Query 020851
Match_columns 320
No_of_seqs 168 out of 330
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:06:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1whr_A Hypothetical KIAA1002 p 100.0 3.5E-30 1.2E-34 217.3 11.9 112 2-117 9-124 (124)
2 2cpm_A Sperm-associated antige 99.1 1.2E-10 4.1E-15 94.0 8.5 64 24-89 11-75 (94)
3 1msz_A DNA-binding protein smu 99.1 1.4E-10 4.6E-15 92.7 6.9 63 25-90 17-80 (86)
4 3gku_A Probable RNA-binding pr 97.9 8.2E-06 2.8E-10 74.9 5.3 60 25-87 149-209 (225)
5 1ug8_A Poly(A)-specific ribonu 97.2 0.00079 2.7E-08 53.8 7.1 66 20-87 7-76 (87)
6 3d45_A Poly(A)-specific ribonu 64.9 1.3 4.6E-05 44.2 0.0 66 20-87 170-239 (507)
7 2a1r_A Poly(A)-specific ribonu 63.9 1.4 4.9E-05 43.1 0.0 43 21-65 176-218 (430)
8 2fph_X YLMH; division protein, 37.1 92 0.0032 26.4 7.0 60 20-84 8-70 (165)
9 3e11_A Predicted zincin-like m 22.7 34 0.0012 27.8 1.7 16 57-72 92-107 (114)
10 1hlv_A CENP-B, major centromer 15.9 54 0.0018 25.4 1.4 44 25-72 73-116 (131)
No 1
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=99.96 E-value=3.5e-30 Score=217.33 Aligned_cols=112 Identities=27% Similarity=0.454 Sum_probs=95.4
Q ss_pred CccccchHHHHHHHHhcCcchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCceE
Q 020851 2 STTQFAMVEELAFLVKDNLPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVDRH 81 (320)
Q Consensus 2 ~~t~~~l~efL~~~LK~NprDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~dR~ 81 (320)
|++|+++.+||+++|++||+||+|||+||++|++||+++.+ +.++|||||||+|||||+||+||||+|.++++| ++
T Consensus 9 d~~~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~--~~~ef~pmnSy~RllvHrvAe~ygL~h~~d~~~--r~ 84 (124)
T 1whr_A 9 DSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNN--QFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG--KA 84 (124)
T ss_dssp CCCCSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSC--CEEECCCCCHHHHHHHHHHHHHHTCCEEECSSC--SS
T ss_pred cCCCCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCc--cceECCCCCHHHHHHHHHHHHHhCcCccccCCC--CE
Confidence 78999999999999999999999999999999999999975 459999999999999999999999999987654 99
Q ss_pred EEEeccCCcce-eeecc---CCCCCCCCCcceeeecCCCC
Q 020851 82 LILERCSETSI-DILWQ---YGEPQSLTTSHQILRRKEAP 117 (320)
Q Consensus 82 VVV~Ktp~Tri-di~~~---~de~~~~~p~~kIMrR~~~~ 117 (320)
|+|+||+.|+| .+.++ .++.....++.+|+||++++
T Consensus 85 VvV~Kt~~tr~P~~~lse~~~~~~~~~~~~~~vl~r~~~~ 124 (124)
T 1whr_A 85 VIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILSGPSSG 124 (124)
T ss_dssp EEEECCTTCCCCSCCGGGTSCSCSCCCCCCSSCCCCCCCC
T ss_pred EEEEeCCCCCCChHHHHHHhcccccccchheeeEecCCCC
Confidence 99999999988 22222 12233335577899999763
No 2
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.2e-10 Score=93.98 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeeeecccCCc-eEEEEeccCC
Q 020851 24 HLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHESVGEGVD-RHLILERCSE 89 (320)
Q Consensus 24 ~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~S~GeG~d-R~VVV~Ktp~ 89 (320)
-|-.+.|+.|..|+++... +++.|+|||+|+|.+||.+++.|||.++|+|+|+. |+|||.+...
