Query 020850
Match_columns 320
No_of_seqs 38 out of 40
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13563 2_5_RNA_ligase2: 2'-5 97.9 1.8E-05 3.8E-10 65.3 4.5 123 156-297 26-150 (153)
2 PRK13679 hypothetical protein; 97.1 0.009 1.9E-07 52.1 12.2 121 118-257 3-125 (168)
3 PRK15124 2'-5' RNA ligase; Pro 96.8 0.0093 2E-07 52.4 9.5 123 117-255 5-133 (176)
4 TIGR02258 2_5_ligase 2'-5' RNA 96.4 0.037 7.9E-07 47.8 10.4 123 120-255 5-132 (179)
5 COG1514 LigT 2'-5' RNA ligase 95.9 0.075 1.6E-06 48.0 9.8 123 120-255 5-132 (180)
6 PF10469 AKAP7_NLS: AKAP7 2'5' 95.6 0.031 6.7E-07 50.1 6.2 133 117-255 2-152 (209)
7 PF02834 LigT_PEase: LigT like 93.4 0.4 8.7E-06 36.8 6.9 75 122-205 1-78 (87)
8 PF09749 HVSL: Uncharacterised 90.6 9.6 0.00021 35.4 13.9 152 99-258 23-194 (239)
9 PF08975 2H-phosphodiest: Doma 89.7 2.2 4.7E-05 36.8 8.1 88 120-210 16-118 (118)
10 PHA02574 57B hypothetical prot 85.6 2.9 6.2E-05 37.1 6.7 110 114-252 6-118 (149)
11 PF02834 LigT_PEase: LigT like 78.6 2.6 5.7E-05 32.2 3.4 64 221-291 11-74 (87)
12 PLN00108 unknown protein; Prov 70.8 21 0.00046 34.6 8.0 130 115-254 35-198 (257)
13 KOG1502 Flavonol reductase/cin 62.8 9.4 0.0002 38.1 4.0 133 159-303 81-237 (327)
14 PF05434 Tmemb_9: TMEM9; Inte 59.9 23 0.00051 31.9 5.6 17 24-40 62-78 (149)
15 PF07823 CPDase: Cyclic phosph 46.5 1.6E+02 0.0035 26.7 9.0 106 181-295 56-180 (196)
16 PF12321 DUF3634: Protein of u 32.8 91 0.002 26.7 4.8 56 173-237 42-97 (108)
17 COG5255 Uncharacterized protei 29.2 77 0.0017 30.5 4.1 123 145-283 72-211 (239)
18 COG3064 TolA Membrane protein 27.8 60 0.0013 33.0 3.3 46 189-241 325-375 (387)
19 PF08544 GHMP_kinases_C: GHMP 24.9 1.9E+02 0.0042 21.4 5.0 51 177-234 32-85 (85)
20 COG3617 Prophage antirepressor 23.2 91 0.002 28.5 3.4 53 248-307 33-87 (176)
21 COG0351 ThiD Hydroxymethylpyri 22.9 1.4E+02 0.0031 29.0 4.8 30 181-210 87-116 (263)
22 PRK09510 tolA cell envelope in 22.8 1.1E+02 0.0024 31.4 4.2 40 200-241 331-374 (387)
23 PRK00766 hypothetical protein; 21.3 1.1E+02 0.0025 28.3 3.6 38 200-238 73-128 (194)
24 PF08302 tRNA_lig_CPD: Fungal 21.2 4.5E+02 0.0097 25.2 7.7 101 155-279 115-228 (257)
25 PF09164 VitD-bind_III: Vitami 21.1 17 0.00036 28.9 -1.6 30 222-251 16-45 (68)
26 COG4542 PduX Protein involved 20.2 2E+02 0.0044 28.5 5.2 47 181-232 234-281 (293)
No 1
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=97.86 E-value=1.8e-05 Score=65.34 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=74.2
Q ss_pred ceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEeEEEEcCC-CcEEEEeeecCCCChHHHHHHHHhhCCC
Q 020850 156 YHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLDRVILTST-GVLLGCWQVISGTDPMTIRAKLRTALPN 234 (320)
Q Consensus 156 yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ldRVvltsS-GvLL~cwqv~~Gtep~~iR~~Lr~alP~ 234 (320)
.|+|++......+.. ++=.+++++++.+..|+++.++++-.-++ |-+| .+.+.+......|+++|.++++.
T Consensus 26 pHITL~~~~~~~~~~-------~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~vi-~l~~~~~~~L~~L~~~l~~~~~~ 97 (153)
T PF13563_consen 26 PHITLAFPFDIDDSL-------DELVEALARLAAGFPPFELRLDGFGSFPGKGRVI-FLNVEPSPELEALHRALREALRP 97 (153)
T ss_dssp -EEEEEEEEE--GGG-------HHHHHHHHHHHHHS--EEEEEEEEEEESSSSSSE-EEEEEE-HHHHHHHHHHHHHHHH
T ss_pred CEeEEEecCcccccH-------HHHHHHHHHHHccCCCeEEEEccEEEcCCCCCEE-EEEcCCCHHHHHHHHHHHHHHHH
Confidence 999999887655433 44567888899999999999999999842 3332 34444444799999999999888
Q ss_pred CCccccc-CCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccceeeeCeeeEEeeh
Q 020850 235 APEKQLY-DPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYVEEY 297 (320)
Q Consensus 235 AP~kQ~~-d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~~a~~~~lWfVeE~ 297 (320)
...++-. ++.+-|.||||...+... ..+...+.+.....++++++++.++..
T Consensus 98 ~~~~~~~~~~~~PHiTia~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~l~L~~~~ 150 (153)
T PF13563_consen 98 FGFKQDSYRPFRPHITIARRLSPKQA-----------AEAIEKLQSEFPPISFTVDELALVRSD 150 (153)
T ss_dssp HHGGGGGGS----EEEEEEESS----------------------------EEEEE-EEEEEEEE
T ss_pred cCCccccCCCcceEEEEeccCCcchh-----------HHHHHHHhCcCCCcEEEEeEEEEEEEC
Confidence 7766543 789999999999987642 334445567777889999999988753
No 2
>PRK13679 hypothetical protein; Provisional
Probab=97.15 E-value=0.009 Score=52.07 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=77.8
Q ss_pred EEEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEE
Q 020850 118 RANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIV 197 (320)
Q Consensus 118 RavVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ 197 (320)
+.+++.+|+++...+. .+++.+.+.. -|. +| |+|+-..- ..++++++.=.++++++++...|+++.
