Query 020850
Match_columns 320
No_of_seqs 38 out of 40
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:06:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vgj_A Hypothetical protein PH 98.2 3.7E-05 1.3E-09 64.5 14.2 127 119-257 4-135 (184)
2 2vfk_A AKAP18 delta; APO, hydr 97.7 0.00021 7E-09 61.2 10.4 129 117-255 3-145 (205)
3 2d4g_A Hypothetical protein BS 97.6 0.00036 1.2E-08 57.9 9.6 161 119-316 4-168 (171)
4 1iuh_A 2'-5' RNA ligase; riken 97.3 0.00094 3.2E-08 57.6 8.7 124 119-257 4-140 (198)
5 1jh6_A Cyclic phosphodiesteras 97.2 0.0045 1.6E-07 53.2 11.8 152 115-295 6-160 (189)
6 2fsq_A ATU0111 protein; alpha- 97.1 0.0023 7.8E-08 59.2 9.9 181 96-294 25-224 (243)
7 2vx8_A Nucleoporin-like protei 34.5 36 0.0012 29.3 4.0 54 196-250 44-99 (169)
8 4b93_A Vesicle-associated memb 20.0 78 0.0027 27.2 3.5 46 202-248 8-55 (189)
9 2kog_A Vesicle-associated memb 18.6 24 0.00083 28.9 -0.0 27 10-36 88-114 (119)
10 1tol_A G3P - TOLA, protein (fu 18.4 69 0.0023 29.2 2.9 68 173-242 125-202 (222)
No 1
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=98.20 E-value=3.7e-05 Score=64.51 Aligned_cols=127 Identities=10% Similarity=0.082 Sum_probs=86.2
Q ss_pred EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850 119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (320)
Q Consensus 119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (320)
.+++++|+++...|.+.-+++- +. +......+++.+|+|+..... ..++++++=.+++++++++.-|+++.+
T Consensus 4 Fial~~p~~~~~~l~~~~~~l~-~~-~~~~~~v~~~~lHiTL~flg~------~~~~~~~~l~~~l~~~~~~~~pf~l~l 75 (184)
T 1vgj_A 4 FIAIDVNESVRDSLVRAQDYIG-SK-EAKIKFVERENLHITLKFLGE------ITEEQAEEIKNILKKIAEKYKKHEVKV 75 (184)
T ss_dssp EEEEECCHHHHHHHHHHHHHHC-SS-SEEEEECCGGGCEEEEEEEES------CCHHHHHHHHHHHHHHHTTSBCEEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHh-hc-CCCcEecCccccEEEEEeecC------CCHHHHHHHHHHHHHHHccCCCeEEEE
Confidence 3567888888888876666664 33 213555788889999976542 234555555678888888889999999
Q ss_pred eEEEEcCCC---cEEEEeeecCCCChHHHHHHHHhhCCCC--CcccccCCceeeehhhhhcCCC
Q 020850 199 DRVILTSTG---VLLGCWQVISGTDPMTIRAKLRTALPNA--PEKQLYDPAILHTSFARLLGHP 257 (320)
Q Consensus 199 dRVvltsSG---vLL~cwqv~~Gtep~~iR~~Lr~alP~A--P~kQ~~d~~IlHtTLaRlL~pp 257 (320)
+++-.=+++ -+| .-.+.++.+...|+++|++++... +... +..-|.||||...+.