T Consensus 11 ~yR~~re~~L~~la~~~g~--~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~~ 75 (94)
T 2cpm_A 11 EFRKRMEKEVSDFIQDSGQ--IKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKEF 75 (94)
T ss_dssp HHHHHHHHHHHHHHHCSSC--CEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECSTT
T ss_pred HHHHHHHHHHHHHHHhcCC--CceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCCC
Confidence 3667889999999987763 34999999999999999999999999999999996 9999997643
No 3
>1msz_A DNA-binding protein smubp-2; R3H fold; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=99.10 E-value=1.4e-10 Score=92.68 Aligned_cols=63 Identities=29% Similarity=0.520 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceecCC-CChHHHHHHHHHHHHhCCeeeecccCCceEEEEeccCCc
Q 020851 25 LVLSMEEALVNFLQDDNSADGVLELEP-MDSYNRLLLHRLADIFGFAHESVGEGVDRHLILERCSET 90 (320)
Q Consensus 25 fLLkLEedIi~FIqds~~~~~slefpP-MNSY~RlLVHRlAeyfGL~h~S~GeG~dR~VVV~Ktp~T 90 (320)
..+.++..|..|+.+.. ..++||| +++++|++||.||+.|||.|.|.|+|.+|+|+|+|+..+
T Consensus 17 ~~~~i~~~l~~F~~~~~---~~l~FP~sLs~~eR~~IH~lA~~~GL~h~S~G~G~~R~l~V~k~~~~ 80 (86)
T 1msz_A 17 GVDHFRAMIVEFMASKK---MQLEFPPSLNSHDRLRVHQIAEEHGLRHDSSGEGKRRFITVSKRAGS 80 (86)
T ss_dssp CCHHHHHHHHHHHHHTC---SEEEECTTCCSHHHHHHHHHHHHTTEEEEEECSSSCCEEEEEECC--
T ss_pred hHHHHHHHHHHHhcCCC---cEEEcCCCCCHHHHHHHHHHHHHcCCCcceeeCCCCeEEEEEEeCCc
Confidence 45678999999996543 4599999 599999999999999999999999999999999998643
No 4
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=97.93 E-value=8.2e-06 Score=74.86 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHh-CCeeeecccCCceEEEEecc
Q 020851 25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIF-GFAHESVGEGVDRHLILERC 87 (320)
Q Consensus 25 fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyf-GL~h~S~GeG~dR~VVV~Kt 87 (320)
.|..|.+.+.+-|.... .++.|+|||+|+|.+||...+.+ |+.++|.|+|+.|+|||...
T Consensus 149 ~L~~lA~~~A~kV~~tg---~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGeep~R~VVI~~~ 209 (225)
T 3gku_A 149 TLETLAKNIAYKVKRTK---RSVSLEPMNPYERRIIHAALQNDKYVVTRSDGEEPFRHVIISLK 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHC---SCEECCCCCHHHHHHHHHHTTTCSSEEEEEESSTTSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhC---CEEEccCCCHHHHHHHHHHHccCCCcEEEEeecCCCeEEEEEEc
Confidence 56666666666666655 35999999999999999987665 99999999999999999744
No 5
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=97.23 E-value=0.00079 Score=53.81 Aligned_cols=66 Identities=21% Similarity=0.420 Sum_probs=48.6
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHH-h-CCeee-ecc-cCCceEEEEecc
Q 020851 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADI-F-GFAHE-SVG-EGVDRHLILERC 87 (320)
Q Consensus 20 prDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAey-f-GL~h~-S~G-eG~dR~VVV~Kt 87 (320)
+.++.||-.+-..|.+|++++.. ..+.++|+|+|+|.||+..+.. | +..|. +.- +...+.|++.+.
T Consensus 7 ~e~k~~id~i~~kIe~FL~s~~~--~~l~l~pCN~f~RkLIYQ~~~~kfp~~i~vet~~~e~~~~~ivv~~~ 76 (87)
T 1ug8_A 7 GDQKKFIDQVIEKIEDFLQSEEK--RSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC--CEEECCCCCSHHHHHHHHHHHHHSSSSEEEEEECCSSSCSEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHhCCCC--CceecCCchHHHHHHHHHHHHHhcCCceEEEEEecCCceEEEEEEec
Confidence 45678999999999999999874 3599999999999999998744 4 33333 222 444556666543
No 6
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=64.91 E-value=1.3 Score=44.18 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHH--HhCCeeeec--ccCCceEEEEecc
Q 020851 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD--IFGFAHESV--GEGVDRHLILERC 87 (320)
Q Consensus 20 prDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAe--yfGL~h~S~--GeG~dR~VVV~Kt 87 (320)
+.++.|+-++-+.|.+|+++... ..+.+||+|+|+|.|||.+.. |-++.+... +++..+.|+|.+.