T Consensus 3 ~~iai~~p~~~~~~l~-~~~~~~~~~~---~~v-~p---HITL~f~g------~~~~~~~~~l~~~l~~~~~~~~pf~l~ 68 (168)
T PRK13679 3 YGIVLFPSKKIQDFAN-SYRKRYDPHY---ALI-PP---HITLKEPF------EISDEQLDSIVEELRAIASETKPFTLH 68 (168)
T ss_pred eEEEEcCCHHHHHHHH-HHHHhhCccc---ccC-CC---ceEEecCC------CCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5677888876655553 3455554442 243 34 99996621 123445555577888888889999999
Q ss_pred EeEEEEcC--CCcEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCC
Q 020850 198 LDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHP 257 (320)
Q Consensus 198 ldRVvlts--SGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp 257 (320)
++++-.=+ +|++-+ .+....+...|+++|++.+-+.+.+ .+.+-|.||||.+++.
T Consensus 69 l~~~~~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~---~~f~PHiTlar~~~~~ 125 (168)
T PRK13679 69 VTKVSSFAPTNNVIYF--KVEKTEELEELHERLHSGDFYGEAE---YAFVPHITIGQGLSDD 125 (168)
T ss_pred EeccccCCCCCCEEEE--EccCCHHHHHHHHHHHhcccccccC---CCCCCeEEeeCCCCcH
Confidence 99985533 355422 2333346899999998875432222 2478899999987653
No 3
>PRK15124 2'-5' RNA ligase; Provisional
Probab=96.83 E-value=0.0093 Score=52.43 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=73.2
Q ss_pred eEE-EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccE
Q 020850 117 VRA-NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLK 195 (320)
Q Consensus 117 VRa-vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~ 195 (320)
.|+ +.+++|+++...+.+..+++......+ |+ +++++|+|+....- ..++.++.-.++++++ ...|++
T Consensus 5 ~RlFiAl~~p~~~~~~l~~~~~~~~~~~~~r--wv-~~~nlHiTL~FlG~------v~~~~~~~l~~~l~~~--~~~pF~ 73 (176)
T PRK15124 5 KRLFFAIDLPDEIRQQIIHWRATHFPPEAGR--PV-AAANLHLTLAFLGE------VSAEKQQALSQLAGRI--RQPGFT 73 (176)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHhccccCcc--cc-cccccEEEEEecCC------CCHHHHHHHHHHHHhc--ccCCeE
Confidence 354 445788888888877776665322222 55 47789999966544 2334444434444443 457999
Q ss_pred EEEeEEEEcCCCcEEEEeeecCC-C-ChHHHHHHHHhhCCCC---CcccccCCceeeehhhhhcC
Q 020850 196 IVLDRVILTSTGVLLGCWQVISG-T-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG 255 (320)
Q Consensus 196 ~~ldRVvltsSGvLL~cwqv~~G-t-ep~~iR~~Lr~alP~A---P~kQ~~d~~IlHtTLaRlL~ 255 (320)
+.++++-.=++.-+| |--..+ . +...|-++|++++..+ +.+- +..=|.||||...
T Consensus 74 l~l~~~g~Fp~prvl--wlg~~~~~~~L~~L~~~l~~~l~~~G~~~e~r---~f~PHiTLaR~~~ 133 (176)
T PRK15124 74 LTLDDAGQWPRSRVV--WLGMRQPPRGLLQLANMLRSQAARSGCYQSPQ---PFHPHITLLRDAS 133 (176)
T ss_pred EEECcccCcCCCCEE--EEEcCCCCHHHHHHHHHHHHHHHHcCCCCCCC---CCCCCEeeccCCC
Confidence 999998555543333 444433 2 4566666666654322 2222 3778999999754
No 4
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=96.43 E-value=0.037 Score=47.83 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=71.6
Q ss_pred EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEe
Q 020850 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 199 (320)
Q Consensus 120 vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ld 199 (320)
+.+++|+++...|.+.-+++-.... .....+++.+|+|+-... .+ ++.+++.=.+++++++. .|+++.++
T Consensus 5 iAl~~p~~~~~~l~~~~~~l~~~~~--~~r~~~~~~~HiTL~flg----~~--~~~~~~~l~~~l~~~~~--~~f~l~l~ 74 (179)
T TIGR02258 5 IAIDLPPEIREQLSRIQRKLKSPLD--GIKWVPPENLHITLKFLG----EV--DEEQVEELEDALAKIAE--PPFTLKLE 74 (179)
T ss_pred EEecCCHHHHHHHHHHHHHhhccCC--CcEECChHHCEEEEEEcc----CC--CHHHHHHHHHHHHHhcC--CCeEEEEe
Confidence 4567777776666555444432221 235677888999995432 12 22232222333444432 46999999
Q ss_pred EEEEcCC----CcEEEEeeecCC-CChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcC
Q 020850 200 RVILTST----GVLLGCWQVISG-TDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLG 255 (320)
Q Consensus 200 RVvltsS----GvLL~cwqv~~G-tep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~ 255 (320)
++-.=++ +++ |.-..+ .+...|+++|++++..+--+.--.+..-|.||||...
