Query 020852
Match_columns 320
No_of_seqs 196 out of 1231
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 3.3E-80 7.2E-85 638.5 23.2 310 1-312 257-576 (763)
2 PLN03012 Camelliol C synthase 100.0 1.8E-78 4E-83 624.5 22.8 299 1-303 257-560 (759)
3 KOG0497 Oxidosqualene-lanoster 100.0 4.4E-67 9.6E-72 522.8 15.6 282 1-282 257-538 (760)
4 TIGR03463 osq_cycl 2,3-oxidosq 100.0 3.4E-65 7.4E-70 525.0 21.8 288 1-297 150-439 (634)
5 cd02892 SQCY_1 Squalene cyclas 100.0 1.2E-56 2.6E-61 463.1 22.2 291 1-303 153-447 (634)
6 TIGR01507 hopene_cyclase squal 100.0 2.8E-56 6E-61 458.8 22.6 285 1-313 169-465 (635)
7 TIGR01787 squalene_cyclas squa 100.0 4.1E-53 8.8E-58 434.9 20.2 287 1-314 153-453 (621)
8 PLN02993 lupeol synthase 100.0 3.8E-28 8.3E-33 252.0 14.9 206 87-314 509-754 (763)
9 PLN03012 Camelliol C synthase 100.0 5.6E-28 1.2E-32 250.3 14.6 206 87-314 509-754 (759)
10 TIGR01507 hopene_cyclase squal 99.9 4.4E-27 9.6E-32 242.6 15.6 201 87-314 399-631 (635)
11 COG1657 SqhC Squalene cyclase 99.9 9.8E-26 2.1E-30 224.0 8.6 255 1-303 68-326 (517)
12 TIGR01787 squalene_cyclas squa 99.9 1.3E-24 2.8E-29 224.1 15.6 200 88-313 385-620 (621)
13 TIGR03463 osq_cycl 2,3-oxidosq 99.9 1.8E-24 3.8E-29 223.5 15.7 198 88-312 397-634 (634)
14 cd02892 SQCY_1 Squalene cyclas 99.9 5.6E-23 1.2E-27 212.8 17.4 201 88-312 397-634 (634)
15 KOG0497 Oxidosqualene-lanoster 99.8 5.4E-21 1.2E-25 192.6 9.7 178 117-315 567-754 (760)
16 cd02889 SQCY Squalene cyclase 99.8 1.5E-19 3.3E-24 173.2 13.6 154 135-296 2-155 (348)
17 cd02889 SQCY Squalene cyclase 99.8 7.6E-19 1.7E-23 168.4 16.4 200 88-312 114-348 (348)
18 cd02897 A2M_2 Proteins similar 99.6 5.3E-15 1.1E-19 139.5 15.4 163 88-277 99-278 (292)
19 PF13249 Prenyltrans_2: Prenyl 99.6 7.1E-15 1.5E-19 118.5 6.9 109 139-277 2-113 (113)
20 COG1657 SqhC Squalene cyclase 99.3 3.5E-12 7.5E-17 127.7 6.9 163 131-317 351-515 (517)
21 cd00688 ISOPREN_C2_like This g 99.3 3.1E-11 6.7E-16 110.3 12.8 127 129-275 49-179 (300)
22 cd00688 ISOPREN_C2_like This g 99.3 2E-11 4.4E-16 111.5 11.5 123 135-281 2-129 (300)
23 PF13243 Prenyltrans_1: Prenyl 99.1 2.9E-11 6.2E-16 97.2 2.8 107 134-270 1-107 (109)
24 cd02896 complement_C3_C4_C5 Pr 99.0 1.7E-09 3.7E-14 102.6 12.1 100 134-243 54-159 (297)
25 cd02896 complement_C3_C4_C5 Pr 99.0 4.3E-09 9.4E-14 99.8 13.1 114 132-277 170-283 (297)
26 cd02890 PTase Protein prenyltr 99.0 1.7E-08 3.6E-13 94.9 15.2 161 87-277 47-216 (286)
27 PF13243 Prenyltrans_1: Prenyl 98.9 1.7E-10 3.7E-15 92.7 0.3 68 184-278 1-68 (109)
28 PF13249 Prenyltrans_2: Prenyl 98.9 1.4E-09 3E-14 87.5 4.3 66 188-280 1-66 (113)
29 TIGR02474 pec_lyase pectate ly 98.9 2E-09 4.3E-14 101.3 5.2 67 227-300 42-108 (290)
30 cd02891 A2M_like Proteins simi 98.8 3.1E-08 6.7E-13 92.1 11.8 119 132-270 49-172 (282)
31 cd02897 A2M_2 Proteins similar 98.8 5.2E-08 1.1E-12 91.9 12.2 118 134-270 51-174 (292)
32 cd02890 PTase Protein prenyltr 98.8 5.7E-08 1.2E-12 91.3 11.9 131 118-277 33-167 (286)
33 cd02894 GGTase-II Geranylgeran 98.6 9.8E-07 2.1E-11 83.4 13.9 114 134-277 102-217 (287)
34 cd02895 GGTase-I Geranylgerany 98.4 4E-06 8.7E-11 80.1 13.7 137 116-277 96-237 (307)
35 cd02893 FTase Protein farnesyl 98.4 3.4E-06 7.5E-11 80.3 12.4 130 116-277 31-167 (299)
36 cd02894 GGTase-II Geranylgeran 98.4 3.1E-06 6.7E-11 80.0 11.5 118 133-277 50-169 (287)
37 cd02891 A2M_like Proteins simi 98.3 1.8E-06 3.9E-11 80.3 8.4 101 159-281 21-126 (282)
38 PLN03201 RAB geranylgeranyl tr 98.3 1.3E-05 2.8E-10 77.0 13.8 114 134-277 106-221 (316)
39 PLN03201 RAB geranylgeranyl tr 98.2 2.5E-05 5.5E-10 75.0 13.1 156 88-277 9-173 (316)
40 PF07678 A2M_comp: A-macroglob 98.2 1.7E-05 3.7E-10 73.3 11.1 102 158-277 129-230 (246)
41 cd02893 FTase Protein farnesyl 98.1 7.5E-05 1.6E-09 71.1 14.3 111 137-277 103-216 (299)
42 PF07678 A2M_comp: A-macroglob 98.0 1.4E-05 3E-10 73.9 7.1 117 137-268 2-125 (246)
43 cd02895 GGTase-I Geranylgerany 97.9 8.8E-05 1.9E-09 71.0 11.1 139 118-278 33-187 (307)
44 PLN02710 farnesyltranstransfer 97.9 0.00012 2.6E-09 73.1 12.2 160 88-277 93-260 (439)
45 PLN02710 farnesyltranstransfer 97.9 0.00077 1.7E-08 67.4 17.8 160 88-277 45-212 (439)
46 TIGR02474 pec_lyase pectate ly 97.8 7.2E-05 1.6E-09 70.7 8.6 93 172-275 58-156 (290)
47 PF09492 Pec_lyase: Pectic aci 97.2 0.00028 6E-09 66.8 3.0 52 227-282 37-88 (289)
48 KOG0367 Protein geranylgeranyl 97.1 0.0025 5.4E-08 60.1 8.4 127 118-277 111-249 (347)
49 COG1689 Uncharacterized protei 97.0 0.0046 1E-07 56.0 9.6 142 97-280 105-253 (274)
50 COG5029 CAL1 Prenyltransferase 96.9 0.0045 9.7E-08 58.8 8.6 104 148-278 89-196 (342)
51 KOG0366 Protein geranylgeranyl 96.5 0.022 4.8E-07 53.0 9.9 106 140-278 70-184 (329)
52 KOG0365 Beta subunit of farnes 96.4 0.083 1.8E-06 51.1 13.2 158 88-277 73-240 (423)
53 KOG0365 Beta subunit of farnes 96.2 0.056 1.2E-06 52.2 11.1 116 134-277 74-192 (423)
54 PF00432 Prenyltrans: Prenyltr 96.2 0.004 8.7E-08 42.1 2.5 21 258-278 3-23 (44)
55 PF09492 Pec_lyase: Pectic aci 96.2 0.0056 1.2E-07 58.1 4.1 107 164-281 41-162 (289)
56 COG5029 CAL1 Prenyltransferase 95.9 0.1 2.2E-06 49.9 11.1 72 181-277 173-244 (342)
57 PLN02592 ent-copalyl diphospha 95.6 0.039 8.4E-07 59.2 8.0 102 134-267 74-175 (800)
58 PF00432 Prenyltrans: Prenyltr 94.6 0.056 1.2E-06 36.4 3.8 41 184-241 3-43 (44)
59 KOG0366 Protein geranylgeranyl 94.3 0.7 1.5E-05 43.3 11.3 113 147-277 127-280 (329)
60 PF01122 Cobalamin_bind: Eukar 92.3 0.64 1.4E-05 45.0 8.2 61 132-198 211-274 (326)
61 TIGR01577 oligosac_amyl oligos 92.2 0.25 5.4E-06 51.7 5.8 96 160-271 294-395 (616)
62 KOG1366 Alpha-macroglobulin [P 92.1 1.1 2.5E-05 51.1 11.1 101 158-277 1095-1196(1436)
63 PF01122 Cobalamin_bind: Eukar 91.8 0.64 1.4E-05 45.0 7.6 124 125-277 107-236 (326)
64 TIGR01535 glucan_glucosid gluc 90.2 0.78 1.7E-05 48.4 7.1 87 162-268 298-385 (648)
65 PLN02279 ent-kaur-16-ene synth 89.8 0.69 1.5E-05 49.8 6.4 99 133-267 34-135 (784)
66 cd00249 AGE AGE domain; N-acyl 88.2 1.8 4E-05 41.7 7.7 106 158-275 49-158 (384)
67 COG1689 Uncharacterized protei 83.2 0.99 2.1E-05 41.3 2.7 67 183-277 7-75 (274)
68 KOG1366 Alpha-macroglobulin [P 80.4 3.6 7.9E-05 47.2 6.5 69 134-207 973-1046(1436)
69 PF07470 Glyco_hydro_88: Glyco 80.2 3 6.4E-05 40.0 5.1 121 136-274 151-294 (336)
70 cd00249 AGE AGE domain; N-acyl 78.6 17 0.00038 34.9 10.0 64 133-196 77-152 (384)
71 PF07221 GlcNAc_2-epim: N-acyl 73.0 22 0.00047 34.1 8.9 63 134-197 45-118 (346)
72 PF07470 Glyco_hydro_88: Glyco 68.2 15 0.00032 35.1 6.6 52 148-199 229-292 (336)
73 PF07221 GlcNAc_2-epim: N-acyl 66.3 13 0.00028 35.6 5.7 96 160-275 19-124 (346)
74 PLN02592 ent-copalyl diphospha 56.3 44 0.00096 36.4 8.0 81 108-193 91-175 (800)
75 TIGR01577 oligosac_amyl oligos 53.3 1.5E+02 0.0032 31.1 11.3 124 141-277 453-584 (616)
76 PLN02279 ent-kaur-16-ene synth 53.2 1.3E+02 0.0029 32.7 11.0 58 135-193 245-302 (784)
77 cd04794 euk_LANCL eukaryotic L 52.5 2.2E+02 0.0047 27.2 12.7 46 231-280 167-212 (343)
78 TIGR01535 glucan_glucosid gluc 51.0 16 0.00035 38.8 3.7 88 177-282 246-341 (648)
79 COG4225 Predicted unsaturated 46.6 2.8E+02 0.006 27.3 11.0 184 89-277 54-253 (357)
80 cd04791 LanC_SerThrkinase Lant 46.1 2.5E+02 0.0053 26.1 10.7 95 164-276 88-183 (321)
81 COG1331 Highly conserved prote 42.8 51 0.0011 35.0 5.8 116 164-297 413-531 (667)
82 KOG3760 Heparan sulfate-glucur 42.1 19 0.0004 36.0 2.3 25 254-278 378-402 (594)
83 PHA01516 hypothetical protein 41.5 15 0.00033 28.2 1.3 42 151-199 47-88 (98)
84 PF07944 DUF1680: Putative gly 38.7 59 0.0013 33.4 5.5 94 181-280 10-107 (520)
85 COG3387 SGA1 Glucoamylase and 37.0 2.5E+02 0.0053 29.7 9.8 125 133-277 444-575 (612)
86 KOG0367 Protein geranylgeranyl 36.6 4.1E+02 0.0088 25.8 10.8 70 183-280 229-301 (347)
87 PLN00119 endoglucanase 33.6 1.8E+02 0.0038 30.0 7.9 38 161-198 9-50 (489)
88 PF11329 DUF3131: Protein of u 32.4 3.7E+02 0.0081 26.6 9.7 105 134-243 4-120 (367)
89 cd04792 LanM-like LanM-like pr 30.8 4.3E+02 0.0093 28.6 10.8 92 167-276 595-687 (825)
90 COG3538 Uncharacterized conser 30.3 1.1E+02 0.0024 30.3 5.5 65 121-194 308-384 (434)
91 cd04794 euk_LANCL eukaryotic L 29.3 2.1E+02 0.0045 27.3 7.3 26 178-206 184-209 (343)
92 COG4225 Predicted unsaturated 28.9 4.3E+02 0.0093 26.0 9.2 100 137-241 237-349 (357)
93 PF05382 Amidase_5: Bacterioph 26.0 87 0.0019 26.8 3.6 43 184-243 2-44 (145)
94 PLN02613 endoglucanase 25.2 2E+02 0.0043 29.7 6.6 21 255-275 115-135 (498)
95 COG2373 Large extracellular al 24.9 72 0.0016 37.6 3.7 54 229-282 1171-1225(1621)
96 COG2942 N-acyl-D-glucosamine 2 24.7 5.7E+02 0.012 25.6 9.4 74 123-198 68-154 (388)
97 COG5360 Uncharacterized protei 24.7 7.6E+02 0.016 25.3 10.2 101 89-198 114-230 (566)
98 COG2942 N-acyl-D-glucosamine 2 24.6 2.4E+02 0.0053 28.1 6.8 72 177-268 73-150 (388)
99 PLN02909 Endoglucanase 23.8 1.8E+02 0.0039 29.9 5.9 21 255-275 123-143 (486)
100 PLN02266 endoglucanase 22.0 2.5E+02 0.0054 29.1 6.6 21 255-275 133-153 (510)
101 PF15144 DUF4576: Domain of un 21.0 84 0.0018 24.2 2.2 27 255-281 55-81 (88)
102 PF00759 Glyco_hydro_9: Glycos 20.5 71 0.0015 31.7 2.3 21 255-275 97-117 (444)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=3.3e-80 Score=638.52 Aligned_cols=310 Identities=55% Similarity=1.032 Sum_probs=291.9
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||||+|||||+|||+|||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++++++++++.+.+++++++
T Consensus 257 ~~~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l 336 (763)
T PLN02993 257 TLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFL 336 (763)
T ss_pred hHHhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999988899999999999998
Q ss_pred cCCCch-HHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCC
Q 020852 81 NRWPFK-KLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGS 159 (320)
Q Consensus 81 ~~~~~~-~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s 159 (320)
+++|++ ++|++|+++++++|+.||++|+|++|+|||++|+||++++++|+||.+++|+++|++|+|+.+|||+||+|+|
T Consensus 337 ~~~p~~~~lR~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri~d~lw~~edgm~~q~~gS 416 (763)
T PLN02993 337 TRWPLNKLVREKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSFGS 416 (763)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCC
Confidence 888766 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852 160 QTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~ 239 (320)
|||||||++|||+++|++++++++|+||++||+++|++++++|||.+++|+.+||||+||+.|++|||+||||+||+|++
T Consensus 417 qvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l 496 (763)
T PLN02993 417 QLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCM 496 (763)
T ss_pred chHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHH
Confidence 99999999999999999877799999999999999999888999999999999999999999999999999999999988
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc--CCCCCCc-------hhhhcc
Q 020852 240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL--GMSKIPM-------GTGTLG 310 (320)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~--~~~~~p~-------~~~~l~ 310 (320)
++...+.+.+|.++..+++++||+|||+|||+||||++||++| ...+|+.+||+|+ +++++|- .|-||+
T Consensus 497 ~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~--~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~ 574 (763)
T PLN02993 497 LLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVR--AYKWLELLNPTDFFANTMVEREYVECTSAVIQALV 574 (763)
T ss_pred HHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCC--chhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence 8876665456677888999999999999999999999999999 8999999999999 8888872 245665
Q ss_pred cc
Q 020852 311 DF 312 (320)
Q Consensus 311 ~~ 312 (320)
.|
T Consensus 575 ~~ 576 (763)
T PLN02993 575 LF 576 (763)
T ss_pred Hh
Confidence 55
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.8e-78 Score=624.47 Aligned_cols=299 Identities=60% Similarity=1.134 Sum_probs=283.9
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||||+|||||+|||+|||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++++++++|..++.++|+++
T Consensus 257 ~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l 336 (759)
T PLN03012 257 MWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFL 336 (759)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCch-HHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCC
Q 020852 81 NRWPFK-KLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGS 159 (320)
Q Consensus 81 ~~~~~~-~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s 159 (320)
..++++ +||++|++++++||+.|+++|.|++++||+++|+||++++++|+||.+++|+++|++|+|+.+|||+||+|+|
T Consensus 337 ~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~gS 416 (759)
T PLN03012 337 ACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSFGS 416 (759)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCC
Confidence 888744 6999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852 160 QTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~ 239 (320)
|||||+|++|||+++|++++++++++||++||+++|++++++|||.+++||.++|||+||+.|++|||+||||+||+|++
T Consensus 417 qvWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~l 496 (759)
T PLN03012 417 QLWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCL 496 (759)
T ss_pred cHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHH
Confidence 99999999999999999888899999999999999999888999999999999999999999999999999999999987
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccc----ccccCCCCCC
Q 020852 240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIG----WKNLGMSKIP 303 (320)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~----f~~~~~~~~p 303 (320)
.+...+++.+|.++..+++++||+|||+|||+||||++||++| ...+|+.+| |+|+ + ++|
T Consensus 497 ll~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~--~~~~le~lnp~E~F~d~-m-id~ 560 (759)
T PLN03012 497 LFSMIAPDIVGPKMDPEQLHDAVNILLSLQSKNGGMTAWEPAG--APEWLELLNPTEMFADI-V-IEH 560 (759)
T ss_pred HHHhcccccccccccHHHHHHHHHHHHhccCCCCCEeeecCCc--chHHHHhcChhhhhcCe-e-cCC
Confidence 7765554456677888999999999999999999999999999 899999999 9998 4 454
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-67 Score=522.77 Aligned_cols=282 Identities=60% Similarity=1.132 Sum_probs=274.9
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
+|||+|.||+||+|||++||++|.+|++..||+|||++||++|+|.++|+.|+++|.|+||+.+++++|++|.++.++++
T Consensus 257 ~w~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll 336 (760)
T KOG0497|consen 257 LWCHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLL 336 (760)
T ss_pred eEEEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCCh
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQ 160 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s~ 160 (320)
++||.+-+|++|++.++|+|+.||++++||++|||+++++||+||.++|++..+++|+.|++||||+++|||.||+++||
T Consensus 337 ~rWp~~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~Ri~d~lw~gedGmkmq~~~sQ 416 (760)
T KOG0497|consen 337 NRWPLKLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLARIPDFLWIAEDGMKMQGFNSQ 416 (760)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhccccCeEEEcCCCceEeecchh
Confidence 99998667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~ 240 (320)
+|||+|++|||.++++.+|+.++++||.+||++.|+.++++||....|||.++|||+||+.++|||++||||+++++++.
