Query 020851
Match_columns 320
No_of_seqs 168 out of 330
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:39:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02642 R3H_encore_like R3H do 99.9 1.5E-21 3.2E-26 147.5 7.9 63 22-87 1-63 (63)
2 PF01424 R3H: R3H domain; Int 99.6 2.6E-15 5.7E-20 111.6 6.6 62 23-87 2-63 (63)
3 cd06006 R3H_unknown_2 R3H doma 99.5 1.7E-14 3.7E-19 108.9 7.2 58 27-86 2-59 (59)
4 cd02636 R3H_sperm-antigen R3H 99.5 3.1E-14 6.7E-19 108.3 6.8 57 28-86 3-60 (61)
5 smart00393 R3H Putative single 99.5 1.3E-14 2.7E-19 113.2 4.5 72 13-87 8-79 (79)
6 cd02646 R3H_G-patch R3H domain 99.5 5.7E-14 1.2E-18 104.6 6.4 58 26-86 1-58 (58)
7 cd02325 R3H R3H domain. The na 99.5 7.7E-14 1.7E-18 99.0 6.7 59 26-86 1-59 (59)
8 cd02641 R3H_Smubp-2_like R3H d 99.5 1E-13 2.3E-18 104.4 6.9 58 27-86 2-60 (60)
9 cd02643 R3H_NF-X1 R3H domain o 99.4 4.9E-13 1.1E-17 104.4 6.2 67 16-85 4-73 (74)
10 PF12752 SUZ: SUZ domain; Int 99.4 5.9E-13 1.3E-17 99.9 5.2 46 105-150 2-59 (59)
11 cd02640 R3H_NRF R3H domain of 99.3 5.5E-12 1.2E-16 95.4 6.6 57 28-86 3-60 (60)
12 cd06007 R3H_DEXH_helicase R3H 99.3 7.2E-12 1.6E-16 94.6 6.3 56 28-86 3-59 (59)
13 KOG2953 mRNA-binding protein E 99.1 6.8E-11 1.5E-15 117.9 6.2 156 6-164 94-270 (432)
14 cd02644 R3H_jag R3H domain fou 99.0 1.2E-09 2.5E-14 84.1 6.8 60 24-86 6-66 (67)
15 cd02645 R3H_AAA R3H domain of 98.7 4.2E-08 9.1E-13 74.4 7.4 40 46-85 20-59 (60)
16 cd02638 R3H_unknown_1 R3H doma 98.5 2.5E-07 5.5E-12 70.9 6.1 57 28-85 3-60 (62)
17 cd02639 R3H_RRM R3H domain of 98.2 6.5E-07 1.4E-11 68.1 2.1 56 29-86 4-60 (60)
18 COG1847 Jag Predicted RNA-bind 97.8 4.6E-05 1E-09 70.6 7.3 59 25-86 148-207 (208)
19 KOG1952 Transcription factor N 96.4 0.0037 8.1E-08 67.8 4.5 80 5-87 804-887 (950)
20 cd02637 R3H_PARN R3H domain of 95.5 0.058 1.2E-06 41.7 6.4 56 29-87 4-63 (65)
21 PF08110 Antimicrobial15: Ocel 52.0 11 0.00023 23.1 1.5 12 288-299 7-18 (19)
22 KOG4060 Uncharacterized conser 28.3 30 0.00065 31.6 1.2 26 46-72 61-86 (176)
23 PF06262 DUF1025: Possibl zinc 26.2 40 0.00086 28.0 1.5 16 57-72 75-90 (97)
24 PF05572 Peptidase_M43: Pregna 23.4 49 0.0011 29.1 1.6 22 52-73 66-87 (154)
25 cd01611 GABARAP Ubiquitin doma 22.5 78 0.0017 26.8 2.6 18 127-144 3-20 (112)
26 PRK09430 djlA Dna-J like membr 21.9 2.3E+02 0.005 27.2 5.9 22 51-72 145-166 (267)
27 PF12206 DUF3599: Domain of un 21.8 9.1 0.0002 33.2 -3.1 18 54-72 2-19 (117)
28 KOG3379 Diadenosine polyphosph 21.3 1E+02 0.0022 27.8 3.2 37 109-145 102-150 (150)
No 1
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.85 E-value=1.5e-21 Score=147.45 Aligned_cols=63 Identities=37% Similarity=0.712 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851 22 SKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC 87 (320)
Q Consensus 22 DR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt 87 (320)
||+|||+||++|..||+++.. ..++|||||||+|+|||+||+||||.|+|+|+| +|+|+|.||
T Consensus 1 dr~~~l~~E~~i~~Fi~~~~~--~~~~f~pm~sy~RllvH~la~~~gL~s~s~~~~-~r~vvv~kt 63 (63)
T cd02642 1 DRLFVLKLEKDLLAFIKDSTR--QSLELPPMNSYYRLLAHRVAQYYGLDHNVDNSG-GKCVIVNKT 63 (63)