T Consensus 75 ~~~~F~~~~~~~vl---~l~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~f~PHiTlar~~~ 132 (179)
T TIGR02258 75 GIGVFGNPKRPRVL---WAGVEQSEELTQLHADLERELAKLGFSKEERPFTPHITLARKKS 132 (179)
T ss_pred eeeeCCCCCCCeEE---EEeeCCCHHHHHHHHHHHHHHHHcCCCCCCCCcCCCEEEEEecC
Confidence 9877554 333 333333 3688888999888754321100135789999999764
No 5
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.075 Score=47.95 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred EEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEEe
Q 020850 120 NVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVLD 199 (320)
Q Consensus 120 vVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~ld 199 (320)
+.+.+|++++..|.+..+.+......+ |+ .+++||+|+-+..- + .+..++.=+++++++.... |+.|.++
T Consensus 5 iAl~~p~~i~~~i~~~~~~~~~~~~~k--~v-~~en~HiTL~flGe----v--~e~~~~~l~~~l~~i~~~~-~f~i~l~ 74 (180)
T COG1514 5 IALDPPAEIAERLARIRARLKGARAIK--WV-EPENLHITLKFLGE----V--DEDKADELIEALARIAAPE-PFPITLD 74 (180)
T ss_pred EEecCCHHHHHHHHHHHHhcCcccccc--cc-cccCceEEEEccCC----c--CchHHHHHHHHHHHhhcCC-ceEEEEe
Confidence 456778888888888877776443112 44 67789999976432 2 2233333457888888888 9999999
Q ss_pred EEEEcC-CCcEEEEeeecCCC-ChHHHHHHHHhhCCCC---CcccccCCceeeehhhhhcC
Q 020850 200 RVILTS-TGVLLGCWQVISGT-DPMTIRAKLRTALPNA---PEKQLYDPAILHTSFARLLG 255 (320)
Q Consensus 200 RVvlts-SGvLL~cwqv~~Gt-ep~~iR~~Lr~alP~A---P~kQ~~d~~IlHtTLaRlL~ 255 (320)
++-.=+ .+..-..|.=..++ +...|.+.+++.+-++ +++.. ..=|.||||+-+
T Consensus 75 g~g~F~~~~~~rvi~~~v~~~~~L~~L~~~l~~~~~~~g~~~~~r~---F~PHvTl~r~k~ 132 (180)
T COG1514 75 GAGSFPNPRRPRVIWVGVEETEELRALAEELERALARLGLRPEERP---FVPHVTLARVKS 132 (180)
T ss_pred eEcccCCCCCCcEEEEcCCCcHHHHHHHHHHHHHHHhcCCCCCCCC---cCCCEEEEeecc
Confidence 986544 46666667666654 3788888888775555 23344 788999999998
No 6
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=95.58 E-value=0.031 Score=50.09 Aligned_cols=133 Identities=18% Similarity=0.107 Sum_probs=81.5
Q ss_pred eEEEEeec-CccchhHHHHHHHHHcCCCCCc-eeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHh-----
Q 020850 117 VRANVLYL-SPKYSVPISDAVKRIFSPHFDK-VIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAE----- 189 (320)
Q Consensus 117 VRavVl~L-p~~~a~~i~~av~~vl~p~~~~-~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~----- 189 (320)
-=.+++|+ .+++...+.+--.+++....+- .-++++++.+|+|+-..+-.. +++++.=.++++++..
T Consensus 2 thFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~~~~~i~~~~lHlTL~vl~L~~------~~~i~~a~~~L~~~~~~i~~~ 75 (209)
T PF10469_consen 2 THFLCIPLNSPEIQEKFKEFQNEVLSKDPGLDESAFIPPEKLHLTLGVLSLDT------DEEIEKAKEALKSLKQEIKDQ 75 (209)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHhhcCCCCHHHcCCcccceEEEEEeeCCC------HHHHHHHHHHHHHHHHHHhhh
Confidence 34689999 4466666544444455333321 236779999999998765433 3344444444444422
Q ss_pred --hcCccEEEEeEEEEcCC-----CcEEEEeeecCC-CChHHHHHHHHhhCCCCCccccc---CCceeeehhhhhcC
Q 020850 190 --DLCPLKIVLDRVILTST-----GVLLGCWQVISG-TDPMTIRAKLRTALPNAPEKQLY---DPAILHTSFARLLG 255 (320)
Q Consensus 190 --~~cPi~~~ldRVvltsS-----GvLL~cwqv~~G-tep~~iR~~Lr~alP~AP~kQ~~---d~~IlHtTLaRlL~ 255 (320)
+..|+++.+..+-.=+. -||-+-....++ .....+.+.|++.|-.+-=...- +...+|.||++.-.
T Consensus 76 ~~~~~~~~i~l~Gl~~f~~d~~~~~VLya~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~~H~Tl~n~~~ 152 (209)
T PF10469_consen 76 LQNPPPLKITLKGLGYFNDDPSKARVLYAKVSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFKPHITLMNTSY 152 (209)
T ss_pred ccCCCCceEEeeechhhCCCCCcceEEEEcccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcceEEEEEeccc
Confidence 24899999998876666 566654333333 34677777777776655422211 13689999999986
No 7
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=93.37 E-value=0.4 Score=36.79 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=49.1
Q ss_pred eecCccchhHHHHHHHHH---cCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850 122 LYLSPKYSVPISDAVKRI---FSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (320)
Q Consensus 122 l~Lp~~~a~~i~~av~~v---l~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (320)
+++|++....+.+..+++ +...+.+ |. .+.++|+|+-...--. ++.+.+=.++++.++...-|+.+.+
T Consensus 1 i~~p~~~~~~L~~l~~~l~~~~~~~~~r--~~-~~~~~HiTL~flg~~~------~~~~~~l~~~l~~~~~~~~~f~~~~ 71 (87)
T PF02834_consen 1 IDLPEEIKEQLNQLQERLRQALPPLGIR--WV-RPFNPHITLAFLGEVP------PDQLPELIEALANIASRFPPFTLTV 71 (87)
T ss_dssp EE-THHHHHHHHHHHHHHHHHCCSCTEE--EG-SCGGSEEEEEEEEEES------HHHHHHHHHHHHHHHCCCB-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhhccccCCc--cc-CCCCCeEEEEeCCCCC------HHHHHHHHHHHHhhhccCCCeEEEE
Confidence 456777666555444444 4444433 66 9999999996655221 4555555677888888889999999
Q ss_pred eEEEEcC
Q 020850 199 DRVILTS 205 (320)
Q Consensus 199 dRVvlts 205 (320)
+++.+=+
T Consensus 72 ~~~~~f~ 78 (87)
T PF02834_consen 72 DGFGLFP 78 (87)
T ss_dssp EEEEEEE
T ss_pred eEEEEeC
Confidence 9997653
No 8
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown.