T Consensus 417 ~Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~ll 496 (760)
T KOG0497|consen 417 LWDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLL 496 (760)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999998
Q ss_pred hcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC
Q 020852 241 LSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI 282 (320)
Q Consensus 241 ~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~ 282 (320)
++.++.+.+|+.++.|++.+||+.|+.+|+.+||+++||+.+
T Consensus 497 l~~~~~~~vg~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r 538 (760)
T KOG0497|consen 497 LSSMPSEIVGEKIDVERLYDAVDVLLYLQSENGGFAAYEPAR 538 (760)
T ss_pred hcCCChhhccCCCCHHHHHHHHHHHHhhhhccCccccccccc
Confidence 888888899999999999999999999999999999999876
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=3.4e-65 Score=525.00 Aligned_cols=288 Identities=34% Similarity=0.596 Sum_probs=259.6
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||+|+|||||+||+++||++|++|++.+||+|||++||++|+|.+.|+.++++|.|.|+++++..+...+.. +++
T Consensus 150 ~~~~~R~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l~~-~~~-- 226 (634)
T TIGR03463 150 FYCHTRMVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVMYG-YER-- 226 (634)
T ss_pred HHHHhHHHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHHHH-hhc--
Confidence 69999999999999999999999999998999999999999999999999999999999999877777665543 343
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCC-CceeccCCC
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGED-GLRVQSFGS 159 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~d-G~~~q~~~s 159 (320)
++++++|++|+++|++||+.++++++|++|+|++++++||++++++||||.+++|+++|++|+|.++| |+++|+|.|
T Consensus 227 --~~~~~lr~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~s 304 (634)
T TIGR03463 227 --LAGKQLRARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGYNS 304 (634)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeCCC
Confidence 23467999999999999999999999999999999999999999999999999999999999999999 899999988
Q ss_pred hhhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHH
Q 020852 160 QTWDCALAVQALLACNLT-DEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCC 238 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~~-~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL 238 (320)
++|||+|+++||+++|+. .+++++|+||++||+++|++++ +|||.+++|+.++|||+|++.|++|||+||||++|+||
T Consensus 305 ~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al 383 (634)
T TIGR03463 305 SEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLED-TAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSAS 383 (634)
T ss_pred CchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcC-CCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHH
Confidence 889999999999999974 3567999999999999999874 58999999999999999999999999999999999999
Q ss_pred HHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc
Q 020852 239 LHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL 297 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~ 297 (320)
+++++.+.. ....++++++++||+||++|||+||||++|++++ +.-+|+++||+++
T Consensus 384 ~~~~~~~~~-~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~--~~~~l~~~~~~~~ 439 (634)
T TIGR03463 384 LVLEPLGLN-PEERVPQARLQDAVEFILSRQNEDGGFGTYERQR--GPRVLELLNPSEM 439 (634)
T ss_pred HHHhhcCCc-ccccccHHHHHHHHHHHHHhcCCCCCEeccCCCC--cHHHHhcCChHHh
Confidence 887642110 0012567999999999999999999999999988 7889999999987
No 5
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1.2e-56 Score=463.12 Aligned_cols=291 Identities=42% Similarity=0.737 Sum_probs=252.9
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||+|+||+||+||+++||++|+++++..+|+|||++|+++|+|..+|+ +++|.+.|+++++..+...+ ..++.
T Consensus 153 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-- 227 (634)
T cd02892 153 FWCWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLL-HWYEP-- 227 (634)
T ss_pred HHHHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHH-HHHHh--
Confidence 69999999999999999999999998888899999999999999999998 68888888777666665444 33443
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccC-CCcHHHHHHHHHHhhhhhhcCCCcee-ccCC
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVED-PNSDYFKKHLARITEYFWVGEDGLRV-QSFG 158 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~~dG~~~-q~~~ 158 (320)
++++++|++|++++++||..+|+++|++|.+|++++++|++++... |+||.+++|+++|.+|+|..+||+++ +.++
T Consensus 228 --~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~ 305 (634)
T cd02892 228 --LPPKPLRRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNG 305 (634)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCC
Confidence 2346799999999999999999999999999999999998887544 89999999999999999998888765 5559
Q ss_pred ChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHH
Q 020852 159 SQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCC 238 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL 238 (320)
|++|||+|+++||.++|+.+++++.|+||++||+++|+.+ .+|||...+++.++|||+|++.+++|||+||||++|+||
T Consensus 306 s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~-~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL 384 (634)
T cd02892 306 SQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILD-NPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKAL 384 (634)
T ss_pred CchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCC-CCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHH
Confidence 9999999999999999988666899999999999999943 469999999999999999999999999999999999999
Q ss_pred HHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcce-eeccccccccC-CCCCC
Q 020852 239 LHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKAC-IFNDIGWKNLG-MSKIP 303 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~-~l~~~~f~~~~-~~~~p 303 (320)
+.+...+. .|..++.+++++|++||++|||+||||++|++.+ ... +.|.+|+.++| ...+|
T Consensus 385 ~~~~~~~~--~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~--~~~~~~~~~p~e~~g~~~~d~ 447 (634)
T cd02892 385 LRLQELPP--FGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDN--TYHWLENLNPFEDFGDIMIDP 447 (634)
T ss_pred HHhhccCC--cchhhHHHHHHHHHHHHHhccCCCCCEeeecCCC--chhhHhhcCchhhhcccccCC
Confidence 99875432 1234677999999999999999999999999886 444 88889999987 44443
No 6
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=2.8e-56 Score=458.80 Aligned_cols=285 Identities=21% Similarity=0.250 Sum_probs=238.3
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCch-hHHHHHHHHHHhHhhc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTP-VQNLLWDTLYYVVEPI 79 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~-~~~~~~~~l~~~~~~~ 79 (320)
||||+|+|||||+||+++||+++++..+ .| +|||++|+++ .|+.+++.| ++| ++..+...+ +.+++
T Consensus 169 ~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~~-~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l-~~~~~- 235 (635)
T TIGR01507 169 FSSWARATVVPLSIVCSRKPVFPLPERA-RV-PELYETDVPK-----PRRRGAKGG----TGWGIFDALDRAL-HGYEK- 235 (635)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCCccc-Ch-HhhcCCChHH-----hcccCCccC----CcHHHHHHHHHHH-HHHHh-
Confidence 6999999999999999999999987432 34 9999999854 455565554 344 444444444 34444
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhhcCCCC-ccccccchHHhhccc---ccccCCCcHHHHHHHHHHhhhhhhcCCCceec
Q 020852 80 FNRWPFKKLRDKSLKVAMKHINYEDEASR-YITIGCVEKPLNMLS---CWVEDPNSDYFKKHLARITEYFWVGEDGLRVQ 155 (320)
Q Consensus 80 ~~~~~~~~lr~~Al~~~~~~i~~~~~~t~-~~~~~pv~~~l~~L~---~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q 155 (320)
+++.++|++|++++++||+.+++.+| |.+++| +.++||. +.+++++||.+++|+++|++|+|..++|+++|
T Consensus 236 ---l~~~~lr~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~ 310 (635)
T TIGR01507 236 ---LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQ 310 (635)
T ss_pred ---cCCcHHHHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEec
Confidence 23357999999999999999998888 888877 4444433 34677999999999999999999988999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHH
Q 020852 156 SFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESF 235 (320)
Q Consensus 156 ~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL 235 (320)
+++||+|||+|+++||.++|++++ ++.|+||.+||+++|+.. +|||.+++++.++|||+|++.|++|||+||||++|
T Consensus 311 ~~~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L 387 (635)
T TIGR01507 311 ACVSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVV 387 (635)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHHHH
Confidence 999999999999999999999877 899999999999999974 59999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccccCCCCCCc-------hhhh
Q 020852 236 LCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIPM-------GTGT 308 (320)
Q Consensus 236 ~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~~~~~~p~-------~~~~ 308 (320)
+||..+. .++ .+..++++++|++||++|||+||||++||++| +..+++++||+|++..++|- .+.|
T Consensus 388 ~AL~~~~-~~~----~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~--~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~a 460 (635)
T TIGR01507 388 WALNGLR-LPD----ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDN--TSDLLNHIPFCDFGAVTDPPTADVTARVLEC 460 (635)
T ss_pred HHHHHcC-CCc----cccchHHHHHHHHHHHHhcCCCCCEecccCCc--chhHHhcCCccccccccCCCCccHHHHHHHH
Confidence 9998874 221 23457899999999999999999999999988 88999999999999999873 2456
Q ss_pred ccccc
Q 020852 309 LGDFP 313 (320)
Q Consensus 309 l~~~~ 313 (320)
||.+.
T Consensus 461 l~~~g 465 (635)
T TIGR01507 461 LGSFG 465 (635)
T ss_pred HHHhC
Confidence 66653
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=4.1e-53 Score=434.92 Aligned_cols=287 Identities=36% Similarity=0.635 Sum_probs=235.5
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
+|||+|+|++||+|++++|++.|++| |+|||++| +++ .+.|+.++++|.|+|++++.+.++..+..+.+++
T Consensus 153 ~w~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (621)
T TIGR01787 153 SWCRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPF- 223 (621)
T ss_pred hhhhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhhccccc-
Confidence 69999999999999999999999887 49999999 877 4678888999999998887666644332221111
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccC-CCcHHHHHHHHHHhhhhhhcCCCceeccCCC
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVED-PNSDYFKKHLARITEYFWVGEDGLRVQSFGS 159 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s 159 (320)
+|+.|+++|++||..+++.+| |+++++++++|++++..+ ||||.+++|+++|++|+|+.+||+++|+|+|
T Consensus 224 -------~~~~a~~~a~~~~~~~~~~~g--~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~~s 294 (621)
T TIGR01787 224 -------LRKALRKRALQWLYEHIAADG--SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGTGS 294 (621)
T ss_pred -------ccHHHHHHHHHHHHHHhccCC--CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecCCC
Confidence 244555555555555555565 899999999998887544 6999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHH
Q 020852 160 QTWDCALAVQALLACNL--TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLC 237 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~A 237 (320)
|||||+|+++||.++|+ .+++++.|+||++||+++|++++++|||..+.++..+|||+||+.|++|||+|||+.++++
T Consensus 295 ~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la 374 (621)
T TIGR01787 295 QVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALK 374 (621)
T ss_pred cHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHH
Confidence 99999999999999996 3455899999999999999998767999987777778999999999999999999999988
Q ss_pred HHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccc-c---ccccCCCCCC-------chh
Q 020852 238 CLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDI-G---WKNLGMSKIP-------MGT 306 (320)
Q Consensus 238 L~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~-~---f~~~~~~~~p-------~~~ 306 (320)
+..+... +.++..+++++|++||++|||+||||++|++++ ...+||.+ | |+|+ +. +| ..|
T Consensus 375 ~~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~--~~~~l~~l~p~e~f~d~-~~-d~~~~~~T~~~l 445 (621)
T TIGR01787 375 AVLLLQE-----DEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDN--TGEWLELLNPSEVFGDI-MI-DPPYVDVTARVI 445 (621)
T ss_pred HHHhhcC-----cccccHHHHHHHHHHHHHHcCCCCCEeeecccc--chHHHHHhcchhhhccc-cc-cCCCCchHHHHH
Confidence 7554421 134678999999999999999999999999988 88999999 9 9887 22 33 135
Q ss_pred hhcccccC
Q 020852 307 GTLGDFPH 314 (320)
Q Consensus 307 ~~l~~~~~ 314 (320)
.||+.+.+
T Consensus 446 ~aL~~~~~ 453 (621)
T TIGR01787 446 QALGAFGH 453 (621)
T ss_pred HHHHHhcC
Confidence 67776654
No 8
>PLN02993 lupeol synthase
Probab=99.95 E-value=3.8e-28 Score=251.97 Aligned_cols=206 Identities=13% Similarity=0.167 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccccc-------------------------------chHHhhccccccc-CCCc---
Q 020852 87 KLRDKSLKVAMKHINYEDEASRYITIGC-------------------------------VEKPLNMLSCWVE-DPNS--- 131 (320)
Q Consensus 87 ~lr~~Al~~~~~~i~~~~~~t~~~~~~p-------------------------------v~~~l~~L~~~~~-~pd~--- 131 (320)
.+.+.++.++.+||..+|+.+| |++. ...+|.+|+.++. .|++
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dG--G~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ 586 (763)
T PLN02993 509 KIDPEQLYDSVNLLLSLQSENG--GVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTK 586 (763)
T ss_pred cchHHHHHHHHHHHHhhccCCC--CEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhh
Confidence 4567899999999999997776 4444 1236777777653 3544
Q ss_pred ---HHHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccc
Q 020852 132 ---DYFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSM 207 (320)
Q Consensus 132 ---~~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~ 207 (320)
+.++++++.|.+. +.+||+|.+.| .+++|.|++++.||..+|.+.+..+.|+||++||+++|..| |+|++.
T Consensus 587 ei~~~i~rAv~yL~~~--Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~D---GGWGEs 661 (763)
T PLN02993 587 EIIKSIEKAVQFIESK--QTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDD---GGWGES 661 (763)
T ss_pred hHHHHHHHHHHHHHHh--cCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCC---CCcCcC
Confidence 5677788777765 57899999999 79999999999999999988664689999999999999997 899988
Q ss_pred cCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC-CCcc
Q 020852 208 FRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI-IFKA 286 (320)
Q Consensus 208 ~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~-~~~~ 286 (320)
+..+....+. ....+-+.+..||+||+||++++.. ..+.++++||++||++.|.+||+|..-+..+ ||+.
