREAGI---NVCSGGIIGLG 178 (320)
Q Consensus 131 ~v~-i-~let~~~~~~---~i-------~-~--~------~~~--------~~~l~~i~~a~~~Gi---~v~~~~i~Glg 178 (320)
.|+ + ++.. ++.++ .. + + + ..| +...+.++.+.+.|+ ++-++--+|++
T Consensus 113 iINDI~g~~d-~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~ 191 (282)
T PRK11613 113 IINDIRSLSE-PGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFG 191 (282)
T ss_pred EEEECCCCCC-HHHHHHHHHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcC
Confidence 663 1 2211 11111 11 0 0 0 011 233455666777888 46666666777
Q ss_pred CCHHHHHHHHHHHhc
Q 020848 179 EAEEDRVGLLHTLAT 193 (320)
Q Consensus 179 et~ed~~~~l~~l~~ 193 (320)
.+.++-.++++.+..
T Consensus 192 k~~~~n~~ll~~l~~ 206 (282)
T PRK11613 192 KNLSHNYQLLARLAE 206 (282)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777665555554433
No 209
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.92 E-value=1.8 Score=46.17 Aligned_cols=215 Identities=9% Similarity=0.023 Sum_probs=124.9
Q ss_pred CCCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEe----------CCCCCH
Q 020848 55 LMTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCT----------LGMLEK 118 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~----------~g~l~~ 118 (320)
.++.++.+..+..+.+. |+..+-..||-+....-+ ..++.+-.+-+.+.+..+..+.. ++....
T Consensus 551 r~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~ 630 (1146)
T PRK12999 551 RVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVR 630 (1146)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHH
Confidence 37899999999999998 999988876532211101 12333333333333333333222 112345
Q ss_pred HHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE------e--CCCHHHHHHHHHH
Q 020848 119 HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG------L--GEAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G------l--get~ed~~~~l~~ 190 (320)
+.++...++|+|.+.+.. +. .+.+....+++.+++.|......+.+- . ..+.+-+.+.++.
T Consensus 631 ~~i~~a~~~Gid~~rifd-~l----------nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 631 AFVREAAAAGIDVFRIFD-SL----------NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred HHHHHHHHcCCCEEEEec-cC----------ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 568888999999988862 22 224446778888888886544443331 1 1477778888888
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeC
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
+.++| ++.+.+ ++|. ....+.+..+++...|..++ ..+.+-+ ...++....-..++.+||+.+-..
T Consensus 700 l~~~G--a~~i~i------kDt~----G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 700 LEKAG--AHILAI------KDMA----GLLKPAAAYELVSALKEEVD-LPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred HHHcC--CCEEEE------CCcc----CCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 99888 554443 2321 23567778888887776552 2222211 001222223356889999987221
Q ss_pred -Cccc-cCCCCChhHHHHHHHHcCCC
Q 020848 270 -EKLL-TTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 270 -~~~~-~~~~~~~~~~~~~i~~~G~~ 293 (320)
.++- .++.++.++++.+++..|+.
T Consensus 767 v~glg~~tgn~~le~vv~~L~~~~~~ 792 (1146)
T PRK12999 767 VASMSGLTSQPSLNSIVAALEGTERD 792 (1146)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCC
Confidence 0011 24556788888888877664
No 210
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.74 E-value=0.9 Score=41.75 Aligned_cols=215 Identities=12% Similarity=0.115 Sum_probs=123.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----CceEE----EeCCC--CCHHH----H
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVC----CTLGM--LEKHQ----A 121 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~~~i~----~~~g~--l~~e~----l 121 (320)
+..|+++-.++.+.+.|+.++-+-||-+...--..+-++=++.++++|+. .+... -..|. -.++. +
T Consensus 25 mrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv 104 (472)
T COG5016 25 MRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFV 104 (472)
T ss_pred HhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHH
Confidence 67899999999999999988877554221100001123344555555531 22211 11232 23444 4
Q ss_pred HHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--CCCHHHHHHHHHHHhcCCCCCC
Q 020848 122 IELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--GEAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 122 ~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~l~~l~~~~~ 199 (320)
+.-.+.|+|.+.+ |+.++ +......+++.+++.|.++...+.+-. -.|.+-+.++++.+.+++ ++
T Consensus 105 ~ka~~nGidvfRi--------FDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g--~D 171 (472)
T COG5016 105 EKAAENGIDVFRI--------FDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG--VD 171 (472)
T ss_pred HHHHhcCCcEEEe--------chhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC--CC
Confidence 4445567776655 44443 333346777888888988665555544 579999999999999998 77
Q ss_pred eeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC-ccc-cCC
Q 020848 200 SVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE-KLL-TTP 276 (320)
Q Consensus 200 ~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~-~~~-~~~ 276 (320)
+|.|-- ++ ...++.+.+.++...+..++- .+.+-+ ...++-.-....++.+|++.+-+-. .+. .+.
T Consensus 172 SIciKD--------ma--GlltP~~ayelVk~iK~~~~~-pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gts 240 (472)
T COG5016 172 SICIKD--------MA--GLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTS 240 (472)
T ss_pred EEEeec--------cc--ccCChHHHHHHHHHHHHhcCC-eeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCC
Confidence 776632 11 235677778888888877772 222211 1122322333567889998773221 011 123
Q ss_pred CCChhHHHHHHHHcCCCc
Q 020848 277 NNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 277 ~~~~~~~~~~i~~~G~~p 294 (320)
.+..+-++..++..||..
T Consensus 241 qP~tEtmv~aL~gt~yDt 258 (472)
T COG5016 241 QPATETMVAALRGTGYDT 258 (472)
T ss_pred CCcHHHHHHHhcCCCCCc
Confidence 345566666666655544
No 211
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.65 E-value=0.79 Score=40.15 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
.++.+++++.+....+.|+.-|-+++....++.. ...++++..+++.+++. ++++ +......+.+++-.++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~pl--SIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLI--SVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcE--EEeCCCHHHHHHHHHhCC
Confidence 3789999999999999999888887533222221 23455677777777743 5544 334566777777777787
Q ss_pred Ceec
Q 020848 130 TAYN 133 (320)
Q Consensus 130 d~v~ 133 (320)
+.|+
T Consensus 98 ~iIN 101 (257)
T cd00739 98 DIIN 101 (257)
T ss_pred CEEE
Confidence 7665
No 212
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.61 E-value=1.4 Score=38.48 Aligned_cols=204 Identities=13% Similarity=0.101 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
++.++.+.+.|++.+++..-.... .....-+++++.+. ..++++....|..+.+.++++.++|++.+.++-...
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~----~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~- 107 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASS----EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV- 107 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccc----ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh-
Confidence 334455566899999986532221 12233455666665 357888899999999999999999999998875443
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-------------EEEe--CCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGINVCSGG-------------IIGL--GEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-------------i~Gl--get~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
.+++...+..+..-...+-+.+++ .+-. ..+..+..+.++.+.+.| ++.+-+..
T Consensus 108 ---------~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G--~~~iivt~ 176 (254)
T TIGR00735 108 ---------KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLG--AGEILLTS 176 (254)
T ss_pred ---------hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcC--CCEEEEeC
Confidence 112211221222110012222321 1111 123456778888888887 66666654
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcC-CceEeeCCccccCCCCChhHHH
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQ 284 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~G-an~~~~~~~~~~~~~~~~~~~~ 284 (320)
... .|+ .+.++.+. ++. .+...+- .+-.++|-.+ .+.-...+..| ++.++.|. .+..+..++++..
T Consensus 177 i~~-~g~----~~g~~~~~-~~~---i~~~~~i-pvia~GGi~s--~~di~~~~~~g~~dgv~~g~-a~~~~~~~~~~~~ 243 (254)
T TIGR00735 177 MDK-DGT----KSGYDLEL-TKA---VSEAVKI-PVIASGGAGK--PEHFYEAFTKGKADAALAAS-VFHYREITIGEVK 243 (254)
T ss_pred cCc-ccC----CCCCCHHH-HHH---HHHhCCC-CEEEeCCCCC--HHHHHHHHHcCCcceeeEhH-HHhCCCCCHHHHH
Confidence 322 343 12233322 222 2222222 2222332222 22223455556 88888886 4444567899999
Q ss_pred HHHHHcCCCc
Q 020848 285 LMFKVLGLTP 294 (320)
Q Consensus 285 ~~i~~~G~~p 294 (320)
+.+++.|+.+
T Consensus 244 ~~~~~~gi~~ 253 (254)
T TIGR00735 244 EYLAERGIPV 253 (254)
T ss_pred HHHHHCCCcc
Confidence 9999999864
No 213
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.59 E-value=1.3 Score=38.01 Aligned_cols=200 Identities=16% Similarity=0.183 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE--ecccCCCCCCchhH-HHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCM--GAAWRDTIGRKTNF-NQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l--~~g~~~~~ge~~~~-~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~ 131 (320)
.++-.+.++++.+.+.|++.+++ -.|...+. ..+ ..+++.++... ..+.+.+..-. -....++.+.++|+|.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn---~~~G~~~v~~lr~~~-~~~~lDvHLm~~~p~~~i~~~~~~Gad~ 91 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPN---LSFGPPVVKSLRKHL-PNTFLDCHLMVSNPEKWVDDFAKAGASQ 91 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCC---cCcCHHHHHHHHhcC-CCCCEEEEECCCCHHHHHHHHHHcCCCE
Confidence 45667888888888999988876 33221111 111 23333333321 02222222111 2456788999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++.+ ....++++.+++.|..+++.+. .....+++...+ . .+ .++.|-+.... ||
T Consensus 92 itvH~ea~~------------~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l---~-~~-~vD~Vl~m~v~--pG 150 (228)
T PTZ00170 92 FTFHIEATE------------DDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLI---D-TD-LVDMVLVMTVE--PG 150 (228)
T ss_pred EEEeccCCc------------hHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHH---c-cc-hhhhHHhhhcc--cC
Confidence 998776531 1135677788888876654433 233444544332 1 11 13344443333 34
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
..-.. .. ...+..+...|...+...+.+.+| +....-.....+|++.++.|. .++. ..++.+.++.+++
T Consensus 151 ~~gq~---~~-~~~~~ki~~~~~~~~~~~I~VdGG---I~~~ti~~~~~aGad~iVvGs-aI~~-a~d~~~~~~~i~~ 219 (228)
T PTZ00170 151 FGGQS---FM-HDMMPKVRELRKRYPHLNIQVDGG---INLETIDIAADAGANVIVAGS-SIFK-AKDRKQAIELLRE 219 (228)
T ss_pred CCCcE---ec-HHHHHHHHHHHHhcccCeEEECCC---CCHHHHHHHHHcCCCEEEEch-HHhC-CCCHHHHHHHHHH
Confidence 33111 11 222333444555666555555543 344444567789999999886 3443 2346666665554
No 214
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=95.41 E-value=1.6 Score=37.79 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+++..-+..-.+.+. -.++++.++ ..++++....|..+.+.++.+.+.|++.+.++-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~----~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~ 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRET----MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAA 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcc----cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchh
Confidence 4444555566789999888643221111122 345555665 35688889999999999999999999988776422
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE--------e----CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG--------L----GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G--------l----get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
. .+++...+..+.+.+..+.+.+++-.+ . .++..+..+.++.+.+.| ++.+-+...
T Consensus 104 ~----------~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G--~d~i~v~~i 171 (243)
T cd04731 104 V----------ENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSM 171 (243)
T ss_pred h----------hChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCC--CCEEEEecc
Confidence 2 123333333333322223333332211 1 234456677778888887 666666654
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHc-CCceEeeCCccccCCCCChhHHHH
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQL 285 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~-Gan~~~~~~~~~~~~~~~~~~~~~ 285 (320)
.. .||. +....+ +++.+ +...+-+ +-.++|-.+ ++.-...+.. |++.++.|. .+..+..+.++..+
T Consensus 172 ~~-~g~~----~g~~~~-~i~~i---~~~~~~p-via~GGi~~--~~di~~~l~~~g~dgv~vg~-al~~~~~~~~~~~~ 238 (243)
T cd04731 172 DR-DGTK----KGYDLE-LIRAV---SSAVNIP-VIASGGAGK--PEHFVEAFEEGGADAALAAS-IFHFGEYTIAELKE 238 (243)
T ss_pred CC-CCCC----CCCCHH-HHHHH---HhhCCCC-EEEeCCCCC--HHHHHHHHHhCCCCEEEEeH-HHHcCCCCHHHHHH
Confidence 32 2332 122222 22222 2222222 222222111 2222334554 899998886 33344456777666
Q ss_pred HHHH
Q 020848 286 MFKV 289 (320)
Q Consensus 286 ~i~~ 289 (320)
.+++
T Consensus 239 ~~~~ 242 (243)
T cd04731 239 YLAE 242 (243)
T ss_pred HHhh
Confidence 6554
No 215
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.40 E-value=1.5 Score=37.29 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.+.+++.+.++.+.+.|++.+.+.+-.....| -.+.++.+++ .++++..-.+..+.+.++.+.++|.|.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g-------~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQG-------SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCC-------CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 45567778888888899999988643222222 2234444442 366766555667888999999999999988
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
+.... +.+...+.++.+...|+.+ ++.. .+++++. .+.+++ ++.+.+. +..++.+
T Consensus 101 ~~~~~-----------~~~~~~~~~~~~~~~g~~~----~v~v-~~~~e~~----~~~~~g--~~~i~~t---~~~~~~~ 155 (217)
T cd00331 101 IVAAL-----------DDEQLKELYELARELGMEV----LVEV-HDEEELE----RALALG--AKIIGIN---NRDLKTF 155 (217)
T ss_pred eeccC-----------CHHHHHHHHHHHHHcCCeE----EEEE-CCHHHHH----HHHHcC--CCEEEEe---CCCcccc
Confidence 65332 1233445556666667665 3333 2556643 344455 5666544 3333332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 215 QDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.++.+. +...+..+| +..+-..+| .+ .++.-.....+|++.++.|..+.
T Consensus 156 ----~~~~~~----~~~l~~~~~~~~pvia~gG-I~-s~edi~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 156 ----EVDLNT----TERLAPLIPKDVILVSESG-IS-TPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred ----CcCHHH----HHHHHHhCCCCCEEEEEcC-CC-CHHHHHHHHHcCCCEEEECHHHc
Confidence 223322 222333343 222222222 11 12333556778999998887544
No 216
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.19 E-value=1.9 Score=37.53 Aligned_cols=205 Identities=14% Similarity=0.169 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR 140 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~ 140 (320)
.+.++.+.+.|++.+++.+-+....+. +.-+++++.++ ..++++....|..+.+.++++.+.|++.+.++-...
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~~----~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l- 107 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEGR----DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAV- 107 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccC----cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHh-
Confidence 334444557899999987633211122 33455566665 457888899999999999999999999988864222
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----------EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 141 EFYSKIITTRSYDERLETLKHVREAGINVCSGG----------IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 141 ~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----------i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
+ +++...+..+...+..+-+.+++ +.-.+ .+..+..+.++.+.+.| ++.+.+....
T Consensus 108 ---~------~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g--~~~ii~~~i~ 176 (253)
T PRK02083 108 ---A------NPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG--AGEILLTSMD 176 (253)
T ss_pred ---h------CcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC--CCEEEEcCCc
Confidence 1 12222222222111112222221 11011 12224566666777776 5555444332
Q ss_pred ecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHH-cCCceEeeCCccccCCCCChhHHHHH
Q 020848 208 AVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 208 p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~-~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
. .||. . .++. ..+...+...+-+ +-.++|-.+. .+. ...+. .|++.++.|. .+..+.-++++..+.
T Consensus 177 ~-~g~~-~---g~d~----~~i~~~~~~~~ip-via~GGv~s~-~d~-~~~~~~~G~~gvivg~-al~~~~~~~~~~~~~ 243 (253)
T PRK02083 177 R-DGTK-N---GYDL----ELTRAVSDAVNVP-VIASGGAGNL-EHF-VEAFTEGGADAALAAS-IFHFGEITIGELKAY 243 (253)
T ss_pred C-CCCC-C---CcCH----HHHHHHHhhCCCC-EEEECCCCCH-HHH-HHHHHhCCccEEeEhH-HHHcCCCCHHHHHHH
Confidence 1 2332 1 1222 2222222233322 2223322221 222 33454 5999999887 444566789999999
Q ss_pred HHHcCCCcC
Q 020848 287 FKVLGLTPK 295 (320)
Q Consensus 287 i~~~G~~p~ 295 (320)
+++.|+.+.
T Consensus 244 ~~~~~~~~~ 252 (253)
T PRK02083 244 LAEQGIPVR 252 (253)
T ss_pred HHHCCCccc
Confidence 999998653
No 217
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.12 E-value=2 Score=41.27 Aligned_cols=223 Identities=12% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c--Cce--EEEeCCC-CCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M--GME--VCCTLGM-LEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~--~~~--i~~~~g~-l~~e~l~~L~~aGl 129 (320)
.+++.+++.++.+.++|++.|+|-. +.| -..-..+.++++.+|+ . +++ +++++.. +.....-.-.++|+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~IkD----taG-ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGa 226 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIKD----MAA-LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGV 226 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----Ccc-CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCC
Confidence 4789999999999999999999942 222 1233566777777763 3 344 3444332 33344444568899
Q ss_pred CeeccCccccHHHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 130 TAYNHNLDTSREFYSKIITT-RSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
|.|..++.+..+ +.+ -+.+.++..++ ..|+++++++-- +.+-.+.+.........+......+....+.+
T Consensus 227 d~vDtai~Glg~-----~aGn~atE~vv~~L~---~~g~~tgiDl~~-L~~i~~~~~~vr~~y~~~~~~~~~~d~~v~~~ 297 (499)
T PRK12330 227 DVVDTAISSMSL-----GPGHNPTESLVEMLE---GTGYTTKLDMDR-LLKIRDHFKKVRPKYKEFESKTTGVETEIFKS 297 (499)
T ss_pred CEEEeecccccc-----cccchhHHHHHHHHH---hcCCCCCCCHHH-HHHHHHHHHHHHHHHhcccccccCCCCccccC
Confidence 999888877511 112 24555555554 446554433211 11111111222222222211122223334444
Q ss_pred -cCCCCCCCC-------C-CCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEee--------CCc
Q 020848 209 -VKGTPLQDQ-------K-PVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT--------GEK 271 (320)
Q Consensus 209 -~~gt~~~~~-------~-~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~--------~~~ 271 (320)
+||--+.+. . .--.+++++.+...|..+.....-...+ .+........+..|-..+++ |.
T Consensus 298 qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~S--qivg~qA~~nv~~gry~~~~~e~~~~~~G~- 374 (499)
T PRK12330 298 QIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPSS--QIVGTQAVFNVLMGRYKVLTGEFADLMLGY- 374 (499)
T ss_pred CCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCCCeeCChh--HHHHHHHHHHHHcCccccCCHHHHHHhCcC-
Confidence 566444322 1 1224567777777787776543222211 11122223333444222222 22
Q ss_pred cccCCCCChhHHHHHHHH-cCCCcC
Q 020848 272 LLTTPNNDFDADQLMFKV-LGLTPK 295 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~-~G~~p~ 295 (320)
|-..+++-.+++++.+.+ .|-+|.
T Consensus 375 yG~~p~~~~~e~~~~~~~~~~~~~~ 399 (499)
T PRK12330 375 YGETPGERNPEVVEQAKKQAKKEPI 399 (499)
T ss_pred CCCCCCCCCHHHHHHHHhhCCCCCC
Confidence 334455566677777764 465554
No 218
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.00 E-value=1.4 Score=37.88 Aligned_cols=196 Identities=14% Similarity=0.103 Sum_probs=105.2
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHH
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSRE 141 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~ 141 (320)
.+.++...+.|++.++++.=+--..|.+...+.+.++++ ....++.+-.|..+.+.++.|.++|++++.++--.
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~---~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a--- 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE---ATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA--- 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHH---hCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce---
Confidence 444556677899999886422111244445444444444 34677888889999999999999999999987533
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCee--eeeE----EEEeCC---CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 142 FYSKIITTRSYDERLETLKHVREAGINV--CSGG----IIGLGE---AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 142 ~~~~i~~~~~~~~~l~~i~~a~~~Gi~v--~~~~----i~Glge---t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
-.+++.+.+.+ ++.|-++ .++. +...|. +.-++.++++.+.+.| ..++ ++.-+-..||
T Consensus 108 -------v~~p~~v~~~~---~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g--~~~i-i~TdI~~DGt 174 (241)
T COG0106 108 -------VKNPDLVKELC---EEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVG--LAHI-LYTDISRDGT 174 (241)
T ss_pred -------ecCHHHHHHHH---HHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcC--CCeE-EEEecccccc
Confidence 23444444333 3344222 2221 111121 2235677788888876 4433 3333444566
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHc-CCceEeeCCccccCCCCChhHHHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLA-GANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~-Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
- ..++.+-+.++.... +..+..++|-.++. +. ...-.. |+..++.|..+. .+.-++.+.++..+
T Consensus 175 l----~G~n~~l~~~l~~~~-----~ipviaSGGv~s~~-Di-~~l~~~~G~~GvIvG~ALy-~g~~~l~ea~~~~~ 239 (241)
T COG0106 175 L----SGPNVDLVKELAEAV-----DIPVIASGGVSSLD-DI-KALKELSGVEGVIVGRALY-EGKFTLEEALACVR 239 (241)
T ss_pred c----CCCCHHHHHHHHHHh-----CcCEEEecCcCCHH-HH-HHHHhcCCCcEEEEehHHh-cCCCCHHHHHHHHh
Confidence 4 234444333333322 22333454433332 22 112223 788888886433 34455666665544
No 219
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=94.95 E-value=2.5 Score=37.50 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHcC-----CCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAG-----STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-----~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
++.++=++.++.+.+.| ++.|-+.+. . +...+.+.++++...+ ...+... .....+.+++..++|++
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~-----~-~~d~~~v~~~~~~~~~-~~~v~~~-~r~~~~die~A~~~g~~ 89 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIRQTEFFLY-----T-EKDREAVEACLDRGYK-FPEVTGW-IRANKEDLKLVKEMGLK 89 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccceEEecCc-----C-hHHHHHHHHHHHcCCC-CCEEEEE-ecCCHHHHHHHHHcCcC
Confidence 48999999999999999 999876321 1 2233333333321100 1234333 44567888999999999
Q ss_pred eeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCH-H----HHHHHHHHHhcCCCCCC-e
Q 020848 131 AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGINVCSGGIIGL-GEAE-E----DRVGLLHTLATLPTHPE-S 200 (320)
Q Consensus 131 ~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~-e----d~~~~l~~l~~l~~~~~-~ 200 (320)
.+.+.+-+++ -..+.+++. ...+...+.++.+++.|+.+..++ -|- ..+. + -+.++++.+.+.| ++ .
T Consensus 90 ~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~-ed~~r~d~~~~v~~~~~~~~~~~~~~G--~~~~ 166 (279)
T cd07947 90 ETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL-EDITRADIYGFVLPFVNKLMKLSKESG--IPVK 166 (279)
T ss_pred EEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE-EcccCCCcccchHHHHHHHHHHHHHCC--CCEE
Confidence 9999886663 344455433 256667778888888898876554 222 1111 1 1233444444466 44 3
Q ss_pred eeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHHh--CCCceeec--CCcccccChhHHHHHHHcCCceEe---eCCc
Q 020848 201 VPINALLAVK--GTPLQDQKPVEIWEMIRMIATARIV--MPKAMVRL--SAGRVRFSMPEQALCFLAGANSIF---TGEK 271 (320)
Q Consensus 201 v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~~--~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~---~~~~ 271 (320)
+++- -.- .+|+.. ..-++++.+++...+.. +|...+.+ -.. .++.-.....++.+|+..+- .|-+
T Consensus 167 i~l~---DTvG~a~P~~~--~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~-~Gla~AN~laA~~aG~~~vd~sv~GlG 240 (279)
T cd07947 167 IRLC---DTLGYGVPYPG--ASLPRSVPKIIYGLRKDCGVPSENLEWHGHND-FYKAVANAVAAWLYGASWVNCTLLGIG 240 (279)
T ss_pred EEec---cCCCcCCcccc--ccchHHHHHHHHHHHHhcCCCCceEEEEecCC-CChHHHHHHHHHHhCCCEEEEeccccc
Confidence 3331 111 233211 12246666777766655 34322221 110 11112233568899998872 2221
Q ss_pred cccCCCCChhHHHHHHHHc-CCCc
Q 020848 272 LLTTPNNDFDADQLMFKVL-GLTP 294 (320)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~~-G~~p 294 (320)
..++....++++.+++.+ |+.+
T Consensus 241 -e~aGN~~tE~lv~~l~~~~g~~t 263 (279)
T cd07947 241 -ERTGNCPLEAMVIEYAQLKGNFD 263 (279)
T ss_pred -ccccchhHHHHHHHHHHhcCCCC
Confidence 235567888999999988 8753
No 220
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=94.93 E-value=2.2 Score=36.88 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..-+.. .|.+.. .++++++. ..++++.+-.|..+.|.++.+.++|++.+.++-..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g~~~n----~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA-FGRGSN----RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc-CCCCcc----HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchH
Confidence 4445666677799999998753221 232222 35555554 44688889999999999999999999998887544
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----EE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----II--GLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
. .+++.+.+.++...+. +-+.+++ +. |..++..+..+.++.+.+.| +..+-+..-.. .|+
T Consensus 108 l----------~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G--~~~iiv~~~~~-~g~ 173 (241)
T PRK14024 108 L----------ENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG--CSRYVVTDVTK-DGT 173 (241)
T ss_pred h----------CCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC--CCEEEEEeecC-CCC
Confidence 3 1222222333333221 2122221 11 22233445677777788887 66666654432 233
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHH-HHH-HcCCceEeeCCccccCCCCChhHHHHH
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQA-LCF-LAGANSIFTGEKLLTTPNNDFDADQLM 286 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~-~~~-~~Gan~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
- ..++.+.+.++. ...+ ..+-.++|-.+. .+... ..+ ..|++.++.|..++ .+.-+.++..+.
T Consensus 174 ~----~G~d~~~i~~i~----~~~~-ipviasGGi~s~-~D~~~l~~~~~~GvdgV~igra~~-~g~~~~~~~~~~ 238 (241)
T PRK14024 174 L----TGPNLELLREVC----ARTD-APVVASGGVSSL-DDLRALAELVPLGVEGAIVGKALY-AGAFTLPEALAV 238 (241)
T ss_pred c----cCCCHHHHHHHH----hhCC-CCEEEeCCCCCH-HHHHHHhhhccCCccEEEEeHHHH-cCCCCHHHHHHH
Confidence 2 223333322222 2222 122223322222 12111 111 35999998886333 344556665444
No 221
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=94.69 E-value=3.7 Score=38.23 Aligned_cols=191 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCH-HH-HHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEK-HQ-AIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~-e~-l~~L~~aGld~ 131 (320)
.+.++.++.++.+...++.-+-++. |+....=.+.++.+++.+ ..+.+..-..+. .. ++.+.++|.|.
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~--------~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~ 253 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGT--------PLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADA 253 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECH--------HHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCE
Confidence 4677777776665443332233321 333322256666766543 334433333222 22 67788889998
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++. .+...++++.+++.|+.+.++++ +. ++..+..+-+ ..+ ++.+-++.-+.. +
T Consensus 254 vTVH~ea~------------~~ti~~ai~~akk~GikvgVD~l-np-~tp~e~i~~l----~~~--vD~Vllht~vdp-~ 312 (391)
T PRK13307 254 VVISGLAP------------ISTIEKAIHEAQKTGIYSILDML-NV-EDPVKLLESL----KVK--PDVVELHRGIDE-E 312 (391)
T ss_pred EEEeccCC------------HHHHHHHHHHHHHcCCEEEEEEc-CC-CCHHHHHHHh----hCC--CCEEEEccccCC-C
Confidence 88865443 23346678889999977655433 22 3443333322 233 667766652221 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
+ . .+.. +.+...|.+..+..+.+.+| +..+.-.....+|++.++.|. .++. ..++.+.++.+++
T Consensus 313 ~---~--~~~~----~kI~~ikk~~~~~~I~VdGG---I~~eti~~l~~aGADivVVGs-aIf~-a~Dp~~aak~l~~ 376 (391)
T PRK13307 313 G---T--EHAW----GNIKEIKKAGGKILVAVAGG---VRVENVEEALKAGADILVVGR-AITK-SKDVRRAAEDFLN 376 (391)
T ss_pred c---c--cchH----HHHHHHHHhCCCCcEEEECC---cCHHHHHHHHHcCCCEEEEeH-HHhC-CCCHHHHHHHHHH
Confidence 1 1 1112 23333444444444555543 333444567789999998886 3332 2345555555544
No 222
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=94.35 E-value=2.7 Score=36.85 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aG 128 (320)
...+++++++.++...+.|+.-|-+++....++.++ ...+++...++.+++. ++++++ .....+.++.-.++|
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsi--DT~~~~vi~~al~~G 95 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISV--DTYRAEVARAALEAG 95 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--eCCCHHHHHHHHHcC
Confidence 337899999999999999999988864322222211 2334577777877754 666543 345567777666677
Q ss_pred cCeec
Q 020848 129 LTAYN 133 (320)
Q Consensus 129 ld~v~ 133 (320)
.+.|+
T Consensus 96 ~~iIN 100 (257)
T TIGR01496 96 ADIIN 100 (257)
T ss_pred CCEEE
Confidence 77654
No 223
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=94.27 E-value=6 Score=38.87 Aligned_cols=230 Identities=16% Similarity=0.034 Sum_probs=124.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEE--EeCCC-CCHHHHHHHHHhc
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVC--CTLGM-LEKHQAIELKKAG 128 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~--~~~g~-l~~e~l~~L~~aG 128 (320)
...++.++=++.++.+.+.|++.|-.+- ..+ . +...+.+.++++... ..+..++ ..+-. .-+..++.+..++
T Consensus 42 g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gf--p~~-s-~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~ 117 (564)
T TIGR00970 42 PDPMSPARKRRYFDLLVRIGFKEIEVGF--PSA-S-QTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAK 117 (564)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCC-C-HHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCC
Confidence 3448999999999999999999997752 211 2 233333433333210 0133332 21111 1123344444445
Q ss_pred cCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe------eeeeEEEEeC----CCHHHHHHHHHHHhcCC
Q 020848 129 LTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN------VCSGGIIGLG----EAEEDRVGLLHTLATLP 195 (320)
Q Consensus 129 ld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~------v~~~~i~Glg----et~ed~~~~l~~l~~l~ 195 (320)
.+.|.+.+-+.+ -....++.. ...+...+.++.+++.|.. ....+.++.. -+.+-+.++++.+.+.|
T Consensus 118 ~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag 197 (564)
T TIGR00970 118 RATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVW 197 (564)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhC
Confidence 457888877773 233333322 2345555566667777653 1224445442 24567788888888886
Q ss_pred CC-CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCce-eecC--C-cccccChhHHHHHHHcCCceEe---
Q 020848 196 TH-PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAM-VRLS--A-GRVRFSMPEQALCFLAGANSIF--- 267 (320)
Q Consensus 196 ~~-~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i~~~--~-g~~~~~~~~~~~~~~~Gan~~~--- 267 (320)
.. .+..... -+|+|- ....+.++.+++..++..+|... +.++ + .-.++--.....++.+||..+-
T Consensus 198 ~~~~~~~~~i---~l~DTv----G~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~ 270 (564)
T TIGR00970 198 APTPERPIIF---NLPATV----EMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCL 270 (564)
T ss_pred CCccCCeeEE---Eecccc----CccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeec
Confidence 21 1111111 234443 34567888888887777666432 2222 0 0011111233568899999872
Q ss_pred eCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 268 TGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.|-+ ..++....++++-++...|+.+
T Consensus 271 ~G~G-ERaGNa~le~lv~~L~~~g~~t 296 (564)
T TIGR00970 271 FGNG-ERTGNVDLVTLALNLYTQGVSP 296 (564)
T ss_pred CcCC-ccccCccHHHHHHHHHhcCCCC
Confidence 2221 1356678888888888877643
No 224
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=94.17 E-value=3.8 Score=36.21 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccC-CCCCCc-hhHHHHHHHHHHhhhc--CceEEEeCCC---CC-HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWR-DTIGRK-TNFNQILEYVKDIRDM--GMEVCCTLGM---LE-KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~-~~~ge~-~~~~~l~~~i~~~k~~--~~~i~~~~g~---l~-~e~l~~L~~a 127 (320)
.++|||.+.+....+.|..-+++-. + +..|.+ ...+.+.+.++.+++. ++.+..|.|. .+ ++.++.+...
T Consensus 23 ~tpeEia~~A~~c~~AGAa~vH~H~--R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~ 100 (272)
T PF05853_consen 23 ITPEEIAADAVACYEAGAAIVHIHA--RDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAW 100 (272)
T ss_dssp -SHHHHHHHHHHHHHHTESEEEE-E--E-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEeec--CCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhc
Confidence 7999999999999999998888743 3 333444 4567788888888843 6666666543 33 4455555543
Q ss_pred ccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
..|..+++.-+. -. ....--.++++...+.++.+++.|++....+ + +..++.....++++ |.-...+.+. |
T Consensus 101 ~pd~asl~~gs~n~~-~~~~~~~n~~~~~~~~~~~~~e~Gi~pe~ev-~----d~~~l~~~~~l~~~-G~l~~p~~~~-~ 172 (272)
T PF05853_consen 101 KPDMASLNPGSMNFG-TRDRVYINTPADARELARRMRERGIKPEIEV-F----DPGHLRNARRLIEK-GLLPGPLLVN-F 172 (272)
T ss_dssp --SEEEEE-S-EEES-GGCSEE---HHHHHHHHHHHHHTT-EEEEEE-S----SHHHHHHHHHHHHT-TSS-SSEEEE-E
T ss_pred CCCeEEecccccccc-cCCceecCCHHHHHHHHHHHHHcCCeEEEEE-E----cHHHHHHHHHHHHC-CCCCCCeEEE-E
Confidence 456665544332 11 0010113577888899999999998765442 2 45566555555443 4211222222 2
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEee-CCccccCCC-------C
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFT-GEKLLTTPN-------N 278 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~-~~~~~~~~~-------~ 278 (320)
.. |.+.. .+.+++.+..++..... +..+.+.+ .....-+....++..|.+.-+. +|.+....| .
T Consensus 173 vl--G~~~g--~~~~~~~l~~~l~~l~~---~~~w~v~~-~g~~~~~~~~~Ai~~GghvRVGlED~~~~~~G~~a~sNae 244 (272)
T PF05853_consen 173 VL--GVPGG--MPATPENLLAMLDMLPE---GAPWSVCG-IGRNQWPLLAAAIAMGGHVRVGLEDNLYLPDGELAPSNAE 244 (272)
T ss_dssp EE--S-TTS----S-HHHHHHHHHHHHH---TEEEEEEE--GGGHHHHHHHHHHTT-EEEESTTT-SEEETTEE-S-HHH
T ss_pred cc--cCCCC--CCCCHHHHHHHHHhcCC---CCcEEEEc-cchhhHHHHHHHHHcCCceEEecCccccCCCCCCCcCHHH
Confidence 22 43322 25667776666555443 33332221 1111112345677778774332 232211122 2
Q ss_pred ChhHHHHHHHHcCCCcCCCC
Q 020848 279 DFDADQLMFKVLGLTPKAPS 298 (320)
Q Consensus 279 ~~~~~~~~i~~~G~~p~~~~ 298 (320)
-++..+++++++|++|...+
T Consensus 245 lV~~a~~ia~~~grevAt~~ 264 (272)
T PF05853_consen 245 LVERAVRIARELGREVATPA 264 (272)
T ss_dssp HHHHHHHHHHHTT-EB--HH
T ss_pred HHHHHHHHHHHcCCCCCCHH
Confidence 26778899999999987653
No 225
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.09 E-value=0.077 Score=48.63 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-chhHHHHHHHHHHhhhcCceEE--EeCCC-----CCHHHHHHHHHhc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-KTNFNQILEYVKDIRDMGMEVC--CTLGM-----LEKHQAIELKKAG 128 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-~~~~~~l~~~i~~~k~~~~~i~--~~~g~-----l~~e~l~~L~~aG 128 (320)
+.++..+.++.+.+.|+++++.+- +.+.+. ....+.+-++++.+++.++++. +++.. .+.+.++.|++.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL--~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL--HIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-----------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC--CcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 578999999999999998876532 222222 2567888899999999998854 44432 2455688999999
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
++.+.++
T Consensus 90 i~~lRlD 96 (357)
T PF05913_consen 90 IDGLRLD 96 (357)
T ss_dssp -SEEEES
T ss_pred CCEEEEC
Confidence 9988875
No 226
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=93.96 E-value=3.6 Score=35.17 Aligned_cols=178 Identities=18% Similarity=0.225 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCC-CC---HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGM-LE---KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~-l~---~e~l~~L~~a 127 (320)
.+.++|.+.++.+.+.++..+|+. |.+.+...+.+ +..++.+.+- .|. .+ ....++..+.
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~---------p~~v~~a~~~l---~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~ 86 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVN---------PSYVKLAAELL---KGSDVKVCTVIGFPLGANTTAVKAFEAKDAIAN 86 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEC---------HHHHHHHHHHh---CCCCCeEEEEecccCCCChHHHHHHHHHHHHHc
Confidence 789999999999999999999873 33444433333 3344554322 232 12 3344555567
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
|.+.+.+-++-. .+ ...+|+.+.+-++.+++.--...+-+|+-. --+++++.+..+.+.+.| ++.|.-
T Consensus 87 GA~EiD~Vin~~-----~~-~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~ag--adfIKT--- 155 (221)
T PRK00507 87 GADEIDMVINIG-----AL-KSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAG--ADFVKT--- 155 (221)
T ss_pred CCceEeeeccHH-----Hh-cCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhC--CCEEEc---
Confidence 888777654321 11 134688888888887774212344555544 347788999999999888 553332
Q ss_pred eecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 207 LAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 207 ~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
+|-+. ....+.+....+.... -+...+..++|-.+. +.....+.+||+.+
T Consensus 156 ----sTG~~-~~gat~~~v~~m~~~~---~~~~~IKasGGIrt~--~~a~~~i~aGA~ri 205 (221)
T PRK00507 156 ----STGFS-TGGATVEDVKLMRETV---GPRVGVKASGGIRTL--EDALAMIEAGATRL 205 (221)
T ss_pred ----CCCCC-CCCCCHHHHHHHHHHh---CCCceEEeeCCcCCH--HHHHHHHHcCcceE
Confidence 33332 1234555433332222 233455555543332 33456678999988
No 227
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=4.8 Score=36.23 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEE--EeCCC-----CCHHHHHHHHHhcc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVC--CTLGM-----LEKHQAIELKKAGL 129 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~--~~~g~-----l~~e~l~~L~~aGl 129 (320)
+.++-.+.++.+.+.|+++|+-+-. .+.......+..+.++++.+++.|+.+. +++.. .+...+..+.+.|+
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~-~~~~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l~~f~e~G~ 92 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLL-IPEEDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNLSRFQELGV 92 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecc-cCCchHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHHHHHHHhhh
Confidence 3466777888999999998865321 1111112477889999999999998854 44443 36678999999999
Q ss_pred CeeccCcccc
Q 020848 130 TAYNHNLDTS 139 (320)
Q Consensus 130 d~v~i~let~ 139 (320)
+.+.++.-..
T Consensus 93 ~glRlD~gfS 102 (360)
T COG3589 93 DGLRLDYGFS 102 (360)
T ss_pred hheeecccCC
Confidence 9888765333
No 228
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=93.75 E-value=4.2 Score=35.56 Aligned_cols=75 Identities=12% Similarity=0.227 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC----CchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG----RKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g----e~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.+++++++.++...+.|++-|-++++...++. .....+.+..+++.+++. ++.+ +......+.++.-.++|.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~pi--SIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPI--SVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeE--EEeCCcHHHHHHHHHhCCC
Confidence 68999999999999999998888765443332 123446677778877743 5554 3344667777777777755
Q ss_pred ee
Q 020848 131 AY 132 (320)
Q Consensus 131 ~v 132 (320)
.|
T Consensus 99 iI 100 (258)
T cd00423 99 II 100 (258)
T ss_pred EE
Confidence 44
No 229
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=93.73 E-value=4.8 Score=35.83 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=125.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHHHHHh
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~L~~a 127 (320)
...+|.++=++.++.+.+.|++.+-++. +. .-+.-.+.++.+.+. +..+. .......+.++.-.++
T Consensus 17 g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf---P~-----~~~~e~e~~~~i~~~~~~~~~~~~~-al~r~~~~die~a~~~ 87 (284)
T cd07942 17 AEPMSVEQKLRFFKLLVKIGFKEIEVGF---PS-----ASQTDFDFVRELIEEDLIPDDVTIQ-VLTQAREDLIERTFEA 87 (284)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeC---CC-----CCHHHHHHHHHHHHccCCCCCCEEE-EEcCCChhhHHHHHHH
Confidence 3458999999999999999999997762 22 223334555555322 23322 2222334546666666
Q ss_pred --ccC--eeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe---eeeeEEEEe----CCCHHHHHHHHHHHhc
Q 020848 128 --GLT--AYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN---VCSGGIIGL----GEAEEDRVGLLHTLAT 193 (320)
Q Consensus 128 --Gld--~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~---v~~~~i~Gl----get~ed~~~~l~~l~~ 193 (320)
|++ .+.+.+-+++ -..+++++. ...+...+.++.+++.|++ ....+.++. --+.+.+.++++.+.+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~ 167 (284)
T cd07942 88 LRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVID 167 (284)
T ss_pred hCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHH
Confidence 665 5777776663 333444332 2455666777788888875 233444544 1245667777777766
Q ss_pred C-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc-eeecC----CcccccChhHHHHHHHcCCceEe
Q 020848 194 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA-MVRLS----AGRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 194 l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~-~i~~~----~g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
. +..++...-. -.++|- ...++.++.+++...+..+|.. .+.+. .. .++.-.....++.+||..+-
T Consensus 168 ~~~~g~~~~~~i---~laDTv----G~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd-~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 168 VWQPTPENKIIL---NLPATV----EVATPNVYADQIEWFCRNLSRRESVIISLHPHND-RGTGVAAAELALLAGADRVE 239 (284)
T ss_pred hhcCCCCcceEE---Eccccc----cccCHHHHHHHHHHHHHhcCCCCCceEEEEecCC-CchHHHHHHHHHHhCCCEEE
Confidence 5 1112211111 223432 2456777888888777766642 12221 10 11111223567899998872
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCC
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~ 293 (320)
.|-+ ..++....++++.++...|..
T Consensus 240 ~~~~g~G-eRaGN~~~E~lv~~l~~~g~~ 267 (284)
T cd07942 240 GTLFGNG-ERTGNVDLVTLALNLYSQGVD 267 (284)
T ss_pred eeCccCC-ccccchhHHHHHHHHHhcCCC
Confidence 2211 125667888999999887765
No 230
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.42 E-value=0.97 Score=38.06 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++|++...+..+..+|.+.+++..+.-. +.+.. .++++++++ .++++.+-.|..+.+.++.+.++|.|.+-
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa--~~~v~----~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGA--SYPVN----PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCC--CCCCC----HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 378999999999888899999998643211 11222 445555553 36788888899999999999999999886
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 204 VG 205 (205)
T TIGR01769 204 TG 205 (205)
T ss_pred eC
Confidence 53
No 231
>PRK14847 hypothetical protein; Provisional
Probab=93.32 E-value=6.2 Score=35.87 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC-----ceEEEeCCCCCHH----HHHHH
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG-----MEVCCTLGMLEKH----QAIEL 124 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~-----~~i~~~~g~l~~e----~l~~L 124 (320)
..++++|=++.++.+.+.|++.|-.+. +..+ +.-.+.++.+.+.+ ..++.-+ ....+ .++.+
T Consensus 49 v~fs~eeKl~IA~~L~~lGVd~IEvG~---Pa~s-----~~e~e~ir~I~~~~~~~~~~~i~~~~-r~~~~dId~a~e~~ 119 (333)
T PRK14847 49 EPMDGARKLRLFEQLVAVGLKEIEVAF---PSAS-----QTDFDFVRKLIDERRIPDDVTIEALT-QSRPDLIARTFEAL 119 (333)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeeC---CCCC-----HHHHHHHHHHHHhCCCCCCcEEEEEe-cCcHHHHHHHHHHh
Confidence 348999999999999999999997752 2222 22345555554332 3332222 22334 34444
Q ss_pred HHhccCeeccCccccHH-HHhhhCCCCCH----HHHHHHHHHHHHcCCe---eeeeEEEEe-CC---CHHHHHHHHHHHh
Q 020848 125 KKAGLTAYNHNLDTSRE-FYSKIITTRSY----DERLETLKHVREAGIN---VCSGGIIGL-GE---AEEDRVGLLHTLA 192 (320)
Q Consensus 125 ~~aGld~v~i~let~~~-~~~~i~~~~~~----~~~l~~i~~a~~~Gi~---v~~~~i~Gl-ge---t~ed~~~~l~~l~ 192 (320)
+.++.++|++.+-+++- ...+++ .+. +...++++.+++.|.. ....+-+|. .- ..+-+.+..+.+.
T Consensus 120 ~~~~~~~Vhi~~p~Sd~h~~~kl~--~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~ 197 (333)
T PRK14847 120 AGSPRAIVHLYNPIAPQWRRIVFG--MSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVS 197 (333)
T ss_pred CCCCCCEEEEEecCCHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHH
Confidence 44455669998888743 333343 344 4455677778887652 112345555 22 2344455555543
Q ss_pred cC-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC-ceeecC--C-cccccChhHHHHHHHcCCceEe
Q 020848 193 TL-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK-AMVRLS--A-GRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 193 ~l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~-~~i~~~--~-g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
+. | ++..+...+ -+++|- ...++.++...+...+.-++. ..+.++ . ...++--.....++.+||..+-
T Consensus 198 ~~~g--a~r~~a~~i-~l~DTV----G~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~ 270 (333)
T PRK14847 198 AIWG--PTPQRKMII-NLPATV----ESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIE 270 (333)
T ss_pred HHhC--CCccCCcEE-EeCCcc----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEE
Confidence 33 4 333222222 123442 335566777777666544432 112221 0 0011112234568899999873
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
.|.+ ..++....++++..+...|+..
T Consensus 271 ~tv~G~G-ERaGNa~lE~v~~~L~~~g~~~ 299 (333)
T PRK14847 271 GCLFGNG-ERTGNVDLVALALNLERQGIAS 299 (333)
T ss_pred eeCCcCC-ccccchhHHHHHHHHHhcCCCC
Confidence 2221 1356677888888888877754
No 232
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.26 E-value=4.8 Score=34.43 Aligned_cols=186 Identities=17% Similarity=0.135 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|++.+++.+-.....+.+.. .++++.++ ..++++.+..|..+.+.++++.++|+|.+.++-..
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~----~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~ 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVN----LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCC----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 44555566667899999987422211122222 44455555 34688888889999999999999999998776433
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGG----IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~----i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
. .+++...+..+...+..+-+.+++ ++-.+ .+..+..+.++.+.+.| ++.+.+..... .|
T Consensus 106 l----------~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--a~~iii~~~~~-~g 172 (234)
T cd04732 106 V----------KNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG--VKAIIYTDISR-DG 172 (234)
T ss_pred H----------hChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC--CCEEEEEeecC-CC
Confidence 2 112222222222211111122221 21111 23345667777778887 66666654322 23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
+. ..++.+. ++ ..+...+-+ +-..+|-.+ .+.-...+..|++.++.|..+.