Probab=90.64 E-value=9.6 Score=35.39 Aligned_cols=152 Identities=13% Similarity=0.202 Sum_probs=95.7
Q ss_pred cccCCCccccccccCCCCeEEEEeecCc--cchhHHHHHHHHHc----------CCCCCceeeeeCCCcceEEEeecCCC
Q 020850 99 FTLKDGSVTPVHKAANPPVRANVLYLSP--KYSVPISDAVKRIF----------SPHFDKVIWFQNSSLYHFSMFHASHH 166 (320)
Q Consensus 99 F~~~dg~v~P~l~~~~~pVRavVl~Lp~--~~a~~i~~av~~vl----------~p~~~~~i~~q~~~~yH~TmFHaShh 166 (320)
-+.++|+++=.-|...-+.-.+-++.++ +....+.+.+.++- .|.... =...+.-+|+|+
T Consensus 23 ~~~h~gR~R~~pHv~Gnw~t~vYi~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~s--~lg~~~~lHISL------ 94 (239)
T PF09749_consen 23 PSLHGGRIRSFPHVEGNWPTHVYIEWPPSEDQRELLEKLISKANSICPKLHSEFEPLLYS--DLGSPDPLHISL------ 94 (239)
T ss_pred cccccCceecccccCCccceEEEEEecCcHHHHHHHHHHHHHHHhhhhhhhhhccccccc--ccCCCCCeEEEe------
Confidence 4555788876668888888888888865 33334444444431 111110 022566799987
Q ss_pred CCCCCCChHHHHHHHHHHHHHH--hhcCccEEEEeEEEEc---CCCcEEEEeeecCCCC--hHHHHHHHHhhCCCCCccc
Q 020850 167 ISPVPATEDEIEAEATAVRAVA--EDLCPLKIVLDRVILT---STGVLLGCWQVISGTD--PMTIRAKLRTALPNAPEKQ 239 (320)
Q Consensus 167 ~dPvpat~~ei~~E~~av~~v~--~~~cPi~~~ldRVvlt---sSGvLL~cwqv~~Gte--p~~iR~~Lr~alP~AP~kQ 239 (320)
..|++-....++.=++.+++.+ .+..|+.+.++++-+= ...-.-+.+.|..|.. ...|=+++-+++-.-=..+
T Consensus 95 Sr~~~lr~~~id~f~~~lr~~l~~~~~~~F~v~f~~~~~~~N~e~TR~FL~l~V~~~~~~~l~~l~~~i~~~l~~~~lp~ 174 (239)
T PF09749_consen 95 SRTFPLRTHQIDPFVDSLRQALRSSNIRPFYVSFSGLDVYTNDEKTRSFLALRVSEGSNNELKRLLDRINEVLKEFGLPP 174 (239)
T ss_pred CCCccccHHHHHHHHHHHHHHHhhcCCceEEEEeCceEEEecCCCCeEEEEEEecccccHHHHHHHHHHHHHHHHhCCCc
Confidence 3445545566677788899999 8889999999885442 2334555666766643 3333334444443333445
Q ss_pred cc-CCceeeehhhhhcCCCC
Q 020850 240 LY-DPAILHTSFARLLGHPR 258 (320)
Q Consensus 240 ~~-d~~IlHtTLaRlL~pp~ 258 (320)
.| +.-..|.|+|--++.+.
T Consensus 175 ~Y~~~~~fHvSIAw~~~~~~ 194 (239)
T PF09749_consen 175 FYDEDPSFHVSIAWTLGDPS 194 (239)
T ss_pred ccCCCCCCEEEEEEECCCch
Confidence 67 88999999999998775
No 9
>PF08975 2H-phosphodiest: Domain of unknown function (DUF1868); InterPro: IPR015069 This family consist of hypothetical bacterial proteins. ; PDB: 2FSQ_A.
Probab=89.67 E-value=2.2 Score=36.76 Aligned_cols=88 Identities=17% Similarity=0.323 Sum_probs=40.4
Q ss_pred EEeecCcc--chhHH---HHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCC----C---ChHHHHHHHHHHHHH
Q 020850 120 NVLYLSPK--YSVPI---SDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVP----A---TEDEIEAEATAVRAV 187 (320)
Q Consensus 120 vVl~Lp~~--~a~~i---~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvp----a---t~~ei~~E~~av~~v 187 (320)
+|-+||+. ...++ ++.+++. |..++ .=+.++++||.|+|---...+=-+ + .+.-+++=-+.+.+=
T Consensus 16 vIchl~~~s~~~~al~~i~~~l~~~--~~~~k-~a~lP~sS~HMTVf~Gv~e~~R~~~~WP~~l~~d~~l~~~t~~~~~r 92 (118)
T PF08975_consen 16 VICHLPQDSPFYAALLAIQQRLRES--PFADK-LAFLPPSSYHMTVFEGVIESRREPGFWPADLPLDAPLQECTRYFAER 92 (118)
T ss_dssp EEEEB-TTSHHHHHHHHHHHHHHTS--GGGGG-EEE--GGG-EEEEEEEEETT--STTSS-TTS-TT--HHHHHHHHHHH
T ss_pred EEeecCCCChHHHHHHHHHHHHHhC--ccccc-eEecCcchhhhhhhccccccccCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 45678773 22233 3333332 22255 336788899999998665543222 1 222233333334444
Q ss_pred Hhh---cCccEEEEeEEEEcCCCcEE
Q 020850 188 AED---LCPLKIVLDRVILTSTGVLL 210 (320)
Q Consensus 188 ~~~---~cPi~~~ldRVvltsSGvLL 210 (320)
.++ ..||+|.+.+.-+.++|.+|
T Consensus 93 L~~f~~~~~f~m~v~~~~~~p~g~~l 118 (118)
T PF08975_consen 93 LKGFPLPGPFRMRVTRTGMRPQGIVL 118 (118)
T ss_dssp GGG--------EEE--EEEETTEEEE
T ss_pred HhcCCCCCCeEEEEEecccccccccC
Confidence 444 47999999999999988775
No 10
>PHA02574 57B hypothetical protein; Provisional
Probab=85.59 E-value=2.9 Score=37.12 Aligned_cols=110 Identities=8% Similarity=-0.053 Sum_probs=67.6
Q ss_pred CCCeEEEEe-ecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 020850 114 NPPVRANVL-YLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLC 192 (320)
Q Consensus 114 ~~pVRavVl-~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~c 192 (320)
+.++|+-+. .+|+++..+|.+.-++ +.+ .+ ..+++++|.|+-. + +..+..+ ..+.-
T Consensus 6 ~~~~RlF~Al~~~~~~r~~L~~lq~~-l~~--~r---~V~~enLHlTL~F-~-------------~~~v~~l---~~~~~ 62 (149)
T PHA02574 6 EFSQGTYVAAKFSEATLDALERLQRT-LRI--PN---PVPRDKLHSTIVY-S-------------RVYVPFI---PASGS 62 (149)
T ss_pred cccceEEEEEcCCHHHHHHHHHHHHh-ccC--Cc---ccCHHHCEEEEec-C-------------HHHhHHH---hccCC
Confidence 345676554 6788888888776666 333 33 4578889999955 1 2223333 22668
Q ss_pred ccEEEEeEEEEcC--CCcEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhh
Q 020850 193 PLKIVLDRVILTS--TGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFAR 252 (320)
Q Consensus 193 Pi~~~ldRVvlts--SGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaR 252 (320)
|+++.++++=.=+ .|-+| |--....+...+.+++++++-. .. .++..=|.||||
T Consensus 63 ~F~l~l~glG~F~~~~~rvl--Wlg~~~~~L~~L~~~l~~~l~~-~~---~r~F~PHITLaR 118 (149)
T PHA02574 63 TEVASSGHLEVWETQDKNAL--VLVLESEYLQCRHKYARALGAT-HD---FDDYTPHITLSY 118 (149)
T ss_pred CeEEEeccccccCCCCCCEE--EEEeCCHHHHHHHHHHHHHhhc-CC---CCCcCCcEEEee
Confidence 9999999985554 34332 2222222466666677776544 21 235788999999
No 11
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases. These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.