T Consensus 76 ~g~g~F~~~~~p~vl-~~~v~~~~~L~~L~~~l~~~l~~~g~~~~~---~f~PHiTLar~~~~~ 135 (184)
T 1vgj_A 76 KGIGVFPNPNYIRVI-WAGIENDEIIREMAREIEDELAKLGFKKEG---NFVAHITLGRVKFVK 135 (184)
T ss_dssp EEEEEEECSSSEEEE-EEEEETCHHHHHHHHHHHHHHHTTTCCCCC---CCCCEEEEEEEEEES
T ss_pred eeEeeCCCCCCCcEE-EEEecCCHHHHHHHHHHHHHHHHcCCCCCC---CccceEEEEeecccC
Confidence 998765552 222 122334446889999998887543 2211 578999999987644
No 2
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=97.72 E-value=0.00021 Score=61.25 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=82.7
Q ss_pred eEEE-EeecCc-cchhHHHHHHHHHcC--CCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhc-
Q 020850 117 VRAN-VLYLSP-KYSVPISDAVKRIFS--PHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDL- 191 (320)
Q Consensus 117 VRav-Vl~Lp~-~~a~~i~~av~~vl~--p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~- 191 (320)
.|+- .+++|+ ++...|.+.-+++.. |..+ .-| .+++.+|+|+....- ..+++++.=.+++++++..+
T Consensus 3 ~r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~-v~~~~~HiTL~flg~------~~~~~~~~l~~~l~~~~~~~~ 74 (205)
T 2vfk_A 3 PNYFLSIPITNKKITAGIKVLQNSILRQDNRLT-KAM-VGDGSFHITLLVMQL------LNEDEVNIGTDALLELKPFVE 74 (205)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHHHHHHCGGGG-GGB-CCTTCCEEEEEEECC------CSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHHHhcCcchH-HHh-CCcCccEEEEEEEEc------CCHHHHHHHHHHHHHHHHHHH
Confidence 3444 489997 787777666655542 2211 125 457789999976532 23455555566777766655
Q ss_pred -----CccEEEEeEEEEcCCCcEEEEeeecCC---CChHHHHHHHHhhCCCCCc-ccccCCceeeehhhhhcC
Q 020850 192 -----CPLKIVLDRVILTSTGVLLGCWQVISG---TDPMTIRAKLRTALPNAPE-KQLYDPAILHTSFARLLG 255 (320)
Q Consensus 192 -----cPi~~~ldRVvltsSGvLL~cwqv~~G---tep~~iR~~Lr~alP~AP~-kQ~~d~~IlHtTLaRlL~ 255 (320)
-|+++.++++-.=+.+||-+. +.++ .....|+++|++++..+-- .+-..+..-|.||||.-.
T Consensus 75 ~~~~~~pf~l~l~g~~~F~~~vl~~~--v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~~ 145 (205)
T 2vfk_A 75 EILEGKHLTLPFHGIGTFQGQVGFVK--LADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTFMKLSK 145 (205)
T ss_dssp HHTTTSCCEEEEEEEEEETTTEEEEE--ECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGGG
T ss_pred HHhCCCCcEEEEechhhCCCcEEEEe--ecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEEEeccc
Confidence 899999999977776644332 3232 2478888888888654321 111346889999999864
No 3
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=97.58 E-value=0.00036 Score=57.92 Aligned_cols=161 Identities=16% Similarity=0.225 Sum_probs=98.7
Q ss_pred EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850 119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (320)
Q Consensus 119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (320)
++++++|+++...|.+.-+++ .+. .-|+.+ |+|+..... ..+.++++=.++++++++++.|+++.+
T Consensus 4 Fiai~~~~~~~~~l~~~~~~~-~~~---~~~v~p----HiTL~f~g~------~~~~~~~~l~~~l~~~~~~~~pf~l~l 69 (171)
T 2d4g_A 4 GIVLFPSKKLQDLANSYRKRY-DPS---YSLIPP----HLTLRASFE------CAEEKADQLVSHLRNIAKESHPLVLKM 69 (171)
T ss_dssp EEEBCCCHHHHHHHHHHHHHH-CGG---GGTSCS----CBCCSSCEE------CCGGGHHHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHh-Ccc---cCCCCC----eEEeecCCc------CChHHHHHHHHHHHHHHccCCCEEEEE
Confidence 356677887777776655554 331 125444 999965442 123344555678888899999999999
Q ss_pred eEEEEcCCC--cEEEEeeecCCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHH
Q 020850 199 DRVILTSTG--VLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDS 276 (320)
Q Consensus 199 dRVvltsSG--vLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~ 276 (320)
+++-.=+.+ ++-+ .+....+...|+++|++.+...+.+. +..-|.||||...+ + .+.++...