T Consensus 173 ~~----~g~~~~~-i~---~i~~~~~ip-vi~~GGi~~--~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 173 TL----SGPNFEL-YK---ELAAATGIP-VIASGGVSS--LDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cc----CCCCHHH-HH---HHHHhcCCC-EEEecCCCC--HHHHHHHHHCCCCEEEEeHHHH
Confidence 32 2233322 22 222222211 222222211 1222445667999998886443
No 233
>PRK15452 putative protease; Provisional
Probab=93.15 E-value=5 Score=38.12 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=58.5
Q ss_pred eEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHH
Q 020848 108 EVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRV 185 (320)
Q Consensus 108 ~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~ 185 (320)
++.+..| +.+.++...++|.|.|.++.+.+ .+... ..-+.++..++++.+++.|.++.+.+-.-. .+..+.+.
T Consensus 5 eLlapag--~~e~l~aAi~~GADaVY~G~~~~~~R~~~---~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAG--TLKNMRYAFAYGADAVYAGQPRYSLRVRN---NEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECC--CHHHHHHHHHCCCCEEEECCCccchhhhc---cCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 3444444 46888888899999999999877 33321 234678899999999999988655432212 33444556
Q ss_pred HHHHHHhcCCCCCCeee
Q 020848 186 GLLHTLATLPTHPESVP 202 (320)
Q Consensus 186 ~~l~~l~~l~~~~~~v~ 202 (320)
+.++.+.+++ ++.+-
T Consensus 80 ~~l~~l~~~g--vDgvI 94 (443)
T PRK15452 80 RDLEPVIAMK--PDALI 94 (443)
T ss_pred HHHHHHHhCC--CCEEE
Confidence 6667777776 44433
No 234
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.04 E-value=1.3 Score=42.40 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.+++-.. .|.+ ..+.++++.+|+. ++++..-| ..+.+..+.|.++|+|.|.+++
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a----~g~~---~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA----HGHQ---VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC----CCCc---HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECC
Confidence 56677788888899999888432 2433 7788888888864 56665522 5899999999999999998776
Q ss_pred ccc-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 137 DTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 137 et~-~~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
-.. --..+.... .....-.++..+.+++.|+++-.+ |--.+..|+.+.+. +| .+.+-+..+
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad---Ggi~~~~di~kala----~G--A~~vm~g~~ 359 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD---GGVRHPRDVALALA----AG--ASNVMVGSW 359 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe---CCCCCHHHHHHHHH----cC--CCEEeechh
Confidence 443 111112111 124566677777777776553111 11246677766654 44 445555443
No 235
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=92.70 E-value=7.7 Score=35.31 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.++.++.++.+.+.|++.+-++... .. |.. ..-.+.+..... ... ....+.-..+.++...++|++.+.+
T Consensus 16 ~~~~~~ki~i~~~l~~~Gv~~iE~g~p~---~~-~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (344)
T TIGR02146 16 NFSTEQKIEIAKALDEFGIDYIEVTHPA---AS-KQS-RIDIEIIASLGL-KAN-IVTHIRCRLDDAKVAVELGVDGIDI 88 (344)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCC---CC-HHH-HHHHHHHHhcCC-CcE-EEEECCCCHHHHHHHHHCCcCEEEE
Confidence 3789999999999999999998776421 11 111 122333333221 111 2222334467778888889988776
Q ss_pred Ccccc-HHHHhhhCC--CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 135 NLDTS-REFYSKIIT--TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 135 ~let~-~~~~~~i~~--~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
..-.. ......... ....+.+...++.+++.|+.+...+.-......+++.++.+.+..++ ++.+.+. .
T Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g--~~~i~~~------d 160 (344)
T TIGR02146 89 FFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFG--VDRVGIA------D 160 (344)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCC--CCEEEEc------C
Confidence 54333 222333222 12345677888899999988877776655566788888888888887 5543321 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc-ccccChhHHHHHHHcCCceE
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG-RVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g-~~~~~~~~~~~~~~~Gan~~ 266 (320)
|.. ...+.++...+...+...+...+.+.+- ..++.-.....++.+|+..+
T Consensus 161 t~g----~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~ 212 (344)
T TIGR02146 161 TVG----KAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIV 212 (344)
T ss_pred CCC----cCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEE
Confidence 221 1234445555555555555432222110 01111123356778887765
No 236
>PLN02334 ribulose-phosphate 3-epimerase
Probab=92.63 E-value=6 Score=33.89 Aligned_cols=195 Identities=15% Similarity=0.151 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCC--CchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHHHHHhcc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g--e~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
++..+.+.++.+.+.|++.+.+=- -.+ .| ....=.+.++.+++. ++.+.+++ ..+.++.+.++|.
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~----~d~~f~~-~~~~g~~~~~~l~~~~~~~~~vhlmv~~---p~d~~~~~~~~ga 89 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDV----MDGHFVP-NLTIGPPVVKALRKHTDAPLDCHLMVTN---PEDYVPDFAKAGA 89 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec----ccCCcCC-ccccCHHHHHHHHhcCCCcEEEEeccCC---HHHHHHHHHHcCC
Confidence 445778888888889999988721 111 11 111001344444432 22222221 2567888899999
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.|.+.++.. .-+...+.++.+++.|+.+++.+ ...|..+..+ .+.+.+ .++.+.+.+..|
T Consensus 90 d~v~vH~~q~-----------~~d~~~~~~~~i~~~g~~iGls~---~~~t~~~~~~---~~~~~~-~~Dyi~~~~v~p- 150 (229)
T PLN02334 90 SIFTFHIEQA-----------STIHLHRLIQQIKSAGMKAGVVL---NPGTPVEAVE---PVVEKG-LVDMVLVMSVEP- 150 (229)
T ss_pred CEEEEeeccc-----------cchhHHHHHHHHHHCCCeEEEEE---CCCCCHHHHH---HHHhcc-CCCEEEEEEEec-
Confidence 9997655410 01223567788888887544332 1224333222 222221 156777777766
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
|+.-.. ..+ ..+..+..++...++..+.+.+ ++..+.-.....+|++.++.|..+.. ..++.+.++-++
T Consensus 151 -g~~~~~---~~~-~~~~~i~~~~~~~~~~~I~a~G---GI~~e~i~~l~~aGad~vvvgsai~~--~~d~~~~~~~l~ 219 (229)
T PLN02334 151 -GFGGQS---FIP-SMMDKVRALRKKYPELDIEVDG---GVGPSTIDKAAEAGANVIVAGSAVFG--APDYAEVISGLR 219 (229)
T ss_pred -CCCccc---cCH-HHHHHHHHHHHhCCCCcEEEeC---CCCHHHHHHHHHcCCCEEEEChHHhC--CCCHHHHHHHHH
Confidence 322111 112 2233344455554443333333 34444445677899999988864332 224444444443
No 237
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=92.55 E-value=3.3 Score=36.16 Aligned_cols=174 Identities=20% Similarity=0.235 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+..+.++.+.+.|+..+.+.+. +.++..=++.+..++ ..++++....-.+++-++.+-+.+|.|.|.+-...
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe-------~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~ 141 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE-------PKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI 141 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---------SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG
T ss_pred CHHHHHHHHHhcCCCEEEEECC-------CCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh
Confidence 3344555667789999877652 334444444555555 45778777777799999999999999999887655
Q ss_pred c-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCC
Q 020848 139 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQ 217 (320)
Q Consensus 139 ~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~ 217 (320)
. ++. ..+.++.++..|+.+ ++-. .+.+|+...+ +.+ .+.++++.-. +...
T Consensus 142 L~~~~------------l~~l~~~a~~lGle~----lVEV-h~~~El~~al----~~~--a~iiGINnRd------L~tf 192 (254)
T PF00218_consen 142 LSDDQ------------LEELLELAHSLGLEA----LVEV-HNEEELERAL----EAG--ADIIGINNRD------LKTF 192 (254)
T ss_dssp SGHHH------------HHHHHHHHHHTT-EE----EEEE-SSHHHHHHHH----HTT---SEEEEESBC------TTTC
T ss_pred CCHHH------------HHHHHHHHHHcCCCe----EEEE-CCHHHHHHHH----HcC--CCEEEEeCcc------ccCc
Confidence 5 333 345577888889875 3322 3667765544 555 6677777542 2211
Q ss_pred CCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCC
Q 020848 218 KPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTP 276 (320)
Q Consensus 218 ~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~ 276 (320)
..+.+. .......+|...+.++.+ ++. ++.......+|++.+.+|+.++.+.
T Consensus 193 -~vd~~~----~~~l~~~ip~~~~~iseS--GI~~~~d~~~l~~~G~davLVGe~lm~~~ 245 (254)
T PF00218_consen 193 -EVDLNR----TEELAPLIPKDVIVISES--GIKTPEDARRLARAGADAVLVGEALMRSP 245 (254)
T ss_dssp -CBHTHH----HHHHHCHSHTTSEEEEES--S-SSHHHHHHHCTTT-SEEEESHHHHTSS
T ss_pred -ccChHH----HHHHHhhCccceeEEeec--CCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 122222 222334455555555421 222 2333445568999999998666543
No 238
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=92.37 E-value=12 Score=36.60 Aligned_cols=223 Identities=10% Similarity=0.030 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCH-----------HHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEK-----------HQAIE 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~-----------e~l~~ 123 (320)
....+-++.++...+.|+++++|..-+-...+ +...+..+++++++. +..+++.+-.|..+. +.+++
T Consensus 264 ~~~gdPve~a~~y~~~Gadel~~~Di~~~~~~-~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~ 342 (538)
T PLN02617 264 RNLGKPVELAGQYYKDGADEVAFLNITGFRDF-PLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASE 342 (538)
T ss_pred CcCCCHHHHHHHHHHcCCCEEEEEECCCCcCC-cccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHH
Confidence 34455677788888899999998642211011 224455778888876 457888888787664 78999
Q ss_pred HHHhccCeeccCcccc--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE----------------------------
Q 020848 124 LKKAGLTAYNHNLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGG---------------------------- 173 (320)
Q Consensus 124 L~~aGld~v~i~let~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~---------------------------- 173 (320)
|.++|+|.|.++-... ++.|=.-....+++-+-+..+..-+.-+-+.++.
T Consensus 343 ~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (538)
T PLN02617 343 YFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEY 422 (538)
T ss_pred HHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccc
Confidence 9999999999986554 2222222233455444444433321111122221
Q ss_pred ----EEEeC---CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCc
Q 020848 174 ----IIGLG---EAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAG 246 (320)
Q Consensus 174 ----i~Glg---et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g 246 (320)
++-.| .+.-+..+.++.+.++| ...+-+ .-+-..||.- .++.+ +++.++. .. +..+-.++|
T Consensus 423 ~~~~v~~~gg~~~~~~~~~~~~~~~~~~G--ageil~-t~id~DGt~~----G~d~~-l~~~v~~---~~-~ipviasGG 490 (538)
T PLN02617 423 AWYQCTVKGGREGRPIGAYELAKAVEELG--AGEILL-NCIDCDGQGK----GFDIE-LVKLVSD---AV-TIPVIASSG 490 (538)
T ss_pred eEEEEEEecCcccCCCCHHHHHHHHHhcC--CCEEEE-eecccccccc----CcCHH-HHHHHHh---hC-CCCEEEECC
Confidence 11122 23446677788888887 434333 2233446542 23333 2332221 11 222223443
Q ss_pred ccccChhHHHHHHH-cCCceEeeCCccccCCCCChhHHHHHHHHcCCCc
Q 020848 247 RVRFSMPEQALCFL-AGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTP 294 (320)
Q Consensus 247 ~~~~~~~~~~~~~~-~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p 294 (320)
-.+. .+. ...|. .|++....+. +..-..-+..++.+.+++.|+.+
T Consensus 491 ~g~~-~d~-~~~~~~~~~~a~~aa~-~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 491 AGTP-EHF-SDVFSKTNASAALAAG-IFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred CCCH-HHH-HHHHhcCCccEEEEEe-eeccCCCCHHHHHHHHHHCCCcc
Confidence 3222 222 33444 5667665554 44445678899999999999765
No 239
>PRK03739 2-isopropylmalate synthase; Validated
Probab=92.30 E-value=12 Score=36.65 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-----CceEEEeCCCCCHHHHHH----
Q 020848 53 QKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-----GMEVCCTLGMLEKHQAIE---- 123 (320)
Q Consensus 53 ~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-----~~~i~~~~g~l~~e~l~~---- 123 (320)
...++.++=++.++.+.+.|++.|-++. +..+ +.=.+.++.+.+. +..++.- ....+..+++
T Consensus 46 gv~~s~~~Ki~ia~~L~~~GV~~IE~Gf---P~~s-----~~e~e~v~~i~~~~~~~~~~~i~~l-~r~~~~di~~a~~a 116 (552)
T PRK03739 46 IEPMSPERKLRMFDLLVKIGFKEIEVGF---PSAS-----QTDFDFVRELIEEGLIPDDVTIQVL-TQAREHLIERTFEA 116 (552)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC---CCcC-----hHHHHHHHHHHHhcCCCCCCEEEEE-eccchhHHHHHHHH
Confidence 3448999999999999999999997752 2222 2234455555322 3333211 1122333443
Q ss_pred HHHhccCeeccCccccH-HHHhhhCCC--CCHHHHHHHHHHHHHcCCe---eeeeEEEEeC----CCHHHHHHHHHHHhc
Q 020848 124 LKKAGLTAYNHNLDTSR-EFYSKIITT--RSYDERLETLKHVREAGIN---VCSGGIIGLG----EAEEDRVGLLHTLAT 193 (320)
Q Consensus 124 L~~aGld~v~i~let~~-~~~~~i~~~--~~~~~~l~~i~~a~~~Gi~---v~~~~i~Glg----et~ed~~~~l~~l~~ 193 (320)
++.++...|.+.+-+++ -...+++.. ...+...+.++.+++.|.. ....+.++.. -+.+-+.++++.+.+
T Consensus 117 ~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~ 196 (552)
T PRK03739 117 LEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVID 196 (552)
T ss_pred hcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHH
Confidence 33444456777777773 333344322 2345566677777777743 2244555442 245556777777665
Q ss_pred C-CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ceeecC--CcccccChhHHHHHHHcCCceEe
Q 020848 194 L-PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPK---AMVRLS--AGRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 194 l-~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~---~~i~~~--~g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
. +.+.+...... +++|- ....+.++.+++...+..+|+ ..+.+- .. .++--.....++.+||..+-
T Consensus 197 ~~~ag~~~~~~i~---l~DTv----G~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND-~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 197 VWQPTPERKVILN---LPATV----EMSTPNVYADQIEWMCRNLARRDSVILSLHPHND-RGTGVAAAELALMAGADRVE 268 (552)
T ss_pred hhcCCCCceeEEE---eccCC----cCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCC-CChHHHHHHHHHHhCCCEEE
Confidence 3 21233222111 44553 345677777888777766663 222211 11 11111234568899998872
Q ss_pred ---eCCccccCCCCChhHHHHHHHHcCCC
Q 020848 268 ---TGEKLLTTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~i~~~G~~ 293 (320)
.|-+ ..++..+.++++-++...|+.
T Consensus 269 gtvnG~G-ERaGNa~le~vv~~L~~~g~~ 296 (552)
T PRK03739 269 GCLFGNG-ERTGNVDLVTLALNLYTQGVD 296 (552)
T ss_pred eeCCcCc-ccccChhHHHHHHHHHhcCCC
Confidence 2221 135566778888878777764
No 240
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=92.19 E-value=0.32 Score=45.48 Aligned_cols=93 Identities=12% Similarity=0.165 Sum_probs=52.5
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCC--------Cc------------CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCC--
Q 020848 29 KTGGCSEDCSYCPQSSRYDTGVK--------GQ------------KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-- 86 (320)
Q Consensus 29 ~t~~C~~~C~fC~~~~~~~~~~~--------~~------------~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-- 86 (320)
--..|+++|.||-....+. +++ .| ..|+.+++.+.++ ++...+.++=....+.
T Consensus 80 ~~~~C~N~C~FCFidQlP~-gmR~sLY~KDDDyRLSFL~GnyiTLTNl~~~d~~RI~~----~~lspl~iSVhat~p~lR 154 (433)
T TIGR03279 80 GLIQCNNRCPFCFIDQQPP-GKRESLYLKDDDYRLSFLYGSYLTLTNLPPAEWQRIEQ----LRLSPLYVSVHATEPSLR 154 (433)
T ss_pred cccccCCcCceEeccCCCC-CCcCcceeccCcchhhhhccceeeecCCCHHHHHHHHH----cCCCCEEEEEecCCHHHH
Confidence 4678999999995543221 211 11 1256777766654 6777777643211111
Q ss_pred ----CCchhHHHHHHHHHHhhhcCceE----EEeCCCC----CHHHHHHHHHh
Q 020848 87 ----GRKTNFNQILEYVKDIRDMGMEV----CCTLGML----EKHQAIELKKA 127 (320)
Q Consensus 87 ----ge~~~~~~l~~~i~~~k~~~~~i----~~~~g~l----~~e~l~~L~~a 127 (320)
+.| ....+++.++++.+.++++ ...+|.- .++.++.|.+.
T Consensus 155 ~~ll~n~-~a~~il~~l~~l~~~~I~~h~qiVlcPGiNDg~~L~~Ti~dL~~~ 206 (433)
T TIGR03279 155 ARLLKNP-RAGLILEQLKWFQERRLQLHAQVVVCPGINDGKHLERTLRDLAQF 206 (433)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCeEEEEEEEcCCcCCHHHHHHHHHHHHhh
Confidence 111 3466778888887667663 3345543 45566667665
No 241
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.16 E-value=7.2 Score=33.76 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC-ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN-LDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~-let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
.+++.++.+..++.|+....|+ .+.+.++.|.+.|++.+-|. -|. +. +..++.+.+.|.++
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stp--fd~~s~d~l~~~~~~~~KIaS~dl------------~n---~~lL~~~A~tgkPv- 116 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTP--FDEESVDFLEELGVPAYKIASGDL------------TN---LPLLEYIAKTGKPV- 116 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE---SHHHHHHHHHHT-SEEEE-GGGT------------T----HHHHHHHHTT-S-E-
T ss_pred HHHHHHHHHHHHHcCCEEEECC--CCHHHHHHHHHcCCCEEEeccccc------------cC---HHHHHHHHHhCCcE-
Confidence 3556667777777888876664 67899999999888887763 111 11 45566767777764
Q ss_pred eeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccc
Q 020848 171 SGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVR 249 (320)
Q Consensus 171 ~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~ 249 (320)
|+.. .-+.+|+.+.++.+++-+ ...+.+..-+ .+ .|.+..+--++.+...+..++ ..+-++.-..+
T Consensus 117 ---IlSTG~stl~EI~~Av~~~~~~~--~~~l~llHC~--s~-----YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 117 ---ILSTGMSTLEEIERAVEVLREAG--NEDLVLLHCV--SS-----YPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp ---EEE-TT--HHHHHHHHHHHHHHC--T--EEEEEE---SS-----SS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred ---EEECCCCCHHHHHHHHHHHHhcC--CCCEEEEecC--CC-----CCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 5556 468899999999996554 2334443221 11 122223334566777777777 33333311112
Q ss_pred cChhHHHHHHHcCCceE---eeCCccc----cCCCCChhHHHHHHHH
Q 020848 250 FSMPEQALCFLAGANSI---FTGEKLL----TTPNNDFDADQLMFKV 289 (320)
Q Consensus 250 ~~~~~~~~~~~~Gan~~---~~~~~~~----~~~~~~~~~~~~~i~~ 289 (320)
-.....++..||..+ ++-++-. .....++++..+|+++
T Consensus 184 --~~~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ 228 (241)
T PF03102_consen 184 --IEAPIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRD 228 (241)
T ss_dssp --SHHHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHH
T ss_pred --cHHHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHH
Confidence 223456777899887 3322211 1112457777777654
No 242
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=92.15 E-value=7.1 Score=33.62 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
.++.++.+.+.|++.+.+..-.... .......+.++.+. ..++++.+..|..+.+.++.+.++|++.+.++-..
T Consensus 34 ~~e~a~~~~~~G~~~l~i~dl~~~~----~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~ 108 (241)
T PRK13585 34 PVEVAKRWVDAGAETLHLVDLDGAF----EGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA 108 (241)
T ss_pred HHHHHHHHHHcCCCEEEEEechhhh----cCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence 4445555667899998885421111 12223344555544 45788888889999999999999999999886533
No 243
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=92.07 E-value=3.4 Score=38.54 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=75.8
Q ss_pred CCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCC--C-HHHHHHHHHH
Q 020848 87 GRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTR--S-YDERLETLKH 161 (320)
Q Consensus 87 ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~--~-~~~~l~~i~~ 161 (320)
|+|..++.+-.+++.+++..+. ..++|.. -.+.+..++. +..+.++++.. ...++.+.++- + |+..++.++.
T Consensus 363 gepi~yp~in~f~k~lH~k~issflvtnaq-~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~ 439 (601)
T KOG1160|consen 363 GEPIMYPEINPFAKLLHQKLISSFLVTNAQ-FPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKA 439 (601)
T ss_pred cccccchhhhHHHHHHHhccchHHhccccc-ChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHH
Confidence 5678888999999998866555 3455543 3555555555 55677788887 67777765542 2 4555566666
Q ss_pred HHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC---CCCCCCCCCCHHHHHHHHH
Q 020848 162 VREAGIN--VCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG---TPLQDQKPVEIWEMIRMIA 230 (320)
Q Consensus 162 a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g---t~~~~~~~~~~~e~~~~~a 230 (320)
+++.--+ +..+++- +-|.+|+.+-...+..-- ++.+.+-.-.-... .++-....+..++..+...
T Consensus 440 lk~K~qrtvyRlTlVk--g~n~dd~~Ayfnlv~rgl--p~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~ 509 (601)
T KOG1160|consen 440 LKKKQQRTVYRLTLVK--GWNSDDLPAYFNLVSRGL--PDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVF 509 (601)
T ss_pred HHHhhcceEEEEEEec--cccccccHHHHHHHhccC--CceEEEeceeEecccccCcccccCccHHHHHHHHHH
Confidence 6543222 3344333 446667766666554322 44454433332222 2222223344555555543
No 244
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=91.98 E-value=7.4 Score=33.46 Aligned_cols=188 Identities=12% Similarity=0.096 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHH---hccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKK---AGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~---aGld~v 132 (320)
++.+. .+..+.+.+.|-++|.+- . ......+.+-+.++++ +.++.++.+..+.+.+.++.+ .+.+.|
T Consensus 27 ~d~~t-~~a~~~~~~rgr~ef~~~-------~-e~~~~~i~~e~~~~~~-~~~vivnv~~~~~ee~~~~a~~v~~~~d~I 96 (231)
T TIGR00736 27 ADRAT-YKASRDIEKRGRKEFSFN-------L-EEFNSYIIEQIKKAES-RALVSVNVRFVDLEEAYDVLLTIAEHADII 96 (231)
T ss_pred CCHHH-HHHHHHHHHcCCcccCcC-------c-ccHHHHHHHHHHHHhh-cCCEEEEEecCCHHHHHHHHHHHhcCCCEE
Confidence 44333 444567777888777431 1 1244566666777763 446777777777666555533 367777
Q ss_pred ccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 133 NHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 133 ~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
.++.--. +++.+.-.+ .++++...+.++.+++.++++.+-+=.|. +..+..++.+.+.+.| .+.+.+....|
T Consensus 97 diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--~~~~~~~~a~~l~~aG--ad~i~Vd~~~~ 172 (231)
T TIGR00736 97 EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--IPLDELIDALNLVDDG--FDGIHVDAMYP 172 (231)
T ss_pred EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--CcchHHHHHHHHHHcC--CCEEEEeeCCC
Confidence 6665444 344332111 24778888888888877777666655433 4456778888888888 67777754332
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 209 VKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 209 ~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
|.+ . -.++.+...+..++... -+..|-+ ...+.....+.+||+.++.+.
T Consensus 173 --g~~-----~----a~~~~I~~i~~~~~~ip-IIgNGgI-~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 173 --GKP-----Y----ADMDLLKILSEEFNDKI-IIGNNSI-DDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred --CCc-----h----hhHHHHHHHHHhcCCCc-EEEECCc-CCHHHHHHHHHhCCCeEEEcH
Confidence 221 1 12344444444443211 1222212 122334566778999998874
No 245
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.97 E-value=4.9 Score=36.46 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-ccC-CCCCC----chhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGA-AWR-DTIGR----KTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~-g~~-~~~ge----~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
-+++++.+.++...+.|+..|.+.. |.. ..... ....+.+.++++.+++.|+.+.++.. ....++.+.++|+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 4689999999999999998876632 111 11010 13456777888888887877665543 2455666667777
Q ss_pred CeeccC
Q 020848 130 TAYNHN 135 (320)
Q Consensus 130 d~v~i~ 135 (320)
+.+.+.
T Consensus 195 ~~i~H~ 200 (342)
T cd01299 195 DTIEHG 200 (342)
T ss_pred CEEeec
Confidence 766554
No 246
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.93 E-value=6.8 Score=32.97 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.|+.++.++.+.+.|++-+-++-- -+.-.+.++.+++..-++.+-.|. ++.++++...++|.+.+ +
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~----------t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-v 85 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLR----------TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-V 85 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCC----------CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-E
Confidence 58899999999999999998877531 133445555555322244455554 89999999999999876 2
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
+ +.-+ -+.++.+++.|+.+-.+++ |+.|+... .+.| .+.+.+++ ...+
T Consensus 86 s------------P~~~----~~v~~~~~~~~i~~iPG~~-----TptEi~~A----~~~G--a~~vKlFP-----A~~~ 133 (204)
T TIGR01182 86 S------------PGLT----PELAKHAQDHGIPIIPGVA-----TPSEIMLA----LELG--ITALKLFP-----AEVS 133 (204)
T ss_pred C------------CCCC----HHHHHHHHHcCCcEECCCC-----CHHHHHHH----HHCC--CCEEEECC-----chhc
Confidence 2 1111 2667788888887644332 56666554 3455 56666644 2111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. .+ ..+...+.-+|+..+-.++ ++..+.-...+.+|+..+..|..+
T Consensus 134 G---G~------~yikal~~plp~i~~~ptG---GV~~~N~~~~l~aGa~~vg~Gs~L 179 (204)
T TIGR01182 134 G---GV------KMLKALAGPFPQVRFCPTG---GINLANVRDYLAAPNVACGGGSWL 179 (204)
T ss_pred C---CH------HHHHHHhccCCCCcEEecC---CCCHHHHHHHHhCCCEEEEEChhh
Confidence 1 01 2334445566664333232 233344456778999888777633
No 247
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=91.90 E-value=9.7 Score=34.66 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=89.0
Q ss_pred HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe---------CCC---------C------------CH
Q 020848 69 KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGM---------L------------EK 118 (320)
Q Consensus 69 ~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~---------~g~---------l------------~~ 118 (320)
++.|+..|-+=--..+..+.-..+++.+++.+++|+.|+.+++. +|. + +.
T Consensus 34 k~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~ 113 (332)
T PF07745_consen 34 KDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTK 113 (332)
T ss_dssp HHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHH
T ss_pred HhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHH
Confidence 44788776651111232212356789999999999888875432 221 1 46
Q ss_pred HHHHHHHHhcc--CeeccCccccHHHHhhhCCCCCHHHHHHHHH----HHHHcCCeeeeeEEEEe--CCCHHHHHHHHHH
Q 020848 119 HQAIELKKAGL--TAYNHNLDTSREFYSKIITTRSYDERLETLK----HVREAGINVCSGGIIGL--GEAEEDRVGLLHT 190 (320)
Q Consensus 119 e~l~~L~~aGl--d~v~i~let~~~~~~~i~~~~~~~~~l~~i~----~a~~~Gi~v~~~~i~Gl--get~ed~~~~l~~ 190 (320)
+.++.|+++|+ +.|.++=|+....+--..+..+++...+.++ ..++.+ ..+-+++-+ +.+.+.....+..
T Consensus 114 ~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~--p~~kV~lH~~~~~~~~~~~~~f~~ 191 (332)
T PF07745_consen 114 DVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD--PNIKVMLHLANGGDNDLYRWFFDN 191 (332)
T ss_dssp HHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS--STSEEEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC--CCCcEEEEECCCCchHHHHHHHHH
Confidence 67789999996 6788876654222222223456665554443 333322 223345544 5666777888888
Q ss_pred HhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcc
Q 020848 191 LATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGR 247 (320)
Q Consensus 191 l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~ 247 (320)
++..+.+.+.++++.| |. -.. +.+.+...+..++.-+....+...+++
T Consensus 192 l~~~g~d~DviGlSyY-P~-----w~~---~l~~l~~~l~~l~~ry~K~V~V~Et~y 239 (332)
T PF07745_consen 192 LKAAGVDFDVIGLSYY-PF-----WHG---TLEDLKNNLNDLASRYGKPVMVVETGY 239 (332)
T ss_dssp HHHTTGG-SEEEEEE--ST-----TST----HHHHHHHHHHHHHHHT-EEEEEEE--
T ss_pred HHhcCCCcceEEEecC-CC-----Ccc---hHHHHHHHHHHHHHHhCCeeEEEeccc
Confidence 8888766777777554 42 111 456666666554433344444433333
No 248
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=91.83 E-value=1.5 Score=37.56 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+...+ -..++|+--. +..+| -....+.+.+.++.+|+.|++++.-.. -+.++++.-++.|.|+
T Consensus 73 t~e~~~ia~~~k---P~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiD-P~~~qi~~A~~~Gad~ 148 (239)
T PF03740_consen 73 TEEMVDIALKVK---PDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFID-PDPEQIEAAKELGADR 148 (239)
T ss_dssp SHHHHHHHHHH-----SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE--S-HHHHHHHHHTT-SE
T ss_pred CHHHHHHHHhCC---cCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeC-CCHHHHHHHHHcCCCE
Confidence 366777665544 3477775100 00011 123578899999999999998654322 3488999999999999
Q ss_pred eccCccccHHHHhhhCCCC-C-HHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTR-S-YDERLETLKHVREAGINVCSGGIIGLGEAEEDRV 185 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~-~-~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~ 185 (320)
|-+.-..+.+.+..-.... . ++++.++.+.+++.|+.+. .|+|-+.+.+.
T Consensus 149 VELhTG~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~Vn----AGHgL~y~N~~ 200 (239)
T PF03740_consen 149 VELHTGPYANAFDDAEEAEEELLERLRDAARYAHELGLGVN----AGHGLNYDNVR 200 (239)
T ss_dssp EEEETHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-EEE----EETT--TTTHH
T ss_pred EEEehhHhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHHHH
Confidence 8876544322221110011 1 4667777788888887664 45665544433
No 249
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.82 E-value=7.5 Score=33.20 Aligned_cols=185 Identities=20% Similarity=0.112 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.++.+.+.|++.+++..-.....+.+.. .++++.+. ..++++....|..+.+.++.+.++|++.+.++-...
T Consensus 30 p~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~----~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l 105 (230)
T TIGR00007 30 PVEAAKKWEEEGAERIHVVDLDGAKEGGPVN----LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAV 105 (230)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccCCCCc----HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 3444555677899999886432221122223 33444443 346778888899999999999999999987664322
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE----eCC---CHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCC
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG----LGE---AEEDRVGLLHTLATLPTHPESVPINALLAVKGT 212 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G----lge---t~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt 212 (320)
.+.+...+..+.+....+-+.+++--| .|. +..+..++++.+.+.| ++.+-+..... .|+
T Consensus 106 ----------~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g--~~~ii~~~~~~-~g~ 172 (230)
T TIGR00007 106 ----------ENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG--LEGIIYTDISR-DGT 172 (230)
T ss_pred ----------hCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC--CCEEEEEeecC-CCC
Confidence 122333333333321112222332211 221 1234567777778887 56555544432 233
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 213 PLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 213 ~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.. .++.+. +...+... +..+-+++|-.+. .+. ...+..||+.++.|..++
T Consensus 173 ~~----g~~~~~----i~~i~~~~-~ipvia~GGi~~~-~di-~~~~~~Gadgv~ig~a~~ 222 (230)
T TIGR00007 173 LS----GPNFEL----TKELVKAV-NVPVIASGGVSSI-DDL-IALKKLGVYGVIVGKALY 222 (230)
T ss_pred cC----CCCHHH----HHHHHHhC-CCCEEEeCCCCCH-HHH-HHHHHCCCCEEEEeHHHH
Confidence 21 233322 22222222 2222333332221 222 345678999998886443
No 250
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=91.81 E-value=8.5 Score=33.83 Aligned_cols=135 Identities=24% Similarity=0.350 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC--CC---------------
Q 020848 56 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--LE--------------- 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~--l~--------------- 117 (320)
-+.|.+.+.-+.+.+ .|+-.+.+++ +|. ..-+++++++....+. +++.+..|+ ..
T Consensus 97 ApvevLre~ye~aL~~~~VVGLsIgT--RPD----Clpd~VldlL~e~~~r-~~vWvELGLQT~h~~Tlk~iNRgHd~~~ 169 (312)
T COG1242 97 APVEVLREMYEQALSEAGVVGLSIGT--RPD----CLPDDVLDLLAEYNKR-YEVWVELGLQTAHDKTLKRINRGHDFAC 169 (312)
T ss_pred CcHHHHHHHHHHHhCcCCeeEEeecC--CCC----CCcHHHHHHHHHHhhh-eEEEEEeccchhhHHHHHHHhcccchHH
Confidence 356666666665554 4666666654 443 4557888888888754 555555554 22
Q ss_pred -HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe-eeeeEEEEe-CC--------------C
Q 020848 118 -KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN-VCSGGIIGL-GE--------------A 180 (320)
Q Consensus 118 -~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~-v~~~~i~Gl-ge--------------t 180 (320)
.+.++++++.|+..+.+-+-++ ++.+.++.+++++.+...|+. +.++.+.-+ |- +
T Consensus 170 y~dav~r~rkrgIkvc~HiI~GL--------PgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls 241 (312)
T COG1242 170 YVDAVKRLRKRGIKVCTHLINGL--------PGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLS 241 (312)
T ss_pred HHHHHHHHHHcCCeEEEEEeeCC--------CCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCChHHHHHHcCCceecc
Confidence 3444455555554444333221 466899999999999999987 888877755 42 4
Q ss_pred HHHHHHHH-HHHhcCCCCCCeeeeeeeee
Q 020848 181 EEDRVGLL-HTLATLPTHPESVPINALLA 208 (320)
Q Consensus 181 ~ed~~~~l-~~l~~l~~~~~~v~~~~~~p 208 (320)
.+|..+++ +++..+ +..+.++.+.-
T Consensus 242 ~eeYv~~~~d~le~l---pp~vviHRitg 267 (312)
T COG1242 242 LEEYVELVCDQLEHL---PPEVVIHRITG 267 (312)
T ss_pred HHHHHHHHHHHHHhC---CcceEEEEecC
Confidence 45655544 555666 45677777653
No 251
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=91.70 E-value=7 Score=32.67 Aligned_cols=192 Identities=10% Similarity=0.097 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cce--E-EEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME--V-CCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~--i-~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+++.+.+.++.+.+.|++.+.+.-.+.+... ....-.+.++.+++. ..+ + ....+ ..+.++.++++|.|.
T Consensus 8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~---~~~~~~~~v~~i~~~~~~~v~v~lm~~~--~~~~~~~~~~~gadg 82 (210)
T TIGR01163 8 ADFARLGEEVKAVEEAGADWIHVDVMDGHFVP---NLTFGPPVLEALRKYTDLPIDVHLMVEN--PDRYIEDFAEAGADI 82 (210)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC---CcccCHHHHHHHHhcCCCcEEEEeeeCC--HHHHHHHHHHcCCCE
Confidence 56678888999999999999988411111111 112344555555532 233 2 12222 356788899999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..+. .+...+.++.+++.|+.+.+ .+.. .+..+..+.+ ... ++.+.+.++.| |
T Consensus 83 v~vh~~~-------------~~~~~~~~~~~~~~g~~~~~--~~~~-~t~~e~~~~~---~~~---~d~i~~~~~~~--g 138 (210)
T TIGR01163 83 ITVHPEA-------------SEHIHRLLQLIKDLGAKAGI--VLNP-ATPLEFLEYV---LPD---VDLVLLMSVNP--G 138 (210)
T ss_pred EEEccCC-------------chhHHHHHHHHHHcCCcEEE--EECC-CCCHHHHHHH---Hhh---CCEEEEEEEcC--C
Confidence 8774322 12334556777888876532 2222 2333322222 111 44555554433 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC----ceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHH
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPK----AMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQL 285 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~----~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~ 285 (320)
+.-... .+. .++.+...+.+.++ ..+-+.+ ++.++.-...+..|++.++.|..+... .++.+.++
T Consensus 139 ~tg~~~---~~~-~~~~i~~i~~~~~~~~~~~~i~v~G---GI~~env~~l~~~gad~iivgsai~~~--~d~~~~~~ 207 (210)
T TIGR01163 139 FGGQKF---IPD-TLEKIREVRKMIDENGLSILIEVDG---GVNDDNARELAEAGADILVAGSAIFGA--DDYKEVIR 207 (210)
T ss_pred CCcccc---cHH-HHHHHHHHHHHHHhcCCCceEEEEC---CcCHHHHHHHHHcCCCEEEEChHHhCC--CCHHHHHH
Confidence 221111 111 12233333333221 1222222 344444445678899999888644322 24544443
No 252
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.59 E-value=4.4 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc---eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~---~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.|+|++.+.+. +.+.+-+.+.+-. ....+.+.++++.+++.+. .+. -.|....+..+.|+++|+|.+
T Consensus 40 ~s~e~~v~aa~---e~~adii~iSsl~------~~~~~~~~~~~~~L~~~g~~~i~vi-vGG~~~~~~~~~l~~~Gvd~~ 109 (132)
T TIGR00640 40 QTPEEIARQAV---EADVHVVGVSSLA------GGHLTLVPALRKELDKLGRPDILVV-VGGVIPPQDFDELKEMGVAEI 109 (132)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcCch------hhhHHHHHHHHHHHHhcCCCCCEEE-EeCCCChHhHHHHHHCCCCEE
Confidence 57888877664 5678888876521 1245566666667775543 333 355667788899999999986
Q ss_pred cc
Q 020848 133 NH 134 (320)
Q Consensus 133 ~i 134 (320)
..
T Consensus 110 ~~ 111 (132)
T TIGR00640 110 FG 111 (132)
T ss_pred EC
Confidence 54
No 253
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.53 E-value=8.3 Score=33.18 Aligned_cols=129 Identities=19% Similarity=0.187 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCC---------CHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGML---------EKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l---------~~e~l~~L~~ 126 (320)
+++..+...++.+- .-++-+.|++|+.... .-+.+-+.++.+++.++.+++- |.+ -++.++..++
T Consensus 9 l~~~~~~d~Le~~g-~yID~lKfg~Gt~~l~----~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~ 82 (237)
T TIGR03849 9 LPPKFVEDYLKVCG-DYITFVKFGWGTSALI----DRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDE 82 (237)
T ss_pred CCHHHHHHHHHHhh-hheeeEEecCceEeec----cHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHH
Confidence 45555555444322 2256677766543221 1234777777778778776543 422 3566678999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe--C-----CCHHHHHHHHHHHhcCCCCCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL--G-----EAEEDRVGLLHTLATLPTHPE 199 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl--g-----et~ed~~~~l~~l~~l~~~~~ 199 (320)
.|++.|-+|--+. .-+.+++++.|+.+++.|+++.+- +|. . .+.+++.+.++...+-| .+
T Consensus 83 lGf~~IEiS~G~~---------~i~~~~~~rlI~~~~~~g~~v~~E--vG~K~~~~~~~~~~~~~i~~~~~~LeAG--A~ 149 (237)
T TIGR03849 83 LGFEAVEISDGSM---------EISLEERCNLIERAKDNGFMVLSE--VGKKSPEKDSELTPDDRIKLINKDLEAG--AD 149 (237)
T ss_pred cCCCEEEEcCCcc---------CCCHHHHHHHHHHHHhCCCeEecc--ccccCCcccccCCHHHHHHHHHHHHHCC--Cc
Confidence 9999998875332 346788889999999999876443 233 1 34456666666656676 55
Q ss_pred eeee
Q 020848 200 SVPI 203 (320)
Q Consensus 200 ~v~~ 203 (320)
.|-+
T Consensus 150 ~Vii 153 (237)
T TIGR03849 150 YVII 153 (237)
T ss_pred EEEE
Confidence 5544
No 254
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.50 E-value=1.7 Score=34.16 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EE-EeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VC-CTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~-~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
-+++|+.+.+ .+..+.-|.+++- . + .....+.++++.+++.|.. +. .-.|.+..+.++.|++.|++++.
T Consensus 50 ~tp~e~v~aA---~~~dv~vIgvSsl---~-g--~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 50 QTPEEAVRAA---VEEDVDVIGVSSL---D-G--GHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred CCHHHHHHHH---HhcCCCEEEEEec---c-c--hHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 5788888776 4455656655431 1 2 2445666677777777766 44 55677899999999999999876
Q ss_pred c
Q 020848 134 H 134 (320)
Q Consensus 134 i 134 (320)
.
T Consensus 121 ~ 121 (143)
T COG2185 121 G 121 (143)
T ss_pred C
Confidence 5
No 255
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.36 E-value=3.3 Score=35.43 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+.+..-+....|.+.. .+.++.+. ..++++.+..|..+.+.++++.++|++.+.++-..
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~----~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~ 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVN----LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCccc----HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH
Confidence 33444555666899999887632111122223 44444444 34688888999999999999999999998776533
No 256
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=91.32 E-value=4.8 Score=34.52 Aligned_cols=126 Identities=11% Similarity=0.124 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC--------CCHHHHHH----
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM--------LEKHQAIE---- 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~--------l~~e~l~~---- 123 (320)
.+.+.....++.+.+.|++.+.++--... ..+...++.+.++.+..++.++++.++... ++.+.+.+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 44566666777888899998866431110 011123334444444445567775544322 34555555
Q ss_pred HHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeeeEEEE-eC-CCHHHHHHHHHHHhcCCCCCCe
Q 020848 124 LKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIG-LG-EAEEDRVGLLHTLATLPTHPES 200 (320)
Q Consensus 124 L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~-Gi~v~~~~i~G-lg-et~ed~~~~l~~l~~l~~~~~~ 200 (320)
..++|.|.|.++..+ + ++.++.+.+. ++++ ++.| .+ .+.++..+.+..+.+.| ...
T Consensus 152 a~~~GaD~Ik~~~~~------------~----~~~~~~i~~~~~~pv---v~~GG~~~~~~~~~l~~~~~~~~~G--a~g 210 (235)
T cd00958 152 GAELGADIVKTKYTG------------D----AESFKEVVEGCPVPV---VIAGGPKKDSEEEFLKMVYDAMEAG--AAG 210 (235)
T ss_pred HHHHCCCEEEecCCC------------C----HHHHHHHHhcCCCCE---EEeCCCCCCCHHHHHHHHHHHHHcC--CcE
Confidence 667799988885311 2 2334444432 2332 3333 22 57788888888888887 554
Q ss_pred eee
Q 020848 201 VPI 203 (320)
Q Consensus 201 v~~ 203 (320)
+.+
T Consensus 211 v~v 213 (235)
T cd00958 211 VAV 213 (235)
T ss_pred EEe
Confidence 444
No 257
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=91.26 E-value=6.5 Score=34.09 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-=. ..| ....+.+.++++..+ ++++..+-. .-..+.++.|.+.|+++|.
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L~--~dg-~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rIL 146 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVLD--VDG-HVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARIL 146 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeEC--CCC-CcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEE
Confidence 4555666677788999999886421 112 245566777777665 344332211 1235678999999999987
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHH
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGL 187 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~ 187 (320)
-+= ...+..+-++.++.+.+..-.. . +|.|-|-+.+.+.++
T Consensus 147 TSG-----------g~~~a~~g~~~L~~lv~~a~~~-~-Im~GgGV~~~Nv~~l 187 (248)
T PRK11572 147 TSG-----------QQQDAEQGLSLIMELIAASDGP-I-IMAGAGVRLSNLHKF 187 (248)
T ss_pred CCC-----------CCCCHHHHHHHHHHHHHhcCCC-E-EEeCCCCCHHHHHHH
Confidence 641 1223444455555555421121 2 888889898887776
No 258
>PLN02591 tryptophan synthase
Probab=91.21 E-value=5.9 Score=34.50 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC----------------------CCCCc-hhHHHHHHHHHHhhh-cCceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD----------------------TIGRK-TNFNQILEYVKDIRD-MGMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~----------------------~~ge~-~~~~~l~~~i~~~k~-~~~~i~~ 111 (320)
+++||..+....+.+.|+..|.+.+.+.+ ..|.. ..-+.+.+.++.+|+ .+.++.+
T Consensus 115 LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v 194 (250)
T PLN02591 115 LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV 194 (250)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE
Confidence 78899988888888888888777632111 11211 123556667777775 3677777
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+.+.++.+.+.|.|.+-++
T Consensus 195 GFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 195 GFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eCCCCCHHHHHHHHhcCCCEEEEC
Confidence 778888999999999999988776
No 259
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=91.13 E-value=7.4 Score=37.50 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccCcc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~le 137 (320)
+++++.++.+.+.|++-|-++++... | ..+.+...++.+++. +++++ ....+.+.+++-.++|.+.|+ ++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~----p-~~~~v~~~V~~l~~~~~~pIS--IDT~~~~v~eaAL~aGAdiIN-sVs 236 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFD----D-DPDVVKEKVKTALDALDSPVI--ADTPTLDELYEALKAGASGVI-MPD 236 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCC----C-cHHHHHHHHHHHHhhCCCcEE--EeCCCHHHHHHHHHcCCCEEE-ECC
Confidence 88999999999999999988765321 2 234678888888754 55543 355778888888888988776 443
Q ss_pred cc--HHHHhhhCC------------CCCHHHHHHHHHHHHHcCC-eeeeeEEEEeCCCHHHHHHHHHHHh
Q 020848 138 TS--REFYSKIIT------------TRSYDERLETLKHVREAGI-NVCSGGIIGLGEAEEDRVGLLHTLA 192 (320)
Q Consensus 138 t~--~~~~~~i~~------------~~~~~~~l~~i~~a~~~Gi-~v~~~~i~Glget~ed~~~~l~~l~ 192 (320)
.. ++..+.+.. ...++...+.++.+.+.|+ ++-++-++|. .+ .++.+.+..++
T Consensus 237 ~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~-~~-~~l~~sL~~l~ 304 (499)
T TIGR00284 237 VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLSP-PL-LGLLESIIRFR 304 (499)
T ss_pred ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCCc-ch-HHHHHHHHHHH
Confidence 33 333221111 2245677788888999999 4666666665 22 23555555554
No 260
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=90.99 E-value=8.8 Score=32.44 Aligned_cols=186 Identities=18% Similarity=0.219 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+.+.++.+...|.+.+-+-. -++|.++++.+ .++++|++. +.++.+-.-.++|.|-+.++
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa-----------dp~LV~~~~~~--s~lPICVSa--Vep~~f~~aV~AGAdliEIG 88 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA-----------DPELVKLAKSL--SNLPICVSA--VEPELFVAAVKAGADLIEIG 88 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC-----------CHHHHHHHHHh--CCCCeEeec--CCHHHHHHHHHhCCCEEEec
Confidence 5678899888887777887775532 14555555533 367887764 77888888999999999886
Q ss_pred -ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 136 -LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 136 -let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
.|+ .|.+ .+.-+.+++++.-++-++.=-.+...+.+=+--..++-.++...|.++| .+.+. -.+||.-
T Consensus 89 NfDs---FY~q-Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~G--aDiIQ-----TEGgtss 157 (242)
T PF04481_consen 89 NFDS---FYAQ-GRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAG--ADIIQ-----TEGGTSS 157 (242)
T ss_pred chHH---HHhc-CCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhC--CcEEE-----cCCCCCC
Confidence 444 4555 3456889999988888885222333333323345667788888888888 44332 2334432
Q ss_pred CCCCCCC---HHHHHHHHHHHHHhCCCceeec-C-CcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVE---IWEMIRMIATARIVMPKAMVRL-S-AGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~---~~e~~~~~a~~R~~~p~~~i~~-~-~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
....+-. .+...-.++.+..+....-+++ + .|. ..-...+++.+||..+=.|.
