BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020852
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 160/273 (58%), Gaps = 11/273 (4%)
Query: 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
++C+CR Y+PMSY Y R PL+ LR+E+Y + + I+W R+ A ++++ P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288
Query: 61 HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
H+ + ++ Y + ++ LR ++++ +HI +D ++ I+IG + K +N
Sbjct: 289 HSWLLRVV-----YALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343
Query: 121 MLSCW-VEDPNSDYFKKHLARITEYFWVGEDGLRVQ-SFGSQTWDCALAVQALLAC--NL 176
ML W V+ P S F++H++RI +Y W+G DG+++Q + GSQ WD A A+QALL +
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403
Query: 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236
E L KAH+FL+ SQV DNP D++ +R + KGG++FS D GW VSDC++E+
Sbjct: 404 RPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462
Query: 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ 269
L L P + E + ER DA +L+++
Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMR 494
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 160/273 (58%), Gaps = 11/273 (4%)
Query: 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFP 60
++C+CR Y+PMSY Y R PL+ LR+E+Y + + I+W R+ A ++++ P
Sbjct: 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTP 288
Query: 61 HTPVQNLLWDTLYYVVEPIFNRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLN 120
H+ + ++ Y + ++ LR ++++ +HI +D ++ I+IG + K +N
Sbjct: 289 HSWLLRVV-----YALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTIN 343
Query: 121 MLSCW-VEDPNSDYFKKHLARITEYFWVGEDGLRVQ-SFGSQTWDCALAVQALLAC--NL 176
ML W V+ P S F++H++RI +Y W+G DG+++Q + GSQ WD A A+QALL +
Sbjct: 344 MLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHH 403
Query: 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236
E L KAH+FL+ SQV DNP D++ +R + KGG++FS D GW VSDC++E+
Sbjct: 404 RPEFSSCLQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462
Query: 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ 269
L L P + E + ER DA +L+++
Sbjct: 463 AVLLLQEKCPHVT-EHIPRERLCDAVAVLLNMR 494
>pdb|1TWY|A Chain A, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|B Chain B, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|C Chain C, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|D Chain D, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|E Chain E, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|F Chain F, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|G Chain G, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
pdb|1TWY|H Chain H, Crystal Structure Of An Abc-Type Phosphate Transport
Receptor From Vibrio Cholerae
Length = 290
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 100 INYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWV 147
+N+ +A +I+IG V+K + + DP SD KH +++ F +
Sbjct: 194 VNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLI 241
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 151 GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRH 210
G Q+ S WD LAV AL A L + L+KA ++L + Q+T GD+ +
Sbjct: 301 GWMFQASISPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPN 357
Query: 211 ISKGGWTFSNKDHGWPVSDCSS 232
+ GG+ F + +P D ++
Sbjct: 358 LKPGGFAFQFDNVYYPDVDDTA 379
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 151 GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRH 210
G Q+ S WD LAV AL A L + L+KA ++L + Q+T GD+ +
Sbjct: 301 GWMFQASISPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPN 357
Query: 211 ISKGGWTFS 219
+ GG+ F
Sbjct: 358 LKPGGFAFQ 366
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 151 GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRH 210
G Q+ S WD LAV AL A L + L+KA ++L + Q+T GD+ +
Sbjct: 301 GWMFQASISPVWDTGLAVLALRAAGLPADHD-RLVKAGEWLLDRQIT--VPGDWAVKRPN 357
Query: 211 ISKGGWTFS 219
+ GG+ F
Sbjct: 358 LKPGGFAFQ 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,205,241
Number of Sequences: 62578
Number of extensions: 420221
Number of successful extensions: 1104
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 9
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)