T ss_pred CchHHHHHHHHHHHHHhCCCC--CeeEcCCCCcHHHHHHHHHHHHhCCeeEeecCC-ceEEEEEeC
Confidence 799999999999999999953 469999999999999999999999999999988 899999986
No 2
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=99.59 E-value=2.6e-15 Score=111.64 Aligned_cols=62 Identities=32% Similarity=0.680 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851 23 KHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC 87 (320)
Q Consensus 23 R~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt 87 (320)
|..|+++++++++|+.++.. ++.|||||+|+|++||++|++|||.|.|.|+|+.|+|+|+|+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~---~~~f~pm~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k~ 63 (63)
T PF01424_consen 2 REELEKIEEKLIEFFLSSGE---SLEFPPMNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSKT 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCSS---EEEEEC--SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEES
T ss_pred hHHHHHHHHHHHHHHHcCCC---EEEECCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEeC
Confidence 57899999999999977663 699999999999999999999999999999999999999985
No 3
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.54 E-value=1.7e-14 Score=108.94 Aligned_cols=58 Identities=28% Similarity=0.485 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 27 LSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 27 LkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
.++|+.|..||+|... .++.|||||+++|.+||+||++|||.++|+|.+++|+|+|.|
T Consensus 2 ~~~E~~l~~fv~d~~~--~~~~f~pM~~~~R~~vHdla~~~gl~SeS~d~Ep~R~V~v~k 59 (59)
T cd06006 2 QQIESTLRKFINDKSK--RSLRFPPMRSPQRAFIHELAKDYGLYSESQDPEPKRSVFVKK 59 (59)
T ss_pred hhHHHHHHHHHhCCCC--CceeCCCCCHHHHHHHHHHHHHcCCeeEecCCCCCcEEEEeC
Confidence 3789999999999854 469999999999999999999999999999999999999975
No 4
>cd02636 R3H_sperm-antigen R3H domain of a group of metazoan proteins that is related to the sperm-associated antigen 7. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.51 E-value=3.1e-14 Score=108.32 Aligned_cols=57 Identities=32% Similarity=0.570 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccC-CceEEEEec
Q 020851 28 SMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEG-VDRHLILER 86 (320)
Q Consensus 28 kLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG-~dR~VVV~K 86 (320)
++|+.+..||+|+.. ..++|||||+|+|.+||++|+..||.++|+|+| ++|+|||++
T Consensus 3 ~~e~~~~~f~~d~~~--~~~~l~pM~~~eRkivHDv~~~~Gl~S~S~Geee~~R~VVv~~ 60 (61)
T cd02636 3 SMEKEVSKFIKDSVR--TREKFQPMDKVERSIVHDVAEVAGLTSFSFGEDEVDRYVMIFK 60 (61)
T ss_pred hHHHHHHHHhhcccc--cccccCCCCHHHHHHHHHHHHhcCceeEecCCCCCceEEEEec
Confidence 689999999999864 458999999999999999999999999999975 999999986
No 5
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=99.51 E-value=1.3e-14 Score=113.22 Aligned_cols=72 Identities=26% Similarity=0.525 Sum_probs=64.5
Q ss_pred HHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEecc
Q 020851 13 AFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERC 87 (320)
Q Consensus 13 ~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Kt 87 (320)
.+...-.++.+.+|.+++.++.+|+.... ..+.|||||+|+|.+||++|+.|||.|.|.|+|+.|+|+|.+.