T Consensus 158 ~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGl---S~vT~PmAiaaGAsGVGVGS 215 (242)
T PF04481_consen 158 KPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGL---SAVTAPMAIAAGASGVGVGS 215 (242)
T ss_pred CCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCc---chhhHHHHHHcCCcccchhH
Confidence 2211111 1111122222222222333332 2 232 22234678999999885553
No 261
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=90.83 E-value=1.8 Score=36.88 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
..+.+.+.++.+++.|++++.-.. -+.++++.-++.|.|.|-+.-..+.+.+..-.....++++.++.+.+++.|+.+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiD-Pd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~Vn 186 (234)
T cd00003 108 QAEKLKPIIERLKDAGIRVSLFID-PDPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVN 186 (234)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 568899999999999998654332 4588999999999999887654442211111111236666777777777777664
Q ss_pred eeEEEEeCCCHHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l~ 189 (320)
.|+|-+.+.+..+..
T Consensus 187 ----AGHgLny~Nv~~i~~ 201 (234)
T cd00003 187 ----AGHGLNYENVKPIAK 201 (234)
T ss_pred ----cCCCCCHHHHHHHHh
Confidence 467878777655543
No 262
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=90.82 E-value=1.8 Score=36.76 Aligned_cols=218 Identities=12% Similarity=0.129 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
.-+.++.++.+.+.|+++++|..-+-.. ...+-+++.+++.. ...+++++-.|.-+.+.+++|..+|.|.|+++-
T Consensus 29 ~GDpVelA~~Y~e~GADElvFlDItAs~----~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINs 104 (256)
T COG0107 29 AGDPVELAKRYNEEGADELVFLDITASS----EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINS 104 (256)
T ss_pred cCChHHHHHHHHHcCCCeEEEEeccccc----ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeCh
Confidence 3456777888888999999886432222 23456677777766 567888888999999999999999999999875
Q ss_pred ccc--HHHHhhhCCCCCHHHHHHHHHHHHH-cCCeeeeeEEEEe---CCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 137 DTS--REFYSKIITTRSYDERLETLKHVRE-AGINVCSGGIIGL---GEAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 137 et~--~~~~~~i~~~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Gl---get~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
... |++...+......+-++=+|..-+. .| .-.-.-++-. ..+.-+..+-.+...++| .-.+-++. +-..
T Consensus 105 aAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g-~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~G--AGEIlLts-mD~D 180 (256)
T COG0107 105 AAVKDPELITEAADRFGSQCIVVAIDAKRVPDG-ENGWYEVFTHGGREDTGLDAVEWAKEVEELG--AGEILLTS-MDRD 180 (256)
T ss_pred hHhcChHHHHHHHHHhCCceEEEEEEeeeccCC-CCCcEEEEecCCCcCCCcCHHHHHHHHHHcC--CceEEEee-eccc
Confidence 443 3332222110000000000000000 01 0000112212 233345566666667777 33444433 3344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcC-CceEeeCCccccCCCCChhHHHHHHHH
Q 020848 211 GTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAG-ANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 211 gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~G-an~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
||... .+.+. ++ ..+....=+.| .++|-.+. .. -..+|..| |+...... +..-..-+..++.+.+.+
T Consensus 181 Gtk~G----yDl~l-~~---~v~~~v~iPvI-ASGGaG~~-eh-f~eaf~~~~adAaLAAs-iFH~~~~~i~evK~yL~~ 248 (256)
T COG0107 181 GTKAG----YDLEL-TR---AVREAVNIPVI-ASGGAGKP-EH-FVEAFTEGKADAALAAS-IFHFGEITIGEVKEYLAE 248 (256)
T ss_pred ccccC----cCHHH-HH---HHHHhCCCCEE-ecCCCCcH-HH-HHHHHHhcCccHHHhhh-hhhcCcccHHHHHHHHHH
Confidence 66532 22221 22 22222221222 23333221 12 24455555 44333222 223344678999999999
Q ss_pred cCCCcC
Q 020848 290 LGLTPK 295 (320)
Q Consensus 290 ~G~~p~ 295 (320)
.|+.+.
T Consensus 249 ~gi~VR 254 (256)
T COG0107 249 QGIEVR 254 (256)
T ss_pred cCCCcc
Confidence 998764
No 263
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=1.2 Score=40.72 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCe--eeeeEEEEeCCCHHHHHHHHHHHhc
Q 020848 117 EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGIN--VCSGGIIGLGEAEEDRVGLLHTLAT 193 (320)
Q Consensus 117 ~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~--v~~~~i~Glget~ed~~~~l~~l~~ 193 (320)
+-+.++.+.++|+|.|.++...+ -+.+. ..-+.+++.+.++.++++|.+ +.++... +.+..+.+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a---~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~-~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRA---LNFSVEDLAEAVELAHSAGKKVYVAVNTLL-HNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCccccccccc---ccCCHHHHHHHHHHHHHcCCeEEEEecccc-ccchhhHHHHHHHHHHH
Confidence 45778888888999999998643 22211 135788899999999999987 4444444 46677778899999999
Q ss_pred CCCCCCeeee
Q 020848 194 LPTHPESVPI 203 (320)
Q Consensus 194 l~~~~~~v~~ 203 (320)
+| ++.|-+
T Consensus 91 ~G--vDaviv 98 (347)
T COG0826 91 LG--VDAVIV 98 (347)
T ss_pred cC--CCEEEE
Confidence 88 444443
No 264
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=90.66 E-value=27 Score=37.48 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=116.9
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecccCCCCCCchhHHHHHHHHHHhhh----cCceEEEe--C--CC--CC----HH
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGMEVCCT--L--GM--LE----KH 119 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~----~~~~i~~~--~--g~--l~----~e 119 (320)
+..++++..+..+.+. |+-.+-.-||-+...--..+.++=++-++.+++ ..+..+.. | |. .. +.
T Consensus 550 ~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~ 629 (1143)
T TIGR01235 550 VRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKY 629 (1143)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHH
Confidence 5677888888777663 776666554422110000111223344444442 22332222 1 21 22 34
Q ss_pred HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE-------e-CCCHHHHHHHHHHH
Q 020848 120 QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-------L-GEAEEDRVGLLHTL 191 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-------l-get~ed~~~~l~~l 191 (320)
.++..++.|+|.+.+. | . -.+.+....+++.+++.|..+...+.+- . ..+.+-+.++++.+
T Consensus 630 f~~~~~~~Gidifrif-D-------~---lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l 698 (1143)
T TIGR01235 630 FVKQAAQGGIDIFRVF-D-------S---LNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVEL 698 (1143)
T ss_pred HHHHHHHcCCCEEEEC-c-------c---CcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHH
Confidence 4555567788877662 2 2 2456666888999999999887777763 1 23677788888888
Q ss_pred hcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCC-cccccChhHHHHHHHcCCceEeeCC
Q 020848 192 ATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSA-GRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 192 ~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~-g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.++| ++.+.+ ++|. ....+.+...++...|..+. ..+.+-+ ...++....-..++.+||+.+-..-
T Consensus 699 ~~~G--ad~I~i------kDt~----Gll~P~~~~~Lv~~lk~~~~-~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai 765 (1143)
T TIGR01235 699 EKAG--AHILGI------KDMA----GLLKPAAAKLLIKALREKTD-LPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAV 765 (1143)
T ss_pred HHcC--CCEEEE------CCCc----CCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCCcHHHHHHHHHHhCCCEEEecc
Confidence 9998 555543 2321 23567777777777766552 2222210 0011222223567899999873221
Q ss_pred -ccc-cCCCCChhHHHHHHHHcCCC
Q 020848 271 -KLL-TTPNNDFDADQLMFKVLGLT 293 (320)
Q Consensus 271 -~~~-~~~~~~~~~~~~~i~~~G~~ 293 (320)
++. .+..++.+.++.+++..|+.
T Consensus 766 ~gl~G~ts~p~~e~~v~~L~~~~~~ 790 (1143)
T TIGR01235 766 DSMSGLTSQPSLGAIVAALEGSERD 790 (1143)
T ss_pred hhhcCCCCCHhHHHHHHHHHhCCCC
Confidence 121 11224577777888777654
No 265
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.46 E-value=2.8 Score=36.17 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=49.8
Q ss_pred HHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 64 AAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 64 ~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.++.+.+ .|++.+++..=+....+.+..+ ++++++. ..++++.+-.|..+.+.++++.++|++++.++-.+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~----~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~ 109 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQHAREF----DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI 109 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCCcchH----HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence 4555566 5899999864322212333333 3444443 456888889999999999999999999998876554
No 266
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=90.36 E-value=2.2 Score=36.49 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
..+.+.+.++.+++.|++++.=.. -+.++++.-++.|.|.|-+.-..+...+..-.....++++.++.+.+++.|+.+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSLFiD-P~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn 186 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSLFID-ADKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAHSLGLKVN 186 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEEe
Confidence 567899999999998998643322 3589999999999999988654442211110001235666677777777776654
Q ss_pred eeEEEEeCCCHHHHHHHH
Q 020848 171 SGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 171 ~~~i~Glget~ed~~~~l 188 (320)
.|+|-+.+.+..+.
T Consensus 187 ----AGHgLny~Nv~~i~ 200 (237)
T TIGR00559 187 ----AGHGLNYHNVKYFA 200 (237)
T ss_pred ----cCCCCCHHhHHHHH
Confidence 56777777665544
No 267
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=89.97 E-value=2.8 Score=36.31 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
+.++.++.+.+.|++.+++..=+....|.+..+ ++++.+.+.-+++.+-.|..+.+.++.+.++|++++.++-.+.
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~----~~i~~i~~~~~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKAIENSVENL----PVLEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcccCCcchH----HHHHHHHhhcCcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 445556666679999999875321112434333 3344443211567888899999999999999999998876554
No 268
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=89.90 E-value=6.4 Score=33.26 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC----chhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhcc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR----KTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGL 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge----~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGl 129 (320)
.+.+++++.++...+.|+.-+-++++...++.. ...++.+.++++.+++ .++.+++. ....+.++.-.++|.
T Consensus 16 ~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--T~~~~v~~~aL~~g~ 93 (210)
T PF00809_consen 16 FSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--TFNPEVAEAALKAGA 93 (210)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--ESSHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--CCCHHHHHHHHHcCc
Confidence 567889999999999999999998765433322 2355677777777774 35544332 233445444444455
Q ss_pred Cee
Q 020848 130 TAY 132 (320)
Q Consensus 130 d~v 132 (320)
+.+
T Consensus 94 ~~i 96 (210)
T PF00809_consen 94 DII 96 (210)
T ss_dssp SEE
T ss_pred ceE
Confidence 544
No 269
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=89.56 E-value=12 Score=31.92 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.++.++.+.+.|++.+++..-+..-.+.+..+ ++++.+. ..++++....|..+.+.++.+.++|++.+-++-
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~----~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~ 104 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLF----ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINT 104 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCH----HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 334445555678999988864322211222333 3334443 346788899999999999999999999988774
No 270
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=89.50 E-value=12 Score=33.52 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCC-----C-----C-----HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHH
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGM-----L-----E-----KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERL 156 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~-----l-----~-----~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l 156 (320)
-..+...|+.+|+.|..+.++.|- + + ....+.+...|+|.|-+.+|... .......+.+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~-----~~d~~~~~~~~ 127 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGA-----LTDTAAIDRRA 127 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCc-----cccchhHHHHH
Confidence 345677788888777776655431 1 1 23345567779999999998752 11123467778
Q ss_pred HHHHHHHHc--CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 157 ETLKHVREA--GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 157 ~~i~~a~~~--Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
++|+.+++. ++.+..++-+.. |-+. +-.++++.++..|..++.|.++.+-
T Consensus 128 ~al~~Lq~~~p~l~vs~Tlp~~p~gl~~-~g~~~l~~a~~~Gv~~d~VNiMtmD 180 (294)
T cd06543 128 QALALLQKEYPDLKISFTLPVLPTGLTP-DGLNVLEAAAANGVDLDTVNIMTMD 180 (294)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCCh-hHHHHHHHHHHcCCCcceeeeeeec
Confidence 888888875 555666654433 3332 3356777778777656777777664
No 271
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=89.49 E-value=13 Score=32.26 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.++ ++.+.+.|+.-+-+.+- |.+|..=.+.++.++ ...+++..-.-..++-++.+-+.+|.|.|.+
T Consensus 66 ~dp~~i---a~~Ye~~GAa~iSVLTd-------~~~F~Gs~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLL 135 (254)
T COG0134 66 FDPVEI---AKAYEEGGAAAISVLTD-------PKYFQGSFEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLL 135 (254)
T ss_pred CCHHHH---HHHHHHhCCeEEEEecC-------ccccCCCHHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHH
Confidence 456554 44556677877766542 334434444556665 4578887777779999999999999999887
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
-+... +-++..+.+..+++.|+.+ ++- -.+.+|+...++ ++ ...|+++.- .+
T Consensus 136 I~~~L-----------~~~~l~el~~~A~~LGm~~----LVE-Vh~~eEl~rAl~----~g--a~iIGINnR------dL 187 (254)
T COG0134 136 IVAAL-----------DDEQLEELVDRAHELGMEV----LVE-VHNEEELERALK----LG--AKIIGINNR------DL 187 (254)
T ss_pred HHHhc-----------CHHHHHHHHHHHHHcCCee----EEE-ECCHHHHHHHHh----CC--CCEEEEeCC------Cc
Confidence 65444 2223345567888999875 332 236666655553 55 556666542 22
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecC-CcccccChhHHHHHHHcCCceEeeCCccccCCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLS-AGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN 277 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~-~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~ 277 (320)
... ..+.+ ........+|...+.++ +|-. .+..-......|+|.+++|+.++.+..
T Consensus 188 ~tf-~vdl~----~t~~la~~~p~~~~~IsESGI~--~~~dv~~l~~~ga~a~LVG~slM~~~~ 244 (254)
T COG0134 188 TTL-EVDLE----TTEKLAPLIPKDVILISESGIS--TPEDVRRLAKAGADAFLVGEALMRADD 244 (254)
T ss_pred chh-eecHH----HHHHHHhhCCCCcEEEecCCCC--CHHHHHHHHHcCCCEEEecHHHhcCCC
Confidence 221 12222 23333445666555554 2211 133334556789999999986665444
No 272
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.49 E-value=3.6 Score=37.52 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 93 NQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
+.+.+.++.+.+.|.. +.-|.|.++++.+.++..
T Consensus 143 e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~ 179 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVR 179 (333)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHH
Confidence 4555555555544433 234456665555554433
No 273
>PRK13753 dihydropteroate synthase; Provisional
Probab=89.48 E-value=6.6 Score=34.77 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccC
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld 130 (320)
.++++.+++.++.+.+.|+.-|-+++...-++.++ ..++.+...|+.+++.+.. ++......+.++.-.++|+|
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~--ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR--VSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc--EEEECCCHHHHHHHHHcCCC
Confidence 37899999999999999998888877443333222 2356677888888865544 34456778888888889987
Q ss_pred eec
Q 020848 131 AYN 133 (320)
Q Consensus 131 ~v~ 133 (320)
.|+
T Consensus 99 iIN 101 (279)
T PRK13753 99 YLN 101 (279)
T ss_pred EEE
Confidence 654
No 274
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.44 E-value=4.4 Score=35.62 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccc----------------------CCCCCC-chhHHHHHHHHHHhhh-cCceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAW----------------------RDTIGR-KTNFNQILEYVKDIRD-MGMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~----------------------~~~~ge-~~~~~~l~~~i~~~k~-~~~~i~~ 111 (320)
+++||..+..+.+.+.|+..+.+.+.. .++.|. ....+.+.++++.+|+ .+.++.+
T Consensus 128 LP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v 207 (263)
T CHL00200 128 LPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL 207 (263)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE
Confidence 778888888888888888777665211 112222 1234667777777774 4667777
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+.+.++.+.++|.|.+-++
T Consensus 208 GFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 208 GFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred ECCcCCHHHHHHHHhcCCCEEEEC
Confidence 777788999999999999988776
No 275
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.39 E-value=7.8 Score=34.66 Aligned_cols=79 Identities=22% Similarity=0.230 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC---------------CCC--CchhHHHHHHHHHHhhh-cCceEEEeCCCCCH
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIG--RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 118 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~---------------~~g--e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~ 118 (320)
+.+++.+.++.+.+.|++.+.+.++... .+| .|...+.-++.+..+++ .++++..+.|..+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~ 246 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSF 246 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCH
Confidence 4577888888888899999887532110 000 01122233566677764 57888888899999
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++..+|+|.|.++
T Consensus 247 ~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 247 EDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHcCCCceeec
Confidence 99999988999998886
No 276
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.37 E-value=4 Score=34.13 Aligned_cols=100 Identities=17% Similarity=0.154 Sum_probs=61.0
Q ss_pred HHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhh-CCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 95 ILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKI-ITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 95 l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i-~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
+.++|+...+ -+..+.......+.+.+..|.-.|=..+..|+.+- ++-+.. ++..++++++++++.+.++|++|+.+
T Consensus 12 l~~~I~ff~~~~~~~lef~TK~~nv~~Ll~l~~~~~t~~rfSlnp~-~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~~ 90 (199)
T TIGR00620 12 LKRAIEHFGQSDFGKLRFVTKFHHVDHLLDAKHNGKTRFRFSINAD-YVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGFI 90 (199)
T ss_pred HHHHHHHHccCCCcEEEEEEcccchhhHhcCCCCCCEEEEEEeCHH-HHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3334444432 23334333344555666666666655666666553 222222 24678999999999999999997766
Q ss_pred E--EEEeCCCHHHHHHHHHHHh-cCC
Q 020848 173 G--IIGLGEAEEDRVGLLHTLA-TLP 195 (320)
Q Consensus 173 ~--i~Glget~ed~~~~l~~l~-~l~ 195 (320)
+ |+-...+.++..++++.+. .+.
T Consensus 91 ~~PIi~~egW~e~Y~~l~~~l~~~l~ 116 (199)
T TIGR00620 91 IAPIYIHEGWKEGYRNLLEKLDEALP 116 (199)
T ss_pred eeceEeeCChHHHHHHHHHHHHHhCC
Confidence 5 4433456667788888775 454
No 277
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=89.27 E-value=2 Score=36.53 Aligned_cols=94 Identities=17% Similarity=0.213 Sum_probs=67.4
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEE-------EEe-CC-CH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGI-------IGL-GE-AE 181 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i-------~Gl-ge-t~ 181 (320)
++++..-.|.+..-|++|.|.|.+|+|-.++.+.++ .-+-+++++..+.+.+.|+.+.+-++ +|. .+ +.
T Consensus 14 lp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRL--DWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r 91 (287)
T COG3623 14 LPNGFSWLERLALAKELGFDFVEMSVDESDERLARL--DWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATR 91 (287)
T ss_pred ccCCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhc--CCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHH
Confidence 556777799999999999999999999997666665 45678889999999999987654443 333 11 11
Q ss_pred HH----HHHHHHHHhcCCCCCCeeeeeeeee
Q 020848 182 ED----RVGLLHTLATLPTHPESVPINALLA 208 (320)
Q Consensus 182 ed----~~~~l~~l~~l~~~~~~v~~~~~~p 208 (320)
+. +...+.+++++| +..|.+-.|-.
T Consensus 92 ~~aleiM~KaI~LA~dLG--IRtIQLAGYDV 120 (287)
T COG3623 92 QQALEIMEKAIQLAQDLG--IRTIQLAGYDV 120 (287)
T ss_pred HHHHHHHHHHHHHHHHhC--ceeEeecccee
Confidence 22 344566778888 66777765543
No 278
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=89.22 E-value=5.2 Score=36.10 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCC--CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHH-HhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELK-KAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~--~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~-~aGld~v~ 133 (320)
.++..+.++.+.+.|++.+.+.+..... .|.+.. ++.++++| ..++++..+.+..+.+.++++. ..|+|.|.
T Consensus 147 ~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~----~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 147 GERKFEIADAVQQAGATELVVHGRTKEDGYRAEHIN----WQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred chHHHHHHHHHHhcCCCEEEECCCCCccCCCCCccc----HHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 3557777788888999999886543211 111112 25666776 3578888888888888888865 57899999
Q ss_pred cCcccc--HHHHhhh
Q 020848 134 HNLDTS--REFYSKI 146 (320)
Q Consensus 134 i~let~--~~~~~~i 146 (320)
++=-.. |.+++++
T Consensus 223 iGRg~l~nP~lf~~~ 237 (312)
T PRK10550 223 IGRGALNIPNLSRVV 237 (312)
T ss_pred EcHHhHhCcHHHHHh
Confidence 974333 4555554
No 279
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.21 E-value=3 Score=35.05 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+++...++.+.+.|.+-|...+|..+. +...+++..+.+.++ ..+.+-+..|..+.+.+.++.++|.+++.
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~---~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPG---GATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCC---CCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 345555555555555565555544332211 122232222222222 23344445555555666666666655543
No 280
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.00 E-value=12 Score=31.06 Aligned_cols=176 Identities=15% Similarity=0.090 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCC--CCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLG--MLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g--~l~~e~l~~L~~aGld~ 131 (320)
.++|+..+.++.+.+. ++-+-++. |.....=.+.++.+++. ++.+....- ......++.+.++|.|.
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~--------~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~ 80 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGT--------PLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADI 80 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCC--------HHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCE
Confidence 6788999988888877 77775532 22222224555565542 444332211 12234578899999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..++. .+...+.++.+++.|+++.+.+ ++ -.|.++... +...+ .+.+.+++-.. ++
T Consensus 81 i~~h~~~~------------~~~~~~~i~~~~~~g~~~~v~~-~~-~~t~~e~~~----~~~~~--~d~v~~~~~~~-~~ 139 (202)
T cd04726 81 VTVLGAAP------------LSTIKKAVKAAKKYGKEVQVDL-IG-VEDPEKRAK----LLKLG--VDIVILHRGID-AQ 139 (202)
T ss_pred EEEEeeCC------------HHHHHHHHHHHHHcCCeEEEEE-eC-CCCHHHHHH----HHHCC--CCEEEEcCccc-cc
Confidence 98865442 1223455677778887653321 22 346666654 33344 56665532110 11
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
+ .. .....+.+.+.... ++..+-..+ ++.++.-...+.+|++.+..|..+
T Consensus 140 ~-~~--~~~~~~~i~~~~~~-----~~~~i~~~G---GI~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 140 A-AG--GWWPEDDLKKVKKL-----LGVKVAVAG---GITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred c-cC--CCCCHHHHHHHHhh-----cCCCEEEEC---CcCHHHHHHHHhcCCCEEEEeehh
Confidence 1 11 12233332222221 333333333 233444467788999999888644
No 281
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=88.96 E-value=3.6 Score=35.28 Aligned_cols=120 Identities=11% Similarity=0.144 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccc----CCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAW----RDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~----~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
.+|+++.+.. ..-..++|+=-. +.-+| -....+.+-+.++.+++.|++++.=.. -+.++++.-++.|.|+
T Consensus 75 ~~em~~ia~~---~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~ 150 (239)
T PRK05265 75 TEEMLDIALE---VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADR 150 (239)
T ss_pred CHHHHHHHHH---CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCE
Confidence 3566665554 334567775100 00011 013568899999999988988643322 5689999999999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHH
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 186 (320)
|-+.-..+.+.+.. .....++++..+.+.+++.|+.+. .|+|-+.+.+..
T Consensus 151 VELhTG~yA~a~~~-~~~~el~~~~~aa~~a~~lGL~Vn----AGHgLny~Nv~~ 200 (239)
T PRK05265 151 IELHTGPYADAKTE-AEAAELERIAKAAKLAASLGLGVN----AGHGLNYHNVKP 200 (239)
T ss_pred EEEechhhhcCCCc-chHHHHHHHHHHHHHHHHcCCEEe----cCCCCCHHhHHH
Confidence 98765444221211 112246666777777777777664 568878777665
No 282
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.93 E-value=15 Score=31.89 Aligned_cols=201 Identities=10% Similarity=0.041 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC-CCCchhH---HHHH-----HHHHHhhh-cCceEE--E--eCCCCCH-HH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNF---NQIL-----EYVKDIRD-MGMEVC--C--TLGMLEK-HQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~~~~---~~l~-----~~i~~~k~-~~~~i~--~--~~g~l~~-e~ 120 (320)
-+.|+..+.++.+.+. ++-+-|+-....+ .+.|... ...+ +.++.+++ .++++. + ++-.... +.
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~ 93 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNF 93 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHH
Confidence 3678888888877666 8777775322222 1123222 2222 56777763 345532 1 3322334 44
Q ss_pred HHHHHHhccCeeccC---ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCC
Q 020848 121 AIELKKAGLTAYNHN---LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTH 197 (320)
Q Consensus 121 l~~L~~aGld~v~i~---let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~ 197 (320)
++.++++|+|.+.+. +|+ .++..+.++.+++.|++.. +.+....+.+.+...+....
T Consensus 94 i~~~~~~Gadgvii~dlp~e~-------------~~~~~~~~~~~~~~Gl~~~--~~v~p~T~~e~l~~~~~~~~----- 153 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDY-------------PDDLEKYVEIIKNKGLKPV--FFTSPKFPDLLIHRLSKLSP----- 153 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCc-------------HHHHHHHHHHHHHcCCCEE--EEECCCCCHHHHHHHHHhCC-----
Confidence 899999999999884 222 2344577888999998752 34423434555555544321
Q ss_pred CCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCccccc-ChhHHHHHHHcCCceEeeCCccccC-
Q 020848 198 PESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLLTT- 275 (320)
Q Consensus 198 ~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~-~~~~~~~~~~~Gan~~~~~~~~~~~- 275 (320)
.+-+..-. |+|- .. . .....+.+...|.+.++..+-+.. ++ .++.-.....+||+.++.|..+...
T Consensus 154 --~~l~msv~--~~~g-~~---~-~~~~~~~i~~lr~~~~~~~i~v~g---GI~~~e~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 154 --LFIYYGLR--PATG-VP---L-PVSVERNIKRVRNLVGNKYLVVGF---GLDSPEDARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred --CEEEEEeC--CCCC-CC---c-hHHHHHHHHHHHHhcCCCCEEEeC---CcCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 22222333 3442 11 1 333455666677766543333332 33 2333344568999999999755421
Q ss_pred CCCChhHHHHHHHH
Q 020848 276 PNNDFDADQLMFKV 289 (320)
Q Consensus 276 ~~~~~~~~~~~i~~ 289 (320)
...+.++..+.+++
T Consensus 222 ~~~~~~~~~~~~~~ 235 (244)
T PRK13125 222 EKNGVESALNLLKK 235 (244)
T ss_pred HhcCHHHHHHHHHH
Confidence 01225555555554
No 283
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=88.91 E-value=15 Score=31.95 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.+ .++.+.+.|+..+.+.+-.+-.+| .+ +.++.++ ...+++.......++.++.+-+.+|.|.|.+
T Consensus 61 ~d~~~---~A~~y~~~GA~aISVlTe~~~F~G---s~----~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLL 130 (247)
T PRK13957 61 YHPVQ---IAKTYETLGASAISVLTDQSYFGG---SL----EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILL 130 (247)
T ss_pred CCHHH---HHHHHHHCCCcEEEEEcCCCcCCC---CH----HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEe
Confidence 45544 445667789988877553233333 22 3344444 3467888888889999999999999999976
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
-.... +.++..+-++.++..|+.+ ++- -.+.+|+...+ +.+ +..++++.-. +
T Consensus 131 I~~~L-----------~~~~l~~l~~~a~~lGle~----LVE-Vh~~~El~~a~----~~g--a~iiGINnRd------L 182 (247)
T PRK13957 131 IVRIL-----------TPSQIKSFLKHASSLGMDV----LVE-VHTEDEAKLAL----DCG--AEIIGINTRD------L 182 (247)
T ss_pred EHhhC-----------CHHHHHHHHHHHHHcCCce----EEE-ECCHHHHHHHH----hCC--CCEEEEeCCC------C
Confidence 54322 3334566678888889875 332 23666665544 355 5566766532 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN 277 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~ 277 (320)
... ..+.... .....++|...+.++.+ ++....+...+..+++.+.+|+.++.+..
T Consensus 183 ~t~-~vd~~~~----~~L~~~ip~~~~~IsES--GI~t~~d~~~l~~~~davLvG~~lm~~~d 238 (247)
T PRK13957 183 DTF-QIHQNLV----EEVAAFLPPNIVKVGES--GIESRSDLDKFRKLVDAALIGTYFMEKKD 238 (247)
T ss_pred ccc-eECHHHH----HHHHhhCCCCcEEEEcC--CCCCHHHHHHHHHhCCEEEECHHHhCCCC
Confidence 211 2233332 22344667666665521 33333223334445899999986665443
No 284
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=88.91 E-value=5.5 Score=37.90 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|.. +.| -..-..+.++++.+| ..+++ ++.++ |+-....+. -.++|++
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~D----t~G-~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~la-AieaGad 224 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKD----MAG-ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLK-AIEAGAD 224 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----CCC-CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHH-HHHcCCC
Confidence 5788899999999999999999842 222 123355666677766 33444 44443 443444444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCS 171 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~ 171 (320)
.|..++..+ +. ...-+.++++..++ ..|+++++
T Consensus 225 ~vD~sv~glg~g-----aGN~~tE~lv~~L~---~~g~~tgi 258 (448)
T PRK12331 225 IIDTAISPFAGG-----TSQPATESMVAALQ---DLGYDTGL 258 (448)
T ss_pred EEEeeccccCCC-----cCCHhHHHHHHHHH---hcCCCCCC
Confidence 998887665 22 11224555555553 34665433
No 285
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=88.89 E-value=16 Score=32.45 Aligned_cols=203 Identities=14% Similarity=0.064 Sum_probs=108.6
Q ss_pred CCCEEEEecccCC-CCCC----chhHHHHHHHHHHhh-hcCceEE--EeCCCCCH----HHHHHHHHhccCeeccCcccc
Q 020848 72 GSTRFCMGAAWRD-TIGR----KTNFNQILEYVKDIR-DMGMEVC--CTLGMLEK----HQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 72 g~~~i~l~~g~~~-~~ge----~~~~~~l~~~i~~~k-~~~~~i~--~~~g~l~~----e~l~~L~~aGld~v~i~let~ 139 (320)
|++.+.++|.+.. ..|. -..++++++.++.+. ...+++. ...| .+. ..+++|.++|+..+++-=++.
T Consensus 38 Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~ 116 (285)
T TIGR02320 38 GFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLG 116 (285)
T ss_pred CcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCC
Confidence 8888887653211 1232 345778888887776 3466643 3456 443 347888999999888844433
Q ss_pred HHHHhhhCC-----CCCHHHHHHHHHHHHHcCCeeeeeEEEE-----eCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 140 REFYSKIIT-----TRSYDERLETLKHVREAGINVCSGGIIG-----LGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 140 ~~~~~~i~~-----~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-----lget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
+.....+.. --+.++..+.|+.++++.-...+-++.. .+...++..+-.+...+.| .+.+.+ |
T Consensus 117 pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAG--AD~ifv----~- 189 (285)
T TIGR02320 117 LKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAG--ADGIMI----H- 189 (285)
T ss_pred CccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcC--CCEEEe----c-
Confidence 221111111 1367788888888776521111222222 1335677777777778888 555433 2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeec-CCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRL-SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFK 288 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~-~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~ 288 (320)
+ ...+.+++.+..+..+..+|...+.+ .+...... . ...-..|.+.+..+.......-....+..+-+.
T Consensus 190 -~------~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~--~-~eL~~lG~~~v~~~~~~~~aa~~a~~~~~~~~~ 259 (285)
T TIGR02320 190 -S------RKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTP--T-DEFRDAGISVVIYANHLLRAAYAAMQQVAERIL 259 (285)
T ss_pred -C------CCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCC--H-HHHHHcCCCEEEEhHHHHHHHHHHHHHHHHHHH
Confidence 1 12457777777776665555422222 21111111 1 223356899987765332222233455555555
Q ss_pred HcCC
Q 020848 289 VLGL 292 (320)
Q Consensus 289 ~~G~ 292 (320)
+.|-
T Consensus 260 ~~g~ 263 (285)
T TIGR02320 260 EHGR 263 (285)
T ss_pred HcCC
Confidence 5554
No 286
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.83 E-value=2.3 Score=38.91 Aligned_cols=80 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
+++++.++.++.+.+.|++-+.+.+|.......+..-....++.+.+|+ .++++..+.+..+.+.++++.+.| +|.|.
T Consensus 224 ~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 224 LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHH
Confidence 5788999988888888999998877642110000011113455566663 467777777777888888888876 88888
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 304 ~g 305 (337)
T PRK13523 304 IG 305 (337)
T ss_pred hh
Confidence 76
No 287
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=88.71 E-value=5.4 Score=34.98 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCCE-EEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc---cCe
Q 020848 59 DAVMQAAQKAKEAGSTR-FCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTA 131 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~-i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG---ld~ 131 (320)
+.+.+.++.+++.|..- +.+.... ....+++.++++.+.+.|.. +.-|.|.++++.+.+|.+.= ++.
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~------~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSH------MASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP 185 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecc------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC
Confidence 56677777778888632 2222111 12347788888887776654 34567888888877665441 111
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++.--+.+.-.+.++|.+.-=..+.|+|+
T Consensus 186 ~~l~~----------H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~ 223 (263)
T cd07943 186 TPVGF----------HGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA 223 (263)
T ss_pred ceEEE----------EecCCcchHHHHHHHHHHhCCCEEEeecccccC
Confidence 22322 223344444555555666788754445677754
No 288
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=88.65 E-value=15 Score=31.75 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc-CCCCCCchh-------------HHHHHHHHHHhhh-cCceE--EEe-CCCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAW-RDTIGRKTN-------------FNQILEYVKDIRD-MGMEV--CCT-LGML-- 116 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~-~~~~ge~~~-------------~~~l~~~i~~~k~-~~~~i--~~~-~g~l-- 116 (320)
+.+.+.+.++.+.+.|++.+.++--. .+....|.. .+...+.++.+++ ..+++ ++- +-.+
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 56889999999999999999886211 111111211 1367788888884 34442 222 1111
Q ss_pred -CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 117 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 117 -~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.++.++.++++|++.+.+.- -.+++..+.++.+++.|++.. +++...-+.+.+...+...
T Consensus 92 G~~~fi~~~~~aG~~giiipD-------------l~~ee~~~~~~~~~~~g~~~i--~~i~P~T~~~~i~~i~~~~---- 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPD-------------LPPEEAEEFREAAKEYGLDLI--FLVAPTTPDERIKKIAELA---- 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECC-------------CCHHHHHHHHHHHHHcCCcEE--EEeCCCCCHHHHHHHHhhC----
Confidence 26779999999999887731 124556677888899997652 2332232334344433221
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
...+-+....| +|.-...-. ......+...|... +..+.+.. ++. ++.......+ |+.++.|..+
T Consensus 153 --~~~vy~~s~~g--~tG~~~~~~---~~~~~~i~~lr~~~-~~pI~vgg---GI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 153 --SGFIYYVSRTG--VTGARTELP---DDLKELIKRIRKYT-DLPIAVGF---GISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred --CCCEEEEeCCC--CCCCccCCC---hhHHHHHHHHHhcC-CCcEEEEc---cCCCHHHHHHHHcc-CCEEEECHHH
Confidence 23444444444 333221111 22334444455432 33333322 223 2222344555 8988888643
No 289
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.57 E-value=6.9 Score=37.59 Aligned_cols=119 Identities=19% Similarity=0.269 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.+.+-.. .| .-..+.++++.+|+. ++.+..- ...+.+..+.|.++|+|.|.+++
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a----~~---~~~~~~~~i~~ik~~~p~~~v~ag-nv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTA----HG---HQEKMLEALRAVRALDPGVPIVAG-NVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEecc----CC---ccHHHHHHHHHHHHHCCCCeEEee-ccCCHHHHHHHHHcCCCEEEECc
Confidence 46677788888899999887432 12 236788889999854 3444331 24789999999999999998766
Q ss_pred ccc----HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHH
Q 020848 137 DTS----REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 137 et~----~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 189 (320)
=+. -..+..... ..+.-+.+..+.+++.|+++-.. |--.+..|+.+.+.
T Consensus 298 g~gsictt~~~~~~~~-p~~~av~~~~~~~~~~~~~via~---ggi~~~~~~~~al~ 350 (479)
T PRK07807 298 GPGAMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVWAD---GGVRHPRDVALALA 350 (479)
T ss_pred cCCcccccccccCCch-hHHHHHHHHHHHHHhcCCcEEec---CCCCCHHHHHHHHH
Confidence 442 112222111 24555555556666666653211 22246777777664
No 290
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=88.54 E-value=1.6 Score=38.09 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.-++.++...+.|++.++++.= .+|++... ++++++.+.++++.+--|..+ +.++.+.++|+++|.++
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDL---dgg~~~n~----~~i~~i~~~~~~vqvGGGIR~-e~i~~~l~~Ga~rViig 111 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIML---GADDASLA----AALEALRAYPGGLQVGGGVNS-ENAMSYLDAGASHVIVT 111 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEEC---CCCCcccH----HHHHHHHhCCCCEEEeCCccH-HHHHHHHHcCCCEEEEc
Confidence 3455566677799999988742 12445453 334444334567778888775 99999999999999986
No 291
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=88.51 E-value=3.2 Score=34.81 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC----CCCHHHHHHHHHhccCeec
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG----MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g----~l~~e~l~~L~~aGld~v~ 133 (320)
.+.+.+.++.+++.|++.|+|+-=. ..| ....+.+.++++.++ ++++..+-. .-..+.++.|.++|+++|.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L~--~dg-~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVL 145 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGALT--EDG-EIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVL 145 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--BE--TTS-SB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeEC--CCC-CcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEE
Confidence 3455666667778899998885321 112 245566666666665 555443321 1246678899999999886
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
-+
T Consensus 146 TS 147 (201)
T PF03932_consen 146 TS 147 (201)
T ss_dssp ES
T ss_pred CC
Confidence 53
No 292
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.27 E-value=7.2 Score=34.30 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCe-
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA- 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~- 131 (320)
-..+++.+.++.+++.|.. +.+..- ..+ + ...+.+.++++.+.+.|.. +.-|.|.++++.+.++.++=...
T Consensus 106 ~~~~~~~~~i~~ak~~G~~-v~~~~~-~a~-~--~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYE-VFFNLM-AIS-G--YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred ccHHHHHHHHHHHHHCCCe-EEEEEE-eec-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhc
Confidence 3578888888888888873 333211 111 1 3457788888888776654 45678999888887776551111
Q ss_pred ---eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 ---YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 ---v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++.--+.+...+.++|...--+.+.|+|+
T Consensus 181 ~~~~~i~~----------H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 181 DKDIKLGF----------HAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred CCCceEEE----------EeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 22332 334456555666667778898865556778865
No 293
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.13 E-value=3.5 Score=37.30 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-----chhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHh-c
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-G 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-----~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~a-G 128 (320)
.+.++.++.++.+.+.|++.+.+.++....... +.......+.++.+++ .++++..+.|..+.+.++++.+. |
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~ 304 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGK 304 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 467888888888888999888886654221100 0011334556666663 46778777777788888888887 6
Q ss_pred cCeeccC
Q 020848 129 LTAYNHN 135 (320)
Q Consensus 129 ld~v~i~ 135 (320)
+|.|.++
T Consensus 305 aD~V~ig 311 (327)
T cd02803 305 ADLVALG 311 (327)
T ss_pred CCeeeec
Confidence 8888876
No 294
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=88.08 E-value=6.5 Score=35.13 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh-HHHHHHHHHHhhhc--C-ce--EEEeCCCC-C----HHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-FNQILEYVKDIRDM--G-ME--VCCTLGML-E----KHQAIEL 124 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-~~~l~~~i~~~k~~--~-~~--i~~~~g~l-~----~e~l~~L 124 (320)
.+..++...++.+.+.|++.|+..+|+.+.++.|.. +.+-.++++.+|.. + +. +..++..- . ...+..|
T Consensus 89 ~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~~~~~~f~i~~A~~Pe~h~~s~~~~~d~~~l 168 (291)
T COG0685 89 RNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKKMRGGIFDIGVAAYPEGHPESKDVKEDIKRL 168 (291)
T ss_pred CCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHHhcCCeEEEEEEeCCCCCccchhhHHHHHHH
Confidence 688999999999999999999988877653333323 44566666666632 2 33 33333221 2 3344445
Q ss_pred H---HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 125 K---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 125 ~---~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
+ ++|.|++ ..+. -.+.+.+.+-.+.++++|+.
T Consensus 169 krKv~aGAd~~----------iTQ~--~fd~e~~~~~~~~~~~~g~~ 203 (291)
T COG0685 169 KRKVDAGADFF----------ITQF--FFDVEAFERFAERVRAAGID 203 (291)
T ss_pred HHHHhcchHHH----------HHHH--ccCHHHHHHHHHHHHhcCCC
Confidence 4 3444432 2222 24666677777778888864
No 295
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=88.06 E-value=3.7 Score=36.02 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCC-------HHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE-------KHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~-------~e~l~~L~~aG 128 (320)
.++++.+ ..+.+.|+++|++++- +...| .-++++.+.++..+...-.+.+..-+|. .+.++++.++=
T Consensus 58 ~~~~eaL---~~L~~~G~~~V~VQpl-hiipG--~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL 131 (262)
T PF06180_consen 58 DSPEEAL---AKLADEGYTEVVVQPL-HIIPG--EEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEAL 131 (262)
T ss_dssp --HHHHH---HHHHHCT--EEEEEE---SCSS--HHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHCCCCEEEEeec-ceeCc--HhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHH
Confidence 3455544 4556799999999865 33334 3566777777665532223433333343 77777776652
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHH-HHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHV-REAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL 207 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a-~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~ 207 (320)
.+.+.-.-+.-.-++-.....+........++.. .+.|.+ ++.+|.-|..-++.+.+..+++.+ +..|.+.||+
T Consensus 132 ~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~---~v~vgtvEG~P~~~~vi~~L~~~g--~k~V~L~PlM 206 (262)
T PF06180_consen 132 AEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYP---NVFVGTVEGYPSLEDVIARLKKKG--IKKVHLIPLM 206 (262)
T ss_dssp HCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-T---TEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEES
T ss_pred HHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCC---eEEEEEeCCCCCHHHHHHHHHhcC--CCeEEEEecc
Confidence 2222100000001122222233334455555553 344432 345555232334677777777776 7789999999
Q ss_pred ecCCC
Q 020848 208 AVKGT 212 (320)
Q Consensus 208 p~~gt 212 (320)
-+.|.
T Consensus 207 lVAGd 211 (262)
T PF06180_consen 207 LVAGD 211 (262)
T ss_dssp SS--H
T ss_pred cccch
Confidence 88864
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.93 E-value=18 Score=31.68 Aligned_cols=186 Identities=13% Similarity=0.172 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc-------------hhHHHHHHHHHHhhh--cCceE-E--EeCCCCC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIRD--MGMEV-C--CTLGMLE 117 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~-------------~~~~~l~~~i~~~k~--~~~~i-~--~~~g~l~ 117 (320)
+++.-.+.++.+.+.|++-+-|+-...++. ..| ...+.+++.++.+++ .++++ . ..|-.+.
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~ 101 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFR 101 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhh
Confidence 678888888888889999888864221111 112 123678888998884 34442 1 2222222
Q ss_pred ---HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 118 ---KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 118 ---~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
++.++.++++|++.+.+.-. .+++..+.++.+++.|+... +++...-+.+.+...++...
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl-------------p~ee~~~~~~~~~~~gl~~i--~lv~P~T~~eri~~i~~~~~-- 164 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL-------------PLEESGDLVEAAKKHGVKPI--FLVAPNADDERLKQIAEKSQ-- 164 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC-------------ChHHHHHHHHHHHHCCCcEE--EEECCCCCHHHHHHHHHhCC--
Confidence 67799999999999887532 34555677888899998652 34423334455555554321
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
..+.+.......|.. ... ..+....++..|...+.. +-+. .++. ++.......+||+.++.|..+
T Consensus 165 ----gfiy~vs~~G~TG~~----~~~-~~~~~~~i~~lr~~~~~p-i~vg---fGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 165 ----GFVYLVSRAGVTGAR----NRA-ASALNELVKRLKAYSAKP-VLVG---FGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred ----CCEEEEECCCCCCCc----ccC-ChhHHHHHHHHHhhcCCC-EEEe---CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 123333322222221 111 122455556666554332 2222 2233 344456678899999998644
No 297
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=87.91 E-value=15 Score=31.32 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC--CCCHHHHHHHHHhccCeeccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG--MLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g--~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+-+++.++.+++.|++.++++.-+ ..| ....+.+.++++....+++.+..--. .-..+.++.|.+.|+.+|.-+
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~lt--~dg-~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs 148 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGALT--ADG-NIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS 148 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeeec--CCC-ccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence 3445666677788999999886532 112 35667777777766643332211000 114677999999999988764
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHH
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 190 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 190 (320)
= ...+..+-+..++.+.+.. +=.+.+|.|-|-+.+.+.++...
T Consensus 149 G-----------g~~sa~eg~~~l~~li~~a-~gri~Im~GaGV~~~N~~~l~~~ 191 (241)
T COG3142 149 G-----------GKASALEGLDLLKRLIEQA-KGRIIIMAGAGVRAENIAELVLL 191 (241)
T ss_pred C-----------CcCchhhhHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHh
Confidence 2 1223333344444443321 12345688888887777666543
No 298
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=87.87 E-value=7.2 Score=38.46 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+| ..+++ ++.+ .|.-....+. -.++|+|
T Consensus 151 ~t~e~~~~~ak~l~~~Gad~I~IkD----taG-~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~la-AieaGad 224 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGCDSIAIKD----MAG-LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYE-AVLAGCN 224 (596)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC----ccc-CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHH-HHHhCCC
Confidence 6899999999999999999999942 222 123356777777777 33554 3333 3433333343 4588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.+.