T Consensus 70 ~~~g~F~~~~~vl~l--~~~~~~~L~~L~~~l~~~~~~~~~~~---~f~PHiTLar~~~~--------~---~~~~~~~~ 133 (171)
T 2d4g_A 70 TKYSSFAPVNNVIYI--KAEPTEELKTLNEKLYTGVLAGEQEY---NFVPHVTVGQNLSD--------D---EHSDVLGQ 133 (171)
T ss_dssp EEEEECTTTCCCEEE--EECCCHHHHHHHHHTTSGGGCSCCCS---CCCCEEEEECSCCH--------H---HHHHHHHH
T ss_pred CCcEEeCCCCcEEEE--EccCChHHHHHHHHHHhcccccccCC---CCCCeEEeecCCCH--------H---HHHHHHHH
Confidence 999776533 4432 22233468899999999987654333 47889999995521 2 13344444
Q ss_pred HH-hhhccceeeeCeeeEEeehhhHhhhcCCcee-eeeeccc
Q 020850 277 LN-NQIRGSEAVVSELWYVEEYDVLALALDGRMK-VRKFPLE 316 (320)
Q Consensus 277 lt-~~L~G~~a~~~~lWfVeE~d~LAlAL~g~~~-~~~~~~~ 316 (320)
+. ..+ ...++++++-.++. .-|+.|+ ...+||+
T Consensus 134 ~~~~~~-~~~~~v~~i~L~~s------~~g~~y~~l~~~~L~ 168 (171)
T 2d4g_A 134 LKMQEV-SHEEIVDRFHLLYQ------LENGSWTVYETFLLG 168 (171)
T ss_dssp HTTSCC-CEEEEECEEEEEEE------CTTSCEEEEEEEECC
T ss_pred hcCCCC-ceeEEECeEEEEEE------CCCCcEEEEEEEecC
Confidence 32 222 23566676666554 3366776 4456664
No 4
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=97.28 E-value=0.00094 Score=57.58 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=80.2
Q ss_pred EEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCccEEEE
Q 020850 119 ANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPLKIVL 198 (320)
Q Consensus 119 avVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi~~~l 198 (320)
++.+.+|+++...|.+.-+++- ... +.=|+ +++.+|+|+..... ..++.+++=.+++++++++.-|+++.+
T Consensus 4 Fial~~p~~~~~~l~~~~~~l~-~~~-~~r~v-~~~~~HiTL~flge------v~~~~~~~l~~~l~~~~~~~~pf~l~l 74 (198)
T 1iuh_A 4 FYAVFLPEEVRAALVEAQTKVR-PFR-GWKPV-PPHQLHLTLLFLGE------RPEEELPDYLALGHRLARLEAPFRARL 74 (198)
T ss_dssp EEEEECCHHHHHHHHHHHGGGT-TCT-TEEEC-CGGGCEEEEEEEEE------CCGGGHHHHHHHHHHHHHHSCCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHhh-hhc-CCccc-CCCCCEEEEEeCCc------CCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 3567788887777766555553 311 11254 57889999965432 223445555678888888999999999
Q ss_pred eEEEEcCCC----cEEEEeeecCCCChHHHHHHHHhhCCCC--------C-cccccCCceeeehhhhhcCCC
Q 020850 199 DRVILTSTG----VLLGCWQVISGTDPMTIRAKLRTALPNA--------P-EKQLYDPAILHTSFARLLGHP 257 (320)
Q Consensus 199 dRVvltsSG----vLL~cwqv~~Gtep~~iR~~Lr~alP~A--------P-~kQ~~d~~IlHtTLaRlL~pp 257 (320)
+++-.=+.+ ||-+ .+ ...+...|.++|++++... + .+ .+..=|.||||...+.