T Consensus 8 ~d~~~~~~~~~~~l~~~~~~~~~~v~~~~---~~~~~~pm~~~~R~~iH~~a~~~~l~s~S~g~g~~R~vvv~~~ 79 (79)
T smart00393 8 LDALSYRPRRREELIELELEIARFVKSTK---ESVELPPMNSYERKIVHELAEKYGLESESFGEGPKRRVVISKK 79 (79)
T ss_pred EECCccCHHHHHHHHHHHHHHHHHHhccC---CeEEcCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeC
Confidence 34444578899999999999999999876 3599999999999999999999999999999999999999863
No 6
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.49 E-value=5.7e-14 Score=104.61 Aligned_cols=58 Identities=26% Similarity=0.543 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 26 VLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 26 LLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
|..++++|..|+.++. ..+.||||++++|.+||++|+.|||.+.|.|.|+.|+|+|+|
T Consensus 1 ~~~i~~~i~~F~~~~~---~~~~fppm~~~~R~~vH~lA~~~~L~S~S~G~g~~R~v~v~k 58 (58)
T cd02646 1 IEDIKDEIEAFLLDSR---DSLSFPPMDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVTK 58 (58)
T ss_pred ChHHHHHHHHHHhCCC---ceEecCCCCHHHHHHHHHHHHHcCCcccccccCCceEEEEEC
Confidence 3578999999999985 469999999999999999999999999999999999999986
No 7
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.48 E-value=7.7e-14 Score=99.02 Aligned_cols=59 Identities=41% Similarity=0.688 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 26 VLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 26 LLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
+.++|+.|..|+++... ..+.|||||+|+|++||++|++|||.+.|.|.|+.|+|+|.+
T Consensus 1 ~~~~~~~l~~f~~~~~~--~~~~~~p~~~~~R~~vH~la~~~~L~s~s~g~~~~r~v~i~~ 59 (59)
T cd02325 1 REEREEELEAFAKDAAG--KSLELPPMNSYERKLIHDLAEYYGLKSESEGEGPNRRVVITK 59 (59)
T ss_pred ChHHHHHHHHHHHhhcC--CeEEcCCCCHHHHHHHHHHHHHCCCEEEEecCCCCcEEEEeC
Confidence 36789999999999953 459999999999999999999999999999999999999874
No 8
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=99.47 E-value=1e-13 Score=104.42 Aligned_cols=58 Identities=36% Similarity=0.669 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 27 LSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 27 LkLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
.++++.|..|++++.. ..+.||| ||+++|.+||+||+.|||.|.|.|.|++|+|+|.|
T Consensus 2 ~~~~~~i~~F~~~~~~--~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02641 2 KHLKAMVKAFMKDPKA--TELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSDRVITVSK 60 (60)
T ss_pred hhHHHHHHHHHcCCCc--CcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCceEEEeeC
Confidence 4679999999999874 3599999 99999999999999999999999999999999975
No 9
>cd02643 R3H_NF-X1 R3H domain of the X1 box binding protein (NF-X1) and related proteins. Human NF-X1 is a transcription factor that regulates the expression of class II major histocompatibility complex (MHC) genes. The Drosophila homolog shuttle craft (STC) has been shown to be a DNA- or RNA-binding protein required for proper axon guidance in the central nervous system and, the yeast homolog FAP1 encodes a dosage suppressor of rapamycin toxicity. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.40 E-value=4.9e-13 Score=104.39 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=58.0
Q ss_pred HhcCcchhHHHHHHHHHHHHHhhCCCC---CCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEe
Q 020851 16 VKDNLPSKHLVLSMEEALVNFLQDDNS---ADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILE 85 (320)