Probab=78.64 E-value=2.6 Score=32.23 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccceeeeCee
Q 020850 221 PMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSEL 291 (320)
Q Consensus 221 p~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~~a~~~~l 291 (320)
...+++.|+.+++..--+-. .+..+|-||+|+=.-++ +.+..+.+..+.+.+....+.++++++
T Consensus 11 L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~flg~~~~------~~~~~l~~~l~~~~~~~~~f~~~~~~~ 74 (87)
T PF02834_consen 11 LNQLQERLRQALPPLGIRWV-RPFNPHITLAFLGEVPP------DQLPELIEALANIASRFPPFTLTVDGF 74 (87)
T ss_dssp HHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEEEEEESH------HHHHHHHHHHHHHHCCCB-EEEEEEEE
T ss_pred HHHHHHHHhhhccccCCccc-CCCCCeEEEEeCCCCCH------HHHHHHHHHHHhhhccCCCeEEEEeEE
Confidence 56788888887766544433 56889999999975442 555555555555555555666777665
No 12
>PLN00108 unknown protein; Provisional
Probab=70.83 E-value=21 Score=34.56 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred CCeEEEEeec--CccchhHH---HHHHHHH--cCCC------CCce---eeeeCCCcceEEEeecCCCCCCCCCChHHHH
Q 020850 115 PPVRANVLYL--SPKYSVPI---SDAVKRI--FSPH------FDKV---IWFQNSSLYHFSMFHASHHISPVPATEDEIE 178 (320)
Q Consensus 115 ~pVRavVl~L--p~~~a~~i---~~av~~v--l~p~------~~~~---i~~q~~~~yH~TmFHaShh~dPvpat~~ei~ 178 (320)
++.=.+++|| .+++...+ .+.|-+. ..|. .+.+ -.+|+|+.+|.|+=..+-..+ +|++
T Consensus 35 ~~THFlavPL~~~p~i~~~~~~Fk~~Vl~~~~~~~~~f~~~l~~~gid~siF~~p~~LHLTLgmL~L~~~------eev~ 108 (257)
T PLN00108 35 VFTHFVSLPLAIYPDLKKNIEAFQNSVLGNNDKDPLKFQSTLAEMGIEKSIFVSPKTFHLTVVMLKLENN------ESVV 108 (257)
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHhccccccccccccccccCCCHHHcCCCCceEEEEEEEEcCCH------HHHH
Confidence 4588999999 36676544 3333331 1111 1111 278999999999988776533 3333
Q ss_pred HHHHHHHHH---Hhh---cCccEEEEeEEEEcC-----CCcEEEEeeecC-CC--ChH----HHHHHHHhhCCCCCcccc
Q 020850 179 AEATAVRAV---AED---LCPLKIVLDRVILTS-----TGVLLGCWQVIS-GT--DPM----TIRAKLRTALPNAPEKQL 240 (320)
Q Consensus 179 ~E~~av~~v---~~~---~cPi~~~ldRVvlts-----SGvLL~cwqv~~-Gt--ep~----~iR~~Lr~alP~AP~kQ~ 240 (320)
.=.+.++++ .+. -.|+.|.+..+=.-. +=||-+ .|.. |+ ... .|++...++ |-=.++.
T Consensus 109 kA~~~L~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps~~~VLYA--~Ve~~~~~~rLq~~ad~i~~~F~~a--GL~~~d~ 184 (257)
T PLN00108 109 KAQNILKSICSNVRQALKDRPVFIRLRGLDCMNGSLDKTRVLYA--PVEEVGHEGRLLNACHVIIDAFENA--GFAGKDA 184 (257)
T ss_pred HHHHHHHHHHHHHHHhhCCCCeEEEEEeehhcCCCcccceEEEE--eccccCchhHHHHHHHHHHHHHHHc--CCccccc
Confidence 333333333 222 279999999886552 333443 4553 21 333 445555554 1123444
Q ss_pred cCCceeeehhhhhc
Q 020850 241 YDPAILHTSFARLL 254 (320)
Q Consensus 241 ~d~~IlHtTLaRlL 254 (320)
.|+..+|.||+...
T Consensus 185 ~~~vKLH~TlmNt~ 198 (257)
T PLN00108 185 KSRLKLHATLMNAS 198 (257)
T ss_pred CcceeeEeEEechh
Confidence 47899999999986
No 13
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=62.83 E-value=9.4 Score=38.07 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=70.5
Q ss_pred EEeecCCCCCCCCCC--hHHHHHHHHHHHHHHhhcCccEEEEeEEEEcCCCcEEEEeeecCC----------CChHHHHH
Q 020850 159 SMFHASHHISPVPAT--EDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISG----------TDPMTIRA 226 (320)
Q Consensus 159 TmFHaShh~dPvpat--~~ei~~E~~av~~v~~~~cPi~~~ldRVvltsSGvLL~cwqv~~G----------tep~~iR~ 226 (320)
.|||+..|.++.... ++-++-+++-...|.+.+---+ .|+|||+|||=+-+.--+...+ +|++..+.