T Consensus 225 ~iD~ai~gl 233 (596)
T PRK14042 225 HIDTAISSF 233 (596)
T ss_pred EEEeccccc
Confidence 998887665
No 299
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.73 E-value=5.1 Score=34.49 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..=+.. .+.+... ++++++.+ ...++.+-.|..+.+.++++.++|++++.++-.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a-~~~~~n~----~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA-EGVGNNE----MYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-CCCcchH----HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchh
Confidence 4455566667799999998653211 1333333 55555543 2236788889999999999999999999887655
Q ss_pred c--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-----EEEeC--CCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 139 S--REFYSKIITTRSYDERLETLKHVREAGINVCSGG-----IIGLG--EAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 139 ~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-----i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
. ++.++. ..+..-...+-+.+++ ++-.| ++.-++.+.++.+.+++ +..+-+... -.
T Consensus 106 ~~~p~~~~~------------~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g--~~~ii~tdI-~~ 170 (232)
T PRK13586 106 FTNFNLFHD------------IVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELE--LLGIIFTYI-SN 170 (232)
T ss_pred hCCHHHHHH------------HHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcC--CCEEEEecc-cc
Confidence 4 233322 2222211011122222 22112 22235667777788887 434333322 23
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.||. ..++.+- ++.+. .. +.. +-+++|-.+. .+. ......|++.++.|..+
T Consensus 171 dGt~----~G~d~el-~~~~~---~~-~~~-viasGGv~s~-~Dl-~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 171 EGTT----KGIDYNV-KDYAR---LI-RGL-KEYAGGVSSD-ADL-EYLKNVGFDYIIVGMAF 221 (232)
T ss_pred cccC----cCcCHHH-HHHHH---hC-CCC-EEEECCCCCH-HHH-HHHHHCCCCEEEEehhh
Confidence 3553 2344442 33332 22 444 3345443332 232 23345699988877543
No 300
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=87.58 E-value=7.1 Score=36.19 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHH
Q 020848 149 TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRM 228 (320)
Q Consensus 149 ~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~ 228 (320)
..++++..+..+.+++.|--+..-+-+ |+-.+|+..-++...+++ ++ .|+ +.|-||.. ..-..+.+.+.
T Consensus 202 aApldE~~~Va~~Akk~gkGveaI~~v--GDGyddLI~G~~a~id~~--vD-----vfV-vEGgPFN~-a~dRl~aFaka 270 (505)
T PF10113_consen 202 AAPLDEMEEVAELAKKYGKGVEAIMHV--GDGYDDLITGLKACIDMG--VD-----VFV-VEGGPFNR-AKDRLKAFAKA 270 (505)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEEe--cCChHHHHHHHHHHHhcC--Cc-----EEE-EeCCCccc-chhHHHHHHHH
Confidence 347888899999999988555544444 677889999999999997 33 233 45777754 33446677888
Q ss_pred HHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC---C--ccc----c-C---CCCChhHHHHHHHHc-----
Q 020848 229 IATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG---E--KLL----T-T---PNNDFDADQLMFKVL----- 290 (320)
Q Consensus 229 ~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~---~--~~~----~-~---~~~~~~~~~~~i~~~----- 290 (320)
++.+|.+.|...+-.-+.+ ++.-..+|.+|-|.+++| + +|+ . + +.-....+.+++++.
T Consensus 271 Va~sRIL~pGkVVaTNGAY----EDEcRiGLRsGLN~iitGFp~NHHGYMcGYsPgtArRg~FGLPRV~~ImkeEv~~~~ 346 (505)
T PF10113_consen 271 VAASRILVPGKVVATNGAY----EDECRIGLRSGLNVIITGFPKNHHGYMCGYSPGTARRGNFGLPRVMKIMKEEVANGL 346 (505)
T ss_pred HHHheeeecCcEEecCCcc----hHHHHHHHhhccceeeccCCCCCcceeccCCCCccccccCCcHHHHHHHHHHHhcCC
Confidence 8999988887554322111 234467899999999665 1 122 1 1 112466677777664
Q ss_pred CCCcCCCC
Q 020848 291 GLTPKAPS 298 (320)
Q Consensus 291 G~~p~~~~ 298 (320)
...|++|+
T Consensus 347 ~~~p~~k~ 354 (505)
T PF10113_consen 347 TPVPAQKE 354 (505)
T ss_pred CcccccHH
Confidence 45555554
No 301
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.24 E-value=20 Score=31.46 Aligned_cols=172 Identities=20% Similarity=0.224 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
++.+.++.+...|+..+.+.+-....+| =.+.++.++ ..++++....-..++-++...+++|.|.|.+....
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g-------~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQG-------SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCC-------CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 4556667777789988876543222223 244455555 34677766555577889999999999999986533
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCC
Q 020848 139 SREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 139 ~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
. +.++..+.++.+++.|+.+ ++-. .+.+|+.. +.++| ++.+.++.. .+...
T Consensus 144 l-----------~~~~l~~li~~a~~lGl~~----lvev-h~~~E~~~----A~~~g--adiIgin~r------dl~~~- 194 (260)
T PRK00278 144 L-----------DDEQLKELLDYAHSLGLDV----LVEV-HDEEELER----ALKLG--APLIGINNR------NLKTF- 194 (260)
T ss_pred C-----------CHHHHHHHHHHHHHcCCeE----EEEe-CCHHHHHH----HHHcC--CCEEEECCC------Ccccc-
Confidence 2 2245567778888888654 3322 25556533 44666 666665421 11111
Q ss_pred CCCHHHHHHHHHHHHHhCCCceeecCCccccc-ChhHHHHHHHcCCceEeeCCccc
Q 020848 219 PVEIWEMIRMIATARIVMPKAMVRLSAGRVRF-SMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 219 ~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~-~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
.++.+... .+.+ .+|.....++-| ++ .++.......+|++.+..|..+.
T Consensus 195 ~~d~~~~~---~l~~-~~p~~~~vIaeg--GI~t~ed~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 195 EVDLETTE---RLAP-LIPSDRLVVSES--GIFTPEDLKRLAKAGADAVLVGESLM 244 (260)
T ss_pred cCCHHHHH---HHHH-hCCCCCEEEEEe--CCCCHHHHHHHHHcCCCEEEECHHHc
Confidence 22333222 2222 345432233211 22 23444567788999999987554
No 302
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.15 E-value=22 Score=32.64 Aligned_cols=127 Identities=18% Similarity=0.101 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCC--chhHHHHHHHHHHhhhcCceEE--Ee----CCCCC--HHHHHHHHHhccCe
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGR--KTNFNQILEYVKDIRDMGMEVC--CT----LGMLE--KHQAIELKKAGLTA 131 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge--~~~~~~l~~~i~~~k~~~~~i~--~~----~g~l~--~e~l~~L~~aGld~ 131 (320)
++.++.+.+.|++.|+++......-+. ....+++.+.++.+++.|.++. +| ++.+. .+.++.|.+.|+|.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCE
Confidence 444566667899999987531111111 2566889999999998887632 22 22223 57789999999999
Q ss_pred eccCcccc----HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHH
Q 020848 132 YNHNLDTS----REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTL 191 (320)
Q Consensus 132 v~i~let~----~~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l 191 (320)
|-++-=+. .+.+..+.- ....-.-.++++.+++.|... ++.-..-+.+++.++.+.+
T Consensus 96 viv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~r---vVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 96 VIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKR---VVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred EEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEE---EEeCccCCHHHHHHHHHhC
Confidence 98763222 222211111 111122247788899998542 1221244777777777665
No 303
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=87.11 E-value=7.2 Score=32.25 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc-HHHH
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS-REFY 143 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~-~~~~ 143 (320)
++.+.+.|++-+.+-...+ +.. +.+.++++.+|+.+..++.. ..+.|+...-.++|+|.|.-.+-++ +..-
T Consensus 57 v~~l~~aGadIIAlDaT~R-----~Rp-~~l~~li~~i~~~~~l~MAD--ist~ee~~~A~~~G~D~I~TTLsGYT~~t~ 128 (192)
T PF04131_consen 57 VDALAEAGADIIALDATDR-----PRP-ETLEELIREIKEKYQLVMAD--ISTLEEAINAAELGFDIIGTTLSGYTPYTK 128 (192)
T ss_dssp HHHHHHCT-SEEEEE-SSS-----S-S-S-HHHHHHHHHHCTSEEEEE---SSHHHHHHHHHTT-SEEE-TTTTSSTTST
T ss_pred HHHHHHcCCCEEEEecCCC-----CCC-cCHHHHHHHHHHhCcEEeee--cCCHHHHHHHHHcCCCEEEcccccCCCCCC
Confidence 4455668998888865322 222 77888888998766444443 3567888899999999999988887 5432
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 144 SKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 144 ~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
. .+.+ ++.++.+.+.++++ +.=|.-.++++..+.+
T Consensus 129 ~---~~pD----~~lv~~l~~~~~pv---IaEGri~tpe~a~~al 163 (192)
T PF04131_consen 129 G---DGPD----FELVRELVQADVPV---IAEGRIHTPEQAAKAL 163 (192)
T ss_dssp T---SSHH----HHHHHHHHHTTSEE---EEESS--SHHHHHHHH
T ss_pred C---CCCC----HHHHHHHHhCCCcE---eecCCCCCHHHHHHHH
Confidence 2 1223 35566666666552 2224446777766655
No 304
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=87.10 E-value=1.7 Score=37.26 Aligned_cols=182 Identities=17% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
-+|.+ .++.+.+.|++.+++..=+....| ...-.++++.+. ..++++.+-.|..+.+.+++|.++|++++.+
T Consensus 29 ~dP~~---~a~~~~~~g~~~l~ivDLdaa~~g----~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvi 101 (229)
T PF00977_consen 29 GDPVE---VAKAFNEQGADELHIVDLDAAKEG----RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVI 101 (229)
T ss_dssp CCHHH---HHHHHHHTT-SEEEEEEHHHHCCT----HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEE
T ss_pred cCHHH---HHHHHHHcCCCEEEEEEccCcccC----chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEe
Confidence 34544 445556789999998642211112 234445666665 4578899999999999999999999999999
Q ss_pred Ccccc--HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEE-----eCCC---HHHHHHHHHHHhcCCCCCCeeeee
Q 020848 135 NLDTS--REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIG-----LGEA---EEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 135 ~let~--~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~G-----lget---~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
+-++. ++.. .+..+..-...+-+.+++--| .+.. .-+..+.++.+.+++ +..+-+
T Consensus 102 gt~~~~~~~~l------------~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g--~~~ii~- 166 (229)
T PF00977_consen 102 GTEALEDPELL------------EELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELG--AGEIIL- 166 (229)
T ss_dssp SHHHHHCCHHH------------HHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT---SEEEE-
T ss_pred ChHHhhchhHH------------HHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcC--CcEEEE-
Confidence 86554 1222 222222222122233333333 2322 245788888889887 555533
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
.-+...||.. .++.+ +++.+ +... +..+-.++|-.+. .+. ......|++.++.|.
T Consensus 167 tdi~~dGt~~----G~d~~-~~~~l---~~~~-~~~viasGGv~~~-~Dl-~~l~~~G~~gvivg~ 221 (229)
T PF00977_consen 167 TDIDRDGTMQ----GPDLE-LLKQL---AEAV-NIPVIASGGVRSL-EDL-RELKKAGIDGVIVGS 221 (229)
T ss_dssp EETTTTTTSS----S--HH-HHHHH---HHHH-SSEEEEESS--SH-HHH-HHHHHTTECEEEESH
T ss_pred eeccccCCcC----CCCHH-HHHHH---HHHc-CCCEEEecCCCCH-HHH-HHHHHCCCcEEEEeh
Confidence 2233446543 23332 23222 2222 2333344443222 232 334478888887775
No 305
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=86.80 E-value=11 Score=34.28 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchh-----HHHHHHHHHHhhhcCc-eE-EEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTN-----FNQILEYVKDIRDMGM-EV-CCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-----~~~l~~~i~~~k~~~~-~i-~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.++...+.|++.+.+..+...... |.. .+.+.++++.+++.|. .+ .-+.|. ....+..|++.|+|.++++
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~is-p~~f~e~~~P~~k~i~~~i~~~g~~~~~lH~cG~-~~~~~~~l~~~g~d~~~~~ 263 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLIS-PEMFEEFILPYLKKIIDAIKEAGKDPVILHICGN-TTPILDDLADLGADVLSVD 263 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS--HHHHHHHTHHHHHHHHHHHHHHETE-EEEEETTH-G-GGHHHHHTSS-SEEEE-
T ss_pred HHHHHHHHhCCCcccccccccCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEECCc-hHHHHHHHHhcCCCEEEEc
Confidence 3344555789988877653222222 322 3557777778887666 53 344564 3448999999999987774
No 306
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=86.77 E-value=7 Score=35.70 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHH
Q 020848 92 FNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELK 125 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~ 125 (320)
.+++.++++.+.+.|.. +.-|.|.++++.+.++.
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v 179 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRV 179 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHH
Confidence 35555555555544433 23345555555554443
No 307
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=86.69 E-value=5.8 Score=36.04 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC---------------CCCCchhHHHHHHHHHHhhh-c--CceEEEeCCCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD---------------TIGRKTNFNQILEYVKDIRD-M--GMEVCCTLGMLE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~---------------~~ge~~~~~~l~~~i~~~k~-~--~~~i~~~~g~l~ 117 (320)
.+.+++.+.++.+.+.|++.|.+.+.... ..| +...+.-++.++.+++ . ++++..+.|..+
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG-~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t 291 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSG-APLKERSTEVLRELYKLTGGKIPIIGVGGISS 291 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCC-hhhhHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 45568888888888899999887653110 011 2233445677777763 3 577888889999
Q ss_pred HHHHHHHHHhccCeeccC
Q 020848 118 KHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.++..+|.|.|.++
T Consensus 292 ~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 292 GEDAYEKIRAGASLVQLY 309 (327)
T ss_pred HHHHHHHHHcCCCHHhcc
Confidence 999888888999998886
No 308
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=86.59 E-value=25 Score=32.01 Aligned_cols=192 Identities=16% Similarity=0.149 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhh-hcCceEEEeCCCCCH----HHHHHHHHhccCeeccCccccHHHHhhhCCCCCH-HHHHHHHHHHHHc
Q 020848 92 FNQILEYVKDIR-DMGMEVCCTLGMLEK----HQAIELKKAGLTAYNHNLDTSREFYSKIITTRSY-DERLETLKHVREA 165 (320)
Q Consensus 92 ~~~l~~~i~~~k-~~~~~i~~~~g~l~~----e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~-~~~l~~i~~a~~~ 165 (320)
.+.+.+.++.++ +.+.++.++.+..+. +.++.+.++|+|.+.+.+-..+. ..... +.+. +.+.+.++.+++.
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~-g~~~~~~~~eil~~v~~~ 163 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPT-DPDIS-GAEVEQRYLDILRAVKSA 163 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCc-cccHHHHHHHHHHHHHhc
Confidence 456666666665 345565555433332 55667778899988886632111 01111 2223 3355666666653
Q ss_pred -CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC------CCCCC--C-CCCCHHHHHHHHHHHHHh
Q 020848 166 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG------TPLQD--Q-KPVEIWEMIRMIATARIV 235 (320)
Q Consensus 166 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g------t~~~~--~-~~~~~~e~~~~~a~~R~~ 235 (320)
.+++.+.+ .....++.++.+.+.+.| ++.|.+..-.+... .+... . .+......++.+...+..
T Consensus 164 ~~iPV~vKl----~p~~~~~~~~a~~l~~~G--~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~ 237 (334)
T PRK07565 164 VSIPVAVKL----SPYFSNLANMAKRLDAAG--ADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGR 237 (334)
T ss_pred cCCcEEEEe----CCCchhHHHHHHHHHHcC--CCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhh
Confidence 44443332 223346778888888888 66665543222110 00000 0 111112234444444333
Q ss_pred CCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC----CChhHHHHHHHHcCCCc
Q 020848 236 MPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN----NDFDADQLMFKVLGLTP 294 (320)
Q Consensus 236 ~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~----~~~~~~~~~i~~~G~~p 294 (320)
.. ..+-..+|-. ........+.+||+.+..+..++..+- .=.+++.+.+.+.|+.-
T Consensus 238 ~~-ipIig~GGI~--s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~~ 297 (334)
T PRK07565 238 VG-ADLAATTGVH--DAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYES 297 (334)
T ss_pred cC-CCEEEECCCC--CHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCCC
Confidence 32 1122222221 223345667899999877654443221 12455667777778743
No 309
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.50 E-value=11 Score=33.25 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-------CCchhHHHHHHHHHHhhhcCceE--EEeCCC---------CC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-------GRKTNFNQILEYVKDIRDMGMEV--CCTLGM---------LE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-------ge~~~~~~l~~~i~~~k~~~~~i--~~~~g~---------l~ 117 (320)
.+.+...+.++.+.++|+..+++-.|+.... -.+..-.++.++++..|+.|+.+ ..+... -.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~ 108 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL 108 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH
Confidence 7899999999999999999999976764210 01223467999999999877653 333211 12
Q ss_pred HHHHHHHHHhccCeeccCc-ccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 118 KHQAIELKKAGLTAYNHNL-DTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~l-et~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
++.++.+++.|+..|-++. ++- .+. ..-..+.++.|.+.++-|..|
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~~~d~Q~~---------v~~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFMDRDDQEM---------VNWYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE--SSTSHHH---------HHHHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHcCCCEEeeCcCCCCCHHH---------HHHHHHHHHHHHHcCcEEEec
Confidence 8889999999999988863 332 111 233356677788877665554
No 310
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=86.40 E-value=19 Score=30.48 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCCC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGMLE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l~----~e~l~~L~~a 127 (320)
.+.++|.+.++++.+.++..+|+. |.+.+...+.+ +..++.+.+- .|..+ ..+.++..++
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~---------p~~v~~a~~~l---~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~ 82 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVN---------PSYVPLAKELL---KGTEVRICTVVGFPLGASTTDVKLYETKEAIKY 82 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeC---------HHHHHHHHHHc---CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHc
Confidence 789999999999999999999873 44444444433 3335554332 23322 3345556667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.|.+.+-+.-. .+ ..++++.+.+-+....+. |+.+.+ |+-.+ -+.+++....+.+.+.| .+.|...
T Consensus 83 GAdEiDvv~n~g-----~l-~~g~~~~v~~ei~~i~~~~~g~~lKv--IlE~~~L~~~ei~~a~~ia~eaG--ADfvKTs 152 (211)
T TIGR00126 83 GADEVDMVINIG-----AL-KDGNEEVVYDDIRAVVEACAGVLLKV--IIETGLLTDEEIRKACEICIDAG--ADFVKTS 152 (211)
T ss_pred CCCEEEeecchH-----hh-hCCcHHHHHHHHHHHHHHcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEeC
Confidence 988887765321 11 245677777777776653 555554 44332 46688888889999998 6665542
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+.. ...+.++...+....+ ....+..++|--. .......+.+|++++
T Consensus 153 -------TGf~~-~gat~~dv~~m~~~v~---~~v~IKaaGGirt--~~~a~~~i~aGa~ri 201 (211)
T TIGR00126 153 -------TGFGA-GGATVEDVRLMRNTVG---DTIGVKASGGVRT--AEDAIAMIEAGASRI 201 (211)
T ss_pred -------CCCCC-CCCCHHHHHHHHHHhc---cCCeEEEeCCCCC--HHHHHHHHHHhhHHh
Confidence 12211 2345555333333222 2344555554322 223345667888876
No 311
>PRK15452 putative protease; Provisional
Probab=86.39 E-value=28 Score=33.12 Aligned_cols=123 Identities=10% Similarity=-0.004 Sum_probs=70.8
Q ss_pred HHHHHHcCCCEEEEecccCCCC--CCchhHHHHHHHHHHhhhcCceEEEe-CCCCCHHH-------HHHHHHhccCeecc
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTI--GRKTNFNQILEYVKDIRDMGMEVCCT-LGMLEKHQ-------AIELKKAGLTAYNH 134 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~--ge~~~~~~l~~~i~~~k~~~~~i~~~-~g~l~~e~-------l~~L~~aGld~v~i 134 (320)
++.+.+.|++.|++++.....- ..+...+++.+.++.+++.|.++.++ |....++. ++.|.++|+|.|.+
T Consensus 16 l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 16 MRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred HHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4455668999999975321110 11345588999999998888885443 44443333 57777889998877
Q ss_pred CccccHHHHhhhCCC----CCH---HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHH
Q 020848 135 NLDTSREFYSKIITT----RSY---DERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHT 190 (320)
Q Consensus 135 ~let~~~~~~~i~~~----~~~---~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~ 190 (320)
+-=+.-...+...+. .++ -.-..+++.+.+.|+. .+++...-|.+++.++.+.
T Consensus 96 ~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~---rvvLSrELsl~EI~~i~~~ 155 (443)
T PRK15452 96 SDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLT---RVILSRELSLEEIEEIRQQ 155 (443)
T ss_pred cCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc---EEEECCcCCHHHHHHHHhh
Confidence 522211111221110 011 1114677888888874 1344345588888877644
No 312
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=86.35 E-value=23 Score=31.46 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhh-cCceEEEeCCCC----CHHHHHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHc-
Q 020848 93 NQILEYVKDIRD-MGMEVCCTLGML----EKHQAIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREA- 165 (320)
Q Consensus 93 ~~l~~~i~~~k~-~~~~i~~~~g~l----~~e~l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~- 165 (320)
+.+++.++..++ .+.++.++.+-. -.+.++.+.++|+|.|.+.+-+. .... .-.-..+.+...+.++.+++.
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT 153 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc
Confidence 444554544442 344443443222 23446666777888887765432 1100 000124566666777777765
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeee-----------ecCCCCCCCCC-CCCHHHHHHHHHHHH
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALL-----------AVKGTPLQDQK-PVEIWEMIRMIATAR 233 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~-----------p~~gt~~~~~~-~~~~~e~~~~~a~~R 233 (320)
++++.+- ++-+.++..++++.+.+.| ++.+.+..-. |..+....... +......++.+...+
T Consensus 154 ~~Pv~vK----l~~~~~~~~~~a~~~~~~G--~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~ 227 (296)
T cd04740 154 DVPVIVK----LTPNVTDIVEIARAAEEAG--ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY 227 (296)
T ss_pred CCCEEEE----eCCCchhHHHHHHHHHHcC--CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH
Confidence 5554333 2334457888888888888 5655543211 11111001111 111111234444444
Q ss_pred HhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCC---CChhHHHHHHHHcCCCc
Q 020848 234 IVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN---NDFDADQLMFKVLGLTP 294 (320)
Q Consensus 234 ~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~---~~~~~~~~~i~~~G~~p 294 (320)
...+-..+ ..|-+. .+......+.+||+.+..+..++..+. .-.++..+.+.+.||.-
T Consensus 228 ~~~~ipii--~~GGI~-~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~ 288 (296)
T cd04740 228 KAVEIPII--GVGGIA-SGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKS 288 (296)
T ss_pred HhcCCCEE--EECCCC-CHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 33321122 222221 234446677899998887765544111 12444556677777753
No 313
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=86.05 E-value=16 Score=33.54 Aligned_cols=113 Identities=15% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCHHHHHHHH----HHHHHcCCCE-EEEec-ccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAA----QKAKEAGSTR-FCMGA-AWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~----~~~~~~g~~~-i~l~~-g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
++.+|+++.+ +.+++.|..- ..+.. .+.+..+ ....+.+.++++.+.+.|.. +.-|.|.+++..+.+|.+
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~-r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~ 233 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEG-PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLE 233 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccC-CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHH
Confidence 5677777644 4555667543 22321 1122222 35678899999988877754 456788888888777755
Q ss_pred hccCee---ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 127 AGLTAY---NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 127 aGld~v---~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.=.+.+ .++ ++...++..-+.+.-.+.++|...--..+-|+|+
T Consensus 234 ~l~~~~~~~~i~----------~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 234 AVMAVVPVDKLA----------VHFHDTYGQALANILVSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred HHHHhCCCCeEE----------EEECCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 411111 111 1334455566677777888898855555677765
No 314
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=86.02 E-value=6.6 Score=33.70 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.+.. .+. ++.+++..-+....|.+..+ ++++.+. ..++++.+..|..+.+.++.|.++|++.+.++
T Consensus 31 dp~~~a~~~---~~~-~~~l~ivDldga~~g~~~n~----~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRF---SEY-VDKIHVVDLDGAFEGKPKNL----DVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHH---HHh-CCEEEEEECcchhcCCcchH----HHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 555555544 344 78887754211111322333 3444443 35678889999999999999999999999887
Q ss_pred cccc
Q 020848 136 LDTS 139 (320)
Q Consensus 136 let~ 139 (320)
-.++
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 5443
No 315
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=85.92 E-value=8.6 Score=33.61 Aligned_cols=109 Identities=19% Similarity=0.273 Sum_probs=61.7
Q ss_pred CCHHHHH----HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVM----QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~----~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.++++ +.++.+++.|. .+.++. ...+ ....+++.++++.+.+.|.. +.-|.|.++++.+.+|...=
T Consensus 103 ~~~~~~~~~~~~~i~~a~~~G~-~v~~~~---~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 103 KDRAWVLDQLRRLVGRAKDRGL-FVSVGA---EDAS-RADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEee---ccCC-CCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHH
Confidence 4555554 45556666776 454432 1111 23567888888887766654 44567888888877665541
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.+. +.+++ +...++.--+.+.-.+.++|.+.-=..+.|+|+
T Consensus 178 ~~~~~~~l~~----------H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~ 220 (259)
T cd07939 178 RAATDLPLEF----------HAHNDLGLATANTLAAVRAGATHVSVTVNGLGE 220 (259)
T ss_pred HHhcCCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 111 22222 223344444555556667888754445777765
No 316
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=85.91 E-value=9 Score=33.87 Aligned_cols=125 Identities=19% Similarity=0.190 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCCEE-EEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCe-
Q 020848 57 TKDAVMQAAQKAKEAGSTRF-CMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA- 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i-~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~- 131 (320)
+.+.+.+.++.+++.|..-. .+.... +.....+.+.++++.+.+.|.. +.-|.|.++++.+..+.+.=...
T Consensus 116 ~~~~~~~~i~~ak~~G~~v~~~i~~~~----~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 116 DVRNLEVAIKAVKKAGKHVEGAICYTG----SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEecC----CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 45777777788888885322 222100 1123457777777777766644 34567888877776664441111
Q ss_pred -eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC--HHHHHHHHHHHhcCC
Q 020848 132 -YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA--EEDRVGLLHTLATLP 195 (320)
Q Consensus 132 -v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget--~ed~~~~l~~l~~l~ 195 (320)
+.+++ +...++.--+.+...+.++|.+.--..+.|+|+- .-.+++++..+...+
T Consensus 192 ~~~l~~----------H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 192 GLPIHL----------HTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTG 248 (275)
T ss_pred CCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccC
Confidence 22222 2233444445555566677887544456677542 224455555555554
No 317
>TIGR03586 PseI pseudaminic acid synthase.
Probab=85.83 E-value=27 Score=31.73 Aligned_cols=178 Identities=16% Similarity=0.148 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-----------------CCc---------hhHHHHHHHHHHhhhcCceEE
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----------------GRK---------TNFNQILEYVKDIRDMGMEVC 110 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----------------ge~---------~~~~~l~~~i~~~k~~~~~i~ 110 (320)
+.+...+.++.+.+.|++.|.||.-..... ++. +..++..++.+..++.|+.+.
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 678889999999999999888874211110 000 011223344444445677765
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLLH 189 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l~ 189 (320)
+++ ++.+.++.|.+.|++.+.++= +.-+. +.-++.+.+.|.++ ++.. .-+.+|+...++
T Consensus 95 stp--fd~~svd~l~~~~v~~~KI~S-----------~~~~n---~~LL~~va~~gkPv----ilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 95 SSP--FDETAVDFLESLDVPAYKIAS-----------FEITD---LPLIRYVAKTGKPI----IMSTGIATLEEIQEAVE 154 (327)
T ss_pred Ecc--CCHHHHHHHHHcCCCEEEECC-----------ccccC---HHHHHHHHhcCCcE----EEECCCCCHHHHHHHHH
Confidence 543 677788888888887776641 00011 34456666667664 3323 248999999999
Q ss_pred HHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 190 TLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 190 ~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
++.+-| ...+.+..- ..+ + |.+...--++.+..++..++ ..+-++. . ..+......++..||..+
T Consensus 155 ~i~~~g--~~~i~LlhC--~s~---Y--P~~~~~~nL~~i~~lk~~f~-~pVG~SD-H-t~G~~~~~aAva~GA~iI 219 (327)
T TIGR03586 155 ACREAG--CKDLVLLKC--TSS---Y--PAPLEDANLRTIPDLAERFN-VPVGLSD-H-TLGILAPVAAVALGACVI 219 (327)
T ss_pred HHHHCC--CCcEEEEec--CCC---C--CCCcccCCHHHHHHHHHHhC-CCEEeeC-C-CCchHHHHHHHHcCCCEE
Confidence 998877 333444321 111 1 11112223455666665553 1221221 0 111233456778899855
No 318
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=85.82 E-value=6.8 Score=34.75 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCC---------------CC--CchhHHHHHHHHHHhh-hc--CceEEEeCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGM 115 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~---------------~g--e~~~~~~l~~~i~~~k-~~--~~~i~~~~g~ 115 (320)
.+.+++.+.++.+.+.|++.+.+.++.... .| .+...+.-++.++.++ .. ++++..+.|.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI 252 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGI 252 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 567788999998889999988876432110 00 0111233466777776 34 6788888899
Q ss_pred CCHHHHHHHHHhccCeeccC
Q 020848 116 LEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 116 l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.+.++..+|.|.|.++
T Consensus 253 ~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 253 DSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred CCHHHHHHHHHcCccHheEc
Confidence 99899888889999988875
No 319
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=85.79 E-value=5 Score=33.98 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=6.2
Q ss_pred CCeeEEEEEeec
Q 020848 17 MEEVQQCTLLSI 28 (320)
Q Consensus 17 ~~~v~~~~~l~~ 28 (320)
+..+.+++.++.
T Consensus 51 ~~~v~v~tVigF 62 (211)
T TIGR00126 51 GTEVRICTVVGF 62 (211)
T ss_pred CCCCeEEEEeCC
Confidence 344555555553
No 320
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.60 E-value=9.2 Score=37.70 Aligned_cols=101 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ +++++ |+-....+. -.++|++
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~D----t~G-~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~la-AveaGa~ 219 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKD----MAG-ILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLK-AIEAGAD 219 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4788999999999999999999842 222 1233556777777763 3433 44443 443444444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVC 170 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~ 170 (320)
.|..++.+. .. ...-+.+.++..++ ..|++++
T Consensus 220 ~vd~ai~GlG~~-----tGn~~le~vv~~L~---~~g~~tg 252 (582)
T TIGR01108 220 GIDTAISSMSGG-----TSHPPTETMVAALR---GTGYDTG 252 (582)
T ss_pred EEEecccccccc-----ccChhHHHHHHHHH---hcCCCcc
Confidence 999888776 31 11235555555554 3455543
No 321
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=85.47 E-value=21 Score=30.16 Aligned_cols=194 Identities=15% Similarity=0.071 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCC--HHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLE--KHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~--~e~l~~L~~aGl 129 (320)
..++.++.++.++.+.+. +.-+-++ -|+...+=++.++.+|+. +-.+.......+ .=..+...++|.
T Consensus 11 D~~~l~~Ai~~a~~v~~~-~diiEvG--------TpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGA 81 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY-VDIIEVG--------TPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGA 81 (217)
T ss_pred cccCHHHHHHHHHHhhhc-ceEEEeC--------cHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCC
Confidence 347888988888877666 4334332 266666666888888854 222333333332 345677789999
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
|.+.+.- -.+.+...++++.+++.|..+-++++- .. +..+-.++++++| ++.+-++.=+-
T Consensus 82 d~~tV~g------------~A~~~TI~~~i~~A~~~~~~v~iDl~~--~~---~~~~~~~~l~~~g--vd~~~~H~g~D- 141 (217)
T COG0269 82 DWVTVLG------------AADDATIKKAIKVAKEYGKEVQIDLIG--VW---DPEQRAKWLKELG--VDQVILHRGRD- 141 (217)
T ss_pred CEEEEEe------------cCCHHHHHHHHHHHHHcCCeEEEEeec--CC---CHHHHHHHHHHhC--CCEEEEEeccc-
Confidence 9998842 345666788999999999887766553 22 4555666677787 66655543221
Q ss_pred CCCCCCCCCCCCH-HHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 210 KGTPLQDQKPVEI-WEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 210 ~gt~~~~~~~~~~-~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
.+. ...+. .+.+..+ +.... ...+.+++ ++.++.-......|+.-++.|. ..| +..++.+..+.+
T Consensus 142 ----~q~-~G~~~~~~~l~~i---k~~~~~g~~vAVaG---GI~~~~i~~~~~~~~~ivIvGr-aIt-~a~dp~~~a~~~ 208 (217)
T COG0269 142 ----AQA-AGKSWGEDDLEKI---KKLSDLGAKVAVAG---GITPEDIPLFKGIGADIVIVGR-AIT-GAKDPAEAARKF 208 (217)
T ss_pred ----Hhh-cCCCccHHHHHHH---HHhhccCceEEEec---CCCHHHHHHHhcCCCCEEEECc-hhc-CCCCHHHHHHHH
Confidence 111 11112 2222222 22222 23444444 3445544555667777777786 433 334566666665
Q ss_pred HH
Q 020848 288 KV 289 (320)
Q Consensus 288 ~~ 289 (320)
++
T Consensus 209 ~~ 210 (217)
T COG0269 209 KE 210 (217)
T ss_pred HH
Confidence 54
No 322
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.45 E-value=22 Score=31.16 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=9.9
Q ss_pred HHHHHHHHHhccCeecc
Q 020848 118 KHQAIELKKAGLTAYNH 134 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i 134 (320)
++.+++++++|+|.+-+
T Consensus 112 e~F~~~~~~~GvdGliv 128 (265)
T COG0159 112 EKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHHHHcCCCEEEe
Confidence 33466666666666554
No 323
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.35 E-value=30 Score=31.77 Aligned_cols=185 Identities=12% Similarity=0.207 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCC---CC-CchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT---IG-RKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~---~g-e~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
+.|++++.++.+++.|++-+ ..|...+- ++ .... ++=++++++++ +.|+.+.++ ..+.+.++.+.+. +|.
T Consensus 113 s~eq~l~~A~~lk~~g~~~~-r~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~te--v~d~~~v~~~~~~-~d~ 187 (352)
T PRK13396 113 NEEMIVETAKRVKAAGAKFL-RGGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITE--VMDAADLEKIAEV-ADV 187 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEE-EeeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEe--eCCHHHHHHHHhh-CCe
Confidence 67899999999888887543 33332221 11 0012 45566666666 678887554 4778888888887 888
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.++--.. .+ ...++.+.+.|..+. +=-|..-+.+|+...++++..-| ...+.+.. -|
T Consensus 188 lqIga~~~----------~n----~~LL~~va~t~kPVl--lk~G~~~t~ee~~~A~e~i~~~G--n~~viL~e----rG 245 (352)
T PRK13396 188 IQVGARNM----------QN----FSLLKKVGAQDKPVL--LKRGMAATIDEWLMAAEYILAAG--NPNVILCE----RG 245 (352)
T ss_pred EEECcccc----------cC----HHHHHHHHccCCeEE--EeCCCCCCHHHHHHHHHHHHHcC--CCeEEEEe----cC
Confidence 88763111 12 233556666665541 11233458999999999998877 33444422 13
Q ss_pred C-CCC-CCCCCCHHHHHHHHHHHHHhCCCcee-e--cCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 212 T-PLQ-DQKPVEIWEMIRMIATARIVMPKAMV-R--LSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 212 t-~~~-~~~~~~~~e~~~~~a~~R~~~p~~~i-~--~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
+ .+. ..+..+ -.++.+..++....-..+ - .+.|+..+.+.....++.+||+.++...
T Consensus 246 ~rtf~s~y~~~~--~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 246 IRTFDRQYTRNT--LDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred CccCcCCCCCCC--cCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEe
Confidence 2 111 111111 113444445544322111 1 1235544445666778889999887653
No 324
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=85.33 E-value=22 Score=30.21 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeC------CC--CCH----HHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTL------GM--LEK----HQAI 122 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~------g~--l~~----e~l~ 122 (320)
.+.+++++.++.+...|++-|-+= ..+-.......+.+.+..++ ..++++.+|. |. .++ +.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~D~vElR----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~ 82 (224)
T PF01487_consen 7 STLEELLAELEEAESSGADAVELR----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLE 82 (224)
T ss_dssp SSHHHHHHHHHHHHHTTTSEEEEE----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEE----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHH
Confidence 478899999998888788877662 11111234577888888887 4477765543 32 233 3344
Q ss_pred HHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-EEEeCCCHHHHHHHHHHHhcCCCCCCee
Q 020848 123 ELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG-IIGLGEAEEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 123 ~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-i~Glget~ed~~~~l~~l~~l~~~~~~v 201 (320)
.+.+.|++.|-+.++..++. ......++..+.++-... -+....+.+++.+.++.+.++| ++.+
T Consensus 83 ~~~~~~~d~iDiE~~~~~~~-------------~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~g--adiv 147 (224)
T PF01487_consen 83 RAIRLGPDYIDIELDLFPDD-------------LKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELG--ADIV 147 (224)
T ss_dssp HHHHHTSSEEEEEGGCCHHH-------------HHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT---SEE
T ss_pred HHHHcCCCEEEEEcccchhH-------------HHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcC--CCeE
Confidence 55566788887776644221 222445566666632222 2222346666888888888887 5555
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLS 244 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~ 244 (320)
.+-. .+.++ .+...+++.....+.......+-++
T Consensus 148 Kia~---~~~~~------~D~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 148 KIAV---MANSP------EDVLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp EEEE---E-SSH------HHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred EEEe---ccCCH------HHHHHHHHHHHHHhhccCCcEEEEE
Confidence 5432 22222 2345567777766665333444443
No 325
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=85.32 E-value=9.6 Score=36.44 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|+..|+|.. +.| -..-..+.++++.+| ..+++ ++.++ |.-....+. -.++|++
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~i~D----t~G-~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~la-AieaGad 223 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSICIKD----MAG-LLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLA-AVEAGAD 223 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccC-CcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHH-HHHhCCC
Confidence 4788999999999999999999842 222 123355666777776 33443 44443 443444444 4588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++..+
T Consensus 224 ~vD~sv~~~ 232 (467)
T PRK14041 224 MFDTAISPF 232 (467)
T ss_pred EEEeecccc
Confidence 998887654
No 326
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.30 E-value=25 Score=30.81 Aligned_cols=186 Identities=19% Similarity=0.241 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCc-------------hhHHHHHHHHHHhh-hc-CceE-EEe--CCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRK-------------TNFNQILEYVKDIR-DM-GMEV-CCT--LGM-- 115 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~-------------~~~~~l~~~i~~~k-~~-~~~i-~~~--~g~-- 115 (320)
+++.-++.++.+.+.|++-+-|+-...++. ..| ...+.++++++.++ +. .+++ ..+ |-.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 678888999998999998877763222222 112 23466788888888 32 4553 222 111
Q ss_pred -CCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 116 -LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 116 -l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
-.++.+++++++|+|.+-+. .-.+++..+..+.+.+.|+.. -.++- ..|.++..+.+....
T Consensus 102 ~G~e~F~~~~~~aGvdGlIip-------------DLP~ee~~~~~~~~~~~gl~~--I~lv~-p~t~~~Ri~~i~~~a-- 163 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLIIP-------------DLPPEESEELREAAKKHGLDL--IPLVA-PTTPEERIKKIAKQA-- 163 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEET-------------TSBGGGHHHHHHHHHHTT-EE--EEEEE-TTS-HHHHHHHHHH---
T ss_pred cchHHHHHHHHHcCCCEEEEc-------------CCChHHHHHHHHHHHHcCCeE--EEEEC-CCCCHHHHHHHHHhC--
Confidence 13567899999999988763 122333344456677888763 22332 335555444432221
Q ss_pred CCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 195 PTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 195 ~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. +|..++...|+.=.. . .-..++...+...|..... ++..| .++....+...+..||+.+++|..+
T Consensus 164 ---~---gFiY~vs~~GvTG~~-~-~~~~~l~~~i~~ik~~~~~---Pv~vG-FGI~~~e~~~~~~~~aDGvIVGSa~ 229 (259)
T PF00290_consen 164 ---S---GFIYLVSRMGVTGSR-T-ELPDELKEFIKRIKKHTDL---PVAVG-FGISTPEQAKKLAAGADGVIVGSAF 229 (259)
T ss_dssp ---S---SEEEEESSSSSSSTT-S-SCHHHHHHHHHHHHHTTSS----EEEE-SSS-SHHHHHHHHTTSSEEEESHHH
T ss_pred ---C---cEEEeeccCCCCCCc-c-cchHHHHHHHHHHHhhcCc---ceEEe-cCCCCHHHHHHHHccCCEEEECHHH
Confidence 1 233344444432111 1 2245666777777776622 22223 2333444556666999999999754
No 327
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=85.28 E-value=4.9 Score=35.00 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++.++...+.|++.++++.= |++ ..+-+.++++ ..++++....|..+ +.++.+.++|++++.++=
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-----g~~-n~~~i~~i~~---~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS 105 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-----GPN-NDDAAKEALH---AYPGGLQVGGGIND-TNAQEWLDEGASHVIVTS 105 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-----CCC-cHHHHHHHHH---hCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECc
Confidence 44566677799999999752 545 5544444443 45678888888876 999999999999999863
No 328
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=85.24 E-value=6 Score=36.24 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC------------CCC--CchhHHHHHHHHHHhh-hc--CceEEEeCCCCCH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD------------TIG--RKTNFNQILEYVKDIR-DM--GMEVCCTLGMLEK 118 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~------------~~g--e~~~~~~l~~~i~~~k-~~--~~~i~~~~g~l~~ 118 (320)
.+.+++.+.++.+.+.|++.+.+.+.... .+| .+..++.-++.++.++ .. ++++..+.|..+.
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~ 301 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSA 301 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCH
Confidence 45668888888888899999988764211 001 0223344566777776 33 5778888899999
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++..+|.|.|.++
T Consensus 302 eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 302 EDAYEKIRAGASLVQIY 318 (344)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 99888888999988775
No 329
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=85.23 E-value=11 Score=35.94 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+.+-+++.++.+.+.|++.|+|.. +.| -..-..+.++++.+|+ .+++ ++.+ .|.-....+. -.++|++
T Consensus 160 ~t~~y~~~~a~~l~~~Gad~I~IkD----taG-~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~la-AieAGad 233 (468)
T PRK12581 160 HTLNYYLSLVKELVEMGADSICIKD----MAG-ILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLA-AVEAGAD 233 (468)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHH-HHHcCCC
Confidence 4677788888888888999988842 222 1233556666666663 2344 3333 3433344444 4588999
Q ss_pred eeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeee
Q 020848 131 AYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 131 ~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
.|..++... +. ...-+.+.++..+ +..|++++++
T Consensus 234 ~vD~ai~g~g~g-----agN~~tE~lv~~L---~~~g~~tgiD 268 (468)
T PRK12581 234 RIDTALSPFSEG-----TSQPATESMYLAL---KEAGYDITLD 268 (468)
T ss_pred EEEeeccccCCC-----cCChhHHHHHHHH---HhcCCCCCcC
Confidence 888877654 22 1122445555444 3446655444
No 330
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=85.16 E-value=14 Score=28.07 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCc---eEEEeCCCCCHHHHHHHHHhccCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGM---EVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~---~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
.++|++.+.+. +.+.+-+++.+.. +...+.+.++++.+++.+. .+. -.|...++..++|+++|+|.+
T Consensus 37 vp~e~~~~~a~---~~~~d~V~iS~~~------~~~~~~~~~~~~~L~~~~~~~i~i~-~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 37 QTPEEIVEAAI---QEDVDVIGLSSLS------GGHMTLFPEVIELLRELGAGDILVV-GGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred CCHHHHHHHHH---HcCCCEEEEcccc------hhhHHHHHHHHHHHHhcCCCCCEEE-EECCCCHHHHHHHHHCCCCEE
Confidence 67888777665 4677777776431 2355667777777776543 332 334556788999999999876
Q ss_pred cc
Q 020848 133 NH 134 (320)
Q Consensus 133 ~i 134 (320)
..
T Consensus 107 ~~ 108 (122)
T cd02071 107 FG 108 (122)
T ss_pred EC
Confidence 43
No 331
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.15 E-value=5.9 Score=35.00 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 68 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+.|++.|.+- ....+.+.+.++.++. .++.+.++.|. +++.++++.+.|+|.|.++
T Consensus 198 A~~~GaDiI~LD---------n~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 198 AMNAGADIVMCD---------NMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSG 257 (273)
T ss_pred HHHcCCCEEEEC---------CCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeC
Confidence 345777766542 1345677777776553 23446666665 9999999999999999987
No 332
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=85.14 E-value=11 Score=37.37 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEe--CCCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCT--LGMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~--~g~l~~e~l~~L~~aGld 130 (320)
.+++.+++.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ ++++ .|.-....+ .-.++|++
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~D----t~G-~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~l-aAv~aGad 224 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKD----MAG-LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYL-KAVEAGVD 224 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----cCC-CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHH-HHHHhCCC
Confidence 5789999999999999999998842 222 1233556677777663 3433 4444 343334444 44588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.++
T Consensus 225 ~vD~ai~g~ 233 (592)
T PRK09282 225 IIDTAISPL 233 (592)
T ss_pred EEEeecccc
Confidence 988887664
No 333
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=85.12 E-value=6.6 Score=33.56 Aligned_cols=68 Identities=19% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEE--eCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCC--TLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~--~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+++.+.++.+.+.|++.|.+.. ..++.+++... .++++.. .....+...++.|.+.|++++.++.
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~------------~g~~~~~k~~~-~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~ 68 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN------------PGLLELLKELG-PDLKIIADYSLNVFNSESARFLKELGASRITLSP 68 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC------------HHHHHHHHHhC-CCCcEEEecCccCCCHHHHHHHHHcCCCEEEECc
Confidence 5778888888899999987742 12344444331 1445444 3455889999999999999999987
Q ss_pred ccc
Q 020848 137 DTS 139 (320)
Q Consensus 137 et~ 139 (320)
|-.
T Consensus 69 EL~ 71 (233)
T PF01136_consen 69 ELS 71 (233)
T ss_pred cCC
Confidence 654
No 334
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=85.07 E-value=11 Score=34.14 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhcCceEEEeCC-CCCHHHHHHHHHhccCeeccCc
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g-~l~~e~l~~L~~aGld~v~i~l 136 (320)
-+..++.++.+|+......+-.| ..+.+..+.|.++|+|.+.+++
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 36677778888854222222335 6899999999999999998774
No 335
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=17 Score=28.81 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceE-EEeC-----C--CCCHHHHHHHHHhcc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEV-CCTL-----G--MLEKHQAIELKKAGL 129 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i-~~~~-----g--~l~~e~l~~L~~aGl 129 (320)
.+.+.-.++.+.+.|++++++.+.. |. ....++++++. ++.+-+ .-+. | .+++|.-+.|++.|.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~t----G~--tA~k~lemveg--~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASST----GY--TALKALEMVEG--DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecc----cH--HHHHHHHhccc--CceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 3444444577888999999886532 31 22234443332 122221 1112 2 268899999999998
Q ss_pred CeeccC--cccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 130 TAYNHN--LDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 130 d~v~i~--let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
+.+.-+ +.+. +.+-++...-...+-.-++++ +-..|+++++.+.+
T Consensus 85 ~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~KVcvEIti 132 (186)
T COG1751 85 KVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGVKVCVEITI 132 (186)
T ss_pred eeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCcEEEEEEEE
Confidence 877654 6666 556666654445666667776 56678887766544
No 336
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.01 E-value=6.2 Score=36.28 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC--CchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG--RKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g--e~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+|.++.++.+.+.|+..+.++++...... .+.......+.++.....++++..+.+..+.+.++++.+.|+|.|.