T Consensus 75 ~g~g~F~~~~~p~vl~l--~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~---~~f~PHiTLar~~~~~ 140 (198)
T 1iuh_A 75 RGTGYFPNEGTPRVWFA--KA-EAEGFLRLAEGLRAGVEELLGEEAVRIPGWD---KPFKPHITLARRKAPA 140 (198)
T ss_dssp EEEEEESSSSSCSEEEE--EE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTTTT---SCCCCEEEEEEESSCC
T ss_pred cceEECCCCCCCCEEEE--EC-CCHHHHHHHHHHHHHHHHhcCCCcccccCCC---CCCCCcEEeEeccCcc
Confidence 999876653 4421 12 2235778888877665432 1 12 2478899999987644
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=97.16 E-value=0.0045 Score=53.22 Aligned_cols=152 Identities=11% Similarity=0.081 Sum_probs=92.8
Q ss_pred CCeEEEEeecCccchhHHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCCCCCCChHHHHHHHHHHHHHHhhcCcc
Q 020850 115 PPVRANVLYLSPKYSVPISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHISPVPATEDEIEAEATAVRAVAEDLCPL 194 (320)
Q Consensus 115 ~pVRavVl~Lp~~~a~~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~dPvpat~~ei~~E~~av~~v~~~~cPi 194 (320)
..-|++++..|+++...|.+..+++= ... + .++..+|+|+ +.+++.. ++.=.+++++++++..|+
T Consensus 6 ~~~~~f~~~pp~~~~~~l~~~~~~l~-~~~----~-~~~~~~HiTL------lG~~~~~---~~~l~~~L~~~a~~~~pf 70 (189)
T 1jh6_A 6 KDVYSVWALPDEESEPRFKKLMEALR-SEF----T-GPRFVPHVTV------AVSAYLT---ADEAKKMFESACDGLKAY 70 (189)
T ss_dssp CEEEEEEEEECTTTHHHHHHHHHHHH-HHH----T-CCCCCCCEEE------EEEEEEC---HHHHHHHHHHHHHTCBCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHHHHH-HHc----C-CCCCCCEEEE------eCCCCCC---HHHHHHHHHHHHhhCCCe
Confidence 34677777668887777766665552 111 1 1668999999 2333322 233356778888889999
Q ss_pred EEEEeEEEE--cCCCcEEEEeeec-CCCChHHHHHHHHhhCCCCCcccccCCceeeehhhhhcCCCCCCCCchhHHHHHH
Q 020850 195 KIVLDRVIL--TSTGVLLGCWQVI-SGTDPMTIRAKLRTALPNAPEKQLYDPAILHTSFARLLGHPRASPTEPHQLRFLH 271 (320)
Q Consensus 195 ~~~ldRVvl--tsSGvLL~cwqv~-~Gtep~~iR~~Lr~alP~AP~kQ~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~ 271 (320)
.+.+++|=. ..-.+ +|--+ .+.+...|.+++++++.-.|. .+..=|.||||.=-++ +..+.+.
T Consensus 71 ~l~l~g~g~~~~~~rv---lw~~v~~~~~L~~L~~~v~~~~g~~~~----~~f~PHlTLar~~~~~-------~~~~~~~ 136 (189)
T 1jh6_A 71 TATVDRVSTGTFFFQC---VFLLLQTTPEVMEAGEHCKNHFNCSTT----TPYMPHLSLLYAELTE-------EEKKNAQ 136 (189)
T ss_dssp EEEEEEEEEEEETTEE---EEEEECCCHHHHHHHHHHHHHTTCCCC----SCCCCEEEEECCCCCH-------HHHHHHH
T ss_pred EEEEcceeccCccceE---EEEeecCCHHHHHHHHHHHHHhCCCCC----CCCCCeEEEEEecCCH-------HHHHHHH
Confidence 999999976 11222 34444 334688899999998755543 2578899999862111 2222233
Q ss_pred HHHHHHHhhhccceeeeCeeeEEe
Q 020850 272 ELVDSLNNQIRGSEAVVSELWYVE 295 (320)
Q Consensus 272 a~c~~lt~~L~G~~a~~~~lWfVe 295 (320)
+....+...+.+..++++++..++
T Consensus 137 ~~l~~~~~~~~~~~~~v~~~~L~~ 160 (189)
T 1jh6_A 137 EKAYTLDSSLDGLSFRLNRLALCK 160 (189)
T ss_dssp HHHHHHCTTCTTCEEEEEEEEEEE
T ss_pred HHHHhhccCCCCCcEEeeEEEEEE
Confidence 333333234555677777776654
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=97.10 E-value=0.0023 Score=59.16 Aligned_cols=181 Identities=12% Similarity=0.140 Sum_probs=104.4