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~ 159 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRC 159 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHh
Confidence 579999887775543 2456666666666666664444 8999999998665532212222 23444333
Q ss_pred ---------HHHhh--CCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccceeeeCeeeEE-
Q 020850 227 ---------KLRTA--LPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGSEAVVSELWYV- 294 (320)
Q Consensus 227 ---------~Lr~a--lP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~~a~~~~lWfV- 294 (320)
.|.|. +-.|-++- .|-+.+.-+| ++||.-.+ -+..-+..+.+-|.|..=+....|+.
T Consensus 160 ~~~~Y~~sK~lAEkaAw~fa~e~~-~~lv~inP~l--V~GP~l~~--------~l~~s~~~~l~~i~G~~~~~~n~~~~~ 228 (327)
T KOG1502|consen 160 KKLWYALSKTLAEKAAWEFAKENG-LDLVTINPGL--VFGPGLQP--------SLNSSLNALLKLIKGLAETYPNFWLAF 228 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC-ccEEEecCCc--eECCCccc--------ccchhHHHHHHHHhcccccCCCCceee
Confidence 33333 44443331 2445555444 66765422 12333444445566655555555554
Q ss_pred eehhhHhhh
Q 020850 295 EEYDVLALA 303 (320)
Q Consensus 295 eE~d~LAlA 303 (320)
...+=+|.|
T Consensus 229 VdVrDVA~A 237 (327)
T KOG1502|consen 229 VDVRDVALA 237 (327)
T ss_pred EeHHHHHHH
Confidence 333334443
No 14
>PF05434 Tmemb_9: TMEM9; InterPro: IPR008853 This family contains several eukaryotic transmembrane proteins which are homologous to Homo sapiens transmembrane protein 9 Q9P0T7 from SWISSPROT. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to H. sapiens and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localised to the late endosomes and lysosomes []. Members of this family contain CXCXC repeats IPR004153 from INTERPRO in their N-terminal region.; GO: 0016021 integral to membrane
Probab=59.92 E-value=23 Score=31.87 Aligned_cols=17 Identities=35% Similarity=1.007 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHhc
Q 020850 24 IWFISFVLFYSFFHMAL 40 (320)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ 40 (320)
+|+++++++|.+|+|.+
T Consensus 62 l~Vi~lLvlYM~fL~~l 78 (149)
T PF05434_consen 62 LWVIGLLVLYMLFLMCL 78 (149)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999998765
No 15
>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes. The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.
Probab=46.52 E-value=1.6e+02 Score=26.69 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCcc-----EEEEeEEEEcCCCcEEEE--eeecCCCChHHHHHHHHhhCCCCCc------ccccCCceee
Q 020850 181 ATAVRAVAEDLCPL-----KIVLDRVILTSTGVLLGC--WQVISGTDPMTIRAKLRTALPNAPE------KQLYDPAILH 247 (320)
Q Consensus 181 ~~av~~v~~~~cPi-----~~~ldRVvltsSGvLL~c--wqv~~Gtep~~iR~~Lr~alP~AP~------kQ~~d~~IlH 247 (320)
.+.+++++.++.|+ .+.+++|....+ ---| .++....+...+++.+|+.+...|+ ...-++..=|
T Consensus 56 ~~~L~~~~~~~~~~~~~~~~v~~~~v~~g~~--yfq~vyl~v~~t~~L~~l~~~~r~~~~~~~~~~~~~~~~~~~~y~PH 133 (196)
T PF07823_consen 56 QKVLDSAAAALKPLPKNHFTVRFDKVASGDK--YFQCVYLEVEKTPELMSLAQIARELFVEGPPDEVKAAEWPREPYMPH 133 (196)
T ss_dssp HHHHHHHHHH-B-E-----EEEEEEEEEEEE--TTEEEEEEE---HHHHHHHCHHHHCT----------T----S----E
T ss_pred HHHHHHHHHhccCcccceeEEEeeeEeeCCe--EEEEEEEEecCChhHHHHHHHHHHHhhhccccccccccccCCCCCCe
Confidence 34566788888899 899999976543 1111 1233334689999999999977664 2223456667
Q ss_pred ehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhh------hccceeeeCeeeEEe
Q 020850 248 TSFARLLGHPRASPTEPHQLRFLHELVDSLNNQ------IRGSEAVVSELWYVE 295 (320)
Q Consensus 248 tTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~------L~G~~a~~~~lWfVe 295 (320)
-||.=-= .+. .+-+..++...++... +.|..++++++|.|.
T Consensus 134 lSLlY~d----~~~---~e~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~lv~ 180 (196)
T PF07823_consen 134 LSLLYGD----LPP---EEKAEAAEIAQRIDDALGVDSGISGLGWEGGELKLVR 180 (196)
T ss_dssp EEEE---------H---HHHHHHHHHHHHH-TT------GTT-EEEEEEEEEEE
T ss_pred EEEEEcC----CCc---ccHHHHHHHHHHhcccccccccCCCCCEeccEEEEEE
Confidence 7875321 111 3334556667777777 678888899999874
No 16
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=32.82 E-value=91 Score=26.75 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHHHhhcCccEEEEeEEEEcCCCcEEEEeeecCCCChHHHHHHHHhhCCCCCc
Q 020850 173 TEDEIEAEATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPE 237 (320)
Q Consensus 173 t~~ei~~E~~av~~v~~~~cPi~~~ldRVvltsSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~ 237 (320)
-++.+..+.+.|.+...-.|-| ||+-+.+|+=| +.+.+-|+.++.++|..||+.--
T Consensus 42 iP~~F~~~c~dIa~~~~~~G~i-----k~~r~~~g~rL----~fS~~ip~~v~QriRNvfP~~~~ 97 (108)