Q Consensus 16 LK~NprDR~fLLkLEedIi~FIqds~~---~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~ 85 (320)
.++||. |+.++|+.|..|+.+... +...+.|||||+|+|.+||++|++|||.++|.|+|+.|+|||+
T Consensus 4 ~~~~~~---~~~~vE~~l~~la~~~~~~~~~~~~~~l~PM~~~eR~iIH~la~~~~l~S~S~G~ep~R~VvI~ 73 (74)
T cd02643 4 AKKDPK---FVKDVEKDLIELVESVNKGKQTSRSHSFPPMNREKRRIVHELAEHFGIESVSYDQEPKRNVVAT 73 (74)
T ss_pred HHHCHH---HHHHHHHHHHHHHHHHHhccccCCeeECCCCCHHHHHHHHHHHhhCCCEEEecCCCCCceEEEe
Confidence 445665 999999999999997421 1236999999999999999999999999999999999999986
No 10
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=99.38 E-value=5.9e-13 Score=99.87 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=36.1
Q ss_pred CCcceeeecCCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHHhhccCCC
Q 020851 105 TTSHQILRRKEAPPV------------LKIQSPSGEHSLAEREAAYLAARERIFSMDA 150 (320)
Q Consensus 105 ~p~~kIMrR~~~~~d------------~k~~~~~~~kSlEEREeeY~rAReRIF~~~~ 150 (320)
.|+++||||+..... .........+|+||||++|++||+|||++++
T Consensus 2 ~p~~~IlkRp~~~~~~~~~~~~~~~~~~~~~~~~~~kSlEERE~eY~~AR~RIFg~~~ 59 (59)
T PF12752_consen 2 KPKRKILKRPSKGSSSSDSGSSGSSPNSSSRKKRPSKSLEEREAEYAEARARIFGSSE 59 (59)
T ss_pred CCCCeEecCCCCCCCcccccccccCCCcccccccccCCHHHHHHHHHHHHHHHhCCCC
Confidence 468999999754321 1224578999999999999999999999864
No 11
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.30 E-value=5.5e-12 Score=95.44 Aligned_cols=57 Identities=25% Similarity=0.540 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 28 SMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 28 kLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
.+++.|.+|+++... ..+.||| |++++|.+||++|..+||.|.|.|.|.+|+|+|+|
T Consensus 3 ~~~~~i~~F~~s~~~--~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~k 60 (60)
T cd02640 3 DYRQIIQNYAHSDDI--RDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGNDRYLVISK 60 (60)
T ss_pred hHHHHHHHHHcCCcc--ceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCCeEEEEeC
Confidence 468899999998854 3599999 99999999999999999999999999999999975
No 12
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=99.28 E-value=7.2e-12 Score=94.58 Aligned_cols=56 Identities=27% Similarity=0.511 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 28 SMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 28 kLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
.+++.|.+|++++ . ..+.||| |++++|.+||++|..+||.|.|.|.|.+|+|+|.|
T Consensus 3 ~i~~~i~~F~~~~-~--~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~g~~R~v~v~K 59 (59)
T cd06007 3 AINKALEDFRASD-N--EEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGKGSNRRLSVYK 59 (59)
T ss_pred cHHHHHHHHHcCc-c--cEEEcCCCCCHHHHHHHHHHHHHcCCCceeecCCCCeEEEEeC
Confidence 5788999999988 3 3599999 99999999999999999999999999999999976
No 13
>KOG2953 consensus mRNA-binding protein Encore [RNA processing and modification]
Probab=99.12 E-value=6.8e-11 Score=117.89 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=113.9
Q ss_pred cchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCC-ChHHHHHHHHHHHHhCCeeeecc------cCC
Q 020851 6 FAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPM-DSYNRLLLHRLADIFGFAHESVG------EGV 78 (320)
Q Consensus 6 ~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPM-NSY~RlLVHRlAeyfGL~h~S~G------eG~ 78 (320)
....-|+++.+ +|||.|..|+++|.+|.+|+++...++ .+||+. .+|.|++.|++|+.|||...... ++.
