BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020850
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2F6L|A Chain A, X-Ray Structure Of Chorismate Mutase From Mycobacterium
           Tuberculosis
 pdb|2F6L|B Chain B, X-Ray Structure Of Chorismate Mutase From Mycobacterium
           Tuberculosis
 pdb|2FP1|A Chain A, Secreted Chorismate Mutase From Mycobacterium Tuberculosis
 pdb|2FP1|B Chain B, Secreted Chorismate Mutase From Mycobacterium Tuberculosis
 pdb|2FP2|A Chain A, Secreted Chorismate Mutase From Mycobacterium Tuberculosis
 pdb|2FP2|B Chain B, Secreted Chorismate Mutase From Mycobacterium Tuberculosis
          Length = 166

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 244 AILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELW 292
           AI ++ F+    +P ++P EP  L      +DSLNN++      +S++W
Sbjct: 74  AIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRM------LSQIW 116


>pdb|2AO2|A Chain A, The 2.07 Angstrom Crystal Structure Of Mycobacterium
           Tuberculosis Chorismate Mutase Reveals Unexpected Gene
           Duplication And Suggests A Role In Host-Pathogen
           Interactions
 pdb|2AO2|B Chain B, The 2.07 Angstrom Crystal Structure Of Mycobacterium
           Tuberculosis Chorismate Mutase Reveals Unexpected Gene
           Duplication And Suggests A Role In Host-Pathogen
           Interactions
 pdb|2AO2|C Chain C, The 2.07 Angstrom Crystal Structure Of Mycobacterium
           Tuberculosis Chorismate Mutase Reveals Unexpected Gene
           Duplication And Suggests A Role In Host-Pathogen
           Interactions
          Length = 165

 Score = 27.7 bits (60), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 244 AILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELW 292
           AI ++ F+    +P ++P EP  L      +DSLNN++      +S++W
Sbjct: 73  AIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRM------LSQIW 115


>pdb|1H2A|S Chain S, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
          Length = 317

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 109 VHKAANPPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYH 157
           V +A   P R +V+YL        S++V R F P+ D +I    S  YH
Sbjct: 47  VARALMGPRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYH 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,042,872
Number of Sequences: 62578
Number of extensions: 346375
Number of successful extensions: 839
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 11
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)