T PF12321_consen 42 IPPGFLHNCRDIARRYPFRGTI-----KVYRQRGGVRL----HFSRSIPKKVQQRIRNVFPHQGF 97 (108)
T ss_pred CChHHHHHHHHHHHhCCCcEEE-----EEEEeCCceEE----EEeCCCCHHHhhhhhhcCCCcCc
Confidence 3567777777777766555666 56678899999 55666789999999999987653
No 17
>COG5255 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.15 E-value=77 Score=30.46 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=72.1
Q ss_pred CceeeeeCCCcceEEEeecCCCCCCCCC---ChHHHHHHHHHHHHHH----h---hcC-ccEEEEeEEEEcCCCcEEEEe
Q 020850 145 DKVIWFQNSSLYHFSMFHASHHISPVPA---TEDEIEAEATAVRAVA----E---DLC-PLKIVLDRVILTSTGVLLGCW 213 (320)
Q Consensus 145 ~~~i~~q~~~~yH~TmFHaShh~dPvpa---t~~ei~~E~~av~~v~----~---~~c-Pi~~~ldRVvltsSGvLL~cw 213 (320)
++ +=++++++.|.|+|.---+.+=.+. +..-+.--++++.+.- + .+| +|.|-+-. +-|.|.++
T Consensus 72 dk-lt~tP~sSlHMTvfqg~~e~~R~~~~WpqdlPLDtpi~~~~~~~~erLk~F~l~~~~~~mrvte--~rp~~i~v--- 145 (239)
T COG5255 72 DK-LTFTPVSSLHMTVFQGLIEERRELPYWPQDLPLDTPIDAITDYYAERLKIFPLLDEEFNMRVTE--MRPQGILV--- 145 (239)
T ss_pred hh-hccCCcchhhHHHHHHHhhhcccCCCCCccCCCCCcHHHHHHHHHHHHhcccCCchhhcchhhc--ccccceEe---
Confidence 55 6789999999999976554332221 0000011122222221 2 236 66654433 34566554
Q ss_pred eecCCCC-----hHHHHHHHHhhCC-CCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhcc
Q 020850 214 QVISGTD-----PMTIRAKLRTALP-NAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRG 283 (320)
Q Consensus 214 qv~~Gte-----p~~iR~~Lr~alP-~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G 283 (320)
.+.+| ...+|..|.+.|- ++|- .|+.-.|.|||=|-.+= .+ +.....|++-+.+.+.|+-
T Consensus 146 --~paddad~~~l~~~Rd~ls~~~g~r~P~---HDaY~FHITlgYl~~wl--tp---ee~a~~q~~l~e~~e~la~ 211 (239)
T COG5255 146 --EPADDADAKILEEWRDYLSEKFGYRHPD---HDAYQFHITLGYLRIWL--TP---EEEAEWQAVLDELLEILAE 211 (239)
T ss_pred --ccCCHHHHHHHHHHHHHHhhhhcccCCC---CcceEEEEEeeeEeeec--Ch---hhhHHHHHHHHHHHHHHHh
Confidence 33333 6677888888764 4454 45589999999887643 33 4455678888888887764
No 18
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=27.84 E-value=60 Score=32.98 Aligned_cols=46 Identities=33% Similarity=0.642 Sum_probs=32.0
Q ss_pred hhcCccEEEEeEEEEcCCCcEEEEeeecCCCChH----HHHHHHHhh-CCCCCccccc
Q 020850 189 EDLCPLKIVLDRVILTSTGVLLGCWQVISGTDPM----TIRAKLRTA-LPNAPEKQLY 241 (320)
Q Consensus 189 ~~~cPi~~~ldRVvltsSGvLL~cwqv~~Gtep~----~iR~~Lr~a-lP~AP~kQ~~ 241 (320)
..+|-++ |-+.|+|+|+ -++.++| ||+ .||...+.+ +|-+|.+.+|
T Consensus 325 gK~C~l~-----ikL~pdGtl~-~~~~~~G-d~~lCqAalsAvAk~~kiP~ppsqdVy 375 (387)
T COG3064 325 GKTCRLR-----IKLAPDGTLL-DIKPEGG-DPALCQAALSAVAKTAKIPKPPSQDVY 375 (387)
T ss_pred CceeEEE-----EEEcCCccee-eccccCC-ChHHHHHHHHHHHHhccCCCCCchHHH
Confidence 4467664 5579999954 5666677 554 566666666 9999988776
No 19
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.89 E-value=1.9e+02 Score=21.37 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhcCccEEEEeEEEEc-C--CCcEEEEeeecCCCChHHHHHHHHhhCCC
Q 020850 177 IEAEATAVRAVAEDLCPLKIVLDRVILT-S--TGVLLGCWQVISGTDPMTIRAKLRTALPN 234 (320)
Q Consensus 177 i~~E~~av~~v~~~~cPi~~~ldRVvlt-s--SGvLL~cwqv~~Gtep~~iR~~Lr~alP~ 234 (320)
...|+..+.+.+.... ..-..|+ + .|+++++..... +.+.|++++++.+||
T Consensus 32 ~~~~i~~~~~~~~~~G-----a~~~~~sGsG~G~~v~~l~~~~~--~~~~v~~~l~~~~~~ 85 (85)
T PF08544_consen 32 LTPEIDELKEAAEENG-----ALGAKMSGSGGGPTVFALCKDED--DAERVAEALREHYKN 85 (85)
T ss_dssp HHHHHHHHHHHHHHTT-----ESEEEEETTSSSSEEEEEESSHH--HHHHHHHHHHHHTH-
T ss_pred cCHHHHHHHHHHHHCC-----CCceecCCCCCCCeEEEEECCHH--HHHHHHHHHHHhCCC
Confidence 3456677777777666 2233344 4 467777763333 478899999998875
No 20
>COG3617 Prophage antirepressor [Transcription]
Probab=23.23 E-value=91 Score=28.46 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred ehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhc--cceeeeCeeeEEeehhhHhhhcCCc
Q 020850 248 TSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIR--GSEAVVSELWYVEEYDVLALALDGR 307 (320)
Q Consensus 248 tTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~--G~~a~~~~lWfVeE~d~LAlAL~g~ 307 (320)
+-+||+||-.. +. +.+++.|+..++... +..=--.++|+|-|..++.|++..+
T Consensus 33 ~Dva~~Lg~~n-~~------k~l~~~~d~~~~~~~l~~~~g~~q~~~iiSE~glY~li~~sr 87 (176)
T COG3617 33 ADVARALGYTN-PS------KALQRHCDEVTERMSLTDSLGREQEVRIISESGLYKLIMRSR 87 (176)
T ss_pred HHHHHHHCCCC-HH------HHHHHHhhhhhhcccccccCCCCCceEEEccccHHHHHHHcC
Confidence 45799998775 21 578999998887655 4444455899999999999998764
No 21
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.88 E-value=1.4e+02 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCccEEEEeEEEEcCCCcEE
Q 020850 181 ATAVRAVAEDLCPLKIVLDRVILTSTGVLL 210 (320)