T Consensus 94 ~~~dy~~ve~~-qnpR~~~~lsR~El~~~~~~Q~~~~qq--t~~q~~~ts~~~~~~~rvaq~y~l~T~~~p~~~~~~~p~ 170 (432)
T KOG2953|consen 94 QAVDYFLVEAL-QNPRHRLTLSRKELDIQCQFQGPVQQQ--TEFQNYPTSYLRLAAHRVAQHYGLATTGEPSYISGIDPY 170 (432)
T ss_pred hcccHHHHhhh-hcchhhhhhhcccchhhhhhcCccccc--ccCCCccccchhhhhcccccccccccccccccccccCch
Confidence 34556899999 589999999999999999999998644 999998 89999999999999998877532 333
Q ss_pred ceEEEEeccCCcce------eeeccCCCCC--CCCCcceeeecCCCCCCC--CC---CCCCCCCCHHHHHHHHHHHHHhh
Q 020851 79 DRHLILERCSETSI------DILWQYGEPQ--SLTTSHQILRRKEAPPVL--KI---QSPSGEHSLAEREAAYLAARERI 145 (320)
Q Consensus 79 dR~VVV~Ktp~Tri------di~~~~de~~--~~~p~~kIMrR~~~~~d~--k~---~~~~~~kSlEEREeeY~rAReRI 145 (320)
...+++.|+-+.+. ++..+.+..+ .+..++.|--|+.....- +. .......|.|||+++|..||.||
T Consensus 171 eqR~l~~k~~~s~~P~~~~~~~P~ssp~~~~~~~~~~~~~sp~p~~g~G~~~~~p~~~~~~~~~S~~~~kq~yd~~r~r~ 250 (432)
T KOG2953|consen 171 EQRILVTKTGESRFPGVSLSEIPVSSPSSNGWSEQRKGDISPRPTSGGGVSLSSPSNPQVTLLRSVEERKQEYDKARGRI 250 (432)
T ss_pred hccccccccccccCCchhhccccccCccccccccccccccCCCCCCCCcccccCCcCCCccccccchhhhhhhhhhhccc
Confidence 44566777655444 4444322222 333355677777644322 22 23347789999999999999999
Q ss_pred ccCCCCC-CCCccccccccc
Q 020851 146 FSMDART-VAEPVRQKPRSV 164 (320)
Q Consensus 146 F~~~~~~-~~e~~~~~~R~v 164 (320)
|+..... .+|+..+-++..
T Consensus 251 g~~~~~~~s~Dss~q~~p~~ 270 (432)
T KOG2953|consen 251 GSKPVTNDSKDSSSQQPPQN 270 (432)
T ss_pred cCccccccCcccccccCCcc
Confidence 9998874 566666666654
No 14
>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.99 E-value=1.2e-09 Score=84.12 Aligned_cols=60 Identities=23% Similarity=0.401 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhC-CeeeecccCCceEEEEec
Q 020851 24 HLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFG-FAHESVGEGVDRHLILER 86 (320)
Q Consensus 24 ~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfG-L~h~S~GeG~dR~VVV~K 86 (320)
..|..|.+.+.+.+.... .++.|+|||+|+|.+||++++.|+ |.++|.|+|+.|+|||..
T Consensus 6 ~~L~~~A~~~a~~v~~tg---~~~~l~PM~~~eRrivH~~~~~~~~l~T~S~G~~~~R~vvI~~ 66 (67)
T cd02644 6 ETLIRLAERAAEKVRRTG---KPVKLEPMNAYERRIIHDALANDEDVETESEGEGPYRRVVISP 66 (67)
T ss_pred HHHHHHHHHHHHHHHHHC---CeeEeCCCCHHHHHHHHHHHHhCCCceEEeecCCCCeEEEEEe
Confidence 367788888888888876 359999999999999999999876 999999999999999974
No 15
>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.
Probab=98.73 E-value=4.2e-08 Score=74.42 Aligned_cols=40 Identities=33% Similarity=0.474 Sum_probs=38.5
Q ss_pred ceecCCCChHHHHHHHHHHHHhCCeeeecccCCceEEEEe
Q 020851 46 VLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRHLILE 85 (320)
Q Consensus 46 slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~ 85 (320)
.++|.|||+|.|.++|++++.|||.++|.|+|+.|+|+|.