Q ss_pred cccc-ccC-CCccccccccCCCCeEEEEeecCcc--chh---HHHHHHHHHcCCCCCceeeeeCCCcceEEEeecCCCCC
Q 020850 96 SDIF-TLK-DGSVTPVHKAANPPVRANVLYLSPK--YSV---PISDAVKRIFSPHFDKVIWFQNSSLYHFSMFHASHHIS 168 (320)
Q Consensus 96 ~dlF-~~~-dg~v~P~l~~~~~pVRavVl~Lp~~--~a~---~i~~av~~vl~p~~~~~i~~q~~~~yH~TmFHaShh~d 168 (320)
.++- +|+ ||...| .+... +|-|+++. +.. .|++.+++. +..++ +=+.++++||.|||----..+
T Consensus 25 ~~~g~Kf~~~G~~~p-----FpGnT-vI~~l~~~s~~~~~l~~iq~~L~~~--~~~~~-~~~lPpsS~HMTvfdgv~e~~ 95 (243)
T 2fsq_A 25 RHLGSRFSAEGEFLP-----EPGNT-VVCHLVEGSQTESAIVSTRQRFLDM--PEASQ-LAFTPVSSLHMTVFQGVIESR 95 (243)
T ss_dssp TTBTTTBCTTSCBCC-----CCEEE-EEEEBCTTSHHHHHHHHHHHHHHTS--GGGGG-EEECCGGGCEEEEEEEEETTC
T ss_pred cccccCCCCCCCEec-----CCCCe-EEEecCCCChHHHHHHHHHHHHHhc--cccCc-eeeCCchhhhhhhcccccccc
Confidence 4443 455 676666 22233 44566552 223 344444432 22344 336788899999997332221
Q ss_pred -C---CCC---ChHHHHHHHHHHHHHHhhc---CccEEEEeEEEEcCCCcEEEEeeecCCCChHHHHHHHHhhCCCCCcc
Q 020850 169 -P---VPA---TEDEIEAEATAVRAVAEDL---CPLKIVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEK 238 (320)
Q Consensus 169 -P---vpa---t~~ei~~E~~av~~v~~~~---cPi~~~ldRVvltsSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~k 238 (320)
. -|+ .+..++.--+.+.+-.+++ +||++.+..+ .++|+.|.-.....-.-..++|++|.+.+.---+
T Consensus 96 r~~~~wP~~L~~d~~l~~~~~~~~~~l~~~~~~~p~~~~v~~l--~~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p- 172 (243)
T 2fsq_A 96 RALPYWPQTLPLDTPIDAVTDYYRDRLSTFPTLPAFNMRVTGL--RPVGMVMKGATAEDDSIVALWRDTFADFFGYRHP- 172 (243)
T ss_dssp CSTTSSCTTSCTTCCHHHHHHHHHHHGGGCCCCCCCCEEEEEE--ETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCCT-
T ss_pred ccCCCCCccCcccchHHHHHHHHHHHHhcccCCCCeEEEEecc--ccceEEEecCCHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 1 121 2333444344455444443 7999999888 4666554221111111266899999997764222
Q ss_pred cccCCceeeehhhhhcCCCCCCCCchhHHHHHHHHHHHHHhhhccc--eeeeCeeeEE
Q 020850 239 QLYDPAILHTSFARLLGHPRASPTEPHQLRFLHELVDSLNNQIRGS--EAVVSELWYV 294 (320)
Q Consensus 239 Q~~d~~IlHtTLaRlL~pp~~~~~~~~~~~~~~a~c~~lt~~L~G~--~a~~~~lWfV 294 (320)
.+|....|.|||=++.++. . ++...++.+++++++++.+. .++++..=|+
T Consensus 173 -~hd~y~fHITLgY~~~~l~--~---ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc 224 (243)
T 2fsq_A 173 -DHDTYEFHITLSYIVSWFE--P---ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFC 224 (243)
T ss_dssp -TGGGCCEEEECEEESSCBC--G---GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEE
T ss_pred -CCcceEEEEEEEeccCCCC--H---HHHHHHHHHHHHHHHHHHhhCCeeeecCcceE
Confidence 2456999999999997653 3 55667899999999999773 3455554443
No 7
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=34.49 E-value=36 Score=29.27 Aligned_cols=54 Identities=11% Similarity=0.231 Sum_probs=38.5
Q ss_pred EEEeEEEEcCCCcEEEEeeecCCCChHHHHHHHHhhCCCCCccccc--CCceeeehh
Q 020850 196 IVLDRVILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLY--DPAILHTSF 250 (320)
Q Consensus 196 ~~ldRVvltsSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~--d~~IlHtTL 250 (320)
|-+-=.+++-.|++|+.++..+| +...+=+.+-+.+|..+.|++| |..++|-..