Q Consensus 181 ~~av~~v~~~~cPi~~~ldRVvltsSGvLL 210 (320)
++.|.+..+++.++.+++|=|.++.||.-|
T Consensus 87 ie~va~~l~~~~~~~vV~DPVmvaksG~~L 116 (263)
T COG0351 87 IEVVAEKLKKYGIGPVVLDPVMVAKSGDPL 116 (263)
T ss_pred HHHHHHHHHhcCCCcEEECceEEEcCCCcc
Confidence 566667777777666999999999999877
No 22
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=22.82 E-value=1.1e+02 Score=31.39 Aligned_cols=40 Identities=33% Similarity=0.640 Sum_probs=25.5
Q ss_pred EEEEcCCCcEEEEeeecCCCChHHHHHHHH----hhCCCCCccccc
Q 020850 200 RVILTSTGVLLGCWQVISGTDPMTIRAKLR----TALPNAPEKQLY 241 (320)
Q Consensus 200 RVvltsSGvLL~cwqv~~Gtep~~iR~~Lr----~alP~AP~kQ~~ 241 (320)
||-|.|+|.|+.. +..+| |++.-|+.++ ..||-.|...+|
T Consensus 331 rI~LapDG~V~sV-~~sSG-d~aldrAA~~Aar~a~lP~pP~~~vy 374 (387)
T PRK09510 331 RIKLAPDGTLLDI-KKEGG-DPALCQAALAAAKTAKIPKPPSQEVY 374 (387)
T ss_pred EEEEcCCCcEEee-eeCCC-CHHHHHHHHHHHHcCCCCCCCchHHH
Confidence 8999999998865 44455 6655444443 337766655444
No 23
>PRK00766 hypothetical protein; Provisional
Probab=21.32 E-value=1.1e+02 Score=28.34 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=30.9
Q ss_pred EEEEcCCCcEEEEeeec------------------CCCChHHHHHHHHhhCCCCCcc
Q 020850 200 RVILTSTGVLLGCWQVI------------------SGTDPMTIRAKLRTALPNAPEK 238 (320)
Q Consensus 200 RVvltsSGvLL~cwqv~------------------~Gtep~~iR~~Lr~alP~AP~k 238 (320)
|+||- +|+.++.||++ .-.|.+.|+++|+..||....+
T Consensus 73 ~~V~L-~Git~agFNvvD~~~l~~~tg~PVI~V~r~~p~~~~ie~AL~k~f~~~~~R 128 (194)
T PRK00766 73 RVIML-DGITYGGFNVVDIEELYRETGLPVIVVMRKKPDFEAIESALKKHFSDWEER 128 (194)
T ss_pred EEEEE-CCEeeeeeEEecHHHHHHHHCCCEEEEEecCCCHHHHHHHHHHHCCCHHHH
Confidence 55554 59999999999 3356889999999999998765
No 24
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=21.19 E-value=4.5e+02 Score=25.17 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=52.4
Q ss_pred cceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhh-----------cCccEEEEeEEEEcCCCcEEEEeeec-CCCC-h
Q 020850 155 LYHFSMFHASHHISPVPATEDEIEAEATAVRAVAED-----------LCPLKIVLDRVILTSTGVLLGCWQVI-SGTD-P 221 (320)
Q Consensus 155 ~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~-----------~cPi~~~ldRVvltsSGvLL~cwqv~-~Gte-p 221 (320)
.+|+||-|-+.--+ -| ..+-+..=.+........ ...+++.|+|+|-. |-+ +|+.|. .+.+ .
T Consensus 115 ~FHVTL~H~as~k~-~~-~k~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~rlvwd--~ri-mai~V~~~~~~~~ 189 (257)
T PF08302_consen 115 EFHVTLIHRASSKE-QP-AKELWKRYTKLYKSALKKNPKQEPTQTPTLGSCDVRLERLVWD--DRI-MAIVVRIVPPEDE 189 (257)
T ss_pred CCeEEEEecccCCc-Cc-chHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEEC--CcE-EEEEEEccCcccc
Confidence 48999999877766 33 223332222222222221 35688999999944 444 455544 3211 1
Q ss_pred HHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHh
Q 020850 222 MTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNN 279 (320)
Q Consensus 222 ~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~ 279 (320)
..- .+.=+.. .-+.|.|+|-+=..-+ +- + =.++|.+|-+
T Consensus 190 ~~~----------~~~~~c~-N~~~HITVGT~~~~Vk-P~-e------SN~Ll~~~~~ 228 (257)
T PF08302_consen 190 EDE----------VPEWECT-NKIPHITVGTRDPGVK-PK-E------SNDLLERWLE 228 (257)
T ss_pred ccc----------cCCcccC-CCCCEEEEEcCCCCCC-cc-h------HHHHHHHHHh
Confidence 101 1111211 2589999998743222 22 1 2567777765
No 25
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.15 E-value=17 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=18.6
Q ss_pred HHHHHHHHhhCCCCCcccccCCceeeehhh
Q 020850 222 MTIRAKLRTALPNAPEKQLYDPAILHTSFA 251 (320)
Q Consensus 222 ~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLa 251 (320)
-.|+++||+++|.|.++++-+-+-=|+.||
T Consensus 16 KrL~e~l~~k~P~at~~~l~~lve~RsdFA 45 (68)
T PF09164_consen 16 KRLAERLRAKLPDATPTELKELVEKRSDFA 45 (68)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHhhHH
Confidence 358899999999999998633333344443
No 26
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.20 E-value=2e+02 Score=28.53 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCccEEEEeEEEEcCCCcEEEEeeecC-CCChHHHHHHHHhhC
Q 020850 181 ATAVRAVAEDLCPLKIVLDRVILTSTGVLLGCWQVIS-GTDPMTIRAKLRTAL 232 (320)
Q Consensus 181 ~~av~~v~~~~cPi~~~ldRVvltsSGvLL~cwqv~~-Gtep~~iR~~Lr~al 232 (320)
...+-+++..+|-+ .|.++-||++||+--+.. ..||..+|-.|.+..
T Consensus 234 ~~~lL~l~e~~~~~-----Gv~VAHSGtmlGli~D~~~~~d~~k~~~~l~r~~ 281 (293)
T COG4542 234 LNELLRLVEETCAI-----GVIVAHSGTMLGLIYDRKYALDPRKLRVVLARNY 281 (293)
T ss_pred HHHHHHHHHHhccc-----ceEEeccCceEEeeeccccccchHHHHHHHHHhh
Confidence 34566777778877 678999999999999886 678999999887764
Done!