T Consensus 232 ~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~ 311 (353)
T cd04735 232 IRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGADLVA 311 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHH
Confidence 56788888888888889988888765322110 0111122333333322225677777777788888888777888888
Q ss_pred cCcccc--HHHHhhhCC
Q 020848 134 HNLDTS--REFYSKIIT 148 (320)
Q Consensus 134 i~let~--~~~~~~i~~ 148 (320)
++=-.. |++..++..
T Consensus 312 ~gR~liadPdl~~k~~~ 328 (353)
T cd04735 312 IGRGLLVDPDWVEKIKE 328 (353)
T ss_pred HhHHHHhCccHHHHHHc
Confidence 763332 455454443
No 337
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=84.89 E-value=8.2 Score=35.76 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=51.7
Q ss_pred CcCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce----EEEeCCC-----CCHHHHH
Q 020848 52 GQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME----VCCTLGM-----LEKHQAI 122 (320)
Q Consensus 52 ~~~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~----i~~~~g~-----l~~e~l~ 122 (320)
.|+..+-|-+.+-++.+.+.|++-|-+... .+ ...++-..++.+|+.|.+ ++-+... ...+.++
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiFDA----lN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~ak 163 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIFDA----LN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAK 163 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEechh----cc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHH
Confidence 456566666777778888899988876543 22 235666777778777654 2323222 2467788
Q ss_pred HHHHhccCeeccC
Q 020848 123 ELKKAGLTAYNHN 135 (320)
Q Consensus 123 ~L~~aGld~v~i~ 135 (320)
+|.+.|+|+|.|.
T Consensus 164 el~~~g~DSIciK 176 (472)
T COG5016 164 ELLEMGVDSICIK 176 (472)
T ss_pred HHHHcCCCEEEee
Confidence 8899999999873
No 338
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=84.69 E-value=23 Score=29.79 Aligned_cols=160 Identities=10% Similarity=0.056 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.|+.++.++.+.+.|++.+-++-. .| .-.+.|+.+++..-++.+-.|. ++.++++...++|.+.+.-
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~------tp----~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLR------TP----AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCC------Cc----cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 58899999999999999998877531 12 3344555555322234455555 8999999999999976543
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
. .-+ -+.++.+++.|+.+-.+++ |+.|+.... ++| .+.+.+++ ...+
T Consensus 83 P-------------~~~----~~vi~~a~~~~i~~iPG~~-----TptEi~~A~----~~G--a~~vK~FP-----a~~~ 129 (201)
T PRK06015 83 P-------------GTT----QELLAAANDSDVPLLPGAA-----TPSEVMALR----EEG--YTVLKFFP-----AEQA 129 (201)
T ss_pred C-------------CCC----HHHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECC-----chhh
Confidence 1 112 2556788888887644433 566665544 455 55566543 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
. . ...+...+..+|+..+-.++ ++..+.-..-+.+|+.....|.
T Consensus 130 G---G------~~yikal~~plp~~~l~ptG---GV~~~n~~~~l~ag~~~~~ggs 173 (201)
T PRK06015 130 G---G------AAFLKALSSPLAGTFFCPTG---GISLKNARDYLSLPNVVCVGGS 173 (201)
T ss_pred C---C------HHHHHHHHhhCCCCcEEecC---CCCHHHHHHHHhCCCeEEEEch
Confidence 1 0 13344556677764333232 2333333556777766555565
No 339
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=84.57 E-value=48 Score=33.49 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=112.6
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
..+.++.+.+.|+..+.+.+-..-..| .+++ ++.++ ..++++....-.+++-++.+-+.+|.|.|.+-...+
T Consensus 72 ~~~~a~~y~~~GA~aiSVlTe~~~F~G---s~~~----l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L 144 (695)
T PRK13802 72 PAALAREYEQGGASAISVLTEGRRFLG---SLDD----FDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAAL 144 (695)
T ss_pred HHHHHHHHHHcCCcEEEEecCcCcCCC---CHHH----HHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhc
Confidence 344455567788988877653232333 2333 33334 346777776667999999999999999998865443
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCCCCC
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQDQKP 219 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~ 219 (320)
+-++..+.++.+++.|+.+ ++- -.+.+|+...+ +.+ ...|+++.-. +... .
T Consensus 145 -----------~~~~l~~l~~~a~~lGme~----LvE-vh~~~el~~a~----~~g--a~iiGINnRd------L~tf-~ 195 (695)
T PRK13802 145 -----------DDAQLKHLLDLAHELGMTV----LVE-THTREEIERAI----AAG--AKVIGINARN------LKDL-K 195 (695)
T ss_pred -----------CHHHHHHHHHHHHHcCCeE----EEE-eCCHHHHHHHH----hCC--CCEEEEeCCC------Cccc-e
Confidence 1224455677888889875 331 24667765544 345 5667776532 2211 1
Q ss_pred CCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHHcCCCcC
Q 020848 220 VEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKVLGLTPK 295 (320)
Q Consensus 220 ~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~~G~~p~ 295 (320)
.+.+. ....+.++|...+.++.+ ++. +..-.....+|++.+++|+.++++. ++.+.++-+..+|-...
T Consensus 196 vd~~~----t~~L~~~ip~~~~~VsES--GI~~~~d~~~l~~~G~davLIGeslm~~~--dp~~~~~~l~~~~~~~~ 264 (695)
T PRK13802 196 VDVNK----YNELAADLPDDVIKVAES--GVFGAVEVEDYARAGADAVLVGEGVATAD--DHELAVERLVKAGARVK 264 (695)
T ss_pred eCHHH----HHHHHhhCCCCcEEEEcC--CCCCHHHHHHHHHCCCCEEEECHHhhCCC--CHHHHHHHHHhcccccc
Confidence 23332 222334567655555421 222 2222445578999999998777654 46666666776774443
No 340
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=84.37 E-value=8.5 Score=33.61 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeecc--CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 92 FNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNH--NLDTSREFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 92 ~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i--~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
++.=+++|+.+++.++- +..-..++++.+.+.++|+|.+-. ++-+.-.+ ...+..+.++..+.++.+.++-..+
T Consensus 136 y~~EVemi~~A~~~gl~--T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~--Ga~~~~sl~~a~~~~~~i~~aa~~v 211 (268)
T PF09370_consen 136 YDREVEMIRKAHEKGLF--TTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSI--GAKTALSLEEAAERIQEIFDAARAV 211 (268)
T ss_dssp HHHHHHHHHHHHHTT-E--E--EE-SHHHHHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCe--eeeeecCHHHHHHHHHcCCCEEEecCCccCCCCc--CccccCCHHHHHHHHHHHHHHHHHh
Confidence 34445677777776652 333347999999999999998754 44332111 1112457777777777766654445
Q ss_pred eeeEEE-EeC---CCHHHHHHHHHHHh
Q 020848 170 CSGGII-GLG---EAEEDRVGLLHTLA 192 (320)
Q Consensus 170 ~~~~i~-Glg---et~ed~~~~l~~l~ 192 (320)
+.++++ .+| .+++|....++.-.
T Consensus 212 ~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 212 NPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp -TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 555444 233 57788777775543
No 341
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.37 E-value=27 Score=30.41 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCe
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~ 131 (320)
|.|.+++.++...+.|+ .++..|.+.+-. .| ...+.+..+.+..++.|+.+.++ ..+.+.++.+.+ .+|.
T Consensus 27 s~e~~~~~a~~~~~~g~-~~~r~g~~kpRt-s~~sf~G~G~~gl~~L~~~~~~~Gl~~~Te--v~d~~~v~~~~e-~vdi 101 (250)
T PRK13397 27 SYDHIRLAASSAKKLGY-NYFRGGAYKPRT-SAASFQGLGLQGIRYLHEVCQEFGLLSVSE--IMSERQLEEAYD-YLDV 101 (250)
T ss_pred CHHHHHHHHHHHHHcCC-CEEEecccCCCC-CCcccCCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHh-cCCE
Confidence 67899999999888998 455555443211 11 22344444444444779987664 477889999988 5998
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.|+--.. .+ ...++.+.+.|..|.+ =-|..-+.+|+...++++.+-| ...+.+.. .|
T Consensus 102 lqIgs~~~----------~n----~~LL~~va~tgkPVil--k~G~~~t~~e~~~A~e~i~~~G--n~~i~L~e----Rg 159 (250)
T PRK13397 102 IQVGARNM----------QN----FEFLKTLSHIDKPILF--KRGLMATIEEYLGALSYLQDTG--KSNIILCE----RG 159 (250)
T ss_pred EEECcccc----------cC----HHHHHHHHccCCeEEE--eCCCCCCHHHHHHHHHHHHHcC--CCeEEEEc----cc
Confidence 88863111 11 3445555555655311 1232358999999999999887 33343321 13
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCce-e--ecCCcccccChhHHHHHHHcCCceEeeCCcccc----CCC---CChh
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAM-V--RLSAGRVRFSMPEQALCFLAGANSIFTGEKLLT----TPN---NDFD 281 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~-i--~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~----~~~---~~~~ 281 (320)
+.-++.+ ....-.++.+...+..+.-.. + ..+.|...+.+.....++..||+.++....+-. +++ .+++
T Consensus 160 ~~~Y~~~-~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~sD~~q~l~~~ 238 (250)
T PRK13397 160 VRGYDVE-TRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALSDAAQQIDYK 238 (250)
T ss_pred cCCCCCc-cccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccCchhhhCCHH
Confidence 3111111 000111233344443222111 1 122343333345567788899998877532211 222 3577
Q ss_pred HHHHHHHHc
Q 020848 282 ADQLMFKVL 290 (320)
Q Consensus 282 ~~~~~i~~~ 290 (320)
+..++++++
T Consensus 239 ~l~~l~~~~ 247 (250)
T PRK13397 239 QLEQLGQEL 247 (250)
T ss_pred HHHHHHHHh
Confidence 777777664
No 342
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=84.18 E-value=11 Score=37.12 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++.+.+.++.+.+.|++.|+|-. +.| -..-..+.++++.+|+ .+++ +++++ |.-....+. -.++|++
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~D----t~G-~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~la-AieAGa~ 225 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKD----MAG-LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLK-AIEAGID 225 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----CCC-CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHH-HHHcCCC
Confidence 3567778888888888888888742 222 1233556666666662 3333 34433 333333333 3477888
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.+.
T Consensus 226 ~vD~ai~gl 234 (593)
T PRK14040 226 GVDTAISSM 234 (593)
T ss_pred EEEeccccc
Confidence 888777665
No 343
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.17 E-value=13 Score=33.68 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccccH-HHHhhhCC-C-CCHHHHHHHHHHHHHc
Q 020848 91 NFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSR-EFYSKIIT-T-RSYDERLETLKHVREA 165 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~-~~~~~i~~-~-~~~~~~l~~i~~a~~~ 165 (320)
.-+..+++++.+|+. +..+.. ....+.+..+.|.++|.|.+-+++=... =+-+.... + ..+..+.+.-+.+++.
T Consensus 134 hs~~~i~~ik~ik~~~P~~~vIa-GNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~ 212 (346)
T PRK05096 134 YSEHFVQFVAKAREAWPDKTICA-GNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL 212 (346)
T ss_pred cHHHHHHHHHHHHHhCCCCcEEE-ecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc
Confidence 346677788888853 333322 2347999999999999999877653220 00011111 1 1345566777777777
Q ss_pred CCeeeeeEEEEeCCCHHHHHHHH
Q 020848 166 GINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 166 Gi~v~~~~i~Glget~ed~~~~l 188 (320)
|.++-.+-=+ .+.-|+...+
T Consensus 213 gvpiIADGGi---~~sGDI~KAl 232 (346)
T PRK05096 213 GGQIVSDGGC---TVPGDVAKAF 232 (346)
T ss_pred CCCEEecCCc---ccccHHHHHH
Confidence 7764333211 2334555544
No 344
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=84.10 E-value=5.6 Score=34.09 Aligned_cols=71 Identities=20% Similarity=0.204 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHH-HHHhccCeeccC
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIE-LKKAGLTAYNHN 135 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~-L~~aGld~v~i~ 135 (320)
..+.++.+.+.|+..+.+.+-...-..+.. -++++++++ ..++++..+.|..+.+.++. +++.|++.+.++
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~----~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGY----DLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCC----CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 455666777889999988762211001111 255566665 34788889989999999988 999999998775
No 345
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=84.06 E-value=9 Score=34.10 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe
Q 020848 34 SEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT 112 (320)
Q Consensus 34 ~~~C~fC~~~~~~~~~~~~~~~~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~ 112 (320)
+.+|.|+.... ....++.||..+.++.+++. .-..+.|...+..... ...+++.++-.+..++.|..+..-
T Consensus 117 pk~cg~~~~~~-------~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~-~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 117 LKKNSLFGNDV-------AQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL-GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred CccccccCCCC-------cccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc-cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 56777765321 12236778888888777654 1223444332111111 112344444444444556663332
Q ss_pred C-CCCCHHHHHHHHHh
Q 020848 113 L-GMLEKHQAIELKKA 127 (320)
Q Consensus 113 ~-g~l~~e~l~~L~~a 127 (320)
. +..+.+.++++.+.
T Consensus 189 ~~~~~~~~ei~~~~~~ 204 (285)
T TIGR02320 189 HSRKKDPDEILEFARR 204 (285)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3 34666776666554
No 346
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=84.01 E-value=9.7 Score=34.51 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCC--CCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHH-hccCeecc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDT--IGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK-AGLTAYNH 134 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~--~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~-aGld~v~i 134 (320)
++..+.++.+.+.|+..+.+.+..... .| +.. ++.+++++ ..++++..+.|..+.+.++++.+ .|+|.|.+
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G-~a~----~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNG-EAE----YDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCC-CcC----hHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 356667777777898888886543211 12 122 35666666 35788888888889888888876 68999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 224 G 224 (321)
T PRK10415 224 G 224 (321)
T ss_pred C
Confidence 7
No 347
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=83.97 E-value=10 Score=32.43 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
|+.+++.+..+.+.+.|++-|.-.+|. .+.| ...+.+.-+.+.+. ..+.+-...|..+.+.+..+.++|.+++..|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~-~~~g--at~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF-STGG--ATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCC--CCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccC
Confidence 777888777777777888744443332 2223 23333333222222 2355666777888888888888888887764
No 348
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=83.76 E-value=31 Score=30.64 Aligned_cols=192 Identities=12% Similarity=0.052 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+...+ ...+.+..++..+. +..+++.++..- .+.+.+++..++|++.|.
T Consensus 26 ~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 26 ANMEMVMGAIKAAEELNSPIILQIAEVRLNH---SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhcc---CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 5678888888888888765554333222211 23445555555443 556676555332 578899999999999998
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE-EEEe--------CCCHHHHHHHHHHHhcCCCCCCeeee-
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG-IIGL--------GEAEEDRVGLLHTLATLPTHPESVPI- 203 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~-i~Gl--------get~ed~~~~l~~l~~l~~~~~~v~~- 203 (320)
+.-...+. ...++...+..+.+++.|+.+...+ -+|- |.+.-+..+..++.++.| ++.+.+
T Consensus 103 ~d~s~~~~-------~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg--~DyLAva 173 (281)
T PRK06806 103 FDGSHLPL-------EENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETD--VDALAVA 173 (281)
T ss_pred EcCCCCCH-------HHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhC--CCEEEEc
Confidence 86443310 1123334566677788888765443 2220 111123445555666666 677766
Q ss_pred -eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC
Q 020848 204 -NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 204 -~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
.+..+ |. ...+....+.+.++.+ ..+-+.+-+.+ .++..+.-...+.+|++.+-..
T Consensus 174 iG~~hg---~~-~~~~~l~~~~L~~i~~----~~~iPlV~hG~--SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 174 IGNAHG---MY-NGDPNLRFDRLQEIND----VVHIPLVLHGG--SGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred cCCCCC---CC-CCCCccCHHHHHHHHH----hcCCCEEEECC--CCCCHHHHHHHHHcCCcEEEEh
Confidence 44433 32 1224455554333322 22222222221 2444454466788999988544
No 349
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=83.71 E-value=5.2 Score=32.62 Aligned_cols=65 Identities=17% Similarity=0.290 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
+.||+.+ +.+.|++.|.|-. ...+++.++++.++.. .+.+.++.| ++.+.+.++.+.|+|.+.+
T Consensus 89 ~~ee~~e----a~~~g~d~I~lD~---------~~~~~~~~~v~~l~~~~~~v~ie~SGG-I~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 89 NLEEAEE----ALEAGADIIMLDN---------MSPEDLKEAVEELRELNPRVKIEASGG-ITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp SHHHHHH----HHHTT-SEEEEES----------CHHHHHHHHHHHHHHTTTSEEEEESS-SSTTTHHHHHHTT-SEEEE
T ss_pred CHHHHHH----HHHhCCCEEEecC---------cCHHHHHHHHHHHhhcCCcEEEEEECC-CCHHHHHHHHhcCCCEEEc
Confidence 4555544 4447888876632 1235666666666533 355556544 8899999999999999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 155 g 155 (169)
T PF01729_consen 155 G 155 (169)
T ss_dssp C
T ss_pred C
Confidence 6
No 350
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=83.66 E-value=19 Score=31.69 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-----chhHHHHHHHHHHhhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRD 104 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-----~~~~~~l~~~i~~~k~ 104 (320)
.+..++...+..+.+.|++.+++.+|+.+..++ +..+.+-.++++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~ 123 (274)
T cd00537 70 RNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRK 123 (274)
T ss_pred CCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 567899999999999999999998887665542 2344455566665553
No 351
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=83.63 E-value=35 Score=31.09 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-----------------CCc---------hhHHHHHHHHHHhhhcCceEE
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-----------------GRK---------TNFNQILEYVKDIRDMGMEVC 110 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-----------------ge~---------~~~~~l~~~i~~~k~~~~~i~ 110 (320)
+.+...+.++.+++.|++.|.||.-..... +++ +..+.+.++.+..++.|+.+.
T Consensus 14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~ 93 (329)
T TIGR03569 14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL 93 (329)
T ss_pred cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence 678888889999999999998885210000 100 011334444444455677765
Q ss_pred EeCCCCCHHHHHHHHHhccCeeccCc-cccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe-CCCHHHHHHHH
Q 020848 111 CTLGMLEKHQAIELKKAGLTAYNHNL-DTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL-GEAEEDRVGLL 188 (320)
Q Consensus 111 ~~~g~l~~e~l~~L~~aGld~v~i~l-et~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-get~ed~~~~l 188 (320)
+++ ++.+.++.|.+.|++.+-|+= +. .+ +.-++.+.+.|.++ ++.. .-+.+|+...+
T Consensus 94 stp--fd~~svd~l~~~~v~~~KIaS~~~-----------~n----~pLL~~~A~~gkPv----ilStGmatl~Ei~~Av 152 (329)
T TIGR03569 94 STP--FDLESADFLEDLGVPRFKIPSGEI-----------TN----APLLKKIARFGKPV----ILSTGMATLEEIEAAV 152 (329)
T ss_pred EEe--CCHHHHHHHHhcCCCEEEECcccc-----------cC----HHHHHHHHhcCCcE----EEECCCCCHHHHHHHH
Confidence 553 778888888888888777641 11 11 34566666777664 3333 24899999999
Q ss_pred HHHhcCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 189 HTLATLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 189 ~~l~~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
+++++-|.....+.+..-. .+ .|.+..+--++.+..++..++- .+-++. . ..+......++..||+.+
T Consensus 153 ~~i~~~G~~~~~i~llhC~--s~-----YP~~~~~~nL~~I~~Lk~~f~~-pVG~Sd-H-t~G~~~~~aAvalGA~iI 220 (329)
T TIGR03569 153 GVLRDAGTPDSNITLLHCT--TE-----YPAPFEDVNLNAMDTLKEAFDL-PVGYSD-H-TLGIEAPIAAVALGATVI 220 (329)
T ss_pred HHHHHcCCCcCcEEEEEEC--CC-----CCCCcccCCHHHHHHHHHHhCC-CEEECC-C-CccHHHHHHHHHcCCCEE
Confidence 9999877211023332211 11 1112222235556666655542 222221 1 111233456777899955
No 352
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.51 E-value=11 Score=33.45 Aligned_cols=94 Identities=18% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEE-ecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCC----------CCHH--
Q 020848 56 MTKDAVMQAAQKAKEA--GSTRFCM-GAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGM----------LEKH-- 119 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~--g~~~i~l-~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~----------l~~e-- 119 (320)
...+++++.+...... +. .+.+ .++ ...+++.+.++.+.+.|.. +.+|.+. .+.+
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~-pvi~si~g--------~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~ 150 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQ-PLIASVGG--------SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAV 150 (289)
T ss_pred cCHHHHHHHHHHHHhccCCC-eEEEEecc--------CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHH
Confidence 5788888888766553 22 2322 221 1235666777776655543 3333221 1233
Q ss_pred --HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 120 --QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 120 --~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
.++.++++ + .+.+.+ ++....+.++..+.++.+.+.|.+
T Consensus 151 ~eiv~~vr~~-~-~~pv~v--------Kl~~~~~~~~~~~~a~~l~~~Gad 191 (289)
T cd02810 151 ANLLKAVKAA-V-DIPLLV--------KLSPYFDLEDIVELAKAAERAGAD 191 (289)
T ss_pred HHHHHHHHHc-c-CCCEEE--------EeCCCCCHHHHHHHHHHHHHcCCC
Confidence 34444443 2 122332 233345677888999999999987
No 353
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=83.38 E-value=30 Score=30.26 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeecc-Cccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNH-NLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i-~let 138 (320)
+.+-++.+.+.|++.+.+- ++.+++..++++.+++.|+. +..-.-..+++.++.+.+..-+.|.+ +.-+
T Consensus 106 ~e~f~~~~~~aGvdGviip---------DLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~G 176 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIP---------DLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAG 176 (258)
T ss_pred HHHHHHHHHHcCCcEEEEC---------CCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCC
Q ss_pred c-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC-CHHHHHHHHHH
Q 020848 139 S-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-AEEDRVGLLHT 190 (320)
Q Consensus 139 ~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge-t~ed~~~~l~~ 190 (320)
. .. +........+.++.+++ ....-+++|.|- +.+++.+.+..
T Consensus 177 vTG~------~~~~~~~~~~~i~~vk~---~~~~pv~vGfGI~~~e~v~~~~~~ 221 (258)
T PRK13111 177 VTGA------RSADAADLAELVARLKA---HTDLPVAVGFGISTPEQAAAIAAV 221 (258)
T ss_pred CCCc------ccCCCccHHHHHHHHHh---cCCCcEEEEcccCCHHHHHHHHHh
No 354
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.29 E-value=7.1 Score=33.34 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+.++..+.++.+.+.|++.+-++- .-|...+.|.++.+..++..-.+.+-.|. ++.++++...++|.+.+--
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVs 97 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVT 97 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5889999999999999999887653 11334555555555554322235555565 8999999999999976543
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
. .-+ -+.++.+++.|+.+-.+++ |+.|+...+ ++| .+.+.+++ ...+
T Consensus 98 P-------------~~~----~~v~~~~~~~~i~~iPG~~-----TpsEi~~A~----~~G--a~~vKlFP-----A~~~ 144 (222)
T PRK07114 98 P-------------LFN----PDIAKVCNRRKVPYSPGCG-----SLSEIGYAE----ELG--CEIVKLFP-----GSVY 144 (222)
T ss_pred C-------------CCC----HHHHHHHHHcCCCEeCCCC-----CHHHHHHHH----HCC--CCEEEECc-----cccc
Confidence 1 112 2556778888877644433 566665544 455 55555543 1111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
. ...+...+..+|+..+-.++| ++...+.-..-+.+|+..+-.|.
T Consensus 145 G----------~~~ikal~~p~p~i~~~ptGG-V~~~~~n~~~yl~aGa~avg~Gs 189 (222)
T PRK07114 145 G----------PGFVKAIKGPMPWTKIMPTGG-VEPTEENLKKWFGAGVTCVGMGS 189 (222)
T ss_pred C----------HHHHHHHhccCCCCeEEeCCC-CCcchhcHHHHHhCCCEEEEECh
Confidence 1 133444455566643332332 22210222455678877775565
No 355
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=83.25 E-value=13 Score=32.64 Aligned_cols=106 Identities=21% Similarity=0.233 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc---cCe-
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTA- 131 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG---ld~- 131 (320)
+.+.+.++.+++.|. .+.++. +..+ ....+++.++++.+.+.|.. +.-|.|.++++.+..|.+.= ++.
T Consensus 114 ~~~~~~i~~a~~~G~-~v~~~~---~~~~-~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~ 188 (268)
T cd07940 114 ERAVEAVEYAKSHGL-DVEFSA---EDAT-RTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI 188 (268)
T ss_pred HHHHHHHHHHHHcCC-eEEEee---ecCC-CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 444555566677775 455542 1111 23567788888888877654 44578888888776664441 111
Q ss_pred -eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 132 -YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 132 -v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+.+++ +...++..-+.+.-.+.++|...-=..+.|+|+
T Consensus 189 ~i~l~~----------H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~ 227 (268)
T cd07940 189 KVPISV----------HCHNDLGLAVANSLAAVEAGARQVECTINGIGE 227 (268)
T ss_pred ceeEEE----------EecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence 23322 333455555566666667898854555777754
No 356
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=83.23 E-value=17 Score=30.67 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=67.4
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe-CCC-CCHHHHHHHHHhccCeeccC--ccccH
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT-LGM-LEKHQAIELKKAGLTAYNHN--LDTSR 140 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~-~g~-l~~e~l~~L~~aGld~v~i~--let~~ 140 (320)
++.+.+.|.+-+.+.+. ...+.+...++..++.|.++.+. .+. -.++..+.|+++|+|.+.+. .|.
T Consensus 73 ~~ma~~aGAd~~tV~g~--------A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~-- 142 (217)
T COG0269 73 ARMAFEAGADWVTVLGA--------ADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDA-- 142 (217)
T ss_pred HHHHHHcCCCEEEEEec--------CCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccH--
Confidence 55667789888877652 24577889999999888775433 233 34666778888999987653 322
Q ss_pred HHHhhhCCCCCH-HHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHH
Q 020848 141 EFYSKIITTRSY-DERLETLKHVREAGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 141 ~~~~~i~~~~~~-~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~ 186 (320)
+ ..+.+| .+.++.++.+.+.|+.+.+. =|-+++++..
T Consensus 143 q-----~~G~~~~~~~l~~ik~~~~~g~~vAVa----GGI~~~~i~~ 180 (217)
T COG0269 143 Q-----AAGKSWGEDDLEKIKKLSDLGAKVAVA----GGITPEDIPL 180 (217)
T ss_pred h-----hcCCCccHHHHHHHHHhhccCceEEEe----cCCCHHHHHH
Confidence 1 125566 67788899988888665322 2446555443
No 357
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=83.13 E-value=16 Score=31.86 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCeeccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~i~ 135 (320)
.++..+.++.+.+.|+..+.+.+-...-...... +++++.++ ..++++..+.|..+.+.+.++.+.| ++.+.++
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~----~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD----LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 3445566667778999998885432211111122 23444544 3478888999999999999999988 8887664
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
- .+|.. ..+++ +..+.+++.|+.+
T Consensus 230 ~----a~~~~---~~~~~---~~~~~~~~~gi~~ 253 (254)
T TIGR00735 230 S----VFHYR---EITIG---EVKEYLAERGIPV 253 (254)
T ss_pred H----HHhCC---CCCHH---HHHHHHHHCCCcc
Confidence 2 12211 23453 4445566677754
No 358
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.11 E-value=10 Score=32.31 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.++.+.+.|++.+.+..-...-...... +++++.++ ..++++..+.|..+.+.++.+++.|++.+.++
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~----~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPN----FELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCC----HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34445567899988875321110011112 34444444 34678888999999999999999999998875
No 359
>PTZ00124 adenosine deaminase; Provisional
Probab=83.03 E-value=16 Score=33.67 Aligned_cols=87 Identities=13% Similarity=0.174 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhhcCceEEEeCCCC----C-HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 020848 93 NQILEYVKDIRDMGMEVCCTLGML----E-KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGI 167 (320)
Q Consensus 93 ~~l~~~i~~~k~~~~~i~~~~g~l----~-~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 167 (320)
..+.+.++.+++.|+.+.++.|.. + .+..+.+...|.++|.+++... .+ -+.++.+++.++
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~~~----------~d----~~l~~~l~~~~I 271 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIRVA----------ES----QELIDMVKEKDI 271 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccccC----------CC----HHHHHHHHHcCC
Confidence 446666667776677766666642 1 2345566666777777776443 11 244667777777
Q ss_pred eee----eeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 168 NVC----SGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 168 ~v~----~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.+. +++..|.-.+.++ .-+..+.+.|
T Consensus 272 ~lEvCPtSN~~~~~v~~~~~--HPi~~l~~~G 301 (362)
T PTZ00124 272 LLEVCPISNVLLNNAKSMDT--HPIRKLYDAG 301 (362)
T ss_pred eEEECCcchhhhhcCCchhh--HHHHHHHHCC
Confidence 632 4445444333221 2255555666
No 360
>PLN02321 2-isopropylmalate synthase
Probab=82.84 E-value=25 Score=35.02 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHH----HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQK----AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~~----~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.||+++.+.. +++.|...+.++. ...+ ....+++.++++.+.+.|.. +.-|.|..+++.+.++.+.=
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~---EDa~-rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l 278 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSP---EDAG-RSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADI 278 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEec---ccCC-CCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHH
Confidence 577777766543 3445655555532 1122 24567788888887766644 45567877776665554431
Q ss_pred ---cC---eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 ---LT---AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ---ld---~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
++ .+.+++ +...++..-+.+.-.+.++|...-=..+.|+||
T Consensus 279 ~~~~~~~~~v~i~v----------H~HND~GlAvANslaAv~AGA~~Vd~TinGlGE 325 (632)
T PLN02321 279 KANTPGIENVIIST----------HCQNDLGLSTANTLAGAHAGARQVEVTINGIGE 325 (632)
T ss_pred HHhcCCCCCceEEE----------EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc
Confidence 11 122222 223455555555556677777644444667765
No 361
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=82.83 E-value=32 Score=30.18 Aligned_cols=186 Identities=15% Similarity=0.132 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCch-------------hHHHHHHHHHHhhh-cCce-EEEe--CCCC--
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKT-------------NFNQILEYVKDIRD-MGME-VCCT--LGML-- 116 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~-------------~~~~l~~~i~~~k~-~~~~-i~~~--~g~l-- 116 (320)
+.|.-++.++.+.+.|++-+-|+-...++. ..|. ..+.++++++++++ ..++ +..+ |-.+
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 568888888888889999888863211111 1121 23467888888873 3444 3222 1111
Q ss_pred -CHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCC
Q 020848 117 -EKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP 195 (320)
Q Consensus 117 -~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~ 195 (320)
.++.++.++++|+|.+.+.- -.+++.-+.++.+++.|+.. .+++...-+.+.+..+.+....
T Consensus 107 G~e~F~~~~~~aGvdgviipD-------------LP~ee~~~~~~~~~~~gi~~--I~lv~PtT~~eri~~i~~~a~g-- 169 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPD-------------LPYEESDYLISVCNLYNIEL--ILLIAPTSSKSRIQKIARAAPG-- 169 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecC-------------CCHHHHHHHHHHHHHcCCCE--EEEECCCCCHHHHHHHHHhCCC--
Confidence 36779999999999988742 23455667778888989764 2344233233444444433221
Q ss_pred CCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccC-hhHHHHHHHcCCceEeeCCcc
Q 020848 196 THPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 196 ~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~ 272 (320)
.|. ++..+|+.=.. ... ..++...++..|..... ++.-| .++. ++........||+.++.|..+
T Consensus 170 ----FIY---~vS~~GvTG~~-~~~-~~~~~~~i~~ir~~t~~---Pi~vG-FGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 170 ----CIY---LVSTTGVTGLK-TEL-DKKLKKLIETIKKMTNK---PIILG-FGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred ----cEE---EEcCCCCCCCC-ccc-cHHHHHHHHHHHHhcCC---CEEEE-CCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 223 33344443222 111 34455666666654322 22222 2233 333344556789999999755
No 362
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=82.70 E-value=8.2 Score=35.36 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-C-ceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-G-MEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~-~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
-.+.++.+.+.|++-++|-+. .| .-+.+.+.++.+|+. + +.+..-| ..+.+..+.|.++|+|.|.+++=.
T Consensus 109 ~~er~~~L~~agvD~ivID~a----~g---~s~~~~~~ik~ik~~~~~~~viaGN-V~T~e~a~~L~~aGad~vkVGiGp 180 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSA----HG---HSEHVIDMIKKIKKKFPDVPVIAGN-VVTYEGAKDLIDAGADAVKVGIGP 180 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-S----ST---TSHHHHHHHHHHHHHSTTSEEEEEE-E-SHHHHHHHHHTT-SEEEESSSS
T ss_pred HHHHHHHHHHcCCCEEEcccc----Cc---cHHHHHHHHHHHHHhCCCceEEecc-cCCHHHHHHHHHcCCCEEEEeccC
Confidence 355566677789988888532 12 336777888888843 3 5554433 589999999999999999888643
Q ss_pred c-H-HHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHH
Q 020848 139 S-R-EFYSKIITTR-SYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLH 189 (320)
Q Consensus 139 ~-~-~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~ 189 (320)
. - -+.....-+. .+.-+.+.-+.+++.++++..+-= -.+..|+...+.
T Consensus 181 GsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGG---i~~sGDi~KAla 231 (352)
T PF00478_consen 181 GSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGG---IRTSGDIVKALA 231 (352)
T ss_dssp STTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS----SSHHHHHHHHH
T ss_pred CcccccccccccCCcHHHHHHHHHHHhhhccCceeecCC---cCcccceeeeee
Confidence 2 1 1222211122 455667777777778766533321 135567666553
No 363
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=82.53 E-value=29 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----C--ceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----G--MEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.|.+-+..++.+|.+ ..+..++-++.+++. + +.+.+. |-++.+.+..++++|+|.+-.+
T Consensus 133 vD~VlvMtV~PGf~GQ~-fi~~~l~KI~~l~~~~~~~~~~~~IeVD-GGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 133 LDLVLVMSVNPGFGGQA-FIPSALDKLRAIRKKIDALGKPIRLEID-GGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred cCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEEC
Confidence 44555555445555543 445555555555432 3 334444 4477888888888888877665
No 364
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=82.44 E-value=2.2 Score=33.06 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=35.4
Q ss_pred eeeeeeeeecC-CCCCCCCCCCCHHHHHHHHHHH--------HHhCCCceeecCCcc--cccChhHHHHHHHcCCceE-e
Q 020848 200 SVPINALLAVK-GTPLQDQKPVEIWEMIRMIATA--------RIVMPKAMVRLSAGR--VRFSMPEQALCFLAGANSI-F 267 (320)
Q Consensus 200 ~v~~~~~~p~~-gt~~~~~~~~~~~e~~~~~a~~--------R~~~p~~~i~~~~g~--~~~~~~~~~~~~~~Gan~~-~ 267 (320)
.|.|..|+|+. +..+......+.++++..+... +...|..++++.++. +++.... +..||.+||++ +
T Consensus 2 ~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~-s~~FC~~CNRiRl 80 (128)
T PF06463_consen 2 DVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYELLPSEKRPNGPARYYRIPGGKGRVGFISPV-SNPFCSSCNRIRL 80 (128)
T ss_dssp EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS-EEEE--SST-SSEEEEETTT--EEEEE-TT-TS--GGG--EEEE
T ss_pred eEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCCccccccccCCcceEEEECCCCcEEEEEeCC-CCCCCCcCCEEEE
Confidence 47899999988 5556555667788877776543 112344566665433 5666665 45599999998 5
Q ss_pred eCCc
Q 020848 268 TGEK 271 (320)
Q Consensus 268 ~~~~ 271 (320)
+.++
T Consensus 81 TsdG 84 (128)
T PF06463_consen 81 TSDG 84 (128)
T ss_dssp -TTS
T ss_pred ccCc
Confidence 5444
No 365
>PLN02540 methylenetetrahydrofolate reductase
Probab=82.42 E-value=44 Score=32.78 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIRD 104 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k~ 104 (320)
++.++|...+..+.+.|++.|+...|+.+..++. ..+.+-.++|+.+++
T Consensus 70 ~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~ 123 (565)
T PLN02540 70 MPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRS 123 (565)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHH
Confidence 6788999999999999999998887776654431 234567777777774
No 366
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.39 E-value=8.5 Score=33.10 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.+...|+..+++.+-...-...+..++ .++.+. ..++++....|..+.+.+..++++|++.+.++
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~----~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGLLEGVNTE----PVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCCcCCCCHH----HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 33444456689999988653211011122333 334444 34688888888898999999999999998875
No 367
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.10 E-value=19 Score=31.53 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccC----ccccHHHHhhhC------------CCCCHH
Q 020848 91 NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHN----LDTSREFYSKII------------TTRSYD 153 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~----let~~~~~~~i~------------~~~~~~ 153 (320)
..++..++++.+.+.++.. ......-+.+.+++|++.- .+.+. +.+..+..+.+. +-....
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~--~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARAT--DTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhC--CCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 4567777777777666542 2211123456677776652 12221 222212211111 113567
Q ss_pred HHHHHHHHHHHcCCeeeeeEEE
Q 020848 154 ERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 154 ~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
..++....+.+.|+++.++.++
T Consensus 219 ~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHHHHHcCCcEEecCcc
Confidence 7778888888888887666444
No 368
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=81.89 E-value=8.6 Score=35.06 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC-CCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cCee
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI-GRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LTAY 132 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld~v 132 (320)
.++++.++.++.+.+.|+.-+.+.+|..... ..+....+..+.++.++ ..++++..+.+..+.+.++++.+.| +|.|
T Consensus 238 ~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V 317 (336)
T cd02932 238 WDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 3567777777777777777776654422110 00111122334555555 3466776666667777777777776 6777
Q ss_pred ccC
Q 020848 133 NHN 135 (320)
Q Consensus 133 ~i~ 135 (320)
.++
T Consensus 318 ~~g 320 (336)
T cd02932 318 ALG 320 (336)
T ss_pred hhh
Confidence 665
No 369
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=81.86 E-value=8.7 Score=33.26 Aligned_cols=123 Identities=16% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe---------CCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT---------LGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~---------~g~l~~e~l~~L~~ 126 (320)
+++..+...+..+- .-++-+.|++|+..... .+.+.+.++.+++.|+.++.- .+ .-++.++..++
T Consensus 22 lg~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~----~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~-~~~~yl~~~k~ 95 (244)
T PF02679_consen 22 LGLRYLEDLLESAG-DYIDFLKFGWGTSALYP----EEILKEKIDLAHSHGVYVYPGGTLFEVAYQQG-KFDEYLEECKE 95 (244)
T ss_dssp --HHHHHHHHHHHG-GG-SEEEE-TTGGGGST----CHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hhccEEEecCceeeecC----HHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcC-hHHHHHHHHHH
Confidence 56666655554332 33778888776433222 244777777888777765321 12 34788899999
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC-------CHHHHHHHHHHHhcCC
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE-------AEEDRVGLLHTLATLP 195 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge-------t~ed~~~~l~~l~~l~ 195 (320)
.|++.|-+|--+. .-+.+++.+.|+.+++.|+++.+- +|..+ +.+++.+.++.-.+.|
T Consensus 96 lGf~~IEiSdGti---------~l~~~~r~~~I~~~~~~Gf~v~~E--vG~K~~~~~~~~~~~~~i~~~~~dLeAG 160 (244)
T PF02679_consen 96 LGFDAIEISDGTI---------DLPEEERLRLIRKAKEEGFKVLSE--VGKKDPESDFSLDPEELIEQAKRDLEAG 160 (244)
T ss_dssp CT-SEEEE--SSS------------HHHHHHHHHHHCCTTSEEEEE--ES-SSHHHHTT--CCHHHHHHHHHHHHT
T ss_pred cCCCEEEecCCce---------eCCHHHHHHHHHHHHHCCCEEeec--ccCCCchhcccCCHHHHHHHHHHHHHCC
Confidence 9999998874332 235677788899999999876433 33322 2345555555555555
No 370
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=81.82 E-value=41 Score=30.60 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCEEEEecccCC-CCCCchh-----HHHHHHHHHHhhhcCc-eEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 61 VMQAAQKAKEAGSTRFCMGAAWRD-TIGRKTN-----FNQILEYVKDIRDMGM-EVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 61 i~~~~~~~~~~g~~~i~l~~g~~~-~~ge~~~-----~~~l~~~i~~~k~~~~-~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
+.+.++...+.|+..+.+...+-. ..-.|.. .+.+.++++.+++.+. .+.-..|.. ...+..+++.|+|.++
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~-~~~~~~l~~~g~d~ls 260 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFT-QPILRDIANNGCFGFS 260 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCc-hhhHHHHHHhCCCEEe
Confidence 334444556789887777532211 1111322 2445556666665443 333334533 4568889999999876
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
+.
T Consensus 261 ~d 262 (340)
T TIGR01463 261 VD 262 (340)
T ss_pred ec
Confidence 43
No 371
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=81.63 E-value=20 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc-----hhHHHHHHHHHHhh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK-----TNFNQILEYVKDIR 103 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~-----~~~~~l~~~i~~~k 103 (320)
.+.+++...+..+...|++.|++.+|+.+..|+. ..+.+..++++.++
T Consensus 82 ~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~ 134 (287)
T PF02219_consen 82 RNREALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFDYALDLIRLIR 134 (287)
T ss_dssp SBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-SSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhHHHHHHHHHHH
Confidence 5678888888888899999999888876655431 11233556666555
No 372
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=81.55 E-value=9.1 Score=32.97 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++.++.++.+.+.|++.+++.++.. +.+..+ +.++.++ .++++..+.|..+.+.+.++.+.|+|.|.++=
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~---g~~ad~----~~I~~i~-~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDP---GNHADL----KKIRDIS-TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCC---CCCCcH----HHHHHhc-CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 4556666666777877666543211 111122 3444444 46777788888888888888888888888863
No 373
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=81.50 E-value=7.5 Score=33.18 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLE 117 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~ 117 (320)
|++|||.+....+.+.|-+-+-+.+| +|..+--+.|.++.+.+.|++..+.+|..+
T Consensus 59 ~tLeeIi~~m~~a~~~Gk~VvRLhSG------DpsiYgA~~EQm~~L~~~gI~yevvPGVss 114 (254)
T COG2875 59 LTLEEIIDLMVDAVREGKDVVRLHSG------DPSIYGALAEQMRELEALGIPYEVVPGVSS 114 (254)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeecC------ChhHHHHHHHHHHHHHHcCCCeEEeCCchH
Confidence 89999999999999998777767664 477888999999999999999888899643
No 374
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=81.44 E-value=41 Score=30.37 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHHHHHHHh
Q 020848 118 KHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLA 192 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~ 192 (320)
.+.++.+.++|.|.|.+..-.. +..-+.-.. ..+.+...+.++.+++ .++++.+-+-.|..++..+..++++.+.
T Consensus 78 ~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~ 157 (319)
T TIGR00737 78 AEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAE 157 (319)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHH
Confidence 3445566778888887765332 211111111 1245556666666654 3566655554555444446677888888
Q ss_pred cCCCCCCeeeeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHH-HcCCceEeeCCc
Q 020848 193 TLPTHPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCF-LAGANSIFTGEK 271 (320)
Q Consensus 193 ~l~~~~~~v~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~-~~Gan~~~~~~~ 271 (320)
+.| ++.+.+..-.+. .....+. .+..+...+...+-..+ ..|-.. ........+ ..||+.++.|-.
T Consensus 158 ~~G--~d~i~vh~r~~~-----~~~~~~~---~~~~i~~i~~~~~ipvi--~nGgI~-~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 158 DAG--AQAVTLHGRTRA-----QGYSGEA---NWDIIARVKQAVRIPVI--GNGDIF-SPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HhC--CCEEEEEccccc-----ccCCCch---hHHHHHHHHHcCCCcEE--EeCCCC-CHHHHHHHHHhhCCCEEEEChh
Confidence 887 667766532221 1111111 13333334433332111 222221 122334455 478999988744
Q ss_pred c
Q 020848 272 L 272 (320)
Q Consensus 272 ~ 272 (320)
.
T Consensus 225 ~ 225 (319)
T TIGR00737 225 A 225 (319)
T ss_pred h
Confidence 3
No 375
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=81.29 E-value=45 Score=30.79 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCC----CCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTI----GRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~----ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
+.+.+++.++.+.+.|++-+ ..+...+-. ......+.+..+-+..++.|+.+.++ ..+.+.++.+.+. +|.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~-r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~--v~d~~~~~~l~~~-vd~l 205 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLL-RGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISE--IVNPADVEVALDY-VDVI 205 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEE-EccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEe--eCCHHHHHHHHHh-CCeE
Confidence 57889999999888887543 333222110 01123355555555555789887664 4778899999888 8888
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC--CCHHHHHHHHHHHhcCCCCCCeeeeeeeeecC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLG--EAEEDRVGLLHTLATLPTHPESVPINALLAVK 210 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg--et~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~ 210 (320)
.|+--.. .+ ...++.+.+.|.+| ++-.| -+.+|+...++.+..-| ...+.+.. .
T Consensus 206 kI~s~~~----------~n----~~LL~~~a~~gkPV----ilk~G~~~t~~e~~~Ave~i~~~G--n~~i~L~e----r 261 (360)
T PRK12595 206 QIGARNM----------QN----FELLKAAGRVNKPV----LLKRGLSATIEEFIYAAEYIMSQG--NGQIILCE----R 261 (360)
T ss_pred EECcccc----------cC----HHHHHHHHccCCcE----EEeCCCCCCHHHHHHHHHHHHHCC--CCCEEEEC----C
Confidence 8753111 11 24455555666554 33234 48999999999999887 33343321 1
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHhCCC-cee--ecCCcccccChhHHHHHHHcCCceEeeCCccccC----CC---CC
Q 020848 211 GTPLQDQK-PVEIWEMIRMIATARIVMPK-AMV--RLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTT----PN---ND 279 (320)
Q Consensus 211 gt~~~~~~-~~~~~e~~~~~a~~R~~~p~-~~i--~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~----~~---~~ 279 (320)
|+..++.+ ..+. -++.+..++..+.- ..+ -.+.|...+.+.....++..||+.++....+-.. ++ .+
T Consensus 262 g~s~yp~~~~~~l--dl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~ 339 (360)
T PRK12595 262 GIRTYEKATRNTL--DISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMD 339 (360)
T ss_pred ccCCCCCCCCCCc--CHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCC
Confidence 22221111 1111 24444455543321 111 1122222233334456788899988776434211 11 35
Q ss_pred hhHHHHHHHH
Q 020848 280 FDADQLMFKV 289 (320)
Q Consensus 280 ~~~~~~~i~~ 289 (320)
+++..+|+.+
T Consensus 340 p~el~~l~~~ 349 (360)
T PRK12595 340 IPEFDRFLDE 349 (360)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 376
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=81.19 E-value=15 Score=31.91 Aligned_cols=75 Identities=11% Similarity=-0.002 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+ .++...+.|.+.+++..-.... |.+...+ +++.+. ...+++.+..|..+.+.++.+.++|++++.++
T Consensus 32 ~p~~---~a~~~~~~g~~~lhivDLd~a~-g~~~n~~----~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvig 103 (243)
T TIGR01919 32 SLES---AAKWWEQGGAEWIHLVDLDAAF-GGGNNEM----MLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGG 103 (243)
T ss_pred CHHH---HHHHHHhCCCeEEEEEECCCCC-CCcchHH----HHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5544 4455566888888876432222 3344443 344433 34577888899999999999999999999887
Q ss_pred cccc
Q 020848 136 LDTS 139 (320)
Q Consensus 136 let~ 139 (320)
-.+.