T Consensus 44 M~ilYa~VaRG~~VLae~t~~~g-nf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~ 99 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWCGG-NFLEVTEQILAKIPSENNKLTYSHGNYLFHYIC 99 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESSCB-SHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEEEcCCEEEEEeccCCC-CHHHHHHHHHhhCCCCCCceEEEECCEEEEEEE
Confidence 33444566778999999988766 6665555666666656678877 899999764
No 8
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=20.00 E-value=78 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=34.7
Q ss_pred EEcCCCcEEEEeeecCCCChHHHHHHHHhhCCCCCccccc--CCceeee
Q 020850 202 ILTSTGVLLGCWQVISGTDPMTIRAKLRTALPNAPEKQLY--DPAILHT 248 (320)
Q Consensus 202 vltsSGvLL~cwqv~~Gtep~~iR~~Lr~alP~AP~kQ~~--d~~IlHt 248 (320)
+++-.+++|+=+...+| +...|=+.+=+.+|..+.|++| |..++|-
T Consensus 8 ~VArg~~iLae~t~~~g-nf~~ia~~iL~kip~~~~k~s~~~~~y~fHy 55 (189)
T 4b93_A 8 VVARGTTILAKHAWCGG-NFLEVTEQILAKIPSENNKLTYSHGNYLFHY 55 (189)
T ss_dssp EEEETTEEEEEEESSEE-CHHHHHHHHHTTCCSSSEEEEEEETTEEEEE
T ss_pred EEEeCCEEEEeCCCCCC-CHHHHHHHHHHhCCCCCCeEEEEECCEEEEE
Confidence 45666677766655555 7777777787888988889887 9999994
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=18.62 E-value=24 Score=28.91 Aligned_cols=27 Identities=19% Similarity=0.528 Sum_probs=16.4
Q ss_pred cceeeccCCCceeehhHHHHHHHHHHH
Q 020850 10 TRCHWWSHTKTVTLIWFISFVLFYSFF 36 (320)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (320)
.|-.||.|+|..+++-++.++++|.++
T Consensus 88 ~rkmwwkn~K~~iii~~iv~iii~iIi 114 (119)
T 2kog_A 88 KRKYWWKNLKMMIILGVICAIILIIII 114 (119)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466799999876554444444444443
No 10
>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} SCOP: b.37.1.1 d.212.1.1 PDB: 2x9a_B 3qdr_A* 3qdp_A* 1s62_A
Probab=18.45 E-value=69 Score=29.19 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHHHHHhhcC--cc----EEEEeEEEEcCCCcEEEEeeecCCCChH----HHHHHHHhhCCCCCcccccC
Q 020850 173 TEDEIEAEATAVRAVAEDLC--PL----KIVLDRVILTSTGVLLGCWQVISGTDPM----TIRAKLRTALPNAPEKQLYD 242 (320)
Q Consensus 173 t~~ei~~E~~av~~v~~~~c--Pi----~~~ldRVvltsSGvLL~cwqv~~Gtep~----~iR~~Lr~alP~AP~kQ~~d 242 (320)
...++..-..+|++.+.+.= |- .-+.-||.|.++|.|+..-.+ +| +++ .+|+..|..||-.|..+.||
T Consensus 125 ~~a~~~~Y~a~Ira~Iqr~~~~pa~~~G~~v~Vrf~L~pdG~Vlsv~V~-SG-d~aLD~AAl~AVrrApfP~PP~~~vye 202 (222)
T 1tol_A 125 SGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPE-GG-DPALCQAALAAAKLAKIPKPPSQAVYE 202 (222)
T ss_dssp CCHHHHHHHHHHHHHHHTTCTTGGGGTTCCEEEEEEECTTSCEEEEEEE-EE-CHHHHHHHHHHHHHCCCCCCSCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCCchhcCCCEEEEEEEECCCCCEEEEEec-CC-CHHHHHHHHHHHHhCCCCcCCchHHHH
Confidence 44556666677777666631 11 146678999999999987444 77 432 33333333466666444443
Done!