T Consensus 20 ~veL~Pm~~~eRri~H~~v~~~~l~s~S~G~ep~RrvvI~ 59 (60)
T cd02645 20 PVELLPRSAYIRRLQHDLVERYQLRSESFGSEPNRRLRIL 59 (60)
T ss_pred eEEcCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcEEEEe
Confidence 4999999999999999999999999999999999999985
No 16
>cd02638 R3H_unknown_1 R3H domain of a group of eukaryotic proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.51 E-value=2.5e-07 Score=70.91 Aligned_cols=57 Identities=32% Similarity=0.420 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHH-HhCCeeeecccCCceEEEEe
Q 020851 28 SMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD-IFGFAHESVGEGVDRHLILE 85 (320)
Q Consensus 28 kLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAe-yfGL~h~S~GeG~dR~VVV~ 85 (320)
.+.+++.-|++..... ..+.|+|||+|+|.+||...+ +-++.+.|.|+|+.|+|||.
T Consensus 3 ~~~~~~~~f~~~~~~~-r~v~LePM~~~ERkIIH~~Lq~~~~v~T~S~G~ep~RrVVI~ 60 (62)
T cd02638 3 RVSEELEIFLLSFQRY-RVLLFPPLNSRRRYLIHQTVENRFLLSTFSVGEGWARRTVVC 60 (62)
T ss_pred hhHHHHHHHHHhcccC-CeEecCCCChHHHHHHHHHHhcCCCceEEEccCCCCcEEEEe
Confidence 3567778899877532 469999999999999999775 45899999999999999985
No 17
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.21 E-value=6.5e-07 Score=68.05 Aligned_cols=56 Identities=25% Similarity=0.407 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEec
Q 020851 29 MEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILER 86 (320)
Q Consensus 29 LEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~K 86 (320)
+-.++.-|..+... ..+.||| .++.+|.+||.+|..+||.|.|.|.|..|.|+|+|
T Consensus 4 ~YsqlllFkdd~~~--~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~g~~R~v~v~k 60 (60)
T cd02639 4 IYSQLLLFKDDRMR--DELAFPSSLSPAERRIVHLLASRLGLNHVSDGTGERRQVQITK 60 (60)
T ss_pred ceeeEEEEecCCCc--eEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCCCceEEEeecC
Confidence 33445567777764 4599999 59999999999999999999999999999998875
No 18
>COG1847 Jag Predicted RNA-binding protein [General function prediction only]
Probab=97.84 E-value=4.6e-05 Score=70.61 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh-CCeeeecccCCceEEEEec
Q 020851 25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF-GFAHESVGEGVDRHLILER 86 (320)
Q Consensus 25 fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf-GL~h~S~GeG~dR~VVV~K 86 (320)
.|.+|.+.+-+-+.... .++.|+||+||+|.+||..-..+ |+.++|.|+|+.|+|||..
T Consensus 148 ~L~~LA~~~A~rV~~tg---~~v~L~pM~~~ERkIVH~~l~~~~~V~T~SeG~ep~R~vVV~~ 207 (208)
T COG1847 148 TLIKLAERAAERVLETG---RSVELEPMPPFERKIVHTALSANPGVETYSEGEEPNRRVVVRP 207 (208)
T ss_pred HHHHHHHHHHHHHHhhC---CeeecCCCCHHHHHHHHHHHHhcCCcceeecCCCCceEEEEec
Confidence 67777777777776655 46999999999999999987555 9999999999999999964
No 19
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=96.35 E-value=0.0037 Score=67.81 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=66.6
Q ss_pred ccchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCC----CcceecCCCChHHHHHHHHHHHHhCCeeeecccCCce
Q 020851 5 QFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSA----DGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDR 80 (320)
Q Consensus 5 ~~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~----~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR 80 (320)
.+.+.++|.+..+.+++ |+..+|+++..|+...... ..+..||||+-..|.+||.+|+.|+|...+.+..+.|
T Consensus 804 ~~~~~e~~~e~~r~~~~---f~~sv~~e~~~lv~~~~~~~~~~~k~~~~p~ms~~~rr~vh~~~e~~~l~~~sa~~~pkr 880 (950)
T KOG1952|consen 804 LSKFSESLKEDARKDLK---FVKSVEKELEFLVELVKRGKNYSKKSHSFPPMSRDKRRLVHELAEVFGLESVSADSEPKR 880 (950)
T ss_pred hhhhhHHHHHHHHhchh---hhccchhhhHHHHHHHhhcccccccccccCchhHHHHHHHHhhhhccCCcccccCCCccc
Confidence 45678888888887776 9999999998888764311 1357899999999999999999999999999877889
Q ss_pred EEEEecc
Q 020851 81 HLILERC 87 (320)
Q Consensus 81 ~VVV~Kt 87 (320)
.+|++..