T Consensus 104 T~a~ 107 (243)
T TIGR01919 104 TAAL 107 (243)
T ss_pred chhh
Confidence 6554
No 377
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=81.16 E-value=13 Score=31.92 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCccc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDT 138 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let 138 (320)
+.++.++.+.+.|++.+++..=+.. .|.+.. .++++.+. ..++++.+-.|..+.+.++.+.++|.+++.++-++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~~~~~n----~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~ 110 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-MGRGDN----DEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTET 110 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-cCCCcc----HHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEccee
Confidence 4455566667789999998643221 132333 34444444 34678888889999999999999999999887655
Q ss_pred c
Q 020848 139 S 139 (320)
Q Consensus 139 ~ 139 (320)
.
T Consensus 111 ~ 111 (233)
T cd04723 111 L 111 (233)
T ss_pred c
Confidence 4
No 378
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=81.12 E-value=7.3 Score=32.81 Aligned_cols=101 Identities=18% Similarity=0.115 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.++|+.+..++.+.+.|++.+-++- .- +.-.+.|+.+++.--++.+-.|. ++.++++++.++|.+.+--
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl------~s----p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL------RT----PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec------CC----CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEEC
Confidence 6899999999999999999886642 11 23445556665321266666676 8999999999999876432
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHH
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLL 188 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l 188 (320)
++-+ -+.++.+.+.|+.+..+++ |.-|+...+
T Consensus 92 -------------P~~~----~ev~~~a~~~~ip~~PG~~-----TptEi~~Al 123 (211)
T COG0800 92 -------------PGLN----PEVAKAANRYGIPYIPGVA-----TPTEIMAAL 123 (211)
T ss_pred -------------CCCC----HHHHHHHHhCCCcccCCCC-----CHHHHHHHH
Confidence 1222 2567888888887644443 455554443
No 379
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=80.83 E-value=42 Score=32.54 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=64.3
Q ss_pred CCHHHHHHHHH----HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~----~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++++.+. .+++.|...+.++. ...+ ....+.+.++++.+.+.|.. +.-|.|.++++.+.++.+.=
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~---EDa~-Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGC---EDGG-RSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEecc---cccc-ccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 56666666554 55567765454432 1112 24567788888888776644 45678998888777665431
Q ss_pred ---cC---eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 ---LT---AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ---ld---~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+. .+.+++ +...++.--..+.-.+.++|.+.--..+.|+||
T Consensus 278 ~~~~~~~~~i~I~~----------H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE 324 (503)
T PLN03228 278 KANTPGIDDIVFSV----------HCHNDLGLATANTIAGICAGARQVEVTINGIGE 324 (503)
T ss_pred HHHhccccCceeEe----------cccCCcChHHHHHHHHHHhCCCEEEEecccccc
Confidence 11 122322 333444444555556668898844446778875
No 380
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=80.82 E-value=18 Score=32.37 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhh---hcCceEEEeCCCCCHHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---DMGMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k---~~~~~i~~~~g~l~~e~l~~L~~a 127 (320)
.+.|+..+.++.+++. ....++|..=+ .... ...+-+.|++.+ +.|..+..-.|..+.++++++.+.
T Consensus 129 v~~ee~~~kI~Aa~~A~~~~d~~I~ART-Da~~----~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~ 199 (294)
T TIGR02319 129 ISTEEMTGKIEAAVEAREDEDFTIIART-DARE----SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDE 199 (294)
T ss_pred cCHHHHHHHHHHHHHhccCCCeEEEEEe-cccc----cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHh
Confidence 6788888888777663 22345553311 1111 112344444444 456664444567778888888775
No 381
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=80.72 E-value=11 Score=33.70 Aligned_cols=65 Identities=14% Similarity=0.174 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++||+.+. .+.|++.+.+. +...+++-+.++.+++ ..+.+.++.| ++.+.+.++.+.|+|.|.+
T Consensus 205 tleea~eA----~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGG-It~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 205 TLEQVQEA----LEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGN-ITLETIRAVAETGVDYISS 270 (288)
T ss_pred CHHHHHHH----HHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 45555443 45788777663 2234566666666653 2455555544 7899999999999999988
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 271 g 271 (288)
T PRK07428 271 S 271 (288)
T ss_pred c
Confidence 6
No 382
>PRK06801 hypothetical protein; Provisional
Probab=80.71 E-value=41 Score=29.95 Aligned_cols=194 Identities=13% Similarity=0.081 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+...+ ..++.+..+++.+. +..+++.++..- .+.+.+++-.++|+++|.
T Consensus 26 ~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~---~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFIINIAEVHFKY---ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEeCcchhhc---CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEE
Confidence 5778888888888888865554333222211 24566777777765 557776655432 467888888899999988
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eeeEEEEeCCC----------HHHHHHHHHHHhcCCCCCCee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA----------EEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v--~~~~i~Glget----------~ed~~~~l~~l~~l~~~~~~v 201 (320)
+.-...+ . ..+.+...+..+.++..|+.+ .++.+-|..+. .-+..+..+++++.| ++.+
T Consensus 103 ~D~S~l~-~------eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tg--vD~L 173 (286)
T PRK06801 103 FDGSTLE-Y------EENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTG--IDAL 173 (286)
T ss_pred EcCCCCC-H------HHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHC--cCEE
Confidence 8533221 0 112334456677788888765 34443222111 113356667777787 7777
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
.+ .+-+..|.. ...+.++.+.+.++.. ..+-+..-.. | .++..+.-..+...|++.+-.+
T Consensus 174 Av-aiGt~Hg~y-~~~~~l~~e~l~~i~~----~~~~PLVlHG-G-Sgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 174 AV-AIGNAHGKY-KGEPKLDFARLAAIHQ----QTGLPLVLHG-G-SGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred Ee-ccCCCCCCC-CCCCCCCHHHHHHHHH----hcCCCEEEEC-C-CCCCHHHHHHHHHcCCcEEEeh
Confidence 77 443333332 2223455554333322 2232222222 1 2344444467788999988433
No 383
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=80.70 E-value=32 Score=28.67 Aligned_cols=180 Identities=11% Similarity=0.110 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh----hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k----~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
+++.+.++.+.+.|++-+.+--.+ .. ...+.+.++.++ ..++.+.++ +.++...++|+|.+.+
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~---~~----~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~ 87 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKG---LD----TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHL 87 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCC---CC----HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEec
Confidence 345666777777899888773211 11 223333333333 346665443 5678888999999877
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
..+.. . ...++..++.+..+++ . -.|.++..+.. +.+ ++.+.+.++.|....+-
T Consensus 88 ~~~~~-----------~----~~~~~~~~~~~~~~g~--~---~~t~~e~~~a~----~~g--aD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 88 GQDDL-----------P----VADARALLGPDAIIGL--S---THTLEEAAAAL----AAG--ADYVGVGPIFPTPTKKD 141 (212)
T ss_pred CcccC-----------C----HHHHHHHcCCCCEEEE--e---CCCHHHHHHHh----HcC--CCEEEECCccCCCCCCC
Confidence 54321 0 1222333344433321 1 23655543333 455 78888877766432221
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHH
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMF 287 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i 287 (320)
. .+....+. +...+..+++..+-..+ ++.++.-...+.+|++.+..|..+... .++.+.++.+
T Consensus 142 ~-~~~~g~~~----~~~~~~~~~~~~v~a~G---GI~~~~i~~~~~~Ga~gv~~gs~i~~~--~d~~~~~~~l 204 (212)
T PRK00043 142 A-KAPQGLEG----LREIRAAVGDIPIVAIG---GITPENAPEVLEAGADGVAVVSAITGA--EDPEAAARAL 204 (212)
T ss_pred C-CCCCCHHH----HHHHHHhcCCCCEEEEC---CcCHHHHHHHHHcCCCEEEEeHHhhcC--CCHHHHHHHH
Confidence 1 11112222 22223333432233232 333444456778999999887644432 3444444433
No 384
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.50 E-value=33 Score=28.71 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEe----CCCC-C---HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCT----LGML-E---KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~----~g~l-~---~e~l~~L~~a 127 (320)
.+.+++.+.++.+.+.++..+++. |.+.+...+. ++..++.+.+. .|.. + ...+++..+.
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~---------p~~v~~~~~~---l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~ 81 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVN---------PCFVPLAREA---LKGSGVKVCTVIGFPLGATTTEVKVAEAREAIAD 81 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEc---------HHHHHHHHHH---cCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence 689999999999999899999774 3233333332 23334443322 2322 1 2235566667
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEeC-CCHHHHHHHHHHHhcCCCCCCeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGLG-EAEEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Glg-et~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
|.|.+.+.+.-. .+ ..++++..++-+..+.+. |+.+.+ ++..+ .+++++....+.+.++| .+.|...
T Consensus 82 GAdevdvv~~~g-----~~-~~~~~~~~~~ei~~v~~~~~g~~lkv--I~e~~~l~~~~i~~a~ria~e~G--aD~IKTs 151 (203)
T cd00959 82 GADEIDMVINIG-----AL-KSGDYEAVYEEIAAVVEACGGAPLKV--ILETGLLTDEEIIKACEIAIEAG--ADFIKTS 151 (203)
T ss_pred CCCEEEEeecHH-----HH-hCCCHHHHHHHHHHHHHhcCCCeEEE--EEecCCCCHHHHHHHHHHHHHhC--CCEEEcC
Confidence 999887765331 11 134556566666665553 555544 55553 46788888999999998 6665553
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+.. ...+.+....+....+ ....+.+++|--. .+.....+.+||+++
T Consensus 152 -------TG~~~-~~at~~~v~~~~~~~~---~~v~ik~aGGikt--~~~~l~~~~~g~~ri 200 (203)
T cd00959 152 -------TGFGP-GGATVEDVKLMKEAVG---GRVGVKAAGGIRT--LEDALAMIEAGATRI 200 (203)
T ss_pred -------CCCCC-CCCCHHHHHHHHHHhC---CCceEEEeCCCCC--HHHHHHHHHhChhhc
Confidence 11211 2345554333333333 3345555554322 223345566787765
No 385
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=80.50 E-value=26 Score=31.59 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHH-HhccCeeccC
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK-KAGLTAYNHN 135 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~-~aGld~v~i~ 135 (320)
++.+.++.+.+.|+..+.+.+.... .+-+ -+..++.++.+++ .++++..+.|..+.+.+.++. ..|+|.|.++
T Consensus 148 ~~~~~a~~l~~~G~d~i~vh~r~~~-~~~~--~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 148 NAVEAARIAEDAGAQAVTLHGRTRA-QGYS--GEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hHHHHHHHHHHhCCCEEEEEccccc-ccCC--CchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 4566667777789988887643211 1110 0123566777773 578888888888888888887 6789999887
No 386
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=80.48 E-value=8.8 Score=35.58 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCC-CCCHHHHHHHHHhccCeeccCcccc-H
Q 020848 63 QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLG-MLEKHQAIELKKAGLTAYNHNLDTS-R 140 (320)
Q Consensus 63 ~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g-~l~~e~l~~L~~aGld~v~i~let~-~ 140 (320)
..++.+.+.|++-|+|-++ .| .-.+-+++++.+|+.-.+..+-.| .++.++.+.|.++|+|.+.++.-+. -
T Consensus 254 ~rl~ll~~aGvdvviLDSS----qG---nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSi 326 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSS----QG---NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSI 326 (503)
T ss_pred HHHHHhhhcCCcEEEEecC----CC---cchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCce
Confidence 3455667789999988442 13 224678888999865433333333 3899999999999999998876443 1
Q ss_pred -HHHhhhCCCC-CHHHHHHHHHHHHHcCCeeeee
Q 020848 141 -EFYSKIITTR-SYDERLETLKHVREAGINVCSG 172 (320)
Q Consensus 141 -~~~~~i~~~~-~~~~~l~~i~~a~~~Gi~v~~~ 172 (320)
-+.+.+.-+. .-..+.+..+.|+..|+++-.+
T Consensus 327 CiTqevma~GrpQ~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 327 CITQKVMACGRPQGTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred eeeceeeeccCCcccchhhHHHHHHhcCCceeec
Confidence 1122222122 3345678888999999886444
No 387
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.44 E-value=35 Score=28.94 Aligned_cols=161 Identities=19% Similarity=0.157 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cC--ceEEEeCCC-CCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MG--MEVCCTLGM-LEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~--~~i~~~~g~-l~~e~l~~L~~aGld~ 131 (320)
.+.|+.+..++.+.+.|++-+-++-- -| .-++.++.+++ .+ ..+.+-.|. ++.++++...++|.+.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~------~~----~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT------NP----FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC------Cc----cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 57899999999999999998876531 12 33445555552 22 235555565 8999999999999986
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+-- +.-+ -+.++.+++.|+.+ +.|. .|+.|+.... +.| .+.+.+++ .
T Consensus 92 ivs-------------P~~~----~~v~~~~~~~~i~~----iPG~-~T~~E~~~A~----~~G--ad~vklFP-----a 138 (213)
T PRK06552 92 IVS-------------PSFN----RETAKICNLYQIPY----LPGC-MTVTEIVTAL----EAG--SEIVKLFP-----G 138 (213)
T ss_pred EEC-------------CCCC----HHHHHHHHHcCCCE----ECCc-CCHHHHHHHH----HcC--CCEEEECC-----c
Confidence 542 1112 24567788888765 3333 3677776654 466 67777632 1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
. ...++ .+...+..+|+..+-..+ ++..+.-...+.+|++.+..|..+
T Consensus 139 ~------~~G~~----~ik~l~~~~p~ip~~atG---GI~~~N~~~~l~aGa~~vavgs~l 186 (213)
T PRK06552 139 S------TLGPS----FIKAIKGPLPQVNVMVTG---GVNLDNVKDWFAAGADAVGIGGEL 186 (213)
T ss_pred c------cCCHH----HHHHHhhhCCCCEEEEEC---CCCHHHHHHHHHCCCcEEEEchHH
Confidence 1 12222 233345556653332222 333444466788999998777534
No 388
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=80.14 E-value=14 Score=31.70 Aligned_cols=71 Identities=14% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-c-CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-M-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.++.++.+.+.|+..+.+-.. ..|.+. --++.|+.+++ . ++++..+.|..+.+.+.++.++|.|.|.++
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~---~~g~~~---a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAM---YPGKPY---ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeC---CCCCch---hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 45666777777788888877421 112221 12455666663 3 377878888888888877777888888775
No 389
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=80.11 E-value=48 Score=30.80 Aligned_cols=109 Identities=24% Similarity=0.380 Sum_probs=64.1
Q ss_pred CCHHHHHH----HHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQ----AAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~----~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++++ .++.+++.|. .+.++. ...+ ....+++.++++.+.+.|.. +.-|.|.++++.+.++.+.=
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~-~v~~~~---ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGL-YVSFSA---EDAS-RTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEEe---ccCC-CCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHH
Confidence 45566665 4455566776 455432 1111 24567888888888876644 45678888888877665541
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
... +.+++ +...++.--+.+.-.+.++|...--..+.|+|+
T Consensus 184 ~~~~~~~l~~----------H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe 226 (378)
T PRK11858 184 VEAVDIPIEV----------HCHNDFGMATANALAGIEAGAKQVHTTVNGLGE 226 (378)
T ss_pred HHhcCCeEEE----------EecCCcCHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 112 22222 333455555555666677898755556778875
No 390
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=80.10 E-value=31 Score=28.15 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHH-hhhcCceEEEeCCCC--------CHHHHHHHHHh
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKD-IRDMGMEVCCTLGML--------EKHQAIELKKA 127 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~-~k~~~~~i~~~~g~l--------~~e~l~~L~~a 127 (320)
+.+.+.+.++.+.+.|++.+.+.+ .+++.+.. .....+++.+..|.. ..+.++..+++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 788999999999999998887653 23333222 222135544333321 35667777888
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc---CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA---GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVP 202 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~---Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~ 202 (320)
|.|.+.+..-. |... ..+.+...+.++.+.+. ++.+.+..+.+...+.+.+.+..+.+.+.+ ++.+.
T Consensus 78 Gad~i~v~~~~----~~~~--~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g--~~~iK 147 (201)
T cd00945 78 GADEIDVVINI----GSLK--EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG--ADFIK 147 (201)
T ss_pred CCCEEEEeccH----HHHh--CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC--CCEEE
Confidence 99988775322 1111 11355566666665554 677655554433235677777777676666 55444
No 391
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=79.91 E-value=30 Score=30.24 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc----------------------cCCCCCCc-hhHHHHHHHHHHhhhc-CceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAA----------------------WRDTIGRK-TNFNQILEYVKDIRDM-GMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g----------------------~~~~~ge~-~~~~~l~~~i~~~k~~-~~~i~~ 111 (320)
++.|+..+.+..+++.|+..+.+... ..+..|.. ...+.+.+.++.+|+. +.++.+
T Consensus 124 lp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v 203 (256)
T TIGR00262 124 LPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLV 203 (256)
T ss_pred CChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE
Confidence 56677666666666666655444311 01222322 2345677777777743 556777
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+.+.++.+.++|.|.+-++
T Consensus 204 gfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 204 GFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEC
Confidence 777777888888888888887776
No 392
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=79.86 E-value=14 Score=33.85 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEecccCCCC-C----C-chh--HHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDTI-G----R-KTN--FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELK 125 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~-g----e-~~~--~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~ 125 (320)
+++++.++.++.+.+.| ++-+.+.+|..... + . +.. .....+.++.+|+ .++++..+.+..+.+.++++.
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l 304 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQAL 304 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHH
Confidence 46788888888888888 78888865532211 0 0 000 1123556666663 477777777777888888887
Q ss_pred Hhc-cCeeccCcccc--HHHHhhh
Q 020848 126 KAG-LTAYNHNLDTS--REFYSKI 146 (320)
Q Consensus 126 ~aG-ld~v~i~let~--~~~~~~i 146 (320)
+.| +|.|.++=-.. |++.+++
T Consensus 305 ~~~~~D~V~~gR~~ladP~l~~k~ 328 (343)
T cd04734 305 AAGHADMVGMTRAHIADPHLVAKA 328 (343)
T ss_pred HcCCCCeeeecHHhHhCccHHHHH
Confidence 765 88888874333 3444443
No 393
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=79.81 E-value=17 Score=31.93 Aligned_cols=109 Identities=16% Similarity=0.277 Sum_probs=63.3
Q ss_pred CCHHHHHHHH----HHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAA----QKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~----~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.++.++.+ +.+++.|. .+.++.. ...+ ...+.+.++++.+.+.|.. +.-|.|.++++.+..+.+.=
T Consensus 105 ~~~~e~~~~~~~~i~~a~~~G~-~v~~~~e--da~r--~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 105 KSITEIIESAVEVIEFVKSKGI-EVRFSSE--DSFR--SDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-eEEEEEE--eeCC--CCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHH
Confidence 5666655555 56666776 4444321 1112 2356788888888876654 34578888888877665441
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
... +.+++ +...++.--+.+.-.+.++|...--..+.|+|+
T Consensus 180 ~~~~~~~i~~----------H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe 222 (262)
T cd07948 180 RGVVSCDIEF----------HGHNDTGCAIANAYAALEAGATHIDTTVLGIGE 222 (262)
T ss_pred HHhcCCeEEE----------EECCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 111 22322 223344444566666678898865556778865
No 394
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=79.68 E-value=49 Score=30.17 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=49.3
Q ss_pred HHHHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeeeEEEEe-C-CCHHHHHHHHHH
Q 020848 118 KHQAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGL-G-EAEEDRVGLLHT 190 (320)
Q Consensus 118 ~e~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Gl-g-et~ed~~~~l~~ 190 (320)
.+.++.+.++|+|.|.+..-.. +...+.-.+ -.+.+...+.++.+++ .++.+.+-+=+|. + ++.++..+++..
T Consensus 80 ~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~ 159 (333)
T PRK11815 80 AEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDT 159 (333)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHH
Confidence 3445566677888777766333 222221111 1345555666666655 3566666555565 2 456677888888
Q ss_pred HhcCCCCCCeeeee
Q 020848 191 LATLPTHPESVPIN 204 (320)
Q Consensus 191 l~~l~~~~~~v~~~ 204 (320)
+.+.| ++.+.+.
T Consensus 160 l~~aG--~d~i~vh 171 (333)
T PRK11815 160 VAEAG--CDTFIVH 171 (333)
T ss_pred HHHhC--CCEEEEc
Confidence 88887 6666554
No 395
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.30 E-value=17 Score=33.17 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCC-----C-chh--HHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIG-----R-KTN--FNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~g-----e-~~~--~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~ 126 (320)
+++++.++.++.+.+.|++-+.+.+|...... . +.. -....+..+.+| ..++++.++.+..+.+.++++.+
T Consensus 233 ~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~ 312 (338)
T cd04733 233 FTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALA 312 (338)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH
Confidence 46788888888888888877777655321100 0 000 012345666666 35777777767778888877777
Q ss_pred hc-cCeeccCc
Q 020848 127 AG-LTAYNHNL 136 (320)
Q Consensus 127 aG-ld~v~i~l 136 (320)
.| +|.|.++=
T Consensus 313 ~g~aD~V~lgR 323 (338)
T cd04733 313 SGAVDGIGLAR 323 (338)
T ss_pred cCCCCeeeeCh
Confidence 76 78887763
No 396
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=79.27 E-value=12 Score=31.89 Aligned_cols=74 Identities=12% Similarity=0.298 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCC-CCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHh-ccCeeccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDT-IGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 135 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~-~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~a-Gld~v~i~ 135 (320)
++..+.++.+.+.|++.+.+.+..... ...+.. ++.++.+++ .++++..+.|..+.+.+.++.+. |+|.|.++
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~----~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPAD----WDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCC----HHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 467777777777788777775532110 111222 244455553 46777777777788888888777 78888876
Q ss_pred c
Q 020848 136 L 136 (320)
Q Consensus 136 l 136 (320)
=
T Consensus 214 r 214 (231)
T cd02801 214 R 214 (231)
T ss_pred H
Confidence 3
No 397
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=79.01 E-value=12 Score=32.35 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHh-ccCeeccC
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~a-Gld~v~i~ 135 (320)
.++..+.++.+.+.|+..+.+.+-......+.. -+++++.++ ..++++..+.|..+.+.+..+.+. |+|.+.++
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~----~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY----DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC----CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 345566667777889998888652211111112 244455555 347888889899999999998887 89988875
No 398
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=78.90 E-value=14 Score=31.63 Aligned_cols=106 Identities=24% Similarity=0.373 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc---cCee
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG---LTAY 132 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG---ld~v 132 (320)
+.+.+.++.+++.|.. +.++.- . .. ....+++.++++.+.+.|.. +.-|.|.++++.+..|.+.= ++.+
T Consensus 108 ~~~~~~v~~ak~~g~~-v~~~~~--~-~~-~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~ 182 (237)
T PF00682_consen 108 ERIEEAVKYAKELGYE-VAFGCE--D-AS-RTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDI 182 (237)
T ss_dssp HHHHHHHHHHHHTTSE-EEEEET--T-TG-GSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhcCCc-eEeCcc--c-cc-cccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCC
Confidence 3333444455566653 344321 1 11 23456777777777766544 44567877776665554331 2213
Q ss_pred ccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 133 NHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 133 ~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.+++.. ..++.--+.+.-.+.++|.+.-=+.+.|+|+
T Consensus 183 ~l~~H~----------Hnd~Gla~An~laA~~aGa~~id~t~~GlG~ 219 (237)
T PF00682_consen 183 PLGFHA----------HNDLGLAVANALAALEAGADRIDGTLGGLGE 219 (237)
T ss_dssp EEEEEE----------BBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS
T ss_pred eEEEEe----------cCCccchhHHHHHHHHcCCCEEEccCccCCC
Confidence 343322 2233333555556677788754444667764
No 399
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=78.87 E-value=37 Score=30.81 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcC--ceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMG--MEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+..+.++.+.+.|++.|.+... .|.+ +...+.++.+|+.. +.+.. ....+.+.++.+.++|+|.|.+++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~----~G~~---~~~~~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSA----HGHS---VYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECC----CCCc---HHHHHHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEECC
Confidence 4455666777788888776432 1222 56777888888543 55444 234789999999999999988754
No 400
>PLN02334 ribulose-phosphate 3-epimerase
Probab=78.76 E-value=38 Score=28.93 Aligned_cols=61 Identities=10% Similarity=0.095 Sum_probs=40.0
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+.+-.+...+ ....+..++.++.+++. +.++.+..| ++.+.+..+.++|+|.+-++
T Consensus 140 ~Dyi~~~~v~pg~~~-~~~~~~~~~~i~~~~~~~~~~~I~a~GG-I~~e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 140 VDMVLVMSVEPGFGG-QSFIPSMMDKVRALRKKYPELDIEVDGG-VGPSTIDKAAEAGANVIVAG 202 (229)
T ss_pred CCEEEEEEEecCCCc-cccCHHHHHHHHHHHHhCCCCcEEEeCC-CCHHHHHHHHHcCCCEEEEC
Confidence 777766543332333 22445666667777643 455555545 68999999999999998776
No 401
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=78.75 E-value=36 Score=28.11 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.+++++.+.++.+.+.|++-+.+.... +. -.+.++.+++..-.+.+..|. ++.+.++.+.++|.+.+..
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~------~~----~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRT------PG----ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC------hh----HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 578999999999999999988775321 11 333556665321123344454 6699999999999998864
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
+- .+ .+.++.+++.|..+ ++|.. |.+|+.+.+ +.| .+.+.+++ ..
T Consensus 83 p~-------------~~----~~~~~~~~~~~~~~----i~gv~-t~~e~~~A~----~~G--ad~i~~~p-----~~-- 127 (190)
T cd00452 83 PG-------------LD----PEVVKAANRAGIPL----LPGVA-TPTEIMQAL----ELG--ADIVKLFP-----AE-- 127 (190)
T ss_pred CC-------------CC----HHHHHHHHHcCCcE----ECCcC-CHHHHHHHH----HCC--CCEEEEcC-----Cc--
Confidence 32 11 13445555666543 55554 666655443 466 77777632 11
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
+. .. ..+...+..+|+..+-..+ ++..+.-...+.+|++.+..+.
T Consensus 128 ----~~-g~---~~~~~l~~~~~~~p~~a~G---GI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 128 ----AV-GP---AYIKALKGPFPQVRFMPTG---GVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred ----cc-CH---HHHHHHHhhCCCCeEEEeC---CCCHHHHHHHHHCCCEEEEEch
Confidence 11 12 2233334455543222222 2344444567788999887665
No 402
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=78.68 E-value=23 Score=30.35 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~-~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++++++.+. +.+.|+.++.++.-... +.. -..+ ++++.+. ..++++....|.-+.+.+++|++.|++.+.
T Consensus 147 ~~~~~~~~~---~~~~g~~~ii~tdi~~dGt~~-G~d~----~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 147 IDLEEFAKR---LEELGAGEIILTDIDRDGTMQ-GPDL----ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp EEHHHHHHH---HHHTT-SEEEEEETTTTTTSS-S--H----HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred cCHHHHHHH---HHhcCCcEEEEeeccccCCcC-CCCH----HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 556665554 55689999988653221 111 1122 4455554 347889899999999999999999998887
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 219 vg 220 (229)
T PF00977_consen 219 VG 220 (229)
T ss_dssp ES
T ss_pred Ee
Confidence 65
No 403
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=78.68 E-value=14 Score=32.67 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 68 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+.|++.+.+- ....+++.+.++.+++. ++.+.++ |-++.+.+..+.+.|+|.+..|
T Consensus 204 a~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leas-GGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 204 VLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAA-GGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred HHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 345777777552 23457777777777632 4445555 4589999999999999999876
No 404
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=78.53 E-value=35 Score=30.55 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCch--hHHHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKT--NFNQILEYVKDI 102 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~--~~~~l~~~i~~~ 102 (320)
.+.+++...+..+.+.|++.|+..+|+.+..+... .--+++++++..
T Consensus 94 ~n~~~l~~~L~~~~~~GI~niLaLrGD~p~~~~~~~~~a~dLv~li~~~ 142 (296)
T PRK09432 94 ATPDELRTIAKDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKSV 142 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCcCHHHHHHHHHHh
Confidence 57889999999899999999998888766554321 223455555544
No 405
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.51 E-value=15 Score=33.84 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEecccCCCCCCchh--HHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-cC
Q 020848 56 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDTIGRKTN--FNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-LT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~~ge~~~--~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-ld 130 (320)
.++|+..+.++.+.+.| +.-+.+.++.....+.... ..+.....+.+| ...+++.++.+..+.+.++.+.+.| +|
T Consensus 234 ~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aD 313 (363)
T COG1902 234 LTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRAD 313 (363)
T ss_pred CCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 57788888888888888 6888877654432221111 234555555565 3356666666678888888888887 78
Q ss_pred eeccC
Q 020848 131 AYNHN 135 (320)
Q Consensus 131 ~v~i~ 135 (320)
-|.++
T Consensus 314 lVa~g 318 (363)
T COG1902 314 LVAMG 318 (363)
T ss_pred EEEec
Confidence 88776
No 406
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.42 E-value=16 Score=32.38 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc----CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 69 KEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM----GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 69 ~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~----~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.|++.|.|-. ...+.+.+.++.+++. .+.+.++.| ++.+.++++.+.|+|.++++
T Consensus 199 ~~agaDiI~LDn---------~~~e~l~~~v~~l~~~~~~~~~~leaSGG-I~~~ni~~yA~tGvD~Is~g 259 (278)
T PRK08385 199 AKAGADIIMLDN---------MTPEEIREVIEALKREGLRERVKIEVSGG-ITPENIEEYAKLDVDVISLG 259 (278)
T ss_pred HHcCcCEEEECC---------CCHHHHHHHHHHHHhcCcCCCEEEEEECC-CCHHHHHHHHHcCCCEEEeC
Confidence 446777665521 2345666666666543 234555544 79999999999999999987
No 407
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=78.38 E-value=48 Score=29.36 Aligned_cols=192 Identities=11% Similarity=0.056 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+.+-|.-.+.+... ...++.+..+++.+. +..+++.++..- .+.+.+.+-.++|.++|.
T Consensus 21 ~n~e~~~avi~AAe~~~sPvIi~~~~~~~~---~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQISEGAIK---YAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCcchhh---hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEE
Confidence 567888888888888886555433221111 123566777777665 456776655432 577888888899999888
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEEEEeCCC-------HHHHHHHHHHHhcCCCCCCeeeee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA-------EEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i~Glget-------~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
++-...+ . ..+.+...+.++.++..|+.+. ++-+-|..+. .-+..+..+|+++.| ++.+.+.
T Consensus 98 iD~S~l~-~------eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~Tg--vD~LAvs 168 (276)
T cd00947 98 IDGSHLP-F------EENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETG--VDALAVA 168 (276)
T ss_pred eCCCCCC-H------HHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHC--CCEEEec
Confidence 7643331 0 1234555788888999998754 5555444211 113566677778777 5554443
Q ss_pred eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 205 ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 205 ~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.=..+...+ ...+.++.+.+.++.... +-++ -+-+| .++..+.-..+...|++.+
T Consensus 169 iGt~HG~Y~-~~~p~L~~~~L~~i~~~~----~vPL-VlHGg-SG~~~e~~~~ai~~Gi~Ki 223 (276)
T cd00947 169 IGTSHGAYK-GGEPKLDFDRLKEIAERV----NVPL-VLHGG-SGIPDEQIRKAIKLGVCKI 223 (276)
T ss_pred cCccccccC-CCCCccCHHHHHHHHHHh----CCCE-EEeCC-CCCCHHHHHHHHHcCCeEE
Confidence 211111111 112445555433332222 2222 12121 2344444466788898877
No 408
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=78.34 E-value=13 Score=33.35 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCC---------------CC--CchhHHHHHHHHHHhhh-cCceEEEeCCCCCH
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDT---------------IG--RKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 118 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~---------------~g--e~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~ 118 (320)
+.+++.+.++.+.+.|++.+.+....... +| .+...+.-++.++.+++ .++++..+.|..+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~ 246 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSA 246 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCH
Confidence 35678888888888999887763211000 00 01112234566667764 47888888888899
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++..+|.|.|.++
T Consensus 247 ~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 247 EDAIEFIMAGASAVQVG 263 (301)
T ss_pred HHHHHHHHcCCCceeEc
Confidence 99999889999988875
No 409
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=77.95 E-value=48 Score=29.18 Aligned_cols=108 Identities=19% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC---chhHHHHHHHHHHhhhc--CceE--EEeCC----CC-CHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR---KTNFNQILEYVKDIRDM--GMEV--CCTLG----ML-EKHQAIE 123 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge---~~~~~~l~~~i~~~k~~--~~~i--~~~~g----~l-~~e~l~~ 123 (320)
++..++...+..+...|++.++..+|+.+..++ +..+++-.++++.+++. ++.+ ...+. .- .++.++.
T Consensus 70 ~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~ 149 (272)
T TIGR00676 70 ATREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIEN 149 (272)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHH
Confidence 678899999999999999999977776664432 12344566667666643 2332 22221 21 2334454
Q ss_pred H---HHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 124 L---KKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 124 L---~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
| .++|.+.+ +.+ .--+.+...+-++.+++.|+.+ -++.|+
T Consensus 150 L~~K~~aGA~f~-iTQ-----------~~fd~~~~~~~~~~~~~~gi~~--PIi~Gi 192 (272)
T TIGR00676 150 LKRKVDAGADYA-ITQ-----------LFFDNDDYYRFVDRCRAAGIDV--PIIPGI 192 (272)
T ss_pred HHHHHHcCCCeE-eec-----------cccCHHHHHHHHHHHHHcCCCC--CEeccc
Confidence 4 35677632 221 1235555566667777777653 345554
No 410
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=77.81 E-value=16 Score=31.39 Aligned_cols=74 Identities=12% Similarity=0.052 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.++.++.+. +.+.|+.++.++.-.+.-......++-+.++.+ ..++++....|..+.+.++.+.++|++.+-++
T Consensus 148 ~~~~~~~~~---~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~---~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 148 LNLFSFVRQ---LSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK---ATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred CCHHHHHHH---HHHcCCCEEEEecccCcCCCCccCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 455555554 455888888776432211111123332333222 24678888889999999999999999998875
No 411
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=77.75 E-value=45 Score=28.68 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHH----HHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQA----IELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l----~~L~~aGld~ 131 (320)
++.++.. .++.+.+.|.+++... ...+.+.+.+..+++.+.++.++..-.+.+.+ +.+.+ +.+.
T Consensus 33 ~d~~~~~-aa~~~~~~~~~ef~~~----------~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~-~~~~ 100 (233)
T cd02911 33 LDERTIE-AARKLVKRGRKEFLPD----------DPLEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAK-NAAI 100 (233)
T ss_pred cCHHHHH-HHHHHHhcCCcccccc----------chHHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhh-cCCE
Confidence 4444433 4566666777666321 14556666677676556565555443444433 33333 3477
Q ss_pred eccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeee
Q 020848 132 YNHNLDTS-REFYSKIIT---TRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPI 203 (320)
Q Consensus 132 v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~ 203 (320)
|.+++.-. +++.+.-.+ ..+++...+.++.+++.++++.+-+=.| .+ ++..++.+.+.+.| ++.+.+
T Consensus 101 ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g--~~-~~~~~la~~l~~aG--~d~ihv 171 (233)
T cd02911 101 LEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAG--VD-VDDEELARLIEKAG--ADIIHV 171 (233)
T ss_pred EEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCC--cC-cCHHHHHHHHHHhC--CCEEEE
Confidence 77666544 444332111 2467888888888887776665554443 33 56778888888888 565433
No 412
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=77.73 E-value=51 Score=29.36 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCC-CCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLG-MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g-~l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+.+-|.-.+.+. ......+.+..+++.+. +.++++.++.. .-+.+.+++-.++|.++|.
T Consensus 25 ~n~e~~~avi~AAe~~~sPvIlq~~~~~---~~~~~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM 101 (287)
T PF01116_consen 25 YNLETARAVIEAAEELNSPVILQISPSE---VKYMGLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVM 101 (287)
T ss_dssp SSHHHHHHHHHHHHHTTS-EEEEEEHHH---HHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcchhh---hhhhhHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccccc
Confidence 5678888888888888775554332111 11123567777777766 55788655532 2568888888899999887
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEEEEeCC---CH-------HHHHHHHHHHhcCCCCCCee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGE---AE-------EDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i~Glge---t~-------ed~~~~l~~l~~l~~~~~~v 201 (320)
++-...+ | ..+.....+..+.++..|+.+. ++.+-|..+ +. -+-.+..+|+++.| ++.+
T Consensus 102 ~DgS~l~--~-----eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~Tg--vD~L 172 (287)
T PF01116_consen 102 IDGSALP--F-----EENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETG--VDAL 172 (287)
T ss_dssp EE-TTS---H-----HHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHT--TSEE
T ss_pred ccCCcCC--H-----HHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhC--CCEE
Confidence 7533221 0 1134455678888999998754 555554411 11 14467778888887 6654
Q ss_pred eeeeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 202 PINALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 202 ~~~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.+..=..+.-.+-...|.++.+.+.++.+..+ +..+-+-+| .++..+.-..+...|++.+
T Consensus 173 AvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGg-SG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 173 AVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGG-SGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp EE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSC-TTS-HHHHHHHHHTTEEEE
T ss_pred EEecCccccccCCCCCcccCHHHHHHHHHhcC----CCCEEEECC-CCCCHHHHHHHHHcCceEE
Confidence 44221111111110123344444333333322 222222222 2344444567888898877
No 413
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.54 E-value=28 Score=31.14 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEecccCCC-C-CCc--hhHHHHHHHHHHhhhc-CceEEEeCCC-C--CHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAG-STRFCMGAAWRDT-I-GRK--TNFNQILEYVKDIRDM-GMEVCCTLGM-L--EKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-~~~i~l~~g~~~~-~-ge~--~~~~~l~~~i~~~k~~-~~~i~~~~g~-l--~~e~l~~L~~ 126 (320)
.+++++.+.++.+.+.| ++.|-|--+.+.. . |.. ...+.+.++++.+++. ++++.+-... . ..+.++.|.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHH
Confidence 36899999999888888 8888773221111 1 111 1235677777787743 5665443222 1 2355778889
Q ss_pred hccCeecc
Q 020848 127 AGLTAYNH 134 (320)
Q Consensus 127 aGld~v~i 134 (320)
+|+|.+.+
T Consensus 181 ~G~d~i~~ 188 (301)
T PRK07259 181 AGADGLSL 188 (301)
T ss_pred cCCCEEEE
Confidence 99998754
No 414
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.52 E-value=14 Score=32.83 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.||+.+. .+.|++.|.+- ....+++.+.++.++... .+.++ |-++.+.++.+.+.|+|.|+++-
T Consensus 203 tleea~ea----~~~gaDiI~LD---------n~s~e~l~~av~~~~~~~-~leaS-GGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEA----LELGVDAVLLD---------NMTPDTLREAVAIVAGRA-ITEAS-GRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHH----HHcCCCEEEeC---------CCCHHHHHHHHHHhCCCc-eEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 44544443 35677777552 123467777777665322 24445 55899999999999999999873
No 415
>PLN02591 tryptophan synthase
Probab=77.49 E-value=48 Score=28.89 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCeeeeeEEEEeCCC-HHHHHHHH
Q 020848 153 DERLETLKHVREAGINVCSGGIIGLGEA-EEDRVGLL 188 (320)
Q Consensus 153 ~~~l~~i~~a~~~Gi~v~~~~i~Glget-~ed~~~~l 188 (320)
++..+.++.+++. ...-+++|+|-+ .+++.+.+
T Consensus 175 ~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~ 208 (250)
T PLN02591 175 GRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIA 208 (250)
T ss_pred hhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHH
Confidence 4445556666663 344557788754 67766544
No 416
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=77.43 E-value=12 Score=33.08 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 67 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 67 ~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.|++.+.+. |...+.+-+.++.+++ .+++.+..| ++.+.+..+.++|+|.+.++
T Consensus 197 ~A~~~gaDyI~ld---------~~~~e~l~~~~~~~~~-~ipi~AiGG-I~~~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 197 EALEAGADIIMLD---------NMSPEELREAVALLKG-RVLLEASGG-ITLENIRAYAETGVDYISVG 254 (268)
T ss_pred HHHHcCCCEEEEC---------CcCHHHHHHHHHHcCC-CCcEEEECC-CCHHHHHHHHHcCCCEEEEE
Confidence 3345788777663 2234555555554432 455555544 78999999999999998875
No 417
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=77.29 E-value=55 Score=29.45 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCC-CCchh-----HHHHHHHHHHhhhcCceEEE-eCCCCCHHHHHHHHHhccCeecc
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTI-GRKTN-----FNQILEYVKDIRDMGMEVCC-TLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~-ge~~~-----~~~l~~~i~~~k~~~~~i~~-~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.+.++...+.|+..+.+...+-... -.|.. .+.+.++++.+++.|..+.. ..|. +...+..|.+.|+|.+++
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~~lH~cG~-~~~~~~~l~~~~~d~~~~ 249 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHNCGD-TAPILELMADLGADVFSI 249 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCceEEEECCC-chhHHHHHHHhCCCeEee
Confidence 3333444566888777753211111 01222 34455666667765655333 3453 347799999999998776
Q ss_pred Cc
Q 020848 135 NL 136 (320)
Q Consensus 135 ~l 136 (320)
..
T Consensus 250 d~ 251 (330)
T cd03465 250 DV 251 (330)
T ss_pred cc
Confidence 53
No 418
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=77.12 E-value=32 Score=33.25 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++++ ++.++.+.+.|++-+.+... .|.. ...++.++.+|+. ++.+.+ ....+.+.++.+.++|+|.|.+
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a----~G~s---~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~v 309 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSS----QGNS---IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLRI 309 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecC----CCCc---hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 3444 77788889999999988542 1322 2346778888854 344444 2348899999999999999976
Q ss_pred Ccccc-H-HHHhhhCCC-CCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHH
Q 020848 135 NLDTS-R-EFYSKIITT-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLH 189 (320)
Q Consensus 135 ~let~-~-~~~~~i~~~-~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~ 189 (320)
++-.. - ........+ ..+..+.+..+.+++.|+.+ +. |. .+..|+.+.+.
T Consensus 310 g~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~v----IadGGi-~~~~di~kAla 364 (495)
T PTZ00314 310 GMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPC----IADGGI-KNSGDICKALA 364 (495)
T ss_pred CCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeE----EecCCC-CCHHHHHHHHH
Confidence 55321 1 000010111 23445555666666677553 33 22 36667666553
No 419
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=77.12 E-value=67 Score=30.37 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=101.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cce-EEEeCCC--CCHHHHHHHHHhcc
Q 020848 54 KLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME-VCCTLGM--LEKHQAIELKKAGL 129 (320)
Q Consensus 54 ~~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~-i~~~~g~--l~~e~l~~L~~aGl 129 (320)
+..++++.++.++.+.+.|++.+.++. |.......+.++.+++. +.. +...... .....++.+.++|.
T Consensus 11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~--------p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGA 82 (430)
T PRK07028 11 DLLELDRAVEIAKEAVAGGADWIEAGT--------PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGA 82 (430)
T ss_pred ccCCHHHHHHHHHHHHhcCCcEEEeCC--------HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCC
Confidence 347889999999998889998886521 33334556777777643 222 2111111 13458899999999
Q ss_pred CeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeec
Q 020848 130 TAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAV 209 (320)
Q Consensus 130 d~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~ 209 (320)
+.+.+.-++. .....+.++.+++.|+.+.+++ + ..++..+ .++.+.++| ++.+.+.+...
T Consensus 83 dgV~v~g~~~------------~~~~~~~i~~a~~~G~~~~~g~-~-s~~t~~e---~~~~a~~~G--aD~I~~~pg~~- 142 (430)
T PRK07028 83 DIVCILGLAD------------DSTIEDAVRAARKYGVRLMADL-I-NVPDPVK---RAVELEELG--VDYINVHVGID- 142 (430)
T ss_pred CEEEEecCCC------------hHHHHHHHHHHHHcCCEEEEEe-c-CCCCHHH---HHHHHHhcC--CCEEEEEeccc-
Confidence 9988632211 1113466777888888764432 1 1233222 234455666 67775542211
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCCCCChhHHHHHHHH
Q 020848 210 KGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKV 289 (320)
Q Consensus 210 ~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~~~~~~~~~~i~~ 289 (320)
+... . ....+.++ ..+...+ ..+-+.+ ++..+.....+.+|++.+..|..+... .++.+.++.+++
T Consensus 143 -~~~~---~-~~~~~~l~---~l~~~~~-iPI~a~G---GI~~~n~~~~l~aGAdgv~vGsaI~~~--~d~~~~~~~l~~ 208 (430)
T PRK07028 143 -QQML---G-KDPLELLK---EVSEEVS-IPIAVAG---GLDAETAAKAVAAGADIVIVGGNIIKS--ADVTEAARKIRE 208 (430)
T ss_pred -hhhc---C-CChHHHHH---HHHhhCC-CcEEEEC---CCCHHHHHHHHHcCCCEEEEChHHcCC--CCHHHHHHHHHH
Confidence 1111 1 12222222 2222222 1121222 344444566788999999887644332 244444444433
No 420
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=77.10 E-value=17 Score=32.20 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEEEe
Q 020848 56 MTKDAVMQAAQKAKEAG-STRFCMG 79 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g-~~~i~l~ 79 (320)
.++++..+.++.+++.- ...|+|.
T Consensus 130 ~~~~e~v~rIkAa~~a~~~~~fvi~ 154 (289)
T COG2513 130 VSIDEMVDRIKAAVEARRDPDFVII 154 (289)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEE
Confidence 56777777777666543 2344443
No 421
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=77.05 E-value=14 Score=32.93 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=39.0
Q ss_pred HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 67 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 67 ~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.|++.|.+- ....+++.++++.++. .+.+.++ |-++.+.++++.+.|+|.|+++
T Consensus 223 ea~~~gaDiI~LD---------n~s~e~~~~av~~~~~-~~~ieaS-GGI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 223 QALKAGADIIMLD---------NFTTEQMREAVKRTNG-RALLEVS-GNVTLETLREFAETGVDFISVG 280 (296)
T ss_pred HHHHcCCCEEEeC---------CCChHHHHHHHHhhcC-CeEEEEE-CCCCHHHHHHHHhcCCCEEEeC
Confidence 3344677666552 1233666666665553 3445555 5589999999999999999886
No 422
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=77.04 E-value=19 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeEE
Q 020848 150 RSYDERLETLKHVREAGINVCSGGI 174 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~i 174 (320)
..+...++.++.+.+.|+++.++.+
T Consensus 275 GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 275 GGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred CCHHHHHHHHHHHHHcCCeEeccCC
Confidence 3577778888888888888655543
No 423
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=77.01 E-value=49 Score=28.70 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=74.7
Q ss_pred CCCCHH-HHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHH-------
Q 020848 114 GMLEKH-QAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRV------- 185 (320)
Q Consensus 114 g~l~~e-~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~------- 185 (320)
|..|-| -.+.|+++|++++-++--- ++.+ -+.+.+.+-+.++.+.+.|+.+ |+-.||+.++..