T Consensus 170 ~~~~~~~~~~~~~I~~wl~~~~~--~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v~~~ 239 (507)
T 3d45_A 170 EDQKKFIDQVIEKIEDFLQSEEK--RSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVISKV 239 (507)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC--CccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEEEeC
Confidence 56788999999999999988763 459999999999999999863 224332211 1333455665544
No 7
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=63.90 E-value=1.4 Score=43.12 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHH
Q 020851 21 PSKHLVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLAD 65 (320)
Q Consensus 21 rDR~fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAe 65 (320)
.++.|+-++-+.|.+|+++... .++.++|+|+|+|.|||.+..
T Consensus 176 e~~~~~~~~~~~i~~~l~~~~~--~~l~l~~~~~~qr~Lv~q~l~ 218 (430)
T 2a1r_A 176 DQKKFIDQVVEKIEDLLQSEEN--KNLDLEPCTGFQRKLIYQTLS 218 (430)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--CccccCCCcHHHHHHHHHHHH
Confidence 3566777888888889887653 469999999999999999864
No 8
>2fph_X YLMH; division protein, bacteria, GRAM+, DNA binding protein; 1.70A {Streptococcus pneumoniae}
Probab=37.14 E-value=92 Score=26.36 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=41.3
Q ss_pred cchhHHHHHHHHHHHHHhhCCCCCCcceecCCC-ChHHHHHHHHHHHHhCCeeeecc--cCCceEEEE
Q 020851 20 LPSKHLVLSMEEALVNFLQDDNSADGVLELEPM-DSYNRLLLHRLADIFGFAHESVG--EGVDRHLIL 84 (320)
Q Consensus 20 prDR~fLLkLEedIi~FIqds~~~~~slefpPM-NSY~RlLVHRlAeyfGL~h~S~G--eG~dR~VVV 84 (320)
+.++.+|.++.+.+..-..... ..+.++ |++++.+++.++..+++....+| ++..|..++
T Consensus 8 ~~e~~~i~~~~d~~~~a~~~~~-----~~~T~FL~p~e~~i~~~i~~~~~~~~~~~GGy~~AER~r~~ 70 (165)
T 2fph_X 8 IEDRPFLDKGMEWIKKVEDSYA-----PFLTPFINPHQEKLLKILAKTYGLACSSSGEFVSSEYVRVL 70 (165)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTS-----CEECCCBCHHHHHHHHHHHHHTTCEEEEGGGTSCCSSBCEE
T ss_pred hhhHHHHHHHHHHHHHHHHhCC-----EEECCCCCHHHHHHHHHHHhccCcEEEEeCCCcHHheeEEE
Confidence 4466777776665554443322 456665 99999999999987799888887 555565443
No 9
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=22.74 E-value=34 Score=27.79 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCeee
Q 020851 57 RLLLHRLADIFGFAHE 72 (320)
Q Consensus 57 RlLVHRlAeyfGL~h~ 72 (320)
.-+||++|.|||+.-.
T Consensus 92 ~vvvhEiahh~G~~~e 107 (114)
T 3e11_A 92 KTVVHEIAHHFGIDDE 107 (114)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3679999999999754
No 10
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=15.93 E-value=54 Score=25.38 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCcceecCCCChHHHHHHHHHHHHhCCeee
Q 020851 25 LVLSMEEALVNFLQDDNSADGVLELEPMDSYNRLLLHRLADIFGFAHE 72 (320)
Q Consensus 25 fLLkLEedIi~FIqds~~~~~slefpPMNSY~RlLVHRlAeyfGL~h~ 72 (320)
..-.+|+.|..+|.+... ..+|+-.+.-|..+..++..+|+...
T Consensus 73 ~~~~~E~~L~~Wi~~~~~----~g~pvs~~~I~~kA~~i~~~~g~~~f 116 (131)
T 1hlv_A 73 PYDKLEGLLIAWFQQIRA----AGLPVKGIILKEKALRIAEELGMDDF 116 (131)
T ss_dssp TTHHHHHHHHHHHHHHGG----GTCCCCHHHHHHHHHHHHHHHTCTTC
T ss_pred CCHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 456789999999988642 57788888999999999999987643
Done!