T Consensus 881 ~~v~t~i 887 (950)
T KOG1952|consen 881 NVVVTAI 887 (950)
T ss_pred ceeeEee
Confidence 9999865
No 20
>cd02637 R3H_PARN R3H domain of Poly(A)-specific ribonuclease (PARN). PARN is a poly(A)-specific 3' exonuclease from the RNase D family that, in Xenopus, deadenylates a specific class of maternal mRNAs which results in their translational repression. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=95.45 E-value=0.058 Score=41.70 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh---CCeeeecc-cCCceEEEEecc
Q 020851 29 MEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF---GFAHESVG-EGVDRHLILERC 87 (320)
Q Consensus 29 LEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf---GL~h~S~G-eG~dR~VVV~Kt 87 (320)
+.+.+.+|+++.. ..+.++|||+|+|.|++...... |+.-++.. +...+.|++.+.
T Consensus 4 v~~~i~~fl~s~~---~~l~le~cngf~RkLiyq~l~~~~~~~I~ve~~~~ekk~~~i~~~k~ 63 (65)
T cd02637 4 VIERIEAFLESEE---DDLELEPCNGFQRKLIYQTLEQKYPKGIHVETLETEKKERLIVIEKG 63 (65)
T ss_pred HHHHHHHHHhcCc---ccccccccccHHHHHHHHHHHHHccccceeeeeeccccceEEEEeec
Confidence 4567888999874 34999999999999999888664 34444433 555677777765
No 21
>PF08110 Antimicrobial15: Ocellatin family; InterPro: IPR012518 This family consists of the ocellatin family of antimicrobial peptides. Ocellatins are produced from the electrical-stimulated skin secretions of the South American frog, Leptodactylus ocellatus (Argus frog). The family consists of three structurally related peptides, ocellatin 1, ocellatin 2 and ocellatin 3. These peptides present haemolytic activity against human erythrocytes and are also active against Escherichia coli [].; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region
Probab=51.96 E-value=11 Score=23.06 Aligned_cols=12 Identities=67% Similarity=0.808 Sum_probs=10.7
Q ss_pred hhHHHHHHHHhC
Q 020851 288 GAAKRLFAHALG 299 (320)
Q Consensus 288 gaakrmfahal~ 299 (320)
||||.+.||+-+
T Consensus 7 ~AaK~l~~H~a~ 18 (19)
T PF08110_consen 7 GAAKDLLAHAAE 18 (19)
T ss_pred hHHHHHHHHHhc
Confidence 899999999864
No 22
>KOG4060 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.33 E-value=30 Score=31.60 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.3
Q ss_pred ceecCCCChHHHHHHHHHHHHhCCeee
Q 020851 46 VLELEPMDSYNRLLLHRLADIFGFAHE 72 (320)
Q Consensus 46 slefpPMNSY~RlLVHRlAeyfGL~h~ 72 (320)
-++|+.+-||+| .||.+|++++|+-+
T Consensus 61 gyD~~~lEsYq~-yvH~la~~l~~~V~ 86 (176)
T KOG4060|consen 61 GYDMTLLESYQQ-YVHNLANSLSIKVE 86 (176)
T ss_pred ecccchHHHHHH-HHHHHHHHcCceeE
Confidence 378888999997 68999999999855
No 23
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=26.20 E-value=40 Score=27.99 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhCCeee
Q 020851 57 RLLLHRLADIFGFAHE 72 (320)
Q Consensus 57 RlLVHRlAeyfGL~h~ 72 (320)
.-+||++|.|||+.-+