T Consensus 69 Ga~TGevS~~mL~d~G~~~viiGHSE----RR~~-f~Et~~~i~~Kv~~a~~~gl~p----IvCiGE~~~~r~~~~~~~~ 139 (242)
T cd00311 69 GAFTGEISAEMLKDAGAKYVIIGHSE----RRQY-FGETDEDVAKKVKAALEAGLTP----ILCVGETLEEREAGKTEEV 139 (242)
T ss_pred CCCcCcCCHHHHHHcCCCEEEeCccc----ccCc-CCCCcHHHHHHHHHHHHCCCEE----EEEeCCCHHHHHcCCHHHH
Confidence 443333 3667889999999887521 1111 1357788888899999999764 454678876552
Q ss_pred ---HHHHHHhcCCCCCCeeeeeeeeecC--CCCCCCCCCCCHHHHHHHHHHHHHhCCCc------eeec-CCcccccChh
Q 020848 186 ---GLLHTLATLPTHPESVPINALLAVK--GTPLQDQKPVEIWEMIRMIATARIVMPKA------MVRL-SAGRVRFSMP 253 (320)
Q Consensus 186 ---~~l~~l~~l~~~~~~v~~~~~~p~~--gt~~~~~~~~~~~e~~~~~a~~R~~~p~~------~i~~-~~g~~~~~~~ 253 (320)
++...+..+. .... -+..|-|+- ||. ..+++++..++.+..|..+... .+++ -+| ++.++
T Consensus 140 ~~~Ql~~~l~~~~-~~~~-~iIAYEPvWAIGtG----~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGG--SV~~~ 211 (242)
T cd00311 140 VAAQLAAVLAGVE-DLAP-VVIAYEPVWAIGTG----KTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGG--SVNPE 211 (242)
T ss_pred HHHHHHHHHhcch-hhcC-eEEEECCHHHhCCC----CCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECC--CCCHH
Confidence 1111111110 0111 234555532 654 2456777777777666655321 1222 122 23333
Q ss_pred HHHHHHHcC-CceEeeCC
Q 020848 254 EQALCFLAG-ANSIFTGE 270 (320)
Q Consensus 254 ~~~~~~~~G-an~~~~~~ 270 (320)
.....+..+ ++.++.|.
T Consensus 212 N~~~l~~~~~vDG~LVG~ 229 (242)
T cd00311 212 NAAELLAQPDIDGVLVGG 229 (242)
T ss_pred HHHHHhcCCCCCEEEeeh
Confidence 333444444 77777765
No 424
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=76.77 E-value=59 Score=29.52 Aligned_cols=190 Identities=19% Similarity=0.194 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhh-hcCceEEEeC-CCCC---HHHHHHHHHhccCeeccCccccHHHHhhhCCCCCH-HHHHHHHHHHHHc
Q 020848 92 FNQILEYVKDIR-DMGMEVCCTL-GMLE---KHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSY-DERLETLKHVREA 165 (320)
Q Consensus 92 ~~~l~~~i~~~k-~~~~~i~~~~-g~l~---~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~-~~~l~~i~~a~~~ 165 (320)
.+.+++.++..+ ..+.++.++. |.-. .+.++.+.++|+|.+.+++-..+.. ... .+.+. +.+.+.++.+++.
T Consensus 84 ~~~~~~~i~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~-~~~-~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 84 PEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD-PDI-SGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-CCc-ccchHHHHHHHHHHHHHhc
Confidence 456666666655 3355544443 3221 2456666777889887776432100 011 12222 3345555555543
Q ss_pred -CCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC--------C-CCCCHHHHHHHHHHHHHh
Q 020848 166 -GINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD--------Q-KPVEIWEMIRMIATARIV 235 (320)
Q Consensus 166 -Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~--------~-~~~~~~e~~~~~a~~R~~ 235 (320)
.+++.+-+ .-+..++.++++.+.+.| ++.+.+..-.+.+.-.+.. . .+......++++...+..
T Consensus 162 ~~iPv~vKl----~p~~~~~~~~a~~l~~~G--adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~ 235 (325)
T cd04739 162 VTIPVAVKL----SPFFSALAHMAKQLDAAG--ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGR 235 (325)
T ss_pred cCCCEEEEc----CCCccCHHHHHHHHHHcC--CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcc
Confidence 34433332 223346788888888887 5666554322211110000 0 011111223444433322
Q ss_pred CCCceeec--CCcccccChhHHHHHHHcCCceEeeCCccccCCC----CChhHHHHHHHHcCCCc
Q 020848 236 MPKAMVRL--SAGRVRFSMPEQALCFLAGANSIFTGEKLLTTPN----NDFDADQLMFKVLGLTP 294 (320)
Q Consensus 236 ~p~~~i~~--~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~~----~~~~~~~~~i~~~G~~p 294 (320)
. .+++ .+|-. ........+.+||+.+..+..++..+- .=.+++.+.+.+.||.-
T Consensus 236 ~---~ipIig~GGI~--s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~~ 295 (325)
T cd04739 236 V---KASLAASGGVH--DAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYES 295 (325)
T ss_pred c---CCCEEEECCCC--CHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCCC
Confidence 2 2232 22211 233345667799999977754443221 12555667778888853
No 425
>PRK14017 galactonate dehydratase; Provisional
Probab=76.74 E-value=19 Score=33.50 Aligned_cols=84 Identities=6% Similarity=-0.088 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccC--ccccHHHHhhhC------------CCCCHHHH
Q 020848 91 NFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHN--LDTSREFYSKII------------TTRSYDER 155 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~--let~~~~~~~i~------------~~~~~~~~ 155 (320)
..++..++++.+.+.++.. .-....-+.+.+++|++..---|..+ +.+..+..+.+. +-......
T Consensus 189 ~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~ 268 (382)
T PRK14017 189 HKPMAKVLAKELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITEC 268 (382)
T ss_pred CHHHHHHHHHhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHH
Confidence 4456666666666555542 21112234566666666521111111 111111111111 12357788
Q ss_pred HHHHHHHHHcCCeeeeeEE
Q 020848 156 LETLKHVREAGINVCSGGI 174 (320)
Q Consensus 156 l~~i~~a~~~Gi~v~~~~i 174 (320)
++..+.+...|+++.++.+
T Consensus 269 ~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 269 RKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHHHHHHHcCCeEeecCC
Confidence 8889999999998766654
No 426
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=76.70 E-value=28 Score=29.73 Aligned_cols=75 Identities=17% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEe-cccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKE-AGSTRFCMG-AAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~-~g~~~i~l~-~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+++...+..+.+ +|.+-+++- ||+ .|++.. .++++.+++.-. ++++..--|..+.+.++.+.++|.|.+.
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~---~g~~v~-~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VV 206 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSG---APEPVP-PELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIV 206 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCC---CCCCcC-HHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 577888887777666 699888884 332 133323 334444433221 5777788899999999999999999998
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 207 VG 208 (223)
T TIGR01768 207 TG 208 (223)
T ss_pred EC
Confidence 86
No 427
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=76.36 E-value=21 Score=32.14 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=50.1
Q ss_pred HHHHHHHhccCeeccCcccc-HHHHhhhCC---CCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHHHHHHHhcC
Q 020848 120 QAIELKKAGLTAYNHNLDTS-REFYSKIIT---TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 120 ~l~~L~~aGld~v~i~let~-~~~~~~i~~---~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~~l~~l~~l 194 (320)
.++.+.+.|++.|.+.+=-. +.+.+.-.+ -.+++...+.++.+++ .++++.+.+=+|..++.++..++++.+.+.
T Consensus 71 aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~ 150 (309)
T PF01207_consen 71 AAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDA 150 (309)
T ss_dssp HHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHT
T ss_pred HHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhc
Confidence 33444444666655544322 333322111 1477788888888776 467888888888877788899999999999
Q ss_pred CCCCCeeeeeee
Q 020848 195 PTHPESVPINAL 206 (320)
Q Consensus 195 ~~~~~~v~~~~~ 206 (320)
| ++.+.++.-
T Consensus 151 G--~~~i~vH~R 160 (309)
T PF01207_consen 151 G--VSAITVHGR 160 (309)
T ss_dssp T----EEEEECS
T ss_pred c--cceEEEecC
Confidence 8 666666554
No 428
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=76.31 E-value=26 Score=29.86 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hc-CceEEEeCCCCCHHHHHHHHHhccCee
Q 020848 55 LMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DM-GMEVCCTLGMLEKHQAIELKKAGLTAY 132 (320)
Q Consensus 55 ~~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~-~~~i~~~~g~l~~e~l~~L~~aGld~v 132 (320)
..++|++...+..+..+|..-+.+-++ |.+.. .++++.++ .. ++++..--|..+.++++.+.++|.|.+
T Consensus 131 ~~~~e~~~ayA~aae~~g~~ivyLe~S-----G~~~~----~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~V 201 (219)
T cd02812 131 DLKPEDAAAYALAAEYLGMPIVYLEYS-----GAYGP----PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTI 201 (219)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEeCCC-----CCcCC----HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 378999999999888899666666421 11111 23344444 23 677888889999999999999999999
Q ss_pred ccC
Q 020848 133 NHN 135 (320)
Q Consensus 133 ~i~ 135 (320)
-++
T Consensus 202 VVG 204 (219)
T cd02812 202 VVG 204 (219)
T ss_pred EEC
Confidence 886
No 429
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=76.12 E-value=53 Score=28.71 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=62.8
Q ss_pred HHHHHcCCCEEEEecc------cCCCCCCchhHHHHHHHHHHhhh-cCce-EEEeC--C-CCC-H----HH-HHHHHHhc
Q 020848 66 QKAKEAGSTRFCMGAA------WRDTIGRKTNFNQILEYVKDIRD-MGME-VCCTL--G-MLE-K----HQ-AIELKKAG 128 (320)
Q Consensus 66 ~~~~~~g~~~i~l~~g------~~~~~ge~~~~~~l~~~i~~~k~-~~~~-i~~~~--g-~l~-~----e~-l~~L~~aG 128 (320)
+.+.+.|++-+..+++ +.+.. .+..+++++..++.+.+ .+.+ +.... | ..+ . +. .+.++++|
T Consensus 26 ~l~e~aG~d~i~vGds~~~~~lG~pDt-~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aG 104 (254)
T cd06557 26 KLADEAGVDVILVGDSLGMVVLGYDST-LPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAG 104 (254)
T ss_pred HHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhC
Confidence 3445578988874322 12222 24677888888888763 3444 33332 2 223 2 22 34445599
Q ss_pred cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeE--------EE-E---eCCCHHHHHHHHHHHhcC
Q 020848 129 LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGG--------II-G---LGEAEEDRVGLLHTLATL 194 (320)
Q Consensus 129 ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~--------i~-G---lget~ed~~~~l~~l~~l 194 (320)
++.|.+- .. ++..+.|+.+.+.|+++..|+ .. | .+.+++...++++.++.+
T Consensus 105 a~aVkiE--d~-------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~ 167 (254)
T cd06557 105 ADAVKLE--GG-------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALAL 167 (254)
T ss_pred CeEEEEc--Cc-------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHH
Confidence 9888772 11 355788888889997754221 11 1 144665566666655544
No 430
>PRK08005 epimerase; Validated
Probab=76.07 E-value=23 Score=30.00 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+-+..++.+|. ...+..++-++.+++. ...+.+. |-++.+.+..++++|+|.+-.+
T Consensus 129 vD~VlvMsV~PGf~GQ-~f~~~~~~KI~~l~~~~~~~~I~VD-GGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 129 LDALMIMTSEPDGRGQ-QFIAAMCEKVSQSREHFPAAECWAD-GGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred cCEEEEEEecCCCccc-eecHHHHHHHHHHHHhcccCCEEEE-CCCCHHHHHHHHHCCCCEEEEC
Confidence 4455555544445453 3555666666666543 2234444 4477888888888888877665
No 431
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=76.07 E-value=18 Score=31.97 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
.+++|+.+. .+.|++.+.+.. .....+.++++.++.. .+++..+.| ++.+.+..+.++|+|.+.
T Consensus 191 ~t~eea~~A----~~~gaD~I~ld~---------~~p~~l~~~~~~~~~~~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~ 256 (272)
T cd01573 191 DSLEEALAA----AEAGADILQLDK---------FSPEELAELVPKLRSLAPPVLLAAAGG-INIENAAAYAAAGADILV 256 (272)
T ss_pred CCHHHHHHH----HHcCCCEEEECC---------CCHHHHHHHHHHHhccCCCceEEEECC-CCHHHHHHHHHcCCcEEE
Confidence 355554443 357887776631 1223455555555543 466667766 699999999999999996
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 257 vs 258 (272)
T cd01573 257 TS 258 (272)
T ss_pred EC
Confidence 65
No 432
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=76.00 E-value=42 Score=28.63 Aligned_cols=179 Identities=17% Similarity=0.185 Sum_probs=104.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC----CC----HHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM----LE----KHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~----l~----~e~l~~L~~a 127 (320)
.+.++|.+.+..+.+.++..+|+- |.+.+...+.++. .....+++..|. .+ --+.+...+.
T Consensus 21 ~T~~~I~~l~~eA~~~~f~avCV~---------P~~V~~A~~~l~g--~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~ 89 (228)
T COG0274 21 ATEEDIARLCAEAKEYGFAAVCVN---------PSYVPLAKEALKG--STVVRVCTVIGFPLGANTTAVKAAEAREAIEN 89 (228)
T ss_pred CCHHHHHHHHHHHHhhCceEEEEC---------cchHHHHHHHhcc--CCCeEEEEecCCCCCCChHHHHHHHHHHHHHc
Confidence 689999999999999999999883 4444444443332 123345444332 22 3345666777
Q ss_pred ccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHc-CCeeeeeEEEEe-CCCHHHHHHHHHHHhcCCCCCCeeeeee
Q 020848 128 GLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREA-GINVCSGGIIGL-GEAEEDRVGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 128 Gld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~-Gi~v~~~~i~Gl-get~ed~~~~l~~l~~l~~~~~~v~~~~ 205 (320)
|.|.|-+-+.- ..+ ..++|+.+.+-|+..+++ +-.+.+-+|+-. --++++....-+.+.+-| .+.|.-.
T Consensus 90 GAdEiDmVini-----g~~-k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aG--AdFVKTS- 160 (228)
T COG0274 90 GADEIDMVINI-----GAL-KSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAG--ADFVKTS- 160 (228)
T ss_pred CCCeeeeeeeH-----HHH-hcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhC--CCEEEcC-
Confidence 88877654321 111 256888888888877764 322556667766 357888888888888888 6655443
Q ss_pred eeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 206 LLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 206 ~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
|-+. ....+.++..-|.. ..-+...+..++|-... +.....+.+|+.++
T Consensus 161 ------TGf~-~~gAT~edv~lM~~---~vg~~vgvKaSGGIrt~--eda~~~i~aga~Ri 209 (228)
T COG0274 161 ------TGFS-AGGATVEDVKLMKE---TVGGRVGVKASGGIRTA--EDAKAMIEAGATRI 209 (228)
T ss_pred ------CCCC-CCCCCHHHHHHHHH---HhccCceeeccCCcCCH--HHHHHHHHHhHHHh
Confidence 2222 12344554333322 23444556666543322 22345566776655
No 433
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=75.68 E-value=25 Score=30.18 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=35.6
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhh----hcCce--EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMGME--VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k----~~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+-+..++.+|.. ..+..++-|++++ +.++. +.+. |-++.+.++.++++|+|.+-.+
T Consensus 141 vD~VLiMtV~PGfgGQ~-f~~~~l~KI~~lr~~~~~~~~~~~IeVD-GGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 141 IDLIQILTLDPRTGTKA-PSDLILDRVIQVENRLGNRRVEKLISID-GSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred cCEEEEEEECCCCCCcc-ccHHHHHHHHHHHHHHHhcCCCceEEEE-CCCCHHHHHHHHHCCCCEEEEC
Confidence 45566655545555533 4444555555544 22433 4444 4477888888888888876654
No 434
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=75.65 E-value=16 Score=32.17 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=38.5
Q ss_pred HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 67 KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 67 ~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.+.|++.+.+. |...+.+-+.++.++. .+++... |-++.+.+..+.++|+|.+.++
T Consensus 193 ~A~~~gaDyI~ld---------~~~~e~lk~~v~~~~~-~ipi~As-GGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 193 EAAEAGADIIMLD---------NMKPEEIKEAVQLLKG-RVLLEAS-GGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred HHHHcCCCEEEEC---------CCCHHHHHHHHHHhcC-CCcEEEE-CCCCHHHHHHHHHcCCCEEEeC
Confidence 3445788877663 2233555555555442 2555555 4478999999999999999886
No 435
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.60 E-value=18 Score=32.30 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 68 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.+.|++.|.+- ....+.+.+.++.++. .+.+.++ |-++.+.++++.+.|+|.|+++-
T Consensus 221 A~~aGaDiImLD---------nmspe~l~~av~~~~~-~~~lEaS-GGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 221 ALAHGAQSVLLD---------NFTLDMMREAVRVTAG-RAVLEVS-GGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred HHHcCCCEEEEC---------CCCHHHHHHHHHhhcC-CeEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 345788777652 1234556666665553 2344455 55899999999999999999873
No 436
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=75.59 E-value=21 Score=33.20 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC--CCchh---HHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhc-
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTI--GRKTN---FNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG- 128 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~--ge~~~---~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aG- 128 (320)
+++|+.++.++.+.+.|++.+.+.+|..... ..+.. .....+.++.+|+ .++++..+.+..+.+.+++..+.|
T Consensus 249 ~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~ 328 (382)
T cd02931 249 RDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGI 328 (382)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCC
Confidence 6889999999999889999998876642110 00100 1123455666663 577888888888999888888776
Q ss_pred cCeeccCcccc--HHHHhhhCCC
Q 020848 129 LTAYNHNLDTS--REFYSKIITT 149 (320)
Q Consensus 129 ld~v~i~let~--~~~~~~i~~~ 149 (320)
+|.|.++=-.. |++.+++..+
T Consensus 329 ~D~V~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 329 ADMISLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred CCeeeechHhHhCccHHHHHHcC
Confidence 89998873332 4555555443
No 437
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=75.56 E-value=44 Score=30.84 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHcCCeeeeeE
Q 020848 150 RSYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 150 ~~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
......++....+.+.|+.+.++.
T Consensus 276 GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 276 GGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEC
Confidence 357777888888888888875543
No 438
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.56 E-value=21 Score=31.76 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccC-----C-------------CCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCH
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWR-----D-------------TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEK 118 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~-----~-------------~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~ 118 (320)
.+++.+.++.+.+.|++.+.+..... . ..| +...+.-++.++.+++ .++++..+.|..+.
T Consensus 165 ~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg-~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 165 VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSG-PAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecC-cccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 35677777777888988876632100 0 001 1223345566777763 57888888888898
Q ss_pred HHHHHHHHhccCeeccC
Q 020848 119 HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 119 e~l~~L~~aGld~v~i~ 135 (320)
+.+.++.++|.|.|.++
T Consensus 244 ~da~~~l~~GAd~V~ig 260 (296)
T cd04740 244 EDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 88888888999999886
No 439
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=75.39 E-value=35 Score=36.63 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++-+++.++.+.+.|+..++|-. +.| -..-..+.++++.+| ..+++ +++++ |.-....+. -.++|+|
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikD----t~G-ll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~la-A~eaGad 759 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKD----MAG-LLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLA-AVEAGVD 759 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----CcC-CcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHH-HHHhCCC
Confidence 5788899999999999999999842 223 123355666777776 33544 34443 433333343 4588999
Q ss_pred eeccCcccc
Q 020848 131 AYNHNLDTS 139 (320)
Q Consensus 131 ~v~i~let~ 139 (320)
.|..++.+.
T Consensus 760 ~vD~ai~gl 768 (1143)
T TIGR01235 760 VVDVAVDSM 768 (1143)
T ss_pred EEEecchhh
Confidence 998877554
No 440
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=75.29 E-value=19 Score=31.08 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEEEecccCCCCCCchhHHHHHHHHHHhh---hcCceEEEeCCCCCHHHHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEA-GSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR---DMGMEVCCTLGMLEKHQAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~-g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k---~~~~~i~~~~g~l~~e~l~~L~~a 127 (320)
+|.|+..+.++.+++. .-..++|..=+ .... ..-..+-+.|++.+ +.|.....-.|..+.+.++++.+.
T Consensus 117 ~~~ee~~~kI~Aa~~a~~~~~~~I~ART-Da~~--~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~ 189 (238)
T PF13714_consen 117 VSPEEMVAKIRAAVDARRDPDFVIIART-DAFL--RAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKA 189 (238)
T ss_dssp --HHHHHHHHHHHHHHHSSTTSEEEEEE-CHHC--HHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhccCCeEEEEEec-cccc--cCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHh
Confidence 5777877777766653 22224443210 0000 01344555555554 456665555666667667666554
No 441
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.12 E-value=54 Score=28.31 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHH
Q 020848 91 NFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVR 163 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~ 163 (320)
..+.+.+.++.+|+. ...+.+-.|..+.+.++.+.++|.|.+-++= .+++.+. ..+.+...+.++.++
T Consensus 168 ~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS----ai~~~~~-~~~~~~~~~~~~~~~ 237 (244)
T PRK13125 168 LPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGT----AFIEELE-KNGVESALNLLKKIR 237 (244)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECH----HHHHHHH-hcCHHHHHHHHHHHH
Confidence 445666677777743 2445666676688888888888888887762 2222221 123555555555544
No 442
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=75.02 E-value=41 Score=29.51 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhccCeeccCc-------ccc--H-HHHhhhCCCCCHHHHHHHHHHHHHcCCe
Q 020848 117 EKHQAIELKKAGLTAYNHNL-------DTS--R-EFYSKIITTRSYDERLETLKHVREAGIN 168 (320)
Q Consensus 117 ~~e~l~~L~~aGld~v~i~l-------et~--~-~~~~~i~~~~~~~~~l~~i~~a~~~Gi~ 168 (320)
+.+.++.|.++|+|.+.+++ |+. . ...+.+..+.+.++.++.++.+++.+..
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~ 94 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVK 94 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCC
Confidence 34455555566666665554 221 1 2233344455666667777666665544
No 443
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=74.98 E-value=60 Score=28.79 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=101.0
Q ss_pred EEEeCCCCCHHHHHHHHHhccCeeccCccccHHHHhhhCC-CCCHHHHHHHHHHHHH-cCCeeeeeEEEEeCCCHHHHHH
Q 020848 109 VCCTLGMLEKHQAIELKKAGLTAYNHNLDTSREFYSKIIT-TRSYDERLETLKHVRE-AGINVCSGGIIGLGEAEEDRVG 186 (320)
Q Consensus 109 i~~~~g~l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~-~~~~~~~l~~i~~a~~-~Gi~v~~~~i~Glget~ed~~~ 186 (320)
+...+|..+.-......++|...+.+|=-+....+-.-.. ..++++++..++.+.+ ..+++.+++=-|.|+ ...+.+
T Consensus 19 ~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvar 97 (289)
T COG2513 19 PLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVAR 97 (289)
T ss_pred CEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHH
Confidence 3455678888899999999999887763333111111111 2368999999988776 578899999899998 889999
Q ss_pred HHHHHhcCCCCCCeeeee-eeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCc--eeecCC---cccccChh--HHHHH
Q 020848 187 LLHTLATLPTHPESVPIN-ALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKA--MVRLSA---GRVRFSMP--EQALC 258 (320)
Q Consensus 187 ~l~~l~~l~~~~~~v~~~-~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~--~i~~~~---g~~~~~~~--~~~~~ 258 (320)
++..+.+.| ..-+.+- .-.|.....+...+-.+.++..+.+..+...-++. .|..-+ ...++... .....
T Consensus 98 tV~~~~~aG--~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 98 TVRELEQAG--AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHcC--cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 999999988 4444442 22232222234556678899888888877766542 222111 11222221 22345
Q ss_pred HHcCCceEeeC
Q 020848 259 FLAGANSIFTG 269 (320)
Q Consensus 259 ~~~Gan~~~~~ 269 (320)
..+||+.++..
T Consensus 176 ~eAGAD~if~~ 186 (289)
T COG2513 176 VEAGADAIFPE 186 (289)
T ss_pred HHcCCcEEccc
Confidence 67999999764
No 444
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=74.77 E-value=81 Score=30.16 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
.++.++.+ .+ ..|+..+.+.+-..-..| .++++ +.++ ...+++....-.+++-++.+-+.+|.|.|.+
T Consensus 70 ~d~~~~a~---~y-~~gA~aiSVlTe~~~F~G---s~~~l----~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLL 138 (454)
T PRK09427 70 FDPAEIAR---VY-KHYASAISVLTDEKYFQG---SFDFL----PIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILL 138 (454)
T ss_pred CCHHHHHH---HH-HcCCeEEEEecCcCcCCC---CHHHH----HHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhH
Confidence 45555444 34 567777766543222333 23333 3444 3456776666678999999999999999887
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
-.... +.++..+.++.+++.|+.+ ++-. .+.+|+...+ +.+ ...++++.- .+
T Consensus 139 I~~~L-----------~~~~l~~l~~~a~~lGl~~----lvEv-h~~~El~~al----~~~--a~iiGiNnR------dL 190 (454)
T PRK09427 139 MLSVL-----------DDEQYRQLAAVAHSLNMGV----LTEV-SNEEELERAI----ALG--AKVIGINNR------NL 190 (454)
T ss_pred HHHhC-----------CHHHHHHHHHHHHHcCCcE----EEEE-CCHHHHHHHH----hCC--CCEEEEeCC------CC
Confidence 54333 2234456678888889874 3322 4667766544 345 555666543 22
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCCccccCC-----------------C
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLLTTP-----------------N 277 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~~~~-----------------~ 277 (320)
... ..+.....++ ..++|...+.++. .++....+...+..|++.+..|+.++++. |
T Consensus 191 ~t~-~vd~~~~~~l----~~~ip~~~~~vse--SGI~t~~d~~~~~~~~davLiG~~lm~~~d~~~~~~~L~~~~vKICG 263 (454)
T PRK09427 191 RDL-SIDLNRTREL----APLIPADVIVISE--SGIYTHAQVRELSPFANGFLIGSSLMAEDDLELAVRKLILGENKVCG 263 (454)
T ss_pred ccc-eECHHHHHHH----HhhCCCCcEEEEe--CCCCCHHHHHHHHhcCCEEEECHHHcCCCCHHHHHHHHhccccccCC
Confidence 221 1333332222 3455665555542 12333333444566899998887655432 3
Q ss_pred CChhHHHHHHHHcC
Q 020848 278 NDFDADQLMFKVLG 291 (320)
Q Consensus 278 ~~~~~~~~~i~~~G 291 (320)
.+-.++++++.++|
T Consensus 264 it~~eda~~a~~~G 277 (454)
T PRK09427 264 LTRPQDAKAAYDAG 277 (454)
T ss_pred CCCHHHHHHHHhCC
Confidence 45566667777766
No 445
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.55 E-value=15 Score=35.47 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCC-CCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLG-MLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g-~l~~e~l~~L~~aGld~v~ 133 (320)
.++++..+.++.+.+.|++.+.+... .| .-....+.++++++ .+-.+.+-.| .++.+.++.|.++|.|.|.
T Consensus 238 v~~~~~~~ra~~Lv~aGvd~i~vd~a----~g---~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 238 INTRDYAERVPALVEAGADVLCIDSS----EG---YSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred cChhhHHHHHHHHHHhCCCeEeecCc----cc---ccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 35567778888899999998887421 12 33456788888885 3322333334 4899999999999999998
Q ss_pred cCcccc
Q 020848 134 HNLDTS 139 (320)
Q Consensus 134 i~let~ 139 (320)
+++-..
T Consensus 311 vg~g~G 316 (502)
T PRK07107 311 VGIGGG 316 (502)
T ss_pred ECCCCC
Confidence 876554
No 446
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=74.52 E-value=21 Score=31.77 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=57.3
Q ss_pred CCHHH----HHHHHHHHHHcCCCE-EEEec-ccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDA----VMQAAQKAKEAGSTR-FCMGA-AWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~ee----i~~~~~~~~~~g~~~-i~l~~-g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
++.+| +.+.++.+++.|..- ..+.. .+.+..+ ....+.+.++++.+.+.|.. +.-|.|.+++..+.+|.+
T Consensus 113 ~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~ 191 (287)
T PRK05692 113 CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG-EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLE 191 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCC-CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHH
Confidence 45555 444445555666542 11221 1112222 23567777888777766654 345677777776665544
Q ss_pred hc---cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 127 AG---LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 127 aG---ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.= ++.+.+++ +...++-.-+.+.-.+.++|.+.--..+-|+|+
T Consensus 192 ~l~~~~~~~~i~~----------H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 192 AVLAEFPAERLAG----------HFHDTYGQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred HHHHhCCCCeEEE----------EecCCCCcHHHHHHHHHHhCCCEEEEEccccCC
Confidence 31 22122222 223344344555556667787744444666655
No 447
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=74.51 E-value=67 Score=29.11 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCEEEEecccCC-CCCCchhH-----HHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNF-----NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~-~~ge~~~~-----~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.++...+.|++-+.+...+-. ..-.|..+ +.+.++++.++.. ..+.-..|. ....++.+.+.|+|.+++.
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~-~~ilH~cG~-~~~~l~~~~~~g~d~~~~d 260 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL-PTILHICGD-LTSILEEMADCGFDGISID 260 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC-CcEEEECCC-chHHHHHHHhcCCCeeccC
Confidence 33444556779988877543211 11113223 3344455555532 223223343 3567899999999987654
No 448
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=74.34 E-value=16 Score=33.32 Aligned_cols=87 Identities=8% Similarity=0.022 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
.+.|+.++.++.+.+.|++.+.++.|...... -....+.++.+|+ .++++..+.+. +.+.++++.+.| +|.|.
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i-~~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGY-DAESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEE
Confidence 57788888888888888888887554321111 1233445555553 46777666555 477777777765 88888
Q ss_pred cCcccc--HHHHhhhC
Q 020848 134 HNLDTS--REFYSKII 147 (320)
Q Consensus 134 i~let~--~~~~~~i~ 147 (320)
++=... |++.+++.
T Consensus 313 ~gR~~ladP~~~~k~~ 328 (338)
T cd02933 313 FGRPFIANPDLVERLK 328 (338)
T ss_pred eCHhhhhCcCHHHHHh
Confidence 863333 34444443
No 449
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=74.23 E-value=65 Score=28.79 Aligned_cols=129 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchh-------HHHHHHHHHHhh-hcCceEEEeCCC---CCHHHHHHHH
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTN-------FNQILEYVKDIR-DMGMEVCCTLGM---LEKHQAIELK 125 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~-------~~~l~~~i~~~k-~~~~~i~~~~g~---l~~e~l~~L~ 125 (320)
+++++.+.++.+.+.|++.|-|--+.+.+.+.... .+.+.++++.++ ..++++.+-... -..+.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Q ss_pred HhccCeec----------cCcccc-HHH-------HhhhCCCCCHHHHHHHHHHHHHcC---Ce-eeeeEEEEeCCCHHH
Q 020848 126 KAGLTAYN----------HNLDTS-REF-------YSKIITTRSYDERLETLKHVREAG---IN-VCSGGIIGLGEAEED 183 (320)
Q Consensus 126 ~aGld~v~----------i~let~-~~~-------~~~i~~~~~~~~~l~~i~~a~~~G---i~-v~~~~i~Glget~ed 183 (320)
++|+|.|. +.+++. +.. +..+.....+...++.+..+++.- ++ +..+-|. +.+|
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~----~~~d 266 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE----SWED 266 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC----CHHH
Q ss_pred HHHHHH
Q 020848 184 RVGLLH 189 (320)
Q Consensus 184 ~~~~l~ 189 (320)
..+.+.
T Consensus 267 a~~~l~ 272 (299)
T cd02940 267 AAEFLL 272 (299)
T ss_pred HHHHHH
No 450
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=74.17 E-value=22 Score=31.57 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i 134 (320)
++||+.+. .+.|++.|.+- ....+++-+.++.+++ .++.+.++ |-++.+.++.+.+.|+|.+++
T Consensus 198 tleqa~ea----~~agaDiI~LD---------n~~~e~l~~av~~~~~~~~~~~leaS-GGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 198 TPKEAIAA----LRAQPDVLQLD---------KFSPQQATEIAQIAPSLAPHCTLSLA-GGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred CHHHHHHH----HHcCCCEEEEC---------CCCHHHHHHHHHHhhccCCCeEEEEE-CCCCHHHHHHHHhcCCCEEEE
Confidence 45554443 45788777662 1234556666665553 23445555 558999999999999999987
Q ss_pred C
Q 020848 135 N 135 (320)
Q Consensus 135 ~ 135 (320)
+
T Consensus 264 g 264 (284)
T PRK06096 264 S 264 (284)
T ss_pred C
Confidence 6
No 451
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=74.15 E-value=24 Score=30.47 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccC-CCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHh-ccCeeccC
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWR-DTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKA-GLTAYNHN 135 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~-~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~a-Gld~v~i~ 135 (320)
++.+.++.+.+.|+.+|.++.-.. .+... ..++-+.++.+.. .+++..+.|..+.+.++.|++. |+..+-++
T Consensus 148 ~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-~n~~l~~~l~~~~---~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG 221 (241)
T COG0106 148 ELEELAKRLEEVGLAHILYTDISRDGTLSG-PNVDLVKELAEAV---DIPVIASGGVSSLDDIKALKELSGVEGVIVG 221 (241)
T ss_pred CHHHHHHHHHhcCCCeEEEEecccccccCC-CCHHHHHHHHHHh---CcCEEEecCcCCHHHHHHHHhcCCCcEEEEe
Confidence 344455566778999998865322 12111 2444444444433 6888899999999999999999 78777665
No 452
>PRK12999 pyruvate carboxylase; Reviewed
Probab=74.08 E-value=31 Score=37.09 Aligned_cols=166 Identities=11% Similarity=0.054 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCce--EEEeC--CCCCHHHHHHHHHhccC
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGME--VCCTL--GMLEKHQAIELKKAGLT 130 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~--i~~~~--g~l~~e~l~~L~~aGld 130 (320)
.+++-+++.++.+.+.|+..|+|-. +.| -..-..+.++++.+| +.+++ +++++ |.-....+. -.++|+|
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikD----t~G-~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~la-A~~aGad 761 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKD----MAG-LLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLA-AAEAGVD 761 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC----ccC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHH-HHHhCCC
Confidence 5788889999999999999998842 222 123355666677766 33444 34443 433333443 4588999
Q ss_pred eeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCC--Ceeee---ee
Q 020848 131 AYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHP--ESVPI---NA 205 (320)
Q Consensus 131 ~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~--~~v~~---~~ 205 (320)
.|..++.+.-+ ....-+.+.++.+++ ..|+++++++ +...++.+.++.+++..... ..... ..
T Consensus 762 ~vD~av~glg~----~tgn~~le~vv~~L~---~~~~~t~idl-----~~l~~~s~~~~~~r~~y~~~~~~~~~~~~~v~ 829 (1146)
T PRK12999 762 IVDVAVASMSG----LTSQPSLNSIVAALE---GTERDTGLDL-----DAIRKLSPYWEAVRPYYAPFESGLKSPTTEVY 829 (1146)
T ss_pred EEEecchhhcC----CcCCHHHHHHHHHHH---hcCCCCCcCH-----HHHHHHHHHHHHHHhHhhccCCCCCCCCcCeE
Confidence 99888766511 111224555555554 3455433322 12233344444444322100 01111 12
Q ss_pred eeecCCCCCCCC-------CC-CCHHHHHHHHHHHHHhCCCc
Q 020848 206 LLAVKGTPLQDQ-------KP-VEIWEMIRMIATARIVMPKA 239 (320)
Q Consensus 206 ~~p~~gt~~~~~-------~~-~~~~e~~~~~a~~R~~~p~~ 239 (320)
...+||-.+.+. .. --.+++++.+...|..+.+.
T Consensus 830 ~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~ 871 (1146)
T PRK12999 830 LHEMPGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDI 871 (1146)
T ss_pred EecCCCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCC
Confidence 234555444321 11 12456777777778777653
No 453
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=74.05 E-value=20 Score=32.08 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCcc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLD 137 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~le 137 (320)
.||.++.++.+.+.|.+-+++-+ +...+++.++.+.+..-=+-..+..|....-.+++|.++|+.++.++..
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~--------~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~ 236 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEA--------MTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLS 236 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC--------CCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChH
Q ss_pred ccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 138 TSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 138 t~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
.....+..+ .+.++.+++.|
T Consensus 237 ~~~aa~~a~---------~~~~~~l~~~g 256 (292)
T PRK11320 237 AFRAMNKAA---------ENVYEAIRRDG 256 (292)
T ss_pred HHHHHHHHH---------HHHHHHHHHcC
No 454
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=74.01 E-value=34 Score=30.51 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHHhhh---cCceEEEeCCCCCHHH---HHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRD---MGMEVCCTLGMLEKHQ---AIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~~k~---~~~~i~~~~g~l~~e~---l~~L~~a 127 (320)
++.+.+.+.++.+.+.|++.+++.|.. ||- +..++-.++++...+ -.+++.+..|..+.+. .+...++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~Gst----GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~ 98 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGT----GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKA 98 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCC----cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHh
Confidence 889999999999999999999885532 332 344555555554442 2355555545434444 4445667
Q ss_pred ccCeeccC
Q 020848 128 GLTAYNHN 135 (320)
Q Consensus 128 Gld~v~i~ 135 (320)
|+|.+.+.
T Consensus 99 Gadav~~~ 106 (296)
T TIGR03249 99 GADGYLLL 106 (296)
T ss_pred CCCEEEEC
Confidence 99987663
No 455
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=73.96 E-value=11 Score=33.96 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHh-ccCeecc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKA-GLTAYNH 134 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~a-Gld~v~i 134 (320)
+.++.++.++.+.+.|+..+.+-+ +... +...-+--++.++.++ ...+++..|.+..+.+.++++.+. |+|.|.+
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~--Rt~~-q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHG--RTRK-QRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEEC--S-TT-CCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred chhHHHHHHHHhhhcccceEEEec--Cchh-hcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEE
Confidence 456777788888888888887754 1110 1000022334444555 345788888888888887776555 8998888
Q ss_pred Cc
Q 020848 135 NL 136 (320)
Q Consensus 135 ~l 136 (320)
+=
T Consensus 213 gR 214 (309)
T PF01207_consen 213 GR 214 (309)
T ss_dssp SH
T ss_pred ch
Confidence 73
No 456
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=73.93 E-value=21 Score=31.78 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.||+.+. .+.|++.+.+- ....+++-+.++.+++ .+.+.++ |-++.+.++...+.|+|.|+.+-
T Consensus 206 tleea~~a----~~agaDiImLD---------nmspe~l~~av~~~~~-~~~leaS-GGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 206 SLAAAEEA----AAAGADIIMLD---------NMSLEQIEQAITLIAG-RSRIECS-GNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CHHHHHHH----HHcCCCEEEEC---------CCCHHHHHHHHHHhcC-ceEEEEE-CCCCHHHHHHHHhcCCCEEEeCc
Confidence 44554443 44677776552 1234566666665553 2334444 55899999999999999999873
No 457
>PRK04326 methionine synthase; Provisional
Probab=73.92 E-value=65 Score=29.15 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEE--EeCCCCCHHHHHHHHHhccCeeccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVC--CTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~--~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+-+.+.++.+.+.|++.+.|-. +.....+..++...+.++.+- ..+..+. +.-|. ..+.++.|.++|+|.+++.
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidE--P~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~-~~~~~~~l~~~~vd~i~~d 237 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDE--PALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGD-YSRIAPYILEFPVDQFDLE 237 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecC--chhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCC-cHHHHHHHHhCCCCEEEEE
Confidence 3344445566778997666632 111112333345555555544 2344432 22254 4567899999999998886
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHc--CCeeeeeEEEEe---CCCHHHHHHHHHHHhc
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREA--GINVCSGGIIGL---GEAEEDRVGLLHTLAT 193 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~--Gi~v~~~~i~Gl---get~ed~~~~l~~l~~ 193 (320)
.... .+ +.++.+++. |-.+..+++-+. -++.+++.+.++.+.+
T Consensus 238 ~~~~-----------~~----~~l~~~~~~~~~~~l~~Gvv~~~~~~~~~~e~v~~~v~~~~~ 285 (330)
T PRK04326 238 FANG-----------NY----KLLDLLKEYGFDKELGLGVIDVHSARVESVEEIKEAIKKGLE 285 (330)
T ss_pred eCCC-----------Cc----hhHHHhhccCCCCeEEeEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 5221 11 233445554 434666665543 3688888888877766
No 458
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.87 E-value=54 Score=27.76 Aligned_cols=160 Identities=14% Similarity=0.071 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeecc
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNH 134 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i 134 (320)
.++++.++.++.+.+.|++-+-++- +. ++-++.|+.+++..-.+.+-.|. ++.++++...++|.+.+..
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl--~~--------~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--RT--------PAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC--------ccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 6899999999999999999887752 11 23445555555321134444454 7889999999999987654
Q ss_pred CccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCC
Q 020848 135 NLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPL 214 (320)
Q Consensus 135 ~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~ 214 (320)
. .-+. +.++.+++.++.. +.|. -|+.|+. .+.++| .+.+.++ | ...+
T Consensus 94 P-------------~~~~----~vi~~a~~~~i~~----iPG~-~TptEi~----~a~~~G--a~~vKlF---P--a~~~ 140 (212)
T PRK05718 94 P-------------GLTP----PLLKAAQEGPIPL----IPGV-STPSELM----LGMELG--LRTFKFF---P--AEAS 140 (212)
T ss_pred C-------------CCCH----HHHHHHHHcCCCE----eCCC-CCHHHHH----HHHHCC--CCEEEEc---c--chhc
Confidence 2 1122 5566777777654 2222 2555533 345677 5666662 2 2111
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeCC
Q 020848 215 QDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTGE 270 (320)
Q Consensus 215 ~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~ 270 (320)
. . ...+...+..+|+..+-.++ ++..+.-..-+.+|+..+..|.
T Consensus 141 g-----g----~~~lk~l~~p~p~~~~~ptG---GV~~~ni~~~l~ag~v~~vggs 184 (212)
T PRK05718 141 G-----G----VKMLKALAGPFPDVRFCPTG---GISPANYRDYLALPNVLCIGGS 184 (212)
T ss_pred c-----C----HHHHHHHhccCCCCeEEEeC---CCCHHHHHHHHhCCCEEEEECh
Confidence 1 1 13334445556764433333 3333433555677844444444
No 459
>PRK03906 mannonate dehydratase; Provisional
Probab=73.81 E-value=9.1 Score=35.62 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=40.6
Q ss_pred CCC-CCHHHHHHHHHh----ccCeeccCccccHHHHhhhCC-C----CCHHHHHHHHHHHHHcCCe-eeeeEEEEeCCCH
Q 020848 113 LGM-LEKHQAIELKKA----GLTAYNHNLDTSREFYSKIIT-T----RSYDERLETLKHVREAGIN-VCSGGIIGLGEAE 181 (320)
Q Consensus 113 ~g~-l~~e~l~~L~~a----Gld~v~i~let~~~~~~~i~~-~----~~~~~~l~~i~~a~~~Gi~-v~~~~i~Glget~ 181 (320)
+|. .+.+.+.++++. |+..-. +|+.+ +++.|.. . .-.+.+.+.|+.+.+.||+ ++.+++.-+..+.
T Consensus 36 ~g~~W~~~~i~~~~~~ie~~Gl~~~v--vEs~p-v~~~Ik~g~~~rd~~ie~y~~sirnlg~~GI~~icYnfmpv~dwtr 112 (385)
T PRK03906 36 VGEVWPVEEILARKAEIEAAGLEWSV--VESVP-VHEDIKTGTPNRDRYIENYKQTLRNLAAAGIKVVCYNFMPVFDWTR 112 (385)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEE--EeCCC-ccHHHHcCCCCHHHHHHHHHHHHHHHHhcCCcEEEecCcccccccC
Confidence 343 677777777664 543211 45552 1223322 2 2457778888889999999 7778766444444
Q ss_pred HHH
Q 020848 182 EDR 184 (320)
Q Consensus 182 ed~ 184 (320)
.++
T Consensus 113 t~l 115 (385)
T PRK03906 113 TDL 115 (385)
T ss_pred ccc
Confidence 443
No 460
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=73.72 E-value=75 Score=29.33 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCHHHHH----HHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVM----QAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~----~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.++++ +.++.+++.|. .+.++. ...+ ....+++.++++.+.+.|.. +.-|.|.++++.+.++.+.=
T Consensus 106 ~s~~e~l~~~~~~i~~ak~~g~-~v~~~~---ed~~-r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 106 KDRAWVLERLARLVSFARDRGL-FVSVGG---EDAS-RADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEee---cCCC-CCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHH
Confidence 4556655 44555666775 455432 1111 24568888888888776644 45678988888877665441
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.+. +.+++ +...++.--+.+.-.+.++|.+.--..+.|+|+
T Consensus 181 ~~~~~v~l~~----------H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe 223 (365)
T TIGR02660 181 RQAVDLPLEM----------HAHNDLGMATANTLAAVRAGATHVNTTVNGLGE 223 (365)
T ss_pred HHhcCCeEEE----------EecCCCChHHHHHHHHHHhCCCEEEEEeecccc
Confidence 122 22222 334455555666667778898855556778875
No 461
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=73.58 E-value=23 Score=31.47 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=69.8
Q ss_pred CCHHHHHHHH----HHHHHcCCCEEEEeccc--CCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHH
Q 020848 56 MTKDAVMQAA----QKAKEAGSTRFCMGAAW--RDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~----~~~~~~g~~~i~l~~g~--~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~ 126 (320)
++.++.++.+ +.+++.|. .+.+.-.+ .+. ....+++.++++.+.+.|.. +.-|.|.+++..+.+|.+
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~---r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~ 183 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGM---RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYIS 183 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCC---cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHH
Confidence 4566665544 44555675 34443221 111 13457888888888877654 456788888888776654
Q ss_pred hc---cCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC--HHHHHHHHHHH
Q 020848 127 AG---LTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA--EEDRVGLLHTL 191 (320)
Q Consensus 127 aG---ld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget--~ed~~~~l~~l 191 (320)
.= +..+.+++ +...++..-+.+.-.+.++|...--..+.|+|+- .-.+++++..+
T Consensus 184 ~l~~~~~~~~i~~----------H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 184 DMVKRYPNLHFDF----------HAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred HHHhhCCCCeEEE----------EeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHH
Confidence 41 22222322 3344566667777778888988555557778652 12344444444
No 462
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=73.52 E-value=32 Score=30.17 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 91 NFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
....+.+.++.+|+. +.++.+--|.-++++++.+. .|.|.+-++
T Consensus 182 ~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 182 LPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp CHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred chHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 456788899998854 68888888999999999999 889999887
No 463
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=73.51 E-value=62 Score=28.24 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 60 AVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 60 ei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.++.++.+.+.|++.++++.-...-.+.... .++++.+. ..++++.+..|.-+.+.++++.++|++.+.++-
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n----~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs 104 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPN----YELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINT 104 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCccc----HHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEECh
Confidence 33445566677899999886432221122223 33444443 346788888899999999999999999988874
No 464
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=73.50 E-value=34 Score=29.40 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhH-HHHHHHHHHhhhcCceEEEeCCCCCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNF-NQILEYVKDIRDMGMEVCCTLGMLEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~-~~l~~~i~~~k~~~~~i~~~~g~l~~e~l~~L~~aGld~v~ 133 (320)
++.+++......+.+ +|.+-|++-.|. +..+ .. +.+.+..+.+ .+..+..-.|..+.++++.+.++|.|.|-
T Consensus 136 ~~~~~iaa~~alA~~~~g~~~iYLEaGS-Ga~~---~v~~~v~~~~~~~--~~~~LivGGGIrs~e~A~~~~~aGAD~IV 209 (230)
T PF01884_consen 136 LDKPEIAAAAALAAEYLGMPIIYLEAGS-GAYG---PVPEEVIAAVKKL--SDIPLIVGGGIRSPEQAREMAEAGADTIV 209 (230)
T ss_dssp -SHHHHHHHHHHHHHHTT-SEEEEE--T-TSSS----HHHHHHHHHHHS--SSSEEEEESS--SHHHHHHHHCTTSSEEE
T ss_pred CCcHHHHHHHHHHHHHhCCCEEEEEeCC-CCCC---CccHHHHHHHHhc--CCccEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 567788777765555 699999995432 1122 22 3333332222 36778888899999999999999999998
Q ss_pred cC
Q 020848 134 HN 135 (320)
Q Consensus 134 i~ 135 (320)
++
T Consensus 210 vG 211 (230)
T PF01884_consen 210 VG 211 (230)
T ss_dssp ES
T ss_pred EC
Confidence 86
No 465
>PRK08185 hypothetical protein; Provisional
Probab=73.49 E-value=67 Score=28.59 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+.+-|.-.+.+...+. ..+ +..+++.+. +..+++.++..- .+.+.++...++|+++|.