T Consensus 662 ~~S~~~~~y~--~~~~~~St~~qTAwAllaL~~aG~~-------~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~ 732 (763)
T PLN02993 662 YLSCPEQRYI--PLEGNRSNLVQTAWAMMGLIHAGQA-------ERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNT 732 (763)
T ss_pred cCcCCCcccc--cCCCCCCchhhHHHHHHHHHHcCCC-------CCCcHHHHHHHHHHHhccCCCCCCCCcceeceECcc
Confidence 7665444332 1111234556799999999988631 1245789999999999999999998866555 9999
Q ss_pred eeeccccccccCCCCCCchhhhcccccC
Q 020852 287 CIFNDIGWKNLGMSKIPMGTGTLGDFPH 314 (320)
Q Consensus 287 ~~l~~~~f~~~~~~~~p~~~~~l~~~~~ 314 (320)
|||+|+.|+++ || |||||+|+.
T Consensus 733 ~~i~Y~~Yr~~----FP--l~ALg~Y~~ 754 (763)
T PLN02993 733 CMLHYATYRNT----FP--LWALAEYRK 754 (763)
T ss_pred ceeccCccchH----HH--HHHHHHHHH
Confidence 99999999999 99 999999974
No 9
>PLN03012 Camelliol C synthase
Probab=99.95 E-value=5.6e-28 Score=250.34 Aligned_cols=206 Identities=15% Similarity=0.213 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccccc-------------------------------chHHhhccccccc-CCC----
Q 020852 87 KLRDKSLKVAMKHINYEDEASRYITIGC-------------------------------VEKPLNMLSCWVE-DPN---- 130 (320)
Q Consensus 87 ~lr~~Al~~~~~~i~~~~~~t~~~~~~p-------------------------------v~~~l~~L~~~~~-~pd---- 130 (320)
.+.+.++.++++||..+|+.+| |++. ...+|.+|..++. .|+
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dG--Gwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~ 586 (759)
T PLN03012 509 KMDPEQLHDAVNILLSLQSKNG--GMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTE 586 (759)
T ss_pred cccHHHHHHHHHHHHhccCCCC--CEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchh
Confidence 3567899999999999997776 4422 1124555555442 232
Q ss_pred --cHHHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccc
Q 020852 131 --SDYFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSM 207 (320)
Q Consensus 131 --~~~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~ 207 (320)
++.+++|++.|++- +.+||+|.+.| ++++|.|+++++||+.+|.+....+.|+||++||+++|..| |+|+++
T Consensus 587 ~i~~~i~rAv~~L~~~--Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~D---GGWGEs 661 (759)
T PLN03012 587 EINAFIKKAAEYIENI--QMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDN---GGWGES 661 (759)
T ss_pred hhHHHHHHHHHHHHHh--cCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCC---CCcCCC
Confidence 46788888888866 57999999999 89999999999999999987654699999999999999997 899988
Q ss_pred cCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC-CCcc
Q 020852 208 FRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI-IFKA 286 (320)
Q Consensus 208 ~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~-~~~~ 286 (320)
+..+...-+. ....+-+.+..||+||+||++++.. ..+.++++||++||++.|.+||+|..-+..+ ||+.
T Consensus 662 ~~Sc~~~~y~--~~~~~~S~~~qTaWAl~aLi~ag~~-------~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~ 732 (759)
T PLN03012 662 YLSCPKKIYI--AQEGEISNLVQTAWALMGLIHAGQA-------ERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKN 732 (759)
T ss_pred CCCCCCcccc--CCCCCCCcHHHHHHHHHHHHHcCCC-------CCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccc
Confidence 8765544331 1111235567799999999988642 1234689999999999999999998866555 9999
Q ss_pred eeeccccccccCCCCCCchhhhcccccC
Q 020852 287 CIFNDIGWKNLGMSKIPMGTGTLGDFPH 314 (320)
Q Consensus 287 ~~l~~~~f~~~~~~~~p~~~~~l~~~~~ 314 (320)
|||+|+.|+++ || |||||+|+.
T Consensus 733 ~~i~Y~~Yr~~----FP--l~ALg~Y~~ 754 (759)
T PLN03012 733 CLLHYAAYRNI----FP--LWALAEYRA 754 (759)
T ss_pred eEEecCccchH----HH--HHHHHHHHH
Confidence 99999999999 99 999999974
No 10
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.95 E-value=4.4e-27 Score=242.64 Aligned_cols=201 Identities=13% Similarity=0.184 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccccc-----------------------------chHHhhcccccccCCCcHHHHHH
Q 020852 87 KLRDKSLKVAMKHINYEDEASRYITIGC-----------------------------VEKPLNMLSCWVEDPNSDYFKKH 137 (320)
Q Consensus 87 ~lr~~Al~~~~~~i~~~~~~t~~~~~~p-----------------------------v~~~l~~L~~~~~~pd~~~v~~~ 137 (320)
...+.+++++++||..+|..+| |++. ...++.+|+..+++++++.++|+
T Consensus 399 ~~~~~~i~ra~~wLl~~Qn~dG--gw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~ra 476 (635)
T TIGR01507 399 RRRRDAMTKAFRWIAGMQSSNG--GWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERA 476 (635)
T ss_pred ccchHHHHHHHHHHHHhcCCCC--CEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3566899999999998886665 3321 12456667777777778899999
Q ss_pred HHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcc
Q 020852 138 LARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGW 216 (320)
Q Consensus 138 l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW 216 (320)
++.|.+. +++||.|++.+ .+++|.|++++.||.++|.+.. ++.|+||++||+++|..| |+|++.+......-.
T Consensus 477 v~~L~~~--Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~-~~~i~rAv~wL~~~Q~~D---GGWge~~~sy~~~~~ 550 (635)
T TIGR01507 477 VEYLKRE--QEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDTR-EPYIQKALAWLESHQNPD---GGWGEDCRSYEDPAY 550 (635)
T ss_pred HHHHHHc--cCCCCCCccCCCCccccHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCC---CCCCCCCcccccccc
Confidence 9999876 57899998888 6899999999999999998765 799999999999999987 888866543321111
Q ss_pred cccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc--ccCCCCcceeeccccc
Q 020852 217 TFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAI--DNLIIFKACIFNDIGW 294 (320)
Q Consensus 217 ~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~af--e~~~~~~~~~l~~~~f 294 (320)
...+.+++..||+||+||+.+... +.++++||++||++.|++||||+.- ...+||..|||+|+.|
T Consensus 551 ----~g~g~s~~s~TA~AL~AL~~ag~~---------~~~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y 617 (635)
T TIGR01507 551 ----AGKGASTASQTAWALIALIAAGRA---------ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMY 617 (635)
T ss_pred ----cCCCCCcHHHHHHHHHHHHHhCCC---------CcHHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccch
Confidence 111335677899999999987631 4588999999999999999999773 4455999999999999
Q ss_pred cccCCCCCCchhhhcccccC
Q 020852 295 KNLGMSKIPMGTGTLGDFPH 314 (320)
Q Consensus 295 ~~~~~~~~p~~~~~l~~~~~ 314 (320)
+++ || |||||+|+.
T Consensus 618 ~~~----fp--l~ALg~y~~ 631 (635)
T TIGR01507 618 RHV----FP--LLALARYKQ 631 (635)
T ss_pred hhH----hH--HHHHHHHHH
Confidence 999 99 999999975
No 11
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.92 E-value=9.8e-26 Score=223.96 Aligned_cols=255 Identities=22% Similarity=0.260 Sum_probs=192.1
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||+|.+++| -+.|. . +++|+.+ +...++++|++.....++..+..+.++..
T Consensus 68 ~~~~~r~~~~p-----------~~~~~---~-~~~~~~~------------~~~~~l~yp~~~~~~r~~~~~~~~~~~~~ 120 (517)
T COG1657 68 MSSWARSSTVP-----------LIAPA---S-DPLLTEG------------VKNVLLLYPTSGDVERLLLLLDHYFKRGF 120 (517)
T ss_pred HHHHhhhcccc-----------ccccc---c-ccccccc------------ccceeEEcCCcchHHHHHHHHHHHHhhcc
Confidence 58999999999 11111 1 4444443 22346678888755555555555444433
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccc-cCCCc-HHHHHHHHHHhhhhhhcCCCcee-ccC
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWV-EDPNS-DYFKKHLARITEYFWVGEDGLRV-QSF 157 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~-~~pd~-~~v~~~l~~l~~~l~~~~dG~~~-q~~ 157 (320)
..++.+++.+ +.+..|+...|+.++ -+.+++|++++++.... ...++ ..++++..+..++.+....|+.+ +.+
T Consensus 121 -~~~~~~~~~~--~~a~l~~~e~Qn~dg-~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (517)
T COG1657 121 -PAPVTSLRVR--KEAELWKLERQNDDG-SWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLL 196 (517)
T ss_pred -Cccchhhhhh--hhhheeeeeeccccc-ccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhccccccccccc
Confidence 3344566666 445555555554443 36788887776644432 22333 56777777777777777777665 455
Q ss_pred CChhhHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 158 GSQTWDCALAVQALLACNLTDEIG-PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~~~-~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
++|+|||+|+.+++.++|.... + ++|.||..||.++|+... ++|..+ ++.++|||+|++.+++|||.|||+.+++
T Consensus 197 ~~q~wD~~f~~~~~~~~g~~~~-~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~ 272 (517)
T COG1657 197 GSQVWDGGFIRRALLVAGLAET-PIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVR 272 (517)
T ss_pred ccccccchhhhhhhhhcCcccc-chHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhhHHHH
Confidence 9999999999999999999876 5 899999999999999875 899988 9999999999999999999999999999
Q ss_pred HHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccccCCCCCC
Q 020852 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIP 303 (320)
Q Consensus 237 AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~~~~~~p 303 (320)
++..++ +.+.+.++++|++.|||..|||++|+..+ ..-+++..|..+.++-.+|
T Consensus 273 al~~~~-----------~~~~~~~~l~~V~~~q~~~g~~a~~e~~~--~~a~~~~L~~~~~~~~~~~ 326 (517)
T COG1657 273 ALIGVQ-----------SLPNFELGLDWVLYMQNKLGGLAVYEDRN--LHAWLRLLPPAEVKAMVDP 326 (517)
T ss_pred HHHhhc-----------chhhHHhhhhHhhhcccccCceeeecccc--ccHHHhhCCHhhccccccC
Confidence 998876 34678889999999999999999999998 8899999999999766666
No 12
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.92 E-value=1.3e-24 Score=224.07 Aligned_cols=200 Identities=15% Similarity=0.190 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccc---------------c----------------chHHhhcccccccC--CCcHHH
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIG---------------C----------------VEKPLNMLSCWVED--PNSDYF 134 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~---------------p----------------v~~~l~~L~~~~~~--pd~~~v 134 (320)
..+.+++++.+||...|..+| |++ | ...+|.+|..+++. ...+.+
T Consensus 385 ~~~~~l~~a~~~Ll~~Qn~dG--Gw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i 462 (621)
T TIGR01787 385 VKRDRLRDAVNWILGMQSSNG--GFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVL 462 (621)
T ss_pred ccHHHHHHHHHHHHHHcCCCC--CEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHH
Confidence 455677888888888776655 232 2 12245556555532 224678
Q ss_pred HHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCC
Q 020852 135 KKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISK 213 (320)
Q Consensus 135 ~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 213 (320)
+|+++.|.+. +.+||.|.+.+ .+++|.|++++.||.++|.....++.++||++||+++|..| |+|++.+.....
T Consensus 463 ~rAl~~L~~~--Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~D---GGWge~~~s~~~ 537 (621)
T TIGR01787 463 ERALEYLRRE--QRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPD---GGWGEDCFSYED 537 (621)
T ss_pred HHHHHHHHHh--cCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCC---CCCCcCCccccc
Confidence 8999888876 57899998888 57899999999999999976443589999999999999987 888766533222
Q ss_pred CcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccccc--CCCCcceeecc
Q 020852 214 GGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDN--LIIFKACIFND 291 (320)
Q Consensus 214 GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~--~~~~~~~~l~~ 291 (320)
..+ ...+-+++..||+||+||+++.. ...++++||++||+++|++||||+.-.. ..|+..|||+|
T Consensus 538 ~~y----~~~~~S~~s~Ta~AL~AL~~ag~---------~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y 604 (621)
T TIGR01787 538 PSY----VGSGGSTPSQTGWALMALIAAGE---------ADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKY 604 (621)
T ss_pred ccc----CCCCCCCHHHHHHHHHHHHHcCc---------cchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecc
Confidence 111 11122677889999999998753 1357899999999999999999976333 33559999999
Q ss_pred ccccccCCCCCCchhhhccccc
Q 020852 292 IGWKNLGMSKIPMGTGTLGDFP 313 (320)
Q Consensus 292 ~~f~~~~~~~~p~~~~~l~~~~ 313 (320)
+.|+++ || |||||+|+
T Consensus 605 ~~Y~~~----fp--l~ALg~y~ 620 (621)
T TIGR01787 605 TNYRNI----FP--LWALGRYR 620 (621)
T ss_pred cccchh----hH--HHHHHHHh
Confidence 999999 99 99999996
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.92 E-value=1.8e-24 Score=223.46 Aligned_cols=198 Identities=16% Similarity=0.177 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccccc-------------------------------chHHhhcccccccC-CC-----
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIGC-------------------------------VEKPLNMLSCWVED-PN----- 130 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~p-------------------------------v~~~l~~L~~~~~~-pd----- 130 (320)
..+.+++++.+||..+|+.+| |++. ...+|.+|+.++.. ++
T Consensus 397 ~~~~~l~~av~~Ll~~Qn~dG--Gw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~ 474 (634)
T TIGR03463 397 VPQARLQDAVEFILSRQNEDG--GFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGR 474 (634)
T ss_pred ccHHHHHHHHHHHHHhcCCCC--CEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhH
Confidence 345688888889888887655 2321 02356666666533 32
Q ss_pred -cHHHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCccccc
Q 020852 131 -SDYFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMF 208 (320)
Q Consensus 131 -~~~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~ 208 (320)
.+.++++++.|.+. +.+||.|.+.+ .+.+|.|+++++||.++|.+.+ ++.++||++||+++|..| |+|++.+
T Consensus 475 i~~ai~rav~~L~~~--Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~-~~~i~rA~~~Ll~~Q~~D---GgWg~~~ 548 (634)
T TIGR03463 475 ITRAISRGVRFLRSR--QREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPD-DMALQRAAAWLRSYQRAD---GGWGEVY 548 (634)
T ss_pred HHHHHHHHHHHHHHh--cCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCC---CCccCcc
Confidence 24577777777665 56899998888 5889999999999999998766 789999999999999987 8887655
Q ss_pred CCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC-CCcce
Q 020852 209 RHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI-IFKAC 287 (320)
Q Consensus 209 ~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~-~~~~~ 287 (320)
.......+ ...+-+.+..||+||+||+.++. .+.++++||++||++.|++||||+.-+..+ ||+.|
T Consensus 549 ~s~~~~~y----~~~~~S~~~~TA~Al~aL~~~g~---------~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~ 615 (634)
T TIGR03463 549 ESCLQARY----VEGKQSQAVMTSWALLALAEAGE---------GGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTA 615 (634)
T ss_pred Cccccccc----cCCCCCcHHHHHHHHHHHHHcCC---------cCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcce
Confidence 43322222 11223567789999999988652 246889999999999999999999855434 99999
Q ss_pred eeccccccccCCCCCCchhhhcccc
Q 020852 288 IFNDIGWKNLGMSKIPMGTGTLGDF 312 (320)
Q Consensus 288 ~l~~~~f~~~~~~~~p~~~~~l~~~ 312 (320)
||+|+.|+++ || |||||+|
T Consensus 616 ~l~Y~~Y~~~----fp--l~ALg~y 634 (634)
T TIGR03463 616 MLDYDLYLRY----FP--TWALAVC 634 (634)
T ss_pred eEecCccchH----hH--HHHhhcC
Confidence 9999999999 99 9999998
No 14
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.90 E-value=5.6e-23 Score=212.84 Aligned_cols=201 Identities=15% Similarity=0.192 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cccccc----------------------------chHHhhcccccccC-CCc-----H
Q 020852 88 LRDKSLKVAMKHINYEDEASR-YITIGC----------------------------VEKPLNMLSCWVED-PNS-----D 132 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~-~~~~~p----------------------------v~~~l~~L~~~~~~-pd~-----~ 132 (320)
..+.+++++.+||..+|..+| |....+ ...++.+|..++.. +++ +
T Consensus 397 ~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~ 476 (634)
T cd02892 397 VSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDP 476 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHH
Confidence 456788888888888776555 211111 11345556665544 332 5
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI 211 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~ 211 (320)
.++++++.|.+. +.+||.|.+.+ .+.+|.|+++++||..+|.....++.++||++||+++|..| |+|++.+...