T Consensus 75 ~tlvhEiah~fG~~~e 90 (97)
T PF06262_consen 75 DTLVHEIAHHFGISDE 90 (97)
T ss_dssp HHHHHHHHHHTT--HH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4679999999998754
No 24
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=23.38 E-value=49 Score=29.11 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHhCCeeee
Q 020851 52 MDSYNRLLLHRLADIFGFAHES 73 (320)
Q Consensus 52 MNSY~RlLVHRlAeyfGL~h~S 73 (320)
....-|.|+|+|.-|+||-|.-
T Consensus 66 ~~~~g~TltHEvGH~LGL~HtF 87 (154)
T PF05572_consen 66 QYNFGKTLTHEVGHWLGLYHTF 87 (154)
T ss_dssp TS-SSHHHHHHHHHHTT---TT
T ss_pred ccccccchhhhhhhhhcccccc
Confidence 3556799999999999999985
No 25
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=22.55 E-value=78 Score=26.81 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 020851 127 GEHSLAEREAAYLAARER 144 (320)
Q Consensus 127 ~~kSlEEREeeY~rAReR 144 (320)
...|+|+|.+++++.|++
T Consensus 3 ~~~s~e~R~~e~~~ir~k 20 (112)
T cd01611 3 ERHPFEKRKAEVERIRAK 20 (112)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 457999999999999976
No 26
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.87 E-value=2.3e+02 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred CCChHHHHHHHHHHHHhCCeee
Q 020851 51 PMDSYNRLLLHRLADIFGFAHE 72 (320)
Q Consensus 51 PMNSY~RlLVHRlAeyfGL~h~ 72 (320)
.++++++-+++++|+++|+.|.
T Consensus 145 ~l~~~E~~~L~~Ia~~Lgis~~ 166 (267)
T PRK09430 145 SLHPNERQVLYVIAEELGFSRF 166 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5789999999999999999984
No 27
>PF12206 DUF3599: Domain of unknown function (DUF3599); InterPro: IPR024556 This family of bacterial proteins includes phage-like element PBSX protein xkdH from Bacillus subtilis. The function of the family is unknown.; PDB: 3F3B_A.
Probab=21.81 E-value=9.1 Score=33.16 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHhCCeee
Q 020851 54 SYNRLLLHRLADIFGFAHE 72 (320)
Q Consensus 54 SY~RlLVHRlAeyfGL~h~ 72 (320)
||++||+|||. .|+|...
T Consensus 2 Syq~mL~hrCD-IYHl~~~ 19 (117)
T PF12206_consen 2 SYQRMLTHRCD-IYHLEQK 19 (117)
T ss_dssp -------EEEE-EE--EEE
T ss_pred CHHHhhhcccc-ccchhhh
Confidence 79999999975 8888543
No 28
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=21.28 E-value=1e+02 Score=27.77 Aligned_cols=37 Identities=27% Similarity=0.122 Sum_probs=28.8
Q ss_pred eeeecCCCCCC------------CCCCCCCCCCCHHHHHHHHHHHHHhh
Q 020851 109 QILRRKEAPPV------------LKIQSPSGEHSLAEREAAYLAARERI 145 (320)
Q Consensus 109 kIMrR~~~~~d------------~k~~~~~~~kSlEEREeeY~rAReRI 145 (320)
-||.|...++. .+...+++.+|+||+++|-+.-|+.+
T Consensus 102 HIlPR~~gDf~~Nd~IY~~L~~~~~e~~~r~~Rs~eEM~eEA~~lr~~~ 150 (150)
T KOG3379|consen 102 HILPRKAGDFGDNDLIYDELDKHEKELEDRKPRSLEEMAEEAQRLREYF 150 (150)
T ss_pred EEccccccccccchHHHHHHHhcccccccCCcchHHHHHHHHHHHHhhC
Confidence 49999887761 12337889999999999998888764
Done!