T Consensus 21 ~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~---~~~-~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM 96 (283)
T PRK08185 21 ADSCFLRAVVEEAEANNAPAIIAIHPNELDFL---GDN-FFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVM 96 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhc---cHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 57888888888888888766554332221111 122 556665544 556776665432 578899999999999887
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEEEEeCCC----------HHHHHHHHHHHhcCCCCCCee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA----------EEDRVGLLHTLATLPTHPESV 201 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i~Glget----------~ed~~~~l~~l~~l~~~~~~v 201 (320)
+.-...+. ..+.+...+..+.++..|+.+. ++. +|..+. .-+..+..++++..| ++.+
T Consensus 97 ~D~S~l~~-------eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~~~Tg--vD~L 166 (283)
T PRK08185 97 IDGSLLPY-------EENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFVSRTG--VDTL 166 (283)
T ss_pred EeCCCCCH-------HHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHHHhhC--CCEE
Confidence 75433210 1123334566777788888754 443 332111 114455567777777 5555
Q ss_pred ee-----eeeeecCCCCCCCCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceE
Q 020848 202 PI-----NALLAVKGTPLQDQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSI 266 (320)
Q Consensus 202 ~~-----~~~~p~~gt~~~~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~ 266 (320)
.+ ....+.. ..+.++.+. ++.+ +...+-+.+-..+ .++..+.-..++..|++.+
T Consensus 167 AvaiGt~HG~y~~~-----~kp~L~~e~-l~~I---~~~~~iPLVlHGg--sg~~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 167 AVAIGTAHGIYPKD-----KKPELQMDL-LKEI---NERVDIPLVLHGG--SANPDAEIAESVQLGVGKI 225 (283)
T ss_pred EeccCcccCCcCCC-----CCCCcCHHH-HHHH---HHhhCCCEEEECC--CCCCHHHHHHHHHCCCeEE
Confidence 44 2222210 023344333 2222 2222322322221 2334444466888998887
No 466
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=73.37 E-value=67 Score=28.58 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+... -...+.+..+++.+. +..+++.++..- .+.+.+.+-.++|.++|.
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~---~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFS---YAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVM 102 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHh---hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEE
Confidence 567888888888888887555433211111 123455677666655 557777666442 578889999999999887
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeee--eeEEEEeCCC---------HHHHHHHHHHHhcCCCCCCeee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVC--SGGIIGLGEA---------EEDRVGLLHTLATLPTHPESVP 202 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~i~Glget---------~ed~~~~l~~l~~l~~~~~~v~ 202 (320)
++-...| . ..+.+...+..+.++..|+.+. ++-+-|..+. .-+-.+..+|+++.| ++.+.
T Consensus 103 iDgS~lp-~------eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tg--vD~LA 173 (284)
T PRK12737 103 IDGSHLS-F------EENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTG--IDSLA 173 (284)
T ss_pred ecCCCCC-H------HHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhC--CCEEe
Confidence 7543321 0 1234555778888999998754 4445444211 113466777888887 55444
Q ss_pred eeeeeecCCCCCC---CCCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEe
Q 020848 203 INALLAVKGTPLQ---DQKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIF 267 (320)
Q Consensus 203 ~~~~~p~~gt~~~---~~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~ 267 (320)
+.. ||--. ..|.++.+.+.++-+ ..+-++ -+-+| .++..+.-..++..|++.+=
T Consensus 174 vai-----Gt~HG~y~~~p~Ld~~~L~~I~~----~~~iPL-VlHGg-SG~~~e~~~kai~~Gi~KiN 230 (284)
T PRK12737 174 VAI-----GTAHGLYKGEPKLDFERLAEIRE----KVSIPL-VLHGA-SGVPDEDVKKAISLGICKVN 230 (284)
T ss_pred ecc-----CccccccCCCCcCCHHHHHHHHH----HhCCCE-EEeCC-CCCCHHHHHHHHHCCCeEEE
Confidence 322 33211 123455554333222 222222 22111 23444444667889998873
No 467
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=73.25 E-value=41 Score=28.63 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeEEE
Q 020848 151 SYDERLETLKHVREAGINVCSGGII 175 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~i~ 175 (320)
.+...++..+.+.+.|+++.++.++
T Consensus 181 Gi~~~~~i~~~a~~~gi~~~~~~~~ 205 (229)
T cd00308 181 GLTESRRAADLAEAFGIRVMVHGTL 205 (229)
T ss_pred CHHHHHHHHHHHHHcCCEEeecCCC
Confidence 5677788888888888877666544
No 468
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=73.16 E-value=75 Score=29.03 Aligned_cols=178 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhh--cCceEEEeCCCCCHHHHHHHHHhccCeeccCcccc
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRD--MGMEVCCTLGMLEKHQAIELKKAGLTAYNHNLDTS 139 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~--~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~let~ 139 (320)
.+.++.+.+.|+.-+-+.+-..-+.| .++ .++.+++ .++++....-.+++-++.+-+.+|.|.|.+-...+
T Consensus 142 ~~iA~~Ye~~GA~aISVLTd~~~F~G---s~e----~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL 214 (338)
T PLN02460 142 VEIAQAYEKGGAACLSVLTDEKYFQG---SFE----NLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVL 214 (338)
T ss_pred HHHHHHHHhCCCcEEEEecCcCcCCC---CHH----HHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhC
Confidence 34455566788888877653333333 233 3345553 46777666667899999999999999988754332
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcC-CCCCCeeeeeeeeecCCCCCCCCC
Q 020848 140 REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATL-PTHPESVPINALLAVKGTPLQDQK 218 (320)
Q Consensus 140 ~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l-~~~~~~v~~~~~~p~~gt~~~~~~ 218 (320)
+.++..+.++.+++.|+.+ ++- -.+.+|+...+. + | +..|+++.-. +...
T Consensus 215 -----------~~~~L~~l~~~A~~LGme~----LVE-VH~~~ElerAl~----~~g--a~iIGINNRd------L~Tf- 265 (338)
T PLN02460 215 -----------PDLDIKYMLKICKSLGMAA----LIE-VHDEREMDRVLG----IEG--VELIGINNRS------LETF- 265 (338)
T ss_pred -----------CHHHHHHHHHHHHHcCCeE----EEE-eCCHHHHHHHHh----cCC--CCEEEEeCCC------CCcc-
Confidence 2234456678888889875 331 246677665543 3 4 5566666532 2211
Q ss_pred CCCHHHHHHHHHHHH-HhC-CCceeecCCcccccC-hhHHHHHHHcCCceEeeCCccccCCC
Q 020848 219 PVEIWEMIRMIATAR-IVM-PKAMVRLSAGRVRFS-MPEQALCFLAGANSIFTGEKLLTTPN 277 (320)
Q Consensus 219 ~~~~~e~~~~~a~~R-~~~-p~~~i~~~~g~~~~~-~~~~~~~~~~Gan~~~~~~~~~~~~~ 277 (320)
..+.+...++....+ ..+ |...+.++- .++. +..-.....+|++.+.+|+.++.+..
T Consensus 266 ~vDl~~t~~L~~~~~~~~i~~~~~~~VsE--SGI~t~~Dv~~l~~~GadAvLVGEsLMr~~d 325 (338)
T PLN02460 266 EVDISNTKKLLEGERGEQIREKGIIVVGE--SGLFTPDDVAYVQNAGVKAVLVGESLVKQDD 325 (338)
T ss_pred eECHHHHHHHhhhccccccCCCCeEEEEC--CCCCCHHHHHHHHHCCCCEEEECHHHhCCCC
Confidence 133333333322111 123 333444442 1222 22223455689999999987765443
No 469
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=73.03 E-value=24 Score=31.39 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCHH-HHHHHHHhccCeeccCc
Q 020848 58 KDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEKH-QAIELKKAGLTAYNHNL 136 (320)
Q Consensus 58 ~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~e-~l~~L~~aGld~v~i~l 136 (320)
.|+.++.++.+.+.|.+-+++-+ +...+++..+.+.+. ..+-+....+..++. .+++|.++|++++.++.
T Consensus 160 ~deAI~Ra~ay~~AGAD~vfi~g--------~~~~e~i~~~~~~i~-~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 160 LDAAIERAKAYVEAGADMIFPEA--------LTSLEEFRQFAKAVK-VPLLANMTEFGKTPLFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCC--------CCCHHHHHHHHHhcC-CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEch
Q ss_pred cccHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 020848 137 DTSREFYSKIITTRSYDERLETLKHVREAG 166 (320)
Q Consensus 137 et~~~~~~~i~~~~~~~~~l~~i~~a~~~G 166 (320)
......++.+ .+.++.+++.|
T Consensus 231 ~~~~aa~~a~---------~~~~~~l~~~g 251 (285)
T TIGR02317 231 TAFRAMNKAA---------EAVYNEIKEHG 251 (285)
T ss_pred HHHHHHHHHH---------HHHHHHHHHcC
No 470
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=72.99 E-value=23 Score=30.73 Aligned_cols=125 Identities=26% Similarity=0.259 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCe-
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMG-AAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTA- 131 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~-~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~- 131 (320)
..+++++.++.+++.|.+-.+.. ..... ....+++.++++.+.+.|.. +.-+.|.++++.+..+.+.=...
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhC
Confidence 46777788888888887533222 21110 14567788888888877654 34567888888877664441111
Q ss_pred --eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC--HHHHHHHHHHHhcCC
Q 020848 132 --YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA--EEDRVGLLHTLATLP 195 (320)
Q Consensus 132 --v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget--~ed~~~~l~~l~~l~ 195 (320)
+.+++ +...++.--+.+.-.|.++|...-=..+.|+|+- .-.+.+++..+...+
T Consensus 189 ~~~~~~~----------H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~ 246 (265)
T cd03174 189 PDVPLGL----------HTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLG 246 (265)
T ss_pred CCCeEEE----------EeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcC
Confidence 33333 3334444445666667788987544456777642 123455555555543
No 471
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=72.92 E-value=53 Score=27.21 Aligned_cols=182 Identities=17% Similarity=0.198 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-Cce--E-EEeCCCCCHHHHHHHHHhccCe
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GME--V-CCTLGMLEKHQAIELKKAGLTA 131 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~--i-~~~~g~l~~e~l~~L~~aGld~ 131 (320)
+++..+.+.++.+.+.|++.+.+.-.+.... + ..+.-.+.++.+++. +.. + ...+.. .+.++.+.++|+|.
T Consensus 9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~--~-~~~~~~~~~~~i~~~~~~~~~v~l~~~d~--~~~~~~~~~~g~dg 83 (211)
T cd00429 9 ADFANLGEELKRLEEAGADWIHIDVMDGHFV--P-NLTFGPPVVKALRKHTDLPLDVHLMVENP--ERYIEAFAKAGADI 83 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCC--C-ccccCHHHHHHHHhhCCCcEEEEeeeCCH--HHHHHHHHHcCCCE
Confidence 5677788888888899999988742211110 1 011112444444422 122 2 112211 45688889999999
Q ss_pred eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCC
Q 020848 132 YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKG 211 (320)
Q Consensus 132 v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~g 211 (320)
+.+..... +...+.++.+++.|+.+... +......+.+.+.. .. ++.+.+..+.| |
T Consensus 84 v~vh~~~~-------------~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~----~~---~d~i~~~~~~~--g 139 (211)
T cd00429 84 ITFHAEAT-------------DHLHRTIQLIKELGMKAGVA--LNPGTPVEVLEPYL----DE---VDLVLVMSVNP--G 139 (211)
T ss_pred EEECccch-------------hhHHHHHHHHHHCCCeEEEE--ecCCCCHHHHHHHH----hh---CCEEEEEEECC--C
Confidence 86643211 22345577777777665443 22222222222221 11 34555555433 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC----CceeecCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 212 TPLQDQKPVEIWEMIRMIATARIVMP----KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 212 t~~~~~~~~~~~e~~~~~a~~R~~~p----~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
+.-.. .+. ..+..+...|.+.+ +..+-+.+ ++.++.-......|++.++.|..+.
T Consensus 140 ~tg~~---~~~-~~~~~i~~~~~~~~~~~~~~pi~v~G---GI~~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 140 FGGQK---FIP-EVLEKIRKLRELIPENNLNLLIEVDG---GINLETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred CCCcc---cCH-HHHHHHHHHHHHHHhcCCCeEEEEEC---CCCHHHHHHHHHcCCCEEEECHHHh
Confidence 22111 112 22233333333332 22222222 4444444556678999998886444
No 472
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=72.89 E-value=31 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=34.5
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhh----cCce--EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MGME--VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~----~~~~--i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.|.+-+..++.+|.+ ..+..++-++.+++ .++. +.+. |-++.+.+..+.++|+|.+-.+
T Consensus 131 vD~VLvMsV~PGf~GQ~-fi~~~l~KI~~lr~~~~~~~~~~~IeVD-GGI~~~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 131 LDKITVMTVDPGFAGQP-FIPEMLDKIAELKALRERNGLEYLIEVD-GSCNQKTYEKLMEAGADVFIVG 197 (229)
T ss_pred cCEEEEEEEcCCCcchh-ccHHHHHHHHHHHHHHHhcCCCeEEEEE-CCCCHHHHHHHHHcCCCEEEEC
Confidence 34555545444444533 44555555555542 2333 4444 4467788888888888877554
No 473
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.88 E-value=43 Score=29.75 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHHhhh---cCceEEEeCCCC----CHHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRD---MGMEVCCTLGML----EKHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~~k~---~~~~i~~~~g~l----~~e~l~~L~~ 126 (320)
++.+.+.+.++.+.+.|++.+++.|+. ||- +..++-.++++.+.+ -.+++.+..+.. ..+.++..++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~----GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 94 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTT----GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEK 94 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcC----CccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHH
Confidence 889999999999999999999875431 331 334455555554432 235555554432 3445566677
Q ss_pred hccCeeccCc
Q 020848 127 AGLTAYNHNL 136 (320)
Q Consensus 127 aGld~v~i~l 136 (320)
+|+|.+.+..
T Consensus 95 ~G~d~v~~~p 104 (292)
T PRK03170 95 AGADGALVVT 104 (292)
T ss_pred cCCCEEEECC
Confidence 7999888753
No 474
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=72.83 E-value=25 Score=29.89 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCEEEEecccCC-CCCCchhHHHHHHHHHHhhh-cCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 62 MQAAQKAKEAGSTRFCMGAAWRD-TIGRKTNFNQILEYVKDIRD-MGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 62 ~~~~~~~~~~g~~~i~l~~g~~~-~~ge~~~~~~l~~~i~~~k~-~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
.+.++.+.+.|+..+.+.+-... +.. ... .++++.+++ .++++..+.|..+.+.++.+.+.|++.+.++
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~-g~~----~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLS-GPN----FELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccC-CCC----HHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 34455566789999887642111 111 112 455555553 4788888889999999999999999998875
No 475
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=72.79 E-value=81 Score=29.25 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhhhcCceEEEeCCC-CCHHHHHHHHHhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee
Q 020848 91 NFNQILEYVKDIRDMGMEVCCTLGM-LEKHQAIELKKAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINV 169 (320)
Q Consensus 91 ~~~~l~~~i~~~k~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 169 (320)
..+.+.++++.+++.++.+.+..+. -..+.++.+.++|+|.|.+.--+....| .....+|.++.+.+ ++.++++
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~--~sg~~~p~~l~~~i---~~~~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEH--VSTSGEPLNLKEFI---GELDVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhc--cCCCCCHHHHHHHH---HHCCCCE
Confidence 3455667777777655444333333 4568889999999999887543322222 11234565444433 4456654
Q ss_pred eeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCCCCC----CCCCCHHHHHHHHHHHHHhCCCc---eee
Q 020848 170 CSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTPLQD----QKPVEIWEMIRMIATARIVMPKA---MVR 242 (320)
Q Consensus 170 ~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~~~~----~~~~~~~e~~~~~a~~R~~~p~~---~i~ 242 (320)
+.|-..+.++..+.++ .| ++.|.+. ..|+.... ...+....+.+..+..+.++... +++
T Consensus 192 ----I~G~V~t~e~A~~~~~----aG--aDgV~~G----~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vp 257 (369)
T TIGR01304 192 ----IAGGVNDYTTALHLMR----TG--AAGVIVG----PGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVH 257 (369)
T ss_pred ----EEeCCCCHHHHHHHHH----cC--CCEEEEC----CCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 3344456666655553 56 5554411 11211111 11222223333333334343221 233
Q ss_pred -cCCcccccChhHHHHHHHcCCceEeeCCccc
Q 020848 243 -LSAGRVRFSMPEQALCFLAGANSIFTGEKLL 273 (320)
Q Consensus 243 -~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~~ 273 (320)
+..|-+.. +..-..++.+||+.++.|..+.
T Consensus 258 VIAdGGI~t-g~di~kAlAlGAdaV~iGt~~a 288 (369)
T TIGR01304 258 VIADGGIET-SGDLVKAIACGADAVVLGSPLA 288 (369)
T ss_pred EEEeCCCCC-HHHHHHHHHcCCCEeeeHHHHH
Confidence 22222222 2233678889999998876543
No 476
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=72.78 E-value=69 Score=28.48 Aligned_cols=191 Identities=15% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|.+...++.+.+.+..-|.-.+.+.. .-..++.+..+++.+. +.++++.++..- .+.+.+++-.++|.++|.
T Consensus 26 ~n~e~~~avi~AAe~~~sPvIl~~~~~~~---~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM 102 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNFIQIAPTNA---QLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVM 102 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECcHhHH---hhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEE
Confidence 46777778888877777655443221111 1123466676776655 557776555332 567788888899999888
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCee--eeeEEEEeCCC-------HHHHHHHHHHHhcCCCCCCeeeee
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINV--CSGGIIGLGEA-------EEDRVGLLHTLATLPTHPESVPIN 204 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v--~~~~i~Glget-------~ed~~~~l~~l~~l~~~~~~v~~~ 204 (320)
++-...+ . ..+.+...+..+.++..|+.+ .++.+-|..+. .-+..+..+|+.+.| ++.+.+.
T Consensus 103 ~DgS~l~-~------eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tg--vD~LAva 173 (283)
T PRK07998 103 IDGAALP-F------EENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTG--CDMLAVS 173 (283)
T ss_pred EeCCCCC-H------HHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhC--cCeeehh
Confidence 8432211 0 123445567888899999875 44545444211 124456678888888 5544332
Q ss_pred eeeecCCCCCCC--CCCCCHHHHHHHHHHHHHhCCCceeecCCcccccChhHHHHHHHcCCceEeeC
Q 020848 205 ALLAVKGTPLQD--QKPVEIWEMIRMIATARIVMPKAMVRLSAGRVRFSMPEQALCFLAGANSIFTG 269 (320)
Q Consensus 205 ~~~p~~gt~~~~--~~~~~~~e~~~~~a~~R~~~p~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~ 269 (320)
. ||--.. .|.++.+.+.+ +. ...+-+ +-+-+| .++..+.-..++..|++.+=.+
T Consensus 174 i-----Gt~HG~Y~~p~l~~~~l~~-I~---~~~~vP-LVlHGg-SG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 174 I-----GNVHGLEDIPRIDIPLLKR-IA---EVSPVP-LVIHGG-SGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred c-----cccccCCCCCCcCHHHHHH-HH---hhCCCC-EEEeCC-CCCCHHHHHHHHHcCCcEEEEC
Confidence 2 322111 13444443222 22 222222 222222 2344444467888999988444
No 477
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=72.20 E-value=49 Score=30.47 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeE
Q 020848 151 SYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
.+.+.++..+.+.+.|+++..+.
T Consensus 250 Git~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 250 GITPARKIADLASLYGVRTGWHG 272 (361)
T ss_pred CHHHHHHHHHHHHHcCCeeeccC
Confidence 46777788888888888776553
No 478
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=72.20 E-value=30 Score=29.47 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=37.9
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhhh----cC--ceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIRD----MG--MEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~----~~--~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+-+..++++|.+ ..+.-++.++.+++ .+ +.+.+- |-++.+.+..+.++|+|.+-++
T Consensus 129 ~D~vlvMtV~PGfgGq~-fi~~~lekI~~l~~~~~~~~~~~~I~vd-GGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 129 VDLILLMSVNPGFGGQS-FIPHTLDKLRAVRKMIDESGRDIRLEID-GGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCeEEEEEecCCCCCce-ecHhHHHHHHHHHHHHHhcCCCeeEEEE-CCCCHHHHHHHHHcCCCEEEEe
Confidence 45566555545555532 44455555555543 23 445554 5577999999999999988775
No 479
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=72.16 E-value=22 Score=30.71 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-----------------------ccCCCCCCchhHHHHHHHHHHhhhc-CceEEE
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGA-----------------------AWRDTIGRKTNFNQILEYVKDIRDM-GMEVCC 111 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~-----------------------g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~ 111 (320)
+++|++.+.++.+++.|++.+.+.. ....+++.....+.+.+.++.+|+. +.++.+
T Consensus 113 l~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~v 192 (242)
T cd04724 113 LPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAV 192 (242)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEE
Confidence 4667777777777777766555432 1111222211234555666666643 455666
Q ss_pred eCCCCCHHHHHHHHHhccCeeccC
Q 020848 112 TLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 112 ~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
--|.-+++.++.+.++ .|.+-++
T Consensus 193 ggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 193 GFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred EccCCCHHHHHHHHcc-CCEEEEC
Confidence 6666666677777776 6666665
No 480
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=72.10 E-value=59 Score=27.37 Aligned_cols=161 Identities=17% Similarity=0.159 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~ 133 (320)
.+.|++++.++.+.+.|++-+-+.- +. +...+ .++.++ +.+-.+.+-.|. ++.++++...++|.+.+.
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~--~~----~~~~~----~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv 88 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL--NS----PDPFD----SIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV 88 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CC----ccHHH----HHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence 5889999999999999999887753 11 22333 455554 333234444454 889999999999998876
Q ss_pred cCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCCHHHHHHHHHHHhcCCCCCCeeeeeeeeecCCCC
Q 020848 134 HNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALLAVKGTP 213 (320)
Q Consensus 134 i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~ed~~~~l~~l~~l~~~~~~v~~~~~~p~~gt~ 213 (320)
..... .+.++.++..|+.+. .| -.|.+|+.+. .+.| .+.+.++ | .
T Consensus 89 sp~~~-----------------~~v~~~~~~~~~~~~----~G-~~t~~E~~~A----~~~G--ad~vk~F---p--a-- 133 (206)
T PRK09140 89 TPNTD-----------------PEVIRRAVALGMVVM----PG-VATPTEAFAA----LRAG--AQALKLF---P--A-- 133 (206)
T ss_pred CCCCC-----------------HHHHHHHHHCCCcEE----cc-cCCHHHHHHH----HHcC--CCEEEEC---C--C--
Confidence 64211 234455666666543 33 3577775443 3466 6777752 2 1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CceeecCCcccccChhHHHHHHHcCCceEeeCCcc
Q 020848 214 LQDQKPVEIWEMIRMIATARIVMP-KAMVRLSAGRVRFSMPEQALCFLAGANSIFTGEKL 272 (320)
Q Consensus 214 ~~~~~~~~~~e~~~~~a~~R~~~p-~~~i~~~~g~~~~~~~~~~~~~~~Gan~~~~~~~~ 272 (320)
....++. +...+..+| +..+-..+ ++..+.-...+.+|++.+..+..+
T Consensus 134 ----~~~G~~~----l~~l~~~~~~~ipvvaiG---GI~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 134 ----SQLGPAG----IKALRAVLPPDVPVFAVG---GVTPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred ----CCCCHHH----HHHHHhhcCCCCeEEEEC---CCCHHHHHHHHHCCCeEEEEehHh
Confidence 1223332 333344454 22221122 344444466778999998666533
No 481
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=72.05 E-value=35 Score=32.56 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
++-.+.++.+.+.|++-|.+.... | .-..+.+.++.+++. ++.+.. .+..+.+..+.|.++|+|.|.+++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~----g---~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSH----G---HSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCC----C---cHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEEECC
Confidence 345566777888999988885421 2 225688888888854 455444 234899999999999999997665
Q ss_pred ccc-HHHHhhhCC-C-CCHHHHHHHHHHHHHcCCeeeeeEEE--EeCCCHHHHHHHHHHHhcCCCCCCeeeeeee
Q 020848 137 DTS-REFYSKIIT-T-RSYDERLETLKHVREAGINVCSGGII--GLGEAEEDRVGLLHTLATLPTHPESVPINAL 206 (320)
Q Consensus 137 et~-~~~~~~i~~-~-~~~~~~l~~i~~a~~~Gi~v~~~~i~--Glget~ed~~~~l~~l~~l~~~~~~v~~~~~ 206 (320)
-.. -..-+.... + ..+..+.+..+.+++.++++ +. |. .+..|+.+.+. +| .+.+-+..+
T Consensus 295 g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpv----iadGGi-~~~~di~kAla----~G--A~~V~~G~~ 358 (450)
T TIGR01302 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPV----IADGGI-RYSGDIVKALA----AG--ADAVMLGSL 358 (450)
T ss_pred CCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeE----EEeCCC-CCHHHHHHHHH----cC--CCEEEECch
Confidence 211 000001111 1 12334444555556666553 33 22 36666665553 45 455555443
No 482
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=72.05 E-value=45 Score=30.62 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHcCCeeeeeE
Q 020848 151 SYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 151 ~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
.+...++....+...|+++..+.
T Consensus 271 Git~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 271 GVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CHHHHHHHHHHHHHcCCeeccCc
Confidence 46677777888888888776653
No 483
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=72.04 E-value=78 Score=28.75 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=39.2
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhH-----HHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNF-----NQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~-----~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++...+.|+..+.+...+..... |..+ +.+.++++.+++. +..+....|- +...++.+++.|++.+++.
T Consensus 186 ~~~~~eaGad~i~i~d~~~~~ls-p~~f~ef~~p~~k~i~~~i~~~~~~~~ilh~cg~-~~~~~~~~~~~~~~~~s~d 261 (338)
T TIGR01464 186 LVEQVKAGAQAVQIFDSWAGALS-PEDFEEFVLPYLKKIIEEVKARLPNVPVILFAKG-AGHLLEELAETGADVVGLD 261 (338)
T ss_pred HHHHHHcCCCEEEEECCccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC-cHHHHHHHHhcCCCEEEeC
Confidence 33445678887766532212222 3333 4456667777754 4444333332 3467899999999888664
No 484
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=72.00 E-value=83 Score=29.05 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 59 DAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 59 eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+.+.+.++.+++.|. .+.++..+ . + ....+++.++++.+.+.|.. +.-|.|.++++.+.++.+.=.+.+.+.
T Consensus 112 ~~~~~~i~~ak~~G~-~v~~~~ed-a--~-r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~ 186 (363)
T TIGR02090 112 EKAVEAVEYAKEHGL-IVEFSAED-A--T-RTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP 186 (363)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEee-c--C-CCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCce
Confidence 333344555666775 34443211 1 1 23467778888777766544 445678888887777655422222211
Q ss_pred ccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 136 LDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 136 let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
+ .++...++.--+.+.-.+.++|...--..+.|+|+
T Consensus 187 l--------~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 187 I--------SVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred E--------EEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 1 11223344444555556667788755555777865
No 485
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=71.78 E-value=15 Score=31.82 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCceEEEeCCCCCH-HHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEK-HQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~i~~~~g~l~~-e~l~~L~~aGld~v~i~ 135 (320)
+.++.++.++.+.+.|.+-+++-+ |...+++..+.+. .+.++.+.+..-.. -..++|.++|++++.++
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~--------~~~~~~~~~~~~~---~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~ 226 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEG--------LKDPEEIRAFAEA---PDVPLNVNMTPGGNLLTVAELAELGVRRVSYG 226 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC--------CCCHHHHHHHHhc---CCCCEEEEecCCCCCCCHHHHHHCCCeEEEEC
Q ss_pred ccccHHHHhhh
Q 020848 136 LDTSREFYSKI 146 (320)
Q Consensus 136 let~~~~~~~i 146 (320)
.......+..+
T Consensus 227 ~~~~~~a~~a~ 237 (243)
T cd00377 227 LALLRAAAKAM 237 (243)
T ss_pred hHHHHHHHHHH
No 486
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=71.73 E-value=26 Score=32.19 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCC-Cc--hhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhc-c
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRD-TIG-RK--TNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAG-L 129 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~-~~g-e~--~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aG-l 129 (320)
.++++.++.++.+.+.|++.+.++.|+.. ... .+ .......+..+.+| ..++++..+.+..+.+.++.+.+.| +
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 57888888889888899988888655321 100 00 00112455666676 3577777777777888888888876 8
Q ss_pred CeeccCcccc--HHHHhhhCC
Q 020848 130 TAYNHNLDTS--REFYSKIIT 148 (320)
Q Consensus 130 d~v~i~let~--~~~~~~i~~ 148 (320)
|.|.++=-.. |++.+++..
T Consensus 301 D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 301 DMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred ChhHhhHHHHHCccHHHHHHh
Confidence 8888874443 455555443
No 487
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=71.65 E-value=24 Score=31.75 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=44.5
Q ss_pred HHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 65 AQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 65 ~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.+.+.|++.|+++|. ..+|.... ...+.++..++ ..++++....|..+.+.+.....+|.+.|.++
T Consensus 122 a~~a~~~GaD~Ivv~g~--eagGh~g~-~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 122 AKRMEKAGADAVIAEGM--ESGGHIGE-LTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHcCCCEEEEECc--ccCCCCCC-CcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 44556689999988762 11121000 01244555555 34688888889989888877778999999886
No 488
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=71.60 E-value=45 Score=30.19 Aligned_cols=110 Identities=15% Similarity=0.261 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhc-cCeec
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAG-LTAYN 133 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aG-ld~v~ 133 (320)
.+..+|.+.+.. .++..+.+++. | -.+....+.+|+.|+. +.++...++++.++++-.-| ++.|.
T Consensus 74 ~dl~eIi~~l~~---~~~~~islTTN-----G-----~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl 140 (322)
T COG2896 74 KDLDEIIARLAR---LGIRDLSLTTN-----G-----VLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVL 140 (322)
T ss_pred cCHHHHHHHHhh---cccceEEEecc-----h-----hhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHH
Confidence 455666655554 37888888642 2 2355666678888886 78888889999999887333 22232
Q ss_pred cCcccc-HHHHh------hhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeC
Q 020848 134 HNLDTS-REFYS------KIITTRSYDERLETLKHVREAGINVCSGGIIGLG 178 (320)
Q Consensus 134 i~let~-~~~~~------~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glg 178 (320)
=+++.. +.-+. -+.++-+-+++.+.++.+++.|+.+...-..-+|
T Consensus 141 ~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE~m~~g 192 (322)
T COG2896 141 EGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIELMPLG 192 (322)
T ss_pred HHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEEEeecC
Confidence 233333 22121 1123458899999999999999887655554454
No 489
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=71.50 E-value=54 Score=28.81 Aligned_cols=103 Identities=16% Similarity=0.118 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHHhhh-c--CceEEEeCCCC-C---HHHHHHHHH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRD-M--GMEVCCTLGML-E---KHQAIELKK 126 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~~k~-~--~~~i~~~~g~l-~---~e~l~~L~~ 126 (320)
++.+.+.+.++.+.+.|++.+++.|.. ||- +..++-.++++.+.+ . .+++.+..+.. + .+..+...+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~Gst----GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTT----GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC----cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 889999999999999999999875432 332 344566666665542 2 46665555543 3 344455677
Q ss_pred hccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHH-cCCeee
Q 020848 127 AGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVRE-AGINVC 170 (320)
Q Consensus 127 aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~-~Gi~v~ 170 (320)
+|+|.+.+..-.+ - ..+.+.+++-.+.+.+ .++++.
T Consensus 91 ~Gad~v~v~pP~y----~----~~~~~~~~~~~~~ia~~~~~pi~ 127 (281)
T cd00408 91 AGADGVLVVPPYY----N----KPSQEGIVAHFKAVADASDLPVI 127 (281)
T ss_pred cCCCEEEECCCcC----C----CCCHHHHHHHHHHHHhcCCCCEE
Confidence 7999888743221 1 1234555665555554 345543
No 490
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.49 E-value=37 Score=31.13 Aligned_cols=109 Identities=7% Similarity=-0.007 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHH-cCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce-EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 58 KDAVMQAAQKAKE-AGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME-VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 58 ~eei~~~~~~~~~-~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+++-++.++.+++ .|-..-...... .....++..++++.+.+.++. +.-....-+.+.+.+|++.. .+.+.
T Consensus 159 ~~~D~~~i~avr~~~g~~~~l~vDaN-----~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~--~~pia 231 (352)
T cd03325 159 VDAAVERVAALREAVGPDIDIGVDFH-----GRVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAART--TIPIA 231 (352)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECC-----CCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHHhC--CCCEE
Confidence 4444555666555 343221222221 123456677777777665654 22212223456677776652 12222
Q ss_pred c-c---ccHHHHhhhC------------CCCCHHHHHHHHHHHHHcCCeeeeeE
Q 020848 136 L-D---TSREFYSKII------------TTRSYDERLETLKHVREAGINVCSGG 173 (320)
Q Consensus 136 l-e---t~~~~~~~i~------------~~~~~~~~l~~i~~a~~~Gi~v~~~~ 173 (320)
. | +..+.++.+. +...+...++.++.+.+.|+++.++.
T Consensus 232 ~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 232 TGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred ecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 1 1 1112211111 12357777888888888888765554
No 491
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.37 E-value=21 Score=29.29 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHhccCeeccCcccc-HHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCCC---------------HHHH
Q 020848 121 AIELKKAGLTAYNHNLDTS-REFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGEA---------------EEDR 184 (320)
Q Consensus 121 l~~L~~aGld~v~i~let~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget---------------~ed~ 184 (320)
++.++++|++.|.+..... +.... .....+..+.+.+.|+.+........... .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHH
Q ss_pred HHHHHHHhcCCCCCCeeeeee
Q 020848 185 VGLLHTLATLPTHPESVPINA 205 (320)
Q Consensus 185 ~~~l~~l~~l~~~~~~v~~~~ 205 (320)
.+.++.++.+| +..+.+..
T Consensus 74 ~~~i~~a~~lg--~~~i~~~~ 92 (213)
T PF01261_consen 74 KKAIDLAKRLG--AKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHHT--BSEEEEEC
T ss_pred HHHHHHHHHhC--CCceeecC
No 492
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=71.27 E-value=45 Score=30.71 Aligned_cols=81 Identities=9% Similarity=0.085 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhhcCceE-EEeCCCCCHHHHHHHHHhccCeeccCc-cc---cHHHHhhhC------------CCCCH
Q 020848 90 TNFNQILEYVKDIRDMGMEV-CCTLGMLEKHQAIELKKAGLTAYNHNL-DT---SREFYSKII------------TTRSY 152 (320)
Q Consensus 90 ~~~~~l~~~i~~~k~~~~~i-~~~~g~l~~e~l~~L~~aGld~v~i~l-et---~~~~~~~i~------------~~~~~ 152 (320)
...++..++++.+.+.++.. .-....-+.+.++.|++.. .+.+.+ |+ ..+..+.+. +-..+
T Consensus 199 ~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~~~l~~~~--~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGi 276 (365)
T cd03318 199 WDESTAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRN--RVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGL 276 (365)
T ss_pred CCHHHHHHHHHHHHhcCcceeeCCCCcccHHHHHHHHhhc--CCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCH
Confidence 34566667777776666542 2111222456666776652 222221 11 112111111 12346
Q ss_pred HHHHHHHHHHHHcCCeeeee
Q 020848 153 DERLETLKHVREAGINVCSG 172 (320)
Q Consensus 153 ~~~l~~i~~a~~~Gi~v~~~ 172 (320)
...++.+..|++.|+++..+
T Consensus 277 t~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 277 RRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred HHHHHHHHHHHHcCCceeec
Confidence 67777777777777765433
No 493
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.25 E-value=28 Score=31.07 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=39.5
Q ss_pred HHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc--CceEEEeCCCCCHHHHHHHHHhccCeeccCc
Q 020848 68 AKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM--GMEVCCTLGMLEKHQAIELKKAGLTAYNHNL 136 (320)
Q Consensus 68 ~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~--~~~i~~~~g~l~~e~l~~L~~aGld~v~i~l 136 (320)
+.+.|++.+.+- ....+++.+.++.++.. .+.+.++ |-++.+.++.+.+.|+|.|+++-
T Consensus 215 al~~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaS-GGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 215 VLAEGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESS-GGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHcCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEE-CCCCHHHHHHHHhcCCCEEEeCh
Confidence 345777766552 12346666666665533 2334455 55899999999999999999873
No 494
>PRK14057 epimerase; Provisional
Probab=71.07 E-value=36 Score=29.71 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=36.9
Q ss_pred CCEEEEecccCCCCCCchhHHHHHHHHHHhh----hcCc--eEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 73 STRFCMGAAWRDTIGRKTNFNQILEYVKDIR----DMGM--EVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 73 ~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k----~~~~--~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
++.|.+-+..++.+|.+ ..+..++-|++++ +.++ .+.+. |-++.+.+..+.++|+|.+-.+
T Consensus 155 vD~VLvMtV~PGfgGQ~-Fi~~~l~KI~~lr~~~~~~~~~~~IeVD-GGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 155 VEVIQLLAVNPGYGSKM-RSSDLHERVAQLLCLLGDKREGKIIVID-GSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred CCEEEEEEECCCCCchh-ccHHHHHHHHHHHHHHHhcCCCceEEEE-CCCCHHHHHHHHHCCCCEEEEC
Confidence 55666655555555543 4455555555544 2243 34444 4478888888888888877665
No 495
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=70.82 E-value=76 Score=28.15 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCC-----chhHHHHHHHHHHhhhc-C--ceE--EEeCCC----CCH-HH
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGR-----KTNFNQILEYVKDIRDM-G--MEV--CCTLGM----LEK-HQ 120 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge-----~~~~~~l~~~i~~~k~~-~--~~i--~~~~g~----l~~-e~ 120 (320)
++.+++...+..+...|++.++..+|+.+..+. ...++.-.++++.+++. + +.+ ...+.. -+. ..
T Consensus 71 ~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d 150 (281)
T TIGR00677 71 MPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELD 150 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHH
Confidence 566788888888889999999888777654331 12345567777777642 2 332 223211 122 23
Q ss_pred HHHHH---HhccCeeccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEe
Q 020848 121 AIELK---KAGLTAYNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGL 177 (320)
Q Consensus 121 l~~L~---~aGld~v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Gl 177 (320)
++.|+ ++|.+.+ +++ .--+.+...+.++.+++.|+.+ -++.|+
T Consensus 151 ~~~L~~Ki~aGA~f~-iTQ-----------~~Fd~~~~~~f~~~~~~~gi~~--PIi~GI 196 (281)
T TIGR00677 151 LKYLKEKVDAGADFI-ITQ-----------LFYDVDNFLKFVNDCRAIGIDC--PIVPGI 196 (281)
T ss_pred HHHHHHHHHcCCCEe-ecc-----------ceecHHHHHHHHHHHHHcCCCC--CEEeec
Confidence 45553 4777743 221 0234555566677788877653 335555
No 496
>PRK09389 (R)-citramalate synthase; Provisional
Probab=70.65 E-value=1.1e+02 Score=29.70 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=58.2
Q ss_pred CCHHHHHHHHH----HHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhcCce---EEEeCCCCCHHHHHHHHHhc
Q 020848 56 MTKDAVMQAAQ----KAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGME---VCCTLGMLEKHQAIELKKAG 128 (320)
Q Consensus 56 ~s~eei~~~~~----~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~~~~---i~~~~g~l~~e~l~~L~~aG 128 (320)
++.+++++.+. .+++.|. .+.+... .. . ....+.+.++++.+.+.|.. +.-|.|.+++..+.++.+.=
T Consensus 107 ~s~~e~l~~~~~~v~~ak~~g~-~v~~~~e-d~--~-r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l 181 (488)
T PRK09389 107 KTREEVLETAVEAVEYAKDHGL-IVELSGE-DA--S-RADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRL 181 (488)
T ss_pred CCHHHHHHHHHHHHHHHHHCCC-EEEEEEe-eC--C-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHH
Confidence 56666665554 3344554 3444321 11 1 23456777777777665543 45677887777766664431
Q ss_pred cCe--eccCccccHHHHhhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEEeCC
Q 020848 129 LTA--YNHNLDTSREFYSKIITTRSYDERLETLKHVREAGINVCSGGIIGLGE 179 (320)
Q Consensus 129 ld~--v~i~let~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glge 179 (320)
.+. +.+++ +...++.--..+...+.++|...--..+.|+||
T Consensus 182 ~~~~~v~l~~----------H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE 224 (488)
T PRK09389 182 SELVKGPVSI----------HCHNDFGLAVANTLAALAAGADQVHVTINGIGE 224 (488)
T ss_pred HhhcCCeEEE----------EecCCccHHHHHHHHHHHcCCCEEEEEcccccc
Confidence 111 22222 333455555566666677887744445677765
No 497
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=70.65 E-value=26 Score=30.92 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCCchhHHHHHHHHHHhhhc-CceEEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 57 TKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDM-GMEVCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 57 s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~~~~~~l~~~i~~~k~~-~~~i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
+++|+.+. ...|++.+.+. +...+.+-++++.+++. .+++.+. |-++.+.+..+.++|+|.+.++
T Consensus 190 t~eea~~A----~~~gaD~I~ld---------~~~~e~l~~~v~~i~~~~~i~i~as-GGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 190 TLEEAEEA----LEAGADIIMLD---------NMSPEELKEAVKLLKGLPRVLLEAS-GGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CHHHHHHH----HHcCCCEEEEC---------CCCHHHHHHHHHHhccCCCeEEEEE-CCCCHHHHHHHHHcCCCEEEEc
Confidence 44444433 34677777663 22335555555555532 3455555 4589999999999999999875
No 498
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=70.61 E-value=21 Score=31.70 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHH-cCCCEEEEe-cccCCCCCCchhHHHHHHHHHHhh-hcCceEEEeCCC-CCHHHHHHHHHhccCeeccC
Q 020848 62 MQAAQKAKE-AGSTRFCMG-AAWRDTIGRKTNFNQILEYVKDIR-DMGMEVCCTLGM-LEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 62 ~~~~~~~~~-~g~~~i~l~-~g~~~~~ge~~~~~~l~~~i~~~k-~~~~~i~~~~g~-l~~e~l~~L~~aGld~v~i~ 135 (320)
.+++..+.+ .|++.+.++ |..++++.....+. ++.++.++ ..++++....|. ++++.++++.++|++.|+++
T Consensus 155 ~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~--~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 155 PDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLD--FERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINID 230 (282)
T ss_pred HHHHHHHHHHHCcCEEeeccCccccccCCCCccC--HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEEC
No 499
>PLN02433 uroporphyrinogen decarboxylase
Probab=70.43 E-value=87 Score=28.62 Aligned_cols=66 Identities=11% Similarity=0.160 Sum_probs=38.6
Q ss_pred HHHHcCCCEEEEecccCCCCCCchh-----HHHHHHHHHHhhhc--Cce-EEEeCCCCCHHHHHHHHHhccCeeccC
Q 020848 67 KAKEAGSTRFCMGAAWRDTIGRKTN-----FNQILEYVKDIRDM--GME-VCCTLGMLEKHQAIELKKAGLTAYNHN 135 (320)
Q Consensus 67 ~~~~~g~~~i~l~~g~~~~~ge~~~-----~~~l~~~i~~~k~~--~~~-i~~~~g~l~~e~l~~L~~aGld~v~i~ 135 (320)
...+.|+.-+.+...+..... |.. .+++.++++.+++. +.. +....|.. ..++.+++.|.+.++++
T Consensus 187 ~~ieaGa~~i~i~d~~~~~ls-p~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~--~~~~~~~~~~~~~i~~d 260 (345)
T PLN02433 187 YQIDAGAQVVQIFDSWAGHLS-PVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG--GLLERLAGTGVDVIGLD 260 (345)
T ss_pred HHHHcCCCEEEEecCccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH--HHHHHHHhcCCCEEEcC
Confidence 344578877766532222222 323 34456677777753 344 33345542 67999999999987764
No 500
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.42 E-value=49 Score=29.66 Aligned_cols=76 Identities=12% Similarity=0.029 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCc--hhHHHHHHHHHHhhh---cCceEEEeCCCCCHH---HHHHHHHh
Q 020848 56 MTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRK--TNFNQILEYVKDIRD---MGMEVCCTLGMLEKH---QAIELKKA 127 (320)
Q Consensus 56 ~s~eei~~~~~~~~~~g~~~i~l~~g~~~~~ge~--~~~~~l~~~i~~~k~---~~~~i~~~~g~l~~e---~l~~L~~a 127 (320)
++.+.+.+.++.+.+.|++.+++.|+. ||- +..++-.++++.+.+ -.+++.+..|.-+.+ .++...++
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~Gst----GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~ 100 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGT----GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERA 100 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCC----cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999885532 332 344555555555442 235555544443344 44555667
Q ss_pred ccCeeccC
Q 020848 128 GLTAYNHN 135 (320)
Q Consensus 128 Gld~v~i~ 135 (320)
|+|.+.+.
T Consensus 101 Gadav~~~ 108 (303)
T PRK03620 101 GADGILLL 108 (303)
T ss_pred CCCEEEEC
Confidence 99988663
Done!