T Consensus 477 ~i~rAv~~L~~~--Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D---GgWge~~~s~ 551 (634)
T cd02892 477 AIRRAVKYLLRE--QEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD---GGWGESYLSY 551 (634)
T ss_pred HHHHHHHHHHHc--cCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC---CCCCCccccc
Confidence 677888877765 46899999888 58899999999999999986233789999999999999987 7887654432
Q ss_pred CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC-CCcceeec
Q 020852 212 SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI-IFKACIFN 290 (320)
Q Consensus 212 ~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~-~~~~~~l~ 290 (320)
..+.+ ...+-+.+.+||+||+||+.+.. .+.+.++++++||+++|++||||..-+.++ +++.|||+
T Consensus 552 ~~~~~----~~~~~s~~~~TA~AllaLl~~g~---------~~~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~ 618 (634)
T cd02892 552 EDKSY----AGGGRSTVVQTAWALLALMAAGE---------PDSEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIR 618 (634)
T ss_pred cCccc----CCCCCCcHHHHHHHHHHHHHcCC---------CChHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeec
Confidence 22211 12233567789999999988653 256899999999999999999998844433 56779999
Q ss_pred cccccccCCCCCCchhhhcccc
Q 020852 291 DIGWKNLGMSKIPMGTGTLGDF 312 (320)
Q Consensus 291 ~~~f~~~~~~~~p~~~~~l~~~ 312 (320)
|+.|+++ || |||||+|
T Consensus 619 y~~Y~~~----fp--l~ALg~y 634 (634)
T cd02892 619 YHNYRNY----FP--LWALGRY 634 (634)
T ss_pred cCchhhH----hH--HHHhhcC
Confidence 9999999 99 9999998
No 15
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.84 E-value=5.4e-21 Score=192.61 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=144.3
Q ss_pred HHhhcccccc-cCCCcH--H----HHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHH
Q 020852 117 KPLNMLSCWV-EDPNSD--Y----FKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAH 188 (320)
Q Consensus 117 ~~l~~L~~~~-~~pd~~--~----v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~ 188 (320)
+++.+|.++. .-|+|. + +.+|++.|++. +.+||+|.+.| .|.+|.|.|++.+|+++|...++.+.++||+
T Consensus 567 s~I~aL~~F~k~~p~~r~~Ei~~~i~~av~~ie~~--Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~ 644 (760)
T KOG0497|consen 567 SAIQALVYFHKLFPGHRKKEIEKSIEKAVEFIEKL--QLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKAC 644 (760)
T ss_pred HHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHH
Confidence 3566667764 337773 3 44555555554 46899999999 7999999999999999999888799999999
Q ss_pred HHHHhcccCCCCCCCcccccCCCCCC-cccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh
Q 020852 189 DFLKNSQVTDNPQGDFRSMFRHISKG-GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS 267 (320)
Q Consensus 189 ~wL~~~Q~~~~~~Gdw~~~~~~~~~G-GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~ 267 (320)
+||++.|..+ |+|++++-.+... +=.+..+. ..++.|++|++||+..+... .+.-.+.||++.|+.
T Consensus 645 ~Fll~~Q~~~---GGWgEs~lscp~~~Yi~~~gn~---s~vv~T~wAlm~Li~~~q~~-------rd~~P~hr~ak~lin 711 (760)
T KOG0497|consen 645 DFLLSKQNPD---GGWGESYLSCPEKRYIPLEGNK---SNVVQTAWALMALIMAGQAE-------RDPLPLHRAAKVLIN 711 (760)
T ss_pred HHHHhhhccc---CCCccccccCcccccccccccc---ccchhHHHHHHHHHhcCCcc-------cccchHHHHHHHHHh
Confidence 9999999987 8999998665543 23333222 57899999999999876421 233479999999999
Q ss_pred cccCCCCccccccCC-CCcceeeccccccccCCCCCCchhhhcccccCC
Q 020852 268 IQVRKQRYRAIDNLI-IFKACIFNDIGWKNLGMSKIPMGTGTLGDFPHS 315 (320)
Q Consensus 268 ~Qn~dGGW~afe~~~-~~~~~~l~~~~f~~~~~~~~p~~~~~l~~~~~~ 315 (320)
.|-.||-|+.++..+ |++.|.|+|+-|+++ || |||||+|++.
T Consensus 712 sQ~~nGdfpqq~i~g~f~~~~~~~y~~yr~~----F~--~waL~~y~~~ 754 (760)
T KOG0497|consen 712 SQLENGDFPQQEIEGVFNKNCMIHYPTYRNI----FP--IWALGEYRKA 754 (760)
T ss_pred cccccCCcchhHHHHHhhhhhhhccchhhhh----cc--HHHHHHHHHH
Confidence 999999999999877 999999999999999 99 9999999753
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.81 E-value=1.5e-19 Score=173.20 Aligned_cols=154 Identities=35% Similarity=0.579 Sum_probs=124.6
Q ss_pred HHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCC
Q 020852 135 KKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKG 214 (320)
Q Consensus 135 ~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~G 214 (320)
.++++.|.+- +.+||.|.... +.+|+|+++++||.++|..+++.+.++||++||+++|.... .++|...+++.+.|
T Consensus 2 ~~~~~~L~~~--Q~~dG~W~~~~-~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~-~~~~~~~~~~~~~G 77 (348)
T cd02889 2 RRALDFLLSL--QAPDGHWPGEY-SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDN-PDDWKVKYRHLRKG 77 (348)
T ss_pred chHHHHHHHh--ccCCCCccccC-CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCC-CCchhhcCCCCCCC
Confidence 5778877766 56899886433 89999999999999999866668999999999999997654 34577888889999
Q ss_pred cccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccc
Q 020852 215 GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGW 294 (320)
Q Consensus 215 GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f 294 (320)
||+|+...+++||+|+|+.+++||+.+...++ .+..+..+.++++++||+++|++||||..|+..+ ...|+++.+.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~--~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~--~~~~~~~~~~ 153 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPP--DGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDN--TYKYLELIPE 153 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCc--ccchhhHHHHHHHHHHHHHhccCCCCEeeecCCc--cHHHHhcCch
Confidence 99999888889999999999999998875321 1234578999999999999999999999988765 4445454444
Q ss_pred cc
Q 020852 295 KN 296 (320)
Q Consensus 295 ~~ 296 (320)
.+
T Consensus 154 ~~ 155 (348)
T cd02889 154 VD 155 (348)
T ss_pred hh
Confidence 43
No 17
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.80 E-value=7.6e-19 Score=168.37 Aligned_cols=200 Identities=15% Similarity=0.210 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cccccc--------------------------chHHhhcccccccCCCc------HHH
Q 020852 88 LRDKSLKVAMKHINYEDEASR-YITIGC--------------------------VEKPLNMLSCWVEDPNS------DYF 134 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~-~~~~~p--------------------------v~~~l~~L~~~~~~pd~------~~v 134 (320)
....+++.+.+||...|..+| |....+ ...+|.+|...+...+. +.+
T Consensus 114 ~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i 193 (348)
T cd02889 114 VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAI 193 (348)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 455677777777776665444 221111 23345555555544333 567
Q ss_pred HHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCC
Q 020852 135 KKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISK 213 (320)
Q Consensus 135 ~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 213 (320)
+++++.|.+. +.+||.|.+.+ .+.+|.|+++++||..+|.... ++.++++++||+++|..+ |+|+........
T Consensus 194 ~~a~~~L~~~--q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~d---G~w~~~~~~~~~ 267 (348)
T cd02889 194 RRAVKYLERE--QEPDGSWYGRWGVCFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNPD---GGWGESYESYED 267 (348)
T ss_pred HHHHHHHHHh--CCCCCCccccCCCcchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCC---CCcCCccccccc
Confidence 7888877765 45788887766 5788999999999999997644 789999999999999986 777643321111
Q ss_pred CcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccc-cCCCCcceeeccc
Q 020852 214 GGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAID-NLIIFKACIFNDI 292 (320)
Q Consensus 214 GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe-~~~~~~~~~l~~~ 292 (320)
+.+ ....-|++..||.+|+||+.... .+.+.++++++||+++||+||||.+=. ...+.+.+++.++
T Consensus 268 ~~~----~~~~~~~~~~Ta~al~aL~~~g~---------~~~~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~ 334 (348)
T cd02889 268 PSY----AGGGRSTVVQTAWALLALMAAGE---------PDSEAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYIRYH 334 (348)
T ss_pred ccc----cCCCCCcHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHhcCCCCCcCCceeeeeecceeeeccC
Confidence 111 11234688899999999987653 156889999999999999999998732 2335578999999
Q ss_pred cccccCCCCCCchhhhcccc
Q 020852 293 GWKNLGMSKIPMGTGTLGDF 312 (320)
Q Consensus 293 ~f~~~~~~~~p~~~~~l~~~ 312 (320)
.|..+ || |+|||+|
T Consensus 335 ~~~~~----~~--~~~~~~~ 348 (348)
T cd02889 335 NYRNY----FP--LWALGRY 348 (348)
T ss_pred ccchH----hH--HHHhhcC
Confidence 99999 99 9999987
No 18
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.63 E-value=5.3e-15 Score=139.49 Aligned_cols=163 Identities=10% Similarity=0.037 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc-c----------------ccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCC
Q 020852 88 LRDKSLKVAMKHINYEDEASRYIT-I----------------GCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGED 150 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~-~----------------~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~d 150 (320)
+.+.+++++++||..+|..+|.++ . ....-++.+|...+..++++.++++++.|.+.+. +
T Consensus 99 v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~---~ 175 (292)
T cd02897 99 IDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALD---S 175 (292)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhcc---c
Confidence 456788888888877776554111 1 0112244455556666678899999998876521 1
Q ss_pred CceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc
Q 020852 151 GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC 230 (320)
Q Consensus 151 G~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~ 230 (320)
.+++|+|++++.||+.+|. ++ . .+++++|+..+..++..|+|.+. +.++||.+...+...+++++
T Consensus 176 -------~~~~y~~al~a~AL~~~~~-~~-~---~~~~~~l~~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~~~~ve~ 240 (292)
T cd02897 176 -------ISDPYTLALAAYALTLAGS-EK-R---PEALKKLDELAISEDGTKHWSRP---PPSEEGPSYYWQAPSAEVEM 240 (292)
T ss_pred -------CCCHHHHHHHHHHHHHcCC-cc-H---HHHHHHHHHHHhccCCCCCCCcC---CCcccccccCCCCCcchHHH
Confidence 4688999999999999993 22 2 34444444444433223789876 23566666666666789999
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
||+||+||+.... ...+.+.++|+||.++||.+|||++
T Consensus 241 TAyaLlall~~~~---------~~~~~~~~~v~WL~~~q~~~Ggf~s 278 (292)
T cd02897 241 TAYALLALLSAGG---------EDLAEALPIVKWLAKQRNSLGGFSS 278 (292)
T ss_pred HHHHHHHHHHcCC---------ccHhHHHHHHHHHHHcCCCCCCccc
Confidence 9999999987652 1358899999999999999999976
No 19
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.55 E-value=7.1e-15 Score=118.49 Aligned_cols=109 Identities=23% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHH--HHHHHhcccCCCCCCCcccccCCCCCCc
Q 020852 139 ARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKA--HDFLKNSQVTDNPQGDFRSMFRHISKGG 215 (320)
Q Consensus 139 ~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA--~~wL~~~Q~~~~~~Gdw~~~~~~~~~GG 215 (320)
+.|.+. +.+||.|.... .+.+++|++++.||.+.|...+ .+++ ++||+++|.++ |+|
T Consensus 2 ~~L~~~--Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~~----~~~~~~~~~L~~~q~~d---Gg~----------- 61 (113)
T PF13249_consen 2 DWLLSR--QNPDGGWGGFGGPSDVWDTAFALLALAALGEEPD----RDRAAAVEWLLSQQNPD---GGW----------- 61 (113)
T ss_dssp HHHHHH--B-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHHC----HHHHHHHHHHHHHB-TT---SGB-----------
T ss_pred HhhHHH--cCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCccc----HHHHHHHHHHHHhCCCC---CCc-----------
Confidence 444443 56899887633 7899999999999999997654 4555 99999999975 444
Q ss_pred ccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 216 WTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 216 W~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.. ..+..-++++.|+.++.+|..+... ...+.+++|++||+++|++||||+.
T Consensus 62 -~~-~~~~~~~~~~~t~~~l~~l~~~~~~--------~~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 62 -GS-NPDGGPPDVYTTYVALAALELLGRP--------DDEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp -BS-STTTT-BSHHHHHHHHHHHHHHT-G--------GCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred -cC-CCCCCCccHHHHHHHHHHHHHcCCC--------cccHHHHHHHHHHHHhcCCCCCCCc
Confidence 32 2223346888999999999777631 1257899999999999999999974
No 20
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.30 E-value=3.5e-12 Score=127.65 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=135.2
Q ss_pred cHHHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccC
Q 020852 131 SDYFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFR 209 (320)
Q Consensus 131 ~~~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~ 209 (320)
+..++++++.|..- +.++|.|...| .+.+|.|++++.+|...|..+++.+.+++++.||..+|+++ |+|++.+.
T Consensus 351 ~~~i~~a~e~LL~~--Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~---~Gw~e~~~ 425 (517)
T COG1657 351 GQPIERALEWLLSD--QEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPD---GGWGEAKE 425 (517)
T ss_pred CCcccHHHhhhhhh--ccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccC---CCcccccc
Confidence 55688888877754 46899999999 89999999999999999999888899999999999999997 78988776
Q ss_pred CCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccC-CCCccee
Q 020852 210 HISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNL-IIFKACI 288 (320)
Q Consensus 210 ~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~-~~~~~~~ 288 (320)
.++..-..++ +-+-.+.|++|+.+++..... +.+.++++++.+.+-|.++|.|..=+.. .||.+|+
T Consensus 426 ~~~~~~~~~t----~~sl~~~~~wal~~~~~a~~~---------~~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~ 492 (517)
T COG1657 426 AISDPVYTGT----ESSLLVQTNWALIALLTALEP---------NQEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFA 492 (517)
T ss_pred cccccccccc----cchhhcchhHHHHHHHHhccc---------chhhhcccccccccCcCCCCccccceecccCCCCcc
Confidence 6655544333 224567899999999887631 4566999999999999999999664333 5999999
Q ss_pred eccccccccCCCCCCchhhhcccccCCCc
Q 020852 289 FNDIGWKNLGMSKIPMGTGTLGDFPHSGR 317 (320)
Q Consensus 289 l~~~~f~~~~~~~~p~~~~~l~~~~~~~~ 317 (320)
+.|+-|..+ || +.+||+|.++-|
T Consensus 493 ~~~~~~~~~----~p--~~~lg~y~~~~~ 515 (517)
T COG1657 493 IGYPYYLAY----FP--IIALGRYGGQYR 515 (517)
T ss_pred eeeeeEEee----cC--chhhcccccccc
Confidence 999999988 99 999999987644
No 21
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.30 E-value=3.1e-11 Score=110.30 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=96.2
Q ss_pred CCcHHHHHHHHHHhhhhhhcCCCceeccC---CChhhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhcccCCCCCCCc
Q 020852 129 PNSDYFKKHLARITEYFWVGEDGLRVQSF---GSQTWDCALAVQALLACNLTD-EIGPILMKAHDFLKNSQVTDNPQGDF 204 (320)
Q Consensus 129 pd~~~v~~~l~~l~~~l~~~~dG~~~q~~---~s~vWdTa~a~~AL~~aG~~~-~~~~~l~kA~~wL~~~Q~~~~~~Gdw 204 (320)
.....+++++++|.++ +.+||.+.... .+.+|.|++++++|...+... ...+.++|+++||.++|..+ |+|
T Consensus 49 ~~~~~~~~~~~~l~~~--q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~ 123 (300)
T cd00688 49 KADENIEKGIQRLLSY--QLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGF 123 (300)
T ss_pred cchHHHHHHHHHHHhc--cCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCe
Confidence 3556799999999887 46788665332 468999999999999987531 22678999999999999976 677
Q ss_pred ccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCc
Q 020852 205 RSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 205 ~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW 275 (320)
....+...+ .....+++++|+.+|.+|..+... ...+.++++++||.+.|++||||
T Consensus 124 ~~~~~~~~~-------~~~~~~~~~~t~~al~aL~~~~~~--------~~~~~~~~~~~~l~~~q~~~g~~ 179 (300)
T cd00688 124 REDGPGNHR-------IGGDESDVRLTAYALIALALLGKL--------DPDPLIEKALDYLLSCQNYDGGF 179 (300)
T ss_pred eeecCCCCc-------ccCCCCcccHHHHHHHHHHHcCCC--------CCcHHHHHHHHHHHHHhcCCCCc
Confidence 544332111 122347889999999999887631 12678999999999999999999
No 22
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.29 E-value=2e-11 Score=111.55 Aligned_cols=123 Identities=25% Similarity=0.289 Sum_probs=97.0
Q ss_pred HHHHHHHhhhhhhcCCCceecc-CCChhhHHHHHHHHHHHcCCC----CCccHHHHHHHHHHHhcccCCCCCCCcccccC
Q 020852 135 KKHLARITEYFWVGEDGLRVQS-FGSQTWDCALAVQALLACNLT----DEIGPILMKAHDFLKNSQVTDNPQGDFRSMFR 209 (320)
Q Consensus 135 ~~~l~~l~~~l~~~~dG~~~q~-~~s~vWdTa~a~~AL~~aG~~----~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~ 209 (320)
.++++.|.++ ..++|.+.+. |.+++|.|+++++++...+.. .+....++++++||++.|..+
T Consensus 2 ~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d----------- 68 (300)
T cd00688 2 EKHLKYLLRY--PYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD----------- 68 (300)
T ss_pred hhHHHHHHHc--cccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC-----------
Confidence 4677877777 3567766555 589999999999999998763 245789999999999999764
Q ss_pred CCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccC
Q 020852 210 HISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNL 281 (320)
Q Consensus 210 ~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~ 281 (320)
|||++..... .+++..|+.++++|..+.... ..+.+.++++++||++.|++||||..+...
T Consensus 69 ----G~~~~~~~~~-~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~ 129 (300)
T cd00688 69 ----GGFSGWGGND-YPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNEDGGFREDGPG 129 (300)
T ss_pred ----CCccCCCCCC-CcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCCCCCeeeecCC
Confidence 5555543222 689999999999999876421 346789999999999999999999987654
No 23
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.12 E-value=2.9e-11 Score=97.18 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISK 213 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 213 (320)
|+++++.|.+- +.+||.|...+.+.+..|++++.+|...|.. ...++|+||++||+++|..|
T Consensus 1 i~~~~~~l~~~--Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~d--------------- 62 (109)
T PF13243_consen 1 IKRAAEWLLSQ--QNPDGSWGYNWGSDVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPD--------------- 62 (109)
T ss_dssp ------------------------------------------TS--SSBSSHHHHHHHHH---TT---------------
T ss_pred Ccccccccccc--ccccccccccccccccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCC---------------
Confidence 45666666544 4689999766666788899999999999855 45889999999999999875
Q ss_pred CcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc
Q 020852 214 GGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV 270 (320)
Q Consensus 214 GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn 270 (320)
|||++. +...+.+|+.++.+|..... ...+++++||++||++-|.
T Consensus 63 G~w~~~----~~~~~~~t~~~~~~l~~~~~--------~~~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 63 GGWGYS----GGEYVSMTAAAIAALALAGV--------YPDDEAVERGLEWILSHQL 107 (109)
T ss_dssp S--S-T----S--HHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHHHH--
T ss_pred CCCCCc----CCCCHHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHccC
Confidence 445443 11235578888777755442 2268999999999999875
No 24
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.05 E-value=1.7e-09 Score=102.58 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhhhhcCCCcee--ccCCChhhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhcccCCCCCCCcccccCC
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QSFGSQTWDCALAVQALLACNLTD-EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRH 210 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~~~s~vWdTa~a~~AL~~aG~~~-~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~ 210 (320)
|++++.++..| +.+||.|- ..+.+.+|-|+|++.+|.++.... -..+.|+||++||.++|..+ |+|.+..+.
T Consensus 54 i~~g~~r~l~~--q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~~ 128 (297)
T cd02896 54 IRQGYQRQLSY--RKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSPV 128 (297)
T ss_pred HHHHHHHHHhc--cCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCCc
Confidence 78899999888 56888662 233678999999999999875321 12678999999999999976 899876543
Q ss_pred CC---CCcccccCCCCCCCCCcccHHHHHHHHHhcC
Q 020852 211 IS---KGGWTFSNKDHGWPVSDCSSESFLCCLHLST 243 (320)
Q Consensus 211 ~~---~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~ 243 (320)
.. .||+.. ..++++.||.++.||.....
T Consensus 129 ~~~~m~gg~~~-----~~~~~~lTA~vl~aL~~~~~ 159 (297)
T cd02896 129 IHREMTGGVEG-----SEGDVSLTAFVLIALQEARS 159 (297)
T ss_pred cChhccCCccc-----cCCCccchHHHHHHHHhhhc
Confidence 32 245532 23688999999999988753
No 25
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.01 E-value=4.3e-09 Score=99.83 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 020852 132 DYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI 211 (320)
Q Consensus 132 ~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~ 211 (320)
+.+.++++.|.+- .+. ...+|.++++..||+-+|.+ ..++|.++|++.|+.+ |+|...+..
T Consensus 170 ~~i~rA~~yL~~~----~~~------~~~~Y~~Al~ayALal~~~~-----~~~~a~~~L~~~~~~d---~~~~~~~~~- 230 (297)
T cd02896 170 QSIRKAISYLENQ----LPN------LQRPYALAITAYALALADSP-----LSHAANRKLLSLAKRD---GNGWYWWTI- 230 (297)
T ss_pred HHHHHHHHHHHHh----ccc------CCChHHHHHHHHHHHHcCCh-----hhHHHHHHHHHHhhhC---CCcceeccC-
Confidence 4577777765543 111 45779999999999998843 5789999999999987 566544432
Q ss_pred CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 212 SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 212 ~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
....|.... ..--++..||+||+|++..+. .+...++|+||.+.||.+|||.+
T Consensus 231 ~~~~~~~~~--~~~~~vE~TAYALLall~~~~-----------~~~a~~iv~WL~~qr~~~Ggf~s 283 (297)
T cd02896 231 DSPYWPVPG--PSAITVETTAYALLALLKLGD-----------IEYANPIARWLTEQRNYGGGFGS 283 (297)
T ss_pred cCccCCCCC--CchhhhHHHHHHHHHHHhcCC-----------chhHHHHHHHHHhcCCCCCCeeh
Confidence 112221110 001267889999999987642 35688899999999999999976
No 26
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.97 E-value=1.7e-08 Score=94.87 Aligned_cols=161 Identities=12% Similarity=-0.006 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHH-HhhcCCCCcc----ccccchHHhhcccccccC-CCcHHHHHHHHHHhhhhhhcCCCceecc-C-C
Q 020852 87 KLRDKSLKVAMKHI-NYEDEASRYI----TIGCVEKPLNMLSCWVED-PNSDYFKKHLARITEYFWVGEDGLRVQS-F-G 158 (320)
Q Consensus 87 ~lr~~Al~~~~~~i-~~~~~~t~~~----~~~pv~~~l~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~~dG~~~q~-~-~ 158 (320)
..|+++++++...+ +.++..+... .+.....++.+|...+.+ -+....++.++.|.+. +.+||.+-.. . .
T Consensus 47 ~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~--q~~dGgf~~~~~~~ 124 (286)
T cd02890 47 ENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSL--QNPDGSFRGDLGGE 124 (286)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHh--cCCCCCcccCCCCC
Confidence 34666666666655 4433222210 011123455556665542 1222356677777654 4678866432 3 5
Q ss_pred ChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHH
Q 020852 159 SQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCC 238 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL 238 (320)
+.++-|-.|+.+|...|... ...++++++||+++|..| |+| +.... .=+|.--|.+|+.+|
T Consensus 125 ~d~~~ty~al~~l~ll~~~~--~~~~~~~~~~l~~~Q~~d---GGf------------~~~~~--~es~~~~t~~av~sL 185 (286)
T cd02890 125 VDTRFVYCALSILSLLNILT--DIDKEKLIDYILSCQNYD---GGF------------GGVPG--AESHGGYTFCAVASL 185 (286)
T ss_pred chHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHhCCCC---CCc------------CCCCC--CCCCccHhHHHHHHH
Confidence 77888888999999998764 467999999999999875 444 33221 124555699999999
Q ss_pred HHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC-Cccc
Q 020852 239 LHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ-RYRA 277 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG-GW~a 277 (320)
..++.. +...+++.++||++.|+.+| |+..
T Consensus 186 ~~l~~~---------~~~~~~~~~~~L~~~q~~~ggGf~g 216 (286)
T cd02890 186 ALLGRL---------DLIDKERLLRWLVERQLASGGGFNG 216 (286)
T ss_pred HHcCCC---------cccCHHHHHHHHHHhCCCCCCCcCC
Confidence 887641 24568899999999999998 7643
No 27
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.93 E-value=1.7e-10 Score=92.67 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHH
Q 020852 184 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAAN 263 (320)
Q Consensus 184 l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~ 263 (320)
|+++++||++.|.+| | +|+++.. .++..|+.++.+|..+.. ....++|++|++
T Consensus 1 i~~~~~~l~~~Q~~d---G------------~W~~~~~----~~~~~t~~~~~al~~~~~--------~~~~~ai~ka~~ 53 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPD---G------------SWGYNWG----SDVFVTAALILALAAAGD--------AAVDEAIKKAID 53 (109)
T ss_dssp -----------------------------------------------------------T--------S-SSBSSHHHHH
T ss_pred Ccccccccccccccc---c------------ccccccc----ccccccccccccccccCC--------CCcHHHHHHHHH
Confidence 689999999999986 4 4544321 467779999989887653 235788999999
Q ss_pred HHHhcccCCCCcccc
Q 020852 264 FMLSIQVRKQRYRAI 278 (320)
Q Consensus 264 wLl~~Qn~dGGW~af 278 (320)
||++.|++||||+..
T Consensus 54 ~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 54 WLLSHQNPDGGWGYS 68 (109)
T ss_dssp HHHH---TTS--S-T
T ss_pred HHHHhcCCCCCCCCc
Confidence 999999999999976
No 28
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.90 E-value=1.4e-09 Score=87.51 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=48.5
Q ss_pred HHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh
Q 020852 188 HDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS 267 (320)
Q Consensus 188 ~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~ 267 (320)
++||+++|.+| |||++. ...|++.+|+.||.||..+... .+.+++. |++||++
T Consensus 1 v~~L~~~Q~~d---------------Ggw~~~---~~~~~~~~T~~al~aL~~~g~~--------~~~~~~~-~~~~L~~ 53 (113)
T PF13249_consen 1 VDWLLSRQNPD---------------GGWGGF---GGPSDVWDTAFALLALAALGEE--------PDRDRAA-AVEWLLS 53 (113)
T ss_dssp HHHHHHHB-TT---------------SSBBSS---TS-BEHHHHHHHHHHHHHHTSH--------HCHHHHH-HHHHHHH
T ss_pred CHhhHHHcCCC---------------CCCcCC---CCCCCHHHHHHHHHHHHHhCCc--------ccHHHHH-HHHHHHH
Confidence 68999999986 556543 4458999999999999988741 1233333 5999999
Q ss_pred cccCCCCcccccc
Q 020852 268 IQVRKQRYRAIDN 280 (320)
Q Consensus 268 ~Qn~dGGW~afe~ 280 (320)
+|++||||..+..
T Consensus 54 ~q~~dGg~~~~~~ 66 (113)
T PF13249_consen 54 QQNPDGGWGSNPD 66 (113)
T ss_dssp HB-TTSGBBSSTT
T ss_pred hCCCCCCccCCCC
Confidence 9999999999653
No 29
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.87 E-value=2e-09 Score=101.27 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=56.3
Q ss_pred CCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccccCCC
Q 020852 227 VSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMS 300 (320)
Q Consensus 227 d~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~~~~ 300 (320)
|-+.|...|+-|+.+-.. .+.+...+++.||++|||+||++||||++|.+.+ .-|.++|+|.|..|.
T Consensus 42 DN~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~---~~Y~~~ITfND~am~ 108 (290)
T TIGR02474 42 DNGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLK---GGYSDAITYNDNAMV 108 (290)
T ss_pred cCccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCc---CCcccccccCcHHHH
Confidence 556799999988887532 2456788999999999999999999999999987 489999999998554
No 30
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.83 E-value=3.1e-08 Score=92.13 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhhhhhcCCCce--eccC-CChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhcccCCCCCCCccc
Q 020852 132 DYFKKHLARITEYFWVGEDGLR--VQSF-GSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKNSQVTDNPQGDFRS 206 (320)
Q Consensus 132 ~~v~~~l~~l~~~l~~~~dG~~--~q~~-~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~ 206 (320)
..+++++++|..+ +.+||.| ..+. .+.+|.|++++++|.+++. ..+ .+.|+||++||.++|..+ |+|.+
T Consensus 49 ~~i~~~~~~l~~~--Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~-~~~i~ra~~~L~~~q~~~---g~~~~ 122 (282)
T cd02891 49 EYIRKGYQRLLTY--QRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVD-ENVLARALGWLVPQQKED---GSFRE 122 (282)
T ss_pred HHHHHHHHHHHhh--cCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhccCCC---CCcCC
Confidence 3588888888887 5688865 3344 6799999999999998743 223 688999999999999986 77776
Q ss_pred ccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc
Q 020852 207 MFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV 270 (320)
Q Consensus 207 ~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn 270 (320)
..+....+. .+...++++.||.|+.+|...+. ...+.+.++++||.+.++
T Consensus 123 ~~~~~~~~~-----~~~~~~~~~~tA~al~~L~~~g~---------~~~~~~~~a~~~L~~~~~ 172 (282)
T cd02891 123 LGPVIHREM-----KGGVDDSVSLTAYVLIALAEAGK---------ACDASIEKALAYLETQLD 172 (282)
T ss_pred CCCccCHhh-----cCCcCCCcchHHHHHHHHHHhcc---------cchHHHHHHHHHHHHhcc
Confidence 555443332 12345788899999999987652 125789999999998765
No 31
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.80 E-value=5.2e-08 Score=91.92 Aligned_cols=118 Identities=16% Similarity=0.143 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhhhhcCCCcee--ccC--CChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhcccCCCCCCCcccc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QSF--GSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKNSQVTDNPQGDFRSM 207 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~~--~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~ 207 (320)
++.++.++..| +.+||.|- ..+ .+.+|-|++++.+|.+++. ..+ ...|+||++||+++|..+ |.|.+.
T Consensus 51 l~~g~~~~~~~--q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~-~~~i~ra~~wL~~~Q~~d---G~f~~~ 124 (292)
T cd02897 51 LRTGYQRQLTY--KHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYID-ENVLQQALTWLSSHQKSN---GCFREV 124 (292)
T ss_pred HHHHHHHHHhc--cCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcCCC---CCCCCC
Confidence 56666666666 56888763 222 4589999999999999862 223 679999999999999976 777643
Q ss_pred cCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc
Q 020852 208 FRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV 270 (320)
Q Consensus 208 ~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn 270 (320)
-+.... ......-+.++.||.++.||...+.. ...+.+++|++||.+.|.
T Consensus 125 ~~~~~~-----~~~~~~~~~~~~TA~vl~aL~~~g~~--------~~~~~i~~a~~yL~~~~~ 174 (292)
T cd02897 125 GRVFHK-----AMQGGVDDEVALTAYVLIALLEAGLP--------SERPVVEKALSCLEAALD 174 (292)
T ss_pred CcccCh-----hhcCCCCCCcchHHHHHHHHHhcCCc--------cccHHHHHHHHHHHHhcc
Confidence 221110 00000114577899999999876531 134566666666666554
No 32
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=98.79 E-value=5.7e-08 Score=91.27 Aligned_cols=131 Identities=18% Similarity=0.026 Sum_probs=89.5
Q ss_pred HhhcccccccCCCcHHHHHHHHHHhhhhhh-cCCCceecc-C-CChhhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHh
Q 020852 118 PLNMLSCWVEDPNSDYFKKHLARITEYFWV-GEDGLRVQS-F-GSQTWDCALAVQALLACNLT-DEIGPILMKAHDFLKN 193 (320)
Q Consensus 118 ~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~-~~dG~~~q~-~-~s~vWdTa~a~~AL~~aG~~-~~~~~~l~kA~~wL~~ 193 (320)
+|+.|...+.+.....++++++.|.+. + .++|.+... . .+.++.|..|+++|...|.. .+ ....+++++||.+
T Consensus 33 ~l~~l~ll~~~~~~~~~~~~i~~l~~~--q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~-~~~~~~~~~~l~~ 109 (286)
T cd02890 33 ILSSLDLLGEDLDDENKDEIIDFIYSC--QVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALS-RIDREKIYKFLSS 109 (286)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHh--hcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccc-hhhHHHHHHHHHH
Confidence 444444444443445688999988866 4 567765442 2 57899999999999999862 11 3346889999999
Q ss_pred cccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 020852 194 SQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ 273 (320)
Q Consensus 194 ~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG 273 (320)
+|..+ |+|. .+. .+-.|+--|-.|+.+|..+.. ...+.+++.++||+++|++||
T Consensus 110 ~q~~d---Ggf~------------~~~--~~~~d~~~ty~al~~l~ll~~---------~~~~~~~~~~~~l~~~Q~~dG 163 (286)
T cd02890 110 LQNPD---GSFR------------GDL--GGEVDTRFVYCALSILSLLNI---------LTDIDKEKLIDYILSCQNYDG 163 (286)
T ss_pred hcCCC---CCcc------------cCC--CCCchHHHHHHHHHHHHHhCC---------chhhhHHHHHHHHHHhCCCCC
Confidence 99976 5543 211 111233346667777766652 124678999999999999999
Q ss_pred Cccc
Q 020852 274 RYRA 277 (320)
Q Consensus 274 GW~a 277 (320)
||+.
T Consensus 164 Gf~~ 167 (286)
T cd02890 164 GFGG 167 (286)
T ss_pred CcCC
Confidence 9986
No 33
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.59 E-value=9.8e-07 Score=83.35 Aligned_cols=114 Identities=17% Similarity=-0.008 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhhhhcCCCceecc-C-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQS-F-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI 211 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~-~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~ 211 (320)
.++.++.|.+- +.+||.+... . .+.+.-|-.|+.+|.-.|..+ ...++++++||.++|..| |+|+
T Consensus 102 ~~~~~~~i~~~--q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~--~i~~~~~~~~l~~~q~~d---GGF~------ 168 (287)
T cd02894 102 KEKIAKFIKGL--QNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLD--LIDVDKAVDYLLSCYNFD---GGFG------ 168 (287)
T ss_pred HHHHHHHHHHH--cCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcc--hhhHHHHHHHHHHcCCCC---CCcC------
Confidence 45555555543 4678877643 4 566666766777776666432 345799999999999876 5553
Q ss_pred CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 212 SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 212 ~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
... .+=+|.=-|.+|+.+|..++.. +...+++.++||++.|+.+|||..
T Consensus 169 ------~~~--~~es~~~~t~cavasL~llg~~---------~~~~~~~~~~~L~~~q~~~GGf~g 217 (287)
T cd02894 169 ------CRP--GAESHAGQIFCCVGALAILGSL---------DLIDRDRLGWWLCERQLPSGGLNG 217 (287)
T ss_pred ------CCC--CCCCchhHHHHHHHHHHHcCcc---------cccCHHHHHHHHHHhCCCCCCcCC
Confidence 221 1113444588899898887642 223478899999999999999954
No 34
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=98.43 E-value=4e-06 Score=80.15 Aligned_cols=137 Identities=16% Similarity=0.024 Sum_probs=82.4
Q ss_pred hHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceecc----C-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 020852 116 EKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQS----F-GSQTWDCALAVQALLACNLTDEIGPILMKAHDF 190 (320)
Q Consensus 116 ~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~----~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~w 190 (320)
+.++..|...+.+.+.-...+.++.|... +.+||.+.+. . .+.+--|-.|+.++.-.|..++.....++.++|
T Consensus 96 y~Al~~L~lL~~~~~~idr~~i~~~l~~~--q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~ 173 (307)
T cd02895 96 YFALLSLLILGDDLSRVDRKAILNFLSKL--QLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDY 173 (307)
T ss_pred HHHHHHHHHhCCchhhhhHHHHHHHHHHh--CCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHH
Confidence 34555555544332211234555555544 4578866543 3 456666766777776666543102347899999
Q ss_pred HHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc
Q 020852 191 LKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV 270 (320)
Q Consensus 191 L~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn 270 (320)
|.++|..| |+|+...-+. ++.--|-+|+-+|..+.... ..+....++.++||+++|+
T Consensus 174 l~s~Q~~d---GGF~~~~~~E--------------sh~g~Tyca~asL~lL~~~~------~~~~~~~~~l~~wL~~rQ~ 230 (307)
T cd02895 174 IKSSQSYD---GGFGQGPGLE--------------SHGGSTFCAIASLSLLGKLE------ELSEKFLERLKRWLVHRQV 230 (307)
T ss_pred HHHccCCC---CCccCCCCCC--------------ccccHHHHHHHHHHHcCCcc------ccccccHHHHHHHHHHhcC
Confidence 99999986 6664221111 22223777887777765321 0123557889999999999
Q ss_pred CCCCccc
Q 020852 271 RKQRYRA 277 (320)
Q Consensus 271 ~dGGW~a 277 (320)
.+|||.-
T Consensus 231 ~~GGF~g 237 (307)
T cd02895 231 SGTGFNG 237 (307)
T ss_pred CCCCcCC
Confidence 9999976
No 35
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.40 E-value=3.4e-06 Score=80.28 Aligned_cols=130 Identities=18% Similarity=0.108 Sum_probs=80.3
Q ss_pred hHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccC--CChhhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHH
Q 020852 116 EKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSF--GSQTWDCALAVQALLACNLTDEI-GPILMKAHDFLK 192 (320)
Q Consensus 116 ~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~--~s~vWdTa~a~~AL~~aG~~~~~-~~~l~kA~~wL~ 192 (320)
+-+++.|...+...+....++.++.|... +.++|.+.... .+.+.-|-.|++.|...|..+.. .-..+++++||.
T Consensus 31 y~~l~~l~lL~~~~~~~~~~~~i~~i~~~--q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~ 108 (299)
T cd02893 31 YWILHSLELLGEELDQSYADDVISFLRRC--QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLL 108 (299)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHHHHh--cCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHH
Confidence 33444445544333333455666666554 35777665433 57899999999999998853211 122356999999
Q ss_pred hcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc----cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 193 NSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC----SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 193 ~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~----Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
+.|..| |+|. .. . ..++|. +|.++..|+.+ .+.+.+++.++||+++
T Consensus 109 ~~q~~d---Ggf~------------~~--~--~~e~D~r~tycava~~~lL~~-----------~~~~~~~~~~~~l~~c 158 (299)
T cd02893 109 SLKQPD---GSFR------------MH--V--GGEVDVRGTYCAISVASLLNI-----------LTDELFEGVAEYILSC 158 (299)
T ss_pred HhcCCC---CCee------------CC--C--CCCchHhHHHHHHHHHHHhCC-----------CchhhHHHHHHHHHHc
Confidence 999876 5443 22 1 123332 34444444322 1346688999999999
Q ss_pred ccCCCCccc
Q 020852 269 QVRKQRYRA 277 (320)
Q Consensus 269 Qn~dGGW~a 277 (320)
||.||||+.
T Consensus 159 Q~~dGGF~~ 167 (299)
T cd02893 159 QTYEGGFGG 167 (299)
T ss_pred CCCCCCcCC
Confidence 999999986
No 36
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=98.38 E-value=3.1e-06 Score=79.97 Aligned_cols=118 Identities=20% Similarity=0.161 Sum_probs=74.3
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccC--CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSF--GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRH 210 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~--~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~ 210 (320)
..+++++.|.+.. ..++|.+...- .+.+.-|-+|+++|.-.+.-+..++..+++++||.+.|..+ |+|.
T Consensus 50 ~~~~~i~fl~~~q-~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~d---Ggf~----- 120 (287)
T cd02894 50 NREEIIEFVKSCQ-DNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNED---GSFS----- 120 (287)
T ss_pred hHHHHHHHHHHHh-cCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCC---CCee-----
Confidence 3567777666542 13466554322 34577788888888865432233456899999999999875 5543
Q ss_pred CCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 211 ISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 211 ~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.+. .+-+|+--|=.|+.+|..+... +...++++++||+++|+.||||+.
T Consensus 121 -------~~~--~~e~d~~~ty~a~~~l~ll~~~---------~~i~~~~~~~~l~~~q~~dGGF~~ 169 (287)
T cd02894 121 -------GDK--WGEVDTRFSYCAVLCLTLLGKL---------DLIDVDKAVDYLLSCYNFDGGFGC 169 (287)
T ss_pred -------cCC--CCCchHHHHHHHHHHHHHhCCc---------chhhHHHHHHHHHHcCCCCCCcCC
Confidence 221 1112332255566565555421 234479999999999999999976
No 37
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.33 E-value=1.8e-06 Score=80.27 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=71.7
Q ss_pred ChhhHHHHHHHHHHHcCCCC-----CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHH
Q 020852 159 SQTWDCALAVQALLACNLTD-----EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSE 233 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~-----~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~ 233 (320)
|..+-..++..-+.+.+... +....|++++++|.+.|..| |+| ++=..+ ..++.-.|+.
T Consensus 21 s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~d---Ggf------------~~w~~~-~~~~~~~Ta~ 84 (282)
T cd02891 21 SRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSD---GSF------------SAWGNS-DSGSTWLTAY 84 (282)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCC---CCc------------cccCCC-CCCchHHHHH
Confidence 34444445555555555432 34678999999999999976 544 322111 1355667999
Q ss_pred HHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccC
Q 020852 234 SFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNL 281 (320)
Q Consensus 234 aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~ 281 (320)
++++|..++.. + .++++.++||++||++.|++||+|..+...
T Consensus 85 ~~~~L~~a~~~-----~-~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~ 126 (282)
T cd02891 85 VVKFLSQARKY-----I-DVDENVLARALGWLVPQQKEDGSFRELGPV 126 (282)
T ss_pred HHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhccCCCCCcCCCCCc
Confidence 99999987641 2 467899999999999999999999886553
No 38
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.30 E-value=1.3e-05 Score=76.99 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhhhhcCCCceecc-C-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQS-F-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI 211 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~-~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~ 211 (320)
..+.++.|.+- +.+||.+-.. . .+.+--|-.|+.++.-.+... ...++++++||.++|..| |+|+..
T Consensus 106 ~~~~~~~l~s~--Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~--~i~~~~~~~~i~scq~~d---GGF~~~---- 174 (316)
T PLN03201 106 ADKVASYVAGL--QNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLD--KINVEKAVDYIVSCKNFD---GGFGCT---- 174 (316)
T ss_pred HHHHHHHHHHh--cCCCCCccCCCCCCccHHHHHHHHHHHHHhCccc--hhHHHHHHHHHHHhcCCC---CCcCCC----
Confidence 33455555543 4578876543 2 333433444444444445322 235799999999999876 555321
Q ss_pred CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 212 SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 212 ~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
...=++.--|..|+-+|..++... .++. .+-+.||+.+|+.+||+.-
T Consensus 175 ----------p~~esh~g~T~caiaaL~llg~~~------~~d~---~~l~~wL~~rQ~~~GGf~g 221 (316)
T PLN03201 175 ----------PGGESHAGQIFCCVGALAITGSLH------HVDK---DLLGWWLCERQVKSGGLNG 221 (316)
T ss_pred ----------CCCCCccceehHHHHHHHHcCccc------cCCH---HHHHHHHHHhCCCCCCcCC
Confidence 111234445888888887765321 1333 3458899999999999975
No 39
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=98.19 E-value=2.5e-05 Score=74.96 Aligned_cols=156 Identities=15% Similarity=0.093 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccc-----cchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccC--CCh
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIG-----CVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSF--GSQ 160 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~-----pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~--~s~ 160 (320)
.+++.+++....+...+.... .+.. .++-+++.|...+.. +....++.++.|..- +.++|.+...- .+.
T Consensus 9 ~~~kh~~yl~~~~~~~~~~~~-~~~~~~r~~~~y~~l~~L~lL~~~-~~~~~~~~i~~l~~c--q~~~GGF~~~~~~~~h 84 (316)
T PLN03201 9 VVDKHVRYIKSLEKKKDSFES-VVMEHLRMNGAYWGLTALDLLGKL-DDVDRDEVVSWVMRC--QHESGGFGGNTGHDPH 84 (316)
T ss_pred cHHHHHHHHHHhCCCCCCccc-cccccchHHHHHHHHHHHHHhCCC-ccccHHHHHHHHHHh--cCCCCCcCCCCCCccc
Confidence 367777776664432211111 1111 123344444444322 222355666655543 34677554322 345
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc--cHHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC--SSESFLCC 238 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~--Ta~aL~AL 238 (320)
+=-|-.|+++|.-.+.-. .-..+++++||.+.|..+ |+|. .. .+-++|. |=.|+.+|
T Consensus 85 ~~~Ty~al~~L~ll~~~~--~id~~~~~~~l~s~Q~~d---GgF~------------~~----~~ge~D~r~ty~a~a~l 143 (316)
T PLN03201 85 ILYTLSAVQILALFDRLD--LLDADKVASYVAGLQNED---GSFS------------GD----EWGEIDTRFSYCALCCL 143 (316)
T ss_pred HHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHhcCCC---CCcc------------CC----CCCCccHHHHHHHHHHH
Confidence 555777777777654221 223567999999999875 5543 11 1123343 44454444
Q ss_pred HHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 239 LHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
..+.. .+...++++++||+++||.||||+.
T Consensus 144 ~LL~~---------~~~i~~~~~~~~i~scq~~dGGF~~ 173 (316)
T PLN03201 144 SLLKR---------LDKINVEKAVDYIVSCKNFDGGFGC 173 (316)
T ss_pred HHhCc---------cchhHHHHHHHHHHHhcCCCCCcCC
Confidence 44432 1234578999999999999999986
No 40
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.17 E-value=1.7e-05 Score=73.31 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=69.0
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHH
Q 020852 158 GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLC 237 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~A 237 (320)
....|..|++..||+-+| . ++..+++.+-|.+....++..--|........ ..+.+.. ..-.++-.||.||+|
T Consensus 129 ~~~~Y~lAl~aYAL~la~-~---~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~-~~~~~~~--~~s~~vEtTaYaLLa 201 (246)
T PF07678_consen 129 IQDPYTLALVAYALALAG-D---SPQASKLLNKLNSMATTEGGLRYWSSDESSSS-SSSPWSR--GSSLDVETTAYALLA 201 (246)
T ss_dssp TSSHHHHHHHHHHHHHTT-T---CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSS-SSSTTT---SHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhc-c---cchHHHHHHHHHHhhhhccccCcccCCccccc-ccccccc--cchHHHHHHHHHHHH
Confidence 456799999999999998 2 46788889999998887631112322111111 1111110 001255679999999
Q ss_pred HHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 238 CLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 238 L~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
++... +.+...+.++||.+.||.+|||++
T Consensus 202 ~l~~~-----------~~~~~~~iv~WL~~qr~~~Ggf~S 230 (246)
T PF07678_consen 202 LLKRG-----------DLEEASPIVRWLISQRNSGGGFGS 230 (246)
T ss_dssp HHHHT-----------CHHHHHHHHHHHHHCTTTTSSTSS
T ss_pred HHhcc-----------cHHHHHHHHHHHHHhcCCCCccCc
Confidence 98863 457888999999999999999976
No 41
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=98.10 E-value=7.5e-05 Score=71.14 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=66.3
Q ss_pred HHHHHhhhhhhcCCCceecc-C-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCC
Q 020852 137 HLARITEYFWVGEDGLRVQS-F-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKG 214 (320)
Q Consensus 137 ~l~~l~~~l~~~~dG~~~q~-~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~G 214 (320)
.++.|..- +.+||.+... . .+.+.-|-.|+..+.-.|..+ ...++++++||+++|..| |+++
T Consensus 103 ~~~~l~~~--q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~--~~~~~~~~~~l~~cQ~~d---GGF~--------- 166 (299)
T cd02893 103 LYKFLLSL--KQPDGSFRMHVGGEVDVRGTYCAISVASLLNILT--DELFEGVAEYILSCQTYE---GGFG--------- 166 (299)
T ss_pred HHHHHHHh--cCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHcCCCC---CCcC---------
Confidence 44444432 3577766532 2 344444333333333335432 346899999999999976 6543
Q ss_pred cccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccC-CCCccc
Q 020852 215 GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR-KQRYRA 277 (320)
Q Consensus 215 GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~-dGGW~a 277 (320)
.....-++.=-|.+|+-+|..+... +.-..++.++||+..|+. +||+.-
T Consensus 167 -----~~p~~e~h~~yTfcavasL~llg~~---------~~~d~~~l~~wl~~~q~~~~GGf~g 216 (299)
T cd02893 167 -----GVPGNEAHGGYTFCALAALAILGKP---------DKLDLESLLRWLVARQMRFEGGFQG 216 (299)
T ss_pred -----CCCCCCCCccHHHHHHHHHHHcCCc---------cccCHHHHHHHHHhhcCCCCCCcCC
Confidence 1111113344488888888776531 122367799999999998 899863
No 42
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=98.01 E-value=1.4e-05 Score=73.94 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=78.5
Q ss_pred HHHHHhhhhhhcCCCcee---ccCCChhhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhcccCCCCCCCcccccCCC-
Q 020852 137 HLARITEYFWVGEDGLRV---QSFGSQTWDCALAVQALLACNLTD-EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI- 211 (320)
Q Consensus 137 ~l~~l~~~l~~~~dG~~~---q~~~s~vWdTa~a~~AL~~aG~~~-~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~- 211 (320)
+.+++..| +.+||++- ....+.+|=|||++..|.++..-. -....|.++++||.++|..| |.|.+..+..
T Consensus 2 GYqr~L~y--~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~~~~~ 76 (246)
T PF07678_consen 2 GYQRQLSY--RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDGPVIH 76 (246)
T ss_dssp HHHHHHTT--B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SSS-SS
T ss_pred chHHHhcC--CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCCCccc
Confidence 45666667 56788543 223788999999999999884322 12678999999999999987 8776543311
Q ss_pred --CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 212 --SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 212 --~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
..||. ..++.-||.++.||+..+..... ..+.....+++|++||...
T Consensus 77 ~~~~g~~--------~~~~~lTA~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 77 REMQGGV--------EDDIALTAYVLIALLEAGSLCDS--EKPEYENAINKALNYLERH 125 (246)
T ss_dssp GGGSGGG--------THHHHHHHHHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHH
T ss_pred cccCCCC--------CCCeeehHHHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHh
Confidence 12332 13566799999999987632110 1223568899999999765
No 43
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=97.92 E-value=8.8e-05 Score=70.96 Aligned_cols=139 Identities=15% Similarity=-0.003 Sum_probs=81.7
Q ss_pred HhhcccccccCC--CcHHHHHHHHHHhhhhh--hcCCCceeccC------------CChhhHHHHHHHHHHHcCCCCCcc
Q 020852 118 PLNMLSCWVEDP--NSDYFKKHLARITEYFW--VGEDGLRVQSF------------GSQTWDCALAVQALLACNLTDEIG 181 (320)
Q Consensus 118 ~l~~L~~~~~~p--d~~~v~~~l~~l~~~l~--~~~dG~~~q~~------------~s~vWdTa~a~~AL~~aG~~~~~~ 181 (320)
+|+.|...+.+. +...-++.++.|..... ..++|.+.... .+.++.|=+|+.+|.-.|...+ .
T Consensus 33 ~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~-~ 111 (307)
T cd02895 33 ALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLS-R 111 (307)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchh-h
Confidence 444455544332 22223455555555410 04677655432 3789999999999988874322 2
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHH
Q 020852 182 PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDA 261 (320)
Q Consensus 182 ~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~ra 261 (320)
-..++.++||.+.|..+ |+|+.. .. ...+-+|+--|=.|+.+|..+.... + .....++.
T Consensus 112 idr~~i~~~l~~~q~~d---GgF~~~--------~~---~~~~e~d~r~ty~Av~~l~lL~~~~------~-~~~d~~~l 170 (307)
T cd02895 112 VDRKAILNFLSKLQLPD---GSFGSV--------LD---SEGGENDMRFCYCAVAICYMLDDWS------E-EDIDKEKL 170 (307)
T ss_pred hhHHHHHHHHHHhCCCC---CCccCC--------cC---CcCCCccHHHHHHHHHHHHHhCCCc------c-ccccHHHH
Confidence 23578999999999876 655411 10 0112233334555666665554211 0 12346789
Q ss_pred HHHHHhcccCCCCcccc
Q 020852 262 ANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 262 v~wLl~~Qn~dGGW~af 278 (320)
++||+++|+.||||+.-
T Consensus 171 i~~l~s~Q~~dGGF~~~ 187 (307)
T cd02895 171 IDYIKSSQSYDGGFGQG 187 (307)
T ss_pred HHHHHHccCCCCCccCC
Confidence 99999999999999863
No 44
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.92 E-value=0.00012 Score=73.12 Aligned_cols=160 Identities=10% Similarity=0.063 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc----cccchHHhhcccccccCC--CcHHHHHHHHHHhhhhhhcCCCceeccC--CC
Q 020852 88 LRDKSLKVAMKHINYEDEASRYIT----IGCVEKPLNMLSCWVEDP--NSDYFKKHLARITEYFWVGEDGLRVQSF--GS 159 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~----~~pv~~~l~~L~~~~~~p--d~~~v~~~l~~l~~~l~~~~dG~~~q~~--~s 159 (320)
.|++.++++...+..+++..+..+ +.+.+.++..|...+.+. +.-...+.++.|... +.+||.+.... .+
T Consensus 93 ~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~--q~~dGgF~~~~~gE~ 170 (439)
T PLN02710 93 LENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRM--KDPSGGFRMHDGGEM 170 (439)
T ss_pred HHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHc--CCCCCCcccCCCCCC
Confidence 466666666655443332222110 111445565666555321 110123333333332 35677655332 33
Q ss_pred hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852 160 QTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~ 239 (320)
.+.-|=.|+..+.-.|.-. ...+++.++||+++|..| |+++ |.+... ++.--|=+|+-+|.
T Consensus 171 D~R~tYcAlail~LL~~l~--~~~~e~~~~~I~scQ~~d---GGF~---------g~P~~E-----aH~gyTfcavAsL~ 231 (439)
T PLN02710 171 DVRACYTAISVASLLNILD--DELVKGVGDYILSCQTYE---GGIG---------GEPGAE-----AHGGYTFCGLAAMI 231 (439)
T ss_pred CcCCcHHHHHHHHHhCcCc--hhhHHHHHHHHHHhCCCC---CCCC---------CCCCCC-----CchHHHHHHHHHHH
Confidence 4444444444444445432 345789999999999986 6654 111111 11122556666776
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.++.. +.-.+.+.++||+..|+.+|||.-
T Consensus 232 LLg~l---------~~id~~~l~~WL~~rQ~~~GGF~G 260 (439)
T PLN02710 232 LINEV---------DRLDLPSLINWVVFRQGVEGGFQG 260 (439)
T ss_pred HcCCc---------cccCHHHHHHHHHHhcCcCCCcCC
Confidence 66531 112366789999999999999975
No 45
>PLN02710 farnesyltranstransferase subunit beta
Probab=97.91 E-value=0.00077 Score=67.37 Aligned_cols=160 Identities=14% Similarity=0.076 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc-----cccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccC--CCh
Q 020852 88 LRDKSLKVAMKHINYEDEASRYIT-----IGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSF--GSQ 160 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~-----~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~--~s~ 160 (320)
.|++=+++....+.. -.+.|.+ +..++-+|+.|...+.+.+....++.++.|... +.++|.+.++- .+.
T Consensus 45 ~~~~H~~yl~~~l~~--lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~c--Q~~dGGFgg~pg~~~h 120 (439)
T PLN02710 45 WREKHLEYLTRGLRQ--LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRC--QDPNGGYGGGPGQLPH 120 (439)
T ss_pred cHHHHHHHHHHHhhc--CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHh--cCCCcCCCCCCCCCcc
Confidence 477777776665542 1111111 111233555555555433322334555555543 35677665443 467
Q ss_pred hhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEI-GPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~-~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~ 239 (320)
+--|=.|+.+|.-.|-.+.+ .--.++..+||.+.|..+ |++... +| +=+|+.-|=.|+..+.
T Consensus 121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~d---GgF~~~-----~~---------gE~D~R~tYcAlail~ 183 (439)
T PLN02710 121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPS---GGFRMH-----DG---------GEMDVRACYTAISVAS 183 (439)
T ss_pred HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCC---CCcccC-----CC---------CCCCcCCcHHHHHHHH
Confidence 78888899999888743211 112477899999999876 665421 11 1134443444443443
Q ss_pred HhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 240 HLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.+.. .+.+-+++.++||+++|+.||||+.
T Consensus 184 LL~~---------l~~~~~e~~~~~I~scQ~~dGGF~g 212 (439)
T PLN02710 184 LLNI---------LDDELVKGVGDYILSCQTYEGGIGG 212 (439)
T ss_pred HhCc---------CchhhHHHHHHHHHHhCCCCCCCCC
Confidence 3432 2345678899999999999999986
No 46
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.83 E-value=7.2e-05 Score=70.69 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=59.7
Q ss_pred HHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc-cHHHHHHHHHhcCCCcc--c
Q 020852 172 LACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC-SSESFLCCLHLSTMTPE--I 248 (320)
Q Consensus 172 ~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~-Ta~aL~AL~~~~~~~~~--~ 248 (320)
.+.+ ...+++++.||++||++.|.++ |+|...++.. |++ .. + -+=.|+ +..+|.+|..+...... .
T Consensus 58 ~~t~-d~~y~~A~~rgld~LL~aQypn---GGWPQf~p~~--~~Y--~~--~-ITfND~am~~vl~lL~~i~~~~~~~~~ 126 (290)
T TIGR02474 58 QQEK-NAKYRDAARKGIEYLLKAQYPN---GGWPQFYPLK--GGY--SD--A-ITYNDNAMVNVLTLLDDIANGKDPFDV 126 (290)
T ss_pred HhcC-chhHHHHHHHHHHHHHhhhCCC---CCcCcccCCc--CCc--cc--c-cccCcHHHHHHHHHHHHHHhccCCccc
Confidence 3344 3457899999999999999986 8898777643 222 11 1 122333 66778888665321110 0
Q ss_pred cCC---CCCHHHHHHHHHHHHhcccCCCCc
Q 020852 249 VGE---KMEPERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 249 ~g~---~~~~~~i~rav~wLl~~Qn~dGGW 275 (320)
+.. ....++++||++|||..|-++|||
T Consensus 127 ~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 127 FPDSTRTRAKTAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 000 123578999999999999888755
No 47
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.15 E-value=0.00028 Score=66.79 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=36.7
Q ss_pred CCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC
Q 020852 227 VSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI 282 (320)
Q Consensus 227 d~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~ 282 (320)
|-+.|...|.-|+.+... .+.+...+++.||++|||+.|-+||||+.|=+..
T Consensus 37 DN~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~ 88 (289)
T PF09492_consen 37 DNDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLR 88 (289)
T ss_dssp GGGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--
T ss_pred cChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCC
Confidence 556799999999887532 1334567899999999999999999999975543
No 48
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0025 Score=60.13 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=73.5
Q ss_pred HhhcccccccC---CCcHHHHHHHHHHhhhhhhcCCCceec-cCCC-----hhhHHHHHHHHHHH--cCCCCCccHHHHH
Q 020852 118 PLNMLSCWVED---PNSDYFKKHLARITEYFWVGEDGLRVQ-SFGS-----QTWDCALAVQALLA--CNLTDEIGPILMK 186 (320)
Q Consensus 118 ~l~~L~~~~~~---pd~~~v~~~l~~l~~~l~~~~dG~~~q-~~~s-----~vWdTa~a~~AL~~--aG~~~~~~~~l~k 186 (320)
.|.+|...|++ -|...+.+.++. .+++||+++. .+|| +||-.+ ++.-|.. .|++ -+|
T Consensus 111 sl~~L~~lGddLsrlDrksil~~v~~-----~Q~~dGsF~~~~~GSe~DmRFvYcA~-aI~ymLd~~s~iD------~ek 178 (347)
T KOG0367|consen 111 SLACLVILGDDLSRLDRKSILRFVSA-----CQRPDGSFVSINVGSESDMRFVYCAV-AICYMLDFWSGID------KEK 178 (347)
T ss_pred HHHHHHHHcchHhhhhHHHHHHHHHH-----hcCCCCceeecCCCCchhhHHHHHHH-HHHHHhccccccC------HHH
Confidence 45556666654 233334444432 2478998763 3354 455433 3333333 3332 378
Q ss_pred HHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHH-HHHHHHHHH
Q 020852 187 AHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPE-RFYDAANFM 265 (320)
Q Consensus 187 A~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~-~i~rav~wL 265 (320)
+..|++++|.=| |+++-..-+.+-|| -|-.||-+|...... +.+.+..+ .++|-++|+
T Consensus 179 ~~~yI~~~q~Yd---gGfg~~pg~EsHgG--------------~TfCAlAsL~L~~~l----~~e~l~~~~~~erlirWl 237 (347)
T KOG0367|consen 179 LIGYIRSSQRYD---GGFGQHPGGESHGG--------------ATFCALASLALMGKL----IPEELSNTSKVERLIRWL 237 (347)
T ss_pred HHHHHHHhhccc---cccccCCCCCCCcc--------------hhHHHHHHHHHHhhh----hhhhhccccCHHHHHHHH
Confidence 999999999987 66553322222233 366666666555432 11222333 389999999
Q ss_pred HhcccCCCCccc
Q 020852 266 LSIQVRKQRYRA 277 (320)
Q Consensus 266 l~~Qn~dGGW~a 277 (320)
+..|-.+||+--
T Consensus 238 i~RQ~~sgGfqG 249 (347)
T KOG0367|consen 238 IQRQVSSGGFQG 249 (347)
T ss_pred HHHhhccCCcCC
Confidence 999999999954
No 49
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.05 E-value=0.0046 Score=56.03 Aligned_cols=142 Identities=18% Similarity=0.183 Sum_probs=83.4
Q ss_pred HHHHHhhcCCCCcccccc------chHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHH
Q 020852 97 MKHINYEDEASRYITIGC------VEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQA 170 (320)
Q Consensus 97 ~~~i~~~~~~t~~~~~~p------v~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~A 170 (320)
.+.....+....|....| +.++|+|..+ ++..+ ++ +.+.+|. .++|. -.++|+..=.|-++.+|
T Consensus 105 ~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~---~~~eE-~k---~~v~~~~--re~~~-g~~YGv~~pnt~~t~~a 174 (274)
T COG1689 105 EKFAVGLGGSEEFGTATPLEATYWMMSALNMVNY---EYLEE-MK---EKVIEFV--REFGI-GDAYGVTHPNTTMTYQA 174 (274)
T ss_pred HHHhhhcCceeecCCCchHHHHHHHHHHHHHhCc---CchHH-HH---HHHHHHh--hhhcc-ccccccCCcchHHHHHH
Confidence 444455555555545545 3456666444 44332 22 2334453 22221 12346666668899998
Q ss_pred HHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccC
Q 020852 171 LLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVG 250 (320)
Q Consensus 171 L~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g 250 (320)
|---|.-. .......|=.. -||| |||.+.. +..-|=+.+|-.|+..|-.++.
T Consensus 175 ly~l~~k~----~~~~v~~Fe~~-------c~~~---------Ggf~~~P-~syPPYiE~t~ya~r~lelL~~------- 226 (274)
T COG1689 175 LYTLGSKG----PKEEVRHFELC-------CGDW---------GGFTEVP-NSYPPYIEPTFYALRGLELLGG------- 226 (274)
T ss_pred HHhhcccc----chHHHHhHHhc-------cccC---------CCcccCC-CCCCCccchHHHHHhHHHHHcc-------
Confidence 87665422 12333333322 2666 8888754 4444677899999999987763
Q ss_pred CCCCHHHHHHHHHHHHhcccCCCCc-ccccc
Q 020852 251 EKMEPERFYDAANFMLSIQVRKQRY-RAIDN 280 (320)
Q Consensus 251 ~~~~~~~i~rav~wLl~~Qn~dGGW-~afe~ 280 (320)
.-.+.+-+++|.+.||+|||| -+++-
T Consensus 227 ----k~~i~~~~rFI~slqN~nGGFRRS~~~ 253 (274)
T COG1689 227 ----KYCISDHIRFIRSLQNQNGGFRRSYEL 253 (274)
T ss_pred ----CcCchHHHHHHHHhhcCCCCeeeeEec
Confidence 244777899999999999999 33443
No 50
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0045 Score=58.84 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=66.5
Q ss_pred cCCCceeccC--CChhhHHHHHHHHHHHcCCCCCccHHHH--HHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCC
Q 020852 148 GEDGLRVQSF--GSQTWDCALAVQALLACNLTDEIGPILM--KAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDH 223 (320)
Q Consensus 148 ~~dG~~~q~~--~s~vWdTa~a~~AL~~aG~~~~~~~~l~--kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~ 223 (320)
.+.|....+- .+++=.|-+|++.|+-.+--+ .-..++ +-.+|+...|.++ |.+. +.
T Consensus 89 ~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~-~~~~idr~~l~~fi~~lk~pd---GsF~----------------~~ 148 (342)
T COG5029 89 GPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLD-VLSRIDRDSLASFISGLKNPD---GSFR----------------SD 148 (342)
T ss_pred cCCCCcCCCCccchhHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHhccCCC---Ccee----------------cc
Confidence 4555444332 578889999999999886332 123344 5789999999987 6542 22
Q ss_pred CCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 020852 224 GWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 224 ~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~af 278 (320)
.+..+| |=.+-.||..+. ..| ..+.+-.+-+||||.++||=||||+.-
T Consensus 149 ~~gevD-tr~~Y~al~ils-----llg-~~~~~~~e~~vdyl~kCqnyeGGFg~~ 196 (342)
T COG5029 149 LEGEVD-TRFLYIALSILS-----LLG-DLDKELFEGAVDYLKKCQNYEGGFGLC 196 (342)
T ss_pred cCCcch-HHHHHHHHHHHH-----HHh-hcchhhhHHHHHHHHHhhccCCcccCC
Confidence 222333 222333443322 112 246677888999999999999999883
No 51
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.022 Score=53.02 Aligned_cols=106 Identities=21% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHhhhhhh--cCCCceeccC--CChhhHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCC
Q 020852 140 RITEYFWV--GEDGLRVQSF--GSQTWDCALAVQALLACN-LTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKG 214 (320)
Q Consensus 140 ~l~~~l~~--~~dG~~~q~~--~s~vWdTa~a~~AL~~aG-~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~G 214 (320)
+|..|+.. .++|.+.... .+.+=-|--|+|-|+--. +..- -..|-..|+..-|+.| |.+
T Consensus 70 eiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~---d~d~v~~yi~gLq~ed---GsF---------- 133 (329)
T KOG0366|consen 70 EIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVL---DRDKVASYIKGLQQED---GSF---------- 133 (329)
T ss_pred HHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccc---cHHHHHHHHHhhcCcC---Ccc----------
Confidence 44445433 3556554322 467777888888888665 3221 1456788999999987 643
Q ss_pred cccccCCCCCCCCCc----ccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 020852 215 GWTFSNKDHGWPVSD----CSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 215 GW~Fs~~~~~~Pd~D----~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~af 278 (320)
.++.|-.+| ++|.+ +|..++. ++...+++||+|++++-|-||||+.-
T Consensus 134 ------~gD~wGEvDTRfs~~av~--~L~lLg~---------ld~~nve~aVd~~~~CyN~DGGFG~~ 184 (329)
T KOG0366|consen 134 ------SGDIWGEVDTRFSYCAVA--CLALLGK---------LDTINVEKAVDFVLSCYNFDGGFGCR 184 (329)
T ss_pred ------cCCcccccchhhhHHHHH--HHHHHhh---------HHHhhHHHHHHHHHhhcccCCCcCCC
Confidence 233333444 34444 4444443 24677899999999999999999884
No 52
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.083 Score=51.06 Aligned_cols=158 Identities=23% Similarity=0.194 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccccc-----chHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCC--Ch
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIGC-----VEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFG--SQ 160 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~p-----v~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~--s~ 160 (320)
+|++=+.+..+-++. -.+.|.++-+ ++=.++.|...++.-++....++++.|..- +.++|.+.++-| ..
T Consensus 73 ~r~kH~~YL~~~Lr~--Lp~~~~~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c--~~PeGGfgGGPGQl~H 148 (423)
T KOG0365|consen 73 FRQKHLMYLDKMLRQ--LPSQYTCLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTC--QGPEGGFGGGPGQLPH 148 (423)
T ss_pred HHHHHHHHHHHHHHh--CCCcccccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhc--CCCCCCCCCCCccchh
Confidence 377766666554433 2222223222 233566666666677777888888877643 567887776653 45
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHH--HHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc-cHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEIGPIL--MKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC-SSESFLC 237 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~~~~l--~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~-Ta~aL~A 237 (320)
+=-|=.|+.||+-.|-.+. -..| ++-.+||.+.-.++ |++. ..+.| .+|. .+..-.+
T Consensus 149 LA~TYAAVnaL~~~~~e~A-~~~InR~~l~~fL~slK~~d---GgFr--------------mh~~G--E~DvRs~YcA~s 208 (423)
T KOG0365|consen 149 LAPTYAAVNALCLCGSEDA-YSSINREKLYQFLFSLKDPD---GGFR--------------MHVEG--EVDVRSAYCALS 208 (423)
T ss_pred hhHHHHHHHHHHhcCcHHH-HHHhhHHHHHHHHHHhcCCC---CCeE--------------eecCC--cchHHHHHHHHH
Confidence 5567779999999986553 2334 45789999987765 6543 22222 3443 2223233
Q ss_pred HHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 238 CLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 238 L~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
+..+-+. + .+|-.+--.+||.++||=.||++.
T Consensus 209 vasllni-------~-~deL~eG~~~wi~~CQtyEGG~GG 240 (423)
T KOG0365|consen 209 VASLLNI-------P-MDELFEGTLDWIASCQTYEGGFGG 240 (423)
T ss_pred HHHHHCC-------C-cHHHHHHHHHHHHhcccccCCcCC
Confidence 3333322 1 235555568999999999999976
No 53
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.056 Score=52.20 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHIS 212 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~ 212 (320)
.++|+..|...+..-+.-. ..- -|.-|=.=..+.+|+--|..-+ +...+++++||..+|-++ |+++
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~--~~LDASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe---GGfg------- 140 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQY--TCLDASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE---GGFG------- 140 (423)
T ss_pred HHHHHHHHHHHHHhCCCcc--cccccCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---CCCC-------
Confidence 4578887777765444321 111 4677888888888887776545 678999999999999886 5442
Q ss_pred CCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHH--HHHHHHHhcccCCCCccc
Q 020852 213 KGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFY--DAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 213 ~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~--rav~wLl~~Qn~dGGW~a 277 (320)
| .+.-+|..--|=.|+.||..++... --..|. +-.+||.++-++||||--
T Consensus 141 -G------GPGQl~HLA~TYAAVnaL~~~~~e~--------A~~~InR~~l~~fL~slK~~dGgFrm 192 (423)
T KOG0365|consen 141 -G------GPGQLPHLAPTYAAVNALCLCGSED--------AYSSINREKLYQFLFSLKDPDGGFRM 192 (423)
T ss_pred -C------CCccchhhhHHHHHHHHHHhcCcHH--------HHHHhhHHHHHHHHHHhcCCCCCeEe
Confidence 2 3444677777888999998765310 012222 347999999999999955
No 54
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.20 E-value=0.004 Score=42.11 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcccCCCCcccc
Q 020852 258 FYDAANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 258 i~rav~wLl~~Qn~dGGW~af 278 (320)
++++++||++.|++||||+..
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~ 23 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGR 23 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSS
T ss_pred HHHHHHHHHHHCCCCCCCCCC
Confidence 678999999999999999874
No 55
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=96.15 E-value=0.0056 Score=58.06 Aligned_cols=107 Identities=13% Similarity=0.235 Sum_probs=56.3
Q ss_pred HHHHHHHHHH----cCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc-cHHHHHHH
Q 020852 164 CALAVQALLA----CNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC-SSESFLCC 238 (320)
Q Consensus 164 Ta~a~~AL~~----aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~-Ta~aL~AL 238 (320)
|.-.+..|+. .+ .+.+++++.|+++||++.|.+. |+|.-.||. .|| |+..- .=.|+ ...+|.-|
T Consensus 41 T~~ei~fLa~~y~~t~-d~~y~~A~~kgl~ylL~aQypn---GGWPQ~yP~--~~~--Y~~~I---TfNDdam~~vl~lL 109 (289)
T PF09492_consen 41 TTTEIRFLARVYQATK-DPRYREAFLKGLDYLLKAQYPN---GGWPQFYPL--RGG--YHDHI---TFNDDAMVNVLELL 109 (289)
T ss_dssp THHHHHHHHHHHHHCG--HHHHHHHHHHHHHHHHHS-TT---S--BSECS----SG--GGGSE---E-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHhhCCC---CCCCccCCC--CCC--CCCce---EEccHHHHHHHHHH
Confidence 4444454543 33 3357899999999999999985 899887775 233 22211 11233 55566666
Q ss_pred HHhcCCCccc--cCC---CCCHHHHHHHHHHHHhccc----CCCCccc-cccC
Q 020852 239 LHLSTMTPEI--VGE---KMEPERFYDAANFMLSIQV----RKQRYRA-IDNL 281 (320)
Q Consensus 239 ~~~~~~~~~~--~g~---~~~~~~i~rav~wLl~~Qn----~dGGW~a-fe~~ 281 (320)
..+.+..... +.. ..-.+++.||+++||.+|- +--+|++ |+..
T Consensus 110 ~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~ 162 (289)
T PF09492_consen 110 RDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEV 162 (289)
T ss_dssp HHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TT
T ss_pred HHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcc
Confidence 6655422110 000 0224789999999999998 3367876 5554
No 56
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.1 Score=49.90 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHH
Q 020852 181 GPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYD 260 (320)
Q Consensus 181 ~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~r 260 (320)
.+....+++||.++|.-| |+++-..-..+-||.. --||-||..+.... .+++ +++
T Consensus 173 ~~~~e~~vdyl~kCqnye---GGFg~~p~aEaHag~t--------------FcalaalalL~~Ld------~ls~--~E~ 227 (342)
T COG5029 173 KELFEGAVDYLKKCQNYE---GGFGLCPYAEAHAGYT--------------FCALAALALLGKLD------KLSD--VEK 227 (342)
T ss_pred hhhhHHHHHHHHHhhccC---CcccCCCchhhccchH--------------HHHHHHHHHHhccc------ccch--HHH
Confidence 456788999999999987 7775332112224443 33444544444321 2232 778
Q ss_pred HHHHHHhcccCCCCccc
Q 020852 261 AANFMLSIQVRKQRYRA 277 (320)
Q Consensus 261 av~wLl~~Qn~dGGW~a 277 (320)
-+.||...|-+.||+.-
T Consensus 228 l~~Wl~~RQ~ssgGl~G 244 (342)
T COG5029 228 LIRWLAERQLSSGGLNG 244 (342)
T ss_pred HHHHHHHcccccCCcCC
Confidence 89999999999999865
No 57
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.57 E-value=0.039 Score=59.16 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=62.6
Q ss_pred HHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISK 213 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~ 213 (320)
+..-+++|+..+-.-.||. ....+||||. .||...--... .|..-.+++||++.|..| |.|+..
T Consensus 74 ~~~~~~~ir~~l~~~~~g~----~S~S~YDTAW--VAmVp~~~g~~-~p~FP~~~~wIl~nQ~~D---GsWG~~------ 137 (800)
T PLN02592 74 IKERVKTVKSMLSSMEDGE----ISISAYDTAW--VALVEDINGSG-TPQFPSSLQWIANNQLSD---GSWGDA------ 137 (800)
T ss_pred HHHHHHHHHHHHhcccCCC----cCCcHHHhHH--HhhcccCCCCC-CCCCHHHHHHHHHccCCC---CCCCCC------
Confidence 3444556665543334441 2457899999 45544311122 467778999999999987 666521
Q ss_pred CcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh
Q 020852 214 GGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS 267 (320)
Q Consensus 214 GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~ 267 (320)
++ |+.. -.+-.|..++.||..-. +..+++++|+.+|.+
T Consensus 138 ~~--~~~~----D~ll~TLAcvlAL~~w~----------~~~~~i~rGl~fi~~ 175 (800)
T PLN02592 138 YL--FSAH----DRLINTLACVVALKSWN----------LHPEKCEKGMSFFRE 175 (800)
T ss_pred CC--cchH----HHHHhHHHHHHHHHHhh----------ccHHHHHHHHHHHHH
Confidence 10 1111 12346998999986632 246889999999885
No 58
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=94.56 E-value=0.056 Score=36.40 Aligned_cols=41 Identities=22% Similarity=0.146 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHh
Q 020852 184 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHL 241 (320)
Q Consensus 184 l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~ 241 (320)
++++++||+++|..+ |+|+ - .....||.--|-+++.+|..+
T Consensus 3 ~~~~~~~l~~~Q~~d---GGf~------------~--~~~~~~d~~~t~~~~~~L~ll 43 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPD---GGFG------------G--RPGGESDTCYTYCALAALSLL 43 (44)
T ss_dssp HHHHHHHHHHTBBTT---SSBB------------S--STTSSBBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCC---CCCC------------C--CCCCCCChHHHHHHHHHHHHc
Confidence 689999999999975 5554 1 112246777788888888654
No 59
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.7 Score=43.33 Aligned_cols=113 Identities=20% Similarity=0.237 Sum_probs=70.3
Q ss_pred hcCCCceecc-CCChhhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhcccCCCCCCCcccc---------------
Q 020852 147 VGEDGLRVQS-FGSQTWDCALAVQALLAC---NLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSM--------------- 207 (320)
Q Consensus 147 ~~~dG~~~q~-~~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~--------------- 207 (320)
++|||++.+. || -=||-|...|++.. |.-+ .-.+++|++|+.++-+.| |+++-.
T Consensus 127 q~edGsF~gD~wG--EvDTRfs~~av~~L~lLg~ld--~~nve~aVd~~~~CyN~D---GGFG~~pGaESHagqifcCvg 199 (329)
T KOG0366|consen 127 QQEDGSFSGDIWG--EVDTRFSYCAVACLALLGKLD--TINVEKAVDFVLSCYNFD---GGFGCRPGAESHAGQIFCCVG 199 (329)
T ss_pred cCcCCcccCCccc--ccchhhhHHHHHHHHHHhhHH--HhhHHHHHHHHHhhcccC---CCcCCCCCcccccceehhhHH
Confidence 3789976543 22 12565554444432 3322 345899999999999987 666522
Q ss_pred ---------------------cCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHH
Q 020852 208 ---------------------FRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFML 266 (320)
Q Consensus 208 ---------------------~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl 266 (320)
.|+...||- +.+..--|||==+-|+|-.|..+++.. =++.+.+ +++|+
T Consensus 200 aLai~~~L~~vd~d~lgwwlceRQ~~sGGL--NGRpeKlpDVCYSwWvlsSL~iigrl~------wId~ekL---~~FIl 268 (329)
T KOG0366|consen 200 ALAITGKLHLVDRDLLGWWLCERQLPSGGL--NGRPEKLPDVCYSWWVLSSLAIIGRLH------WIDREKL---TKFIL 268 (329)
T ss_pred HHHHccchhhcCHHHHHHHHHhccCCCCCC--CCCcccCcchhhHHHHHhHHHHhhhhh------hccHHHH---HHHHH
Confidence 122223433 334445578877888988887766422 1344544 67999
Q ss_pred hccc-CCCCccc
Q 020852 267 SIQV-RKQRYRA 277 (320)
Q Consensus 267 ~~Qn-~dGGW~a 277 (320)
++|. ++||++-
T Consensus 269 ~cQd~~~GGfsD 280 (329)
T KOG0366|consen 269 ACQDEETGGFSD 280 (329)
T ss_pred hcCCCCCCCcCC
Confidence 9999 7799976
No 60
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=92.30 E-value=0.64 Score=44.96 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhhhhc--CCCceeccCCChhhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHhcccCC
Q 020852 132 DYFKKHLARITEYFWVG--EDGLRVQSFGSQTWDCALAVQALLACNLTDEI-GPILMKAHDFLKNSQVTD 198 (320)
Q Consensus 132 ~~v~~~l~~l~~~l~~~--~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~-~~~l~kA~~wL~~~Q~~~ 198 (320)
..++++++.+.+.+..+ +||.. | .+|.|++|+|||.+++....- .-...|+.+.|+.. +.+
T Consensus 211 ~~i~~~i~~~~~kIl~~q~~~G~~----G-NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~-i~~ 274 (326)
T PF01122_consen 211 RRIQQAIRSLVEKILSQQKPNGLF----G-NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKE-ISQ 274 (326)
T ss_dssp HHHHHHHHHHHHHHHHTB-TTS-B----S-STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcc----c-chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-hhc
Confidence 57888888887776553 46633 2 779999999999999986541 35689999999984 444
No 61
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=92.22 E-value=0.25 Score=51.70 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=62.7
Q ss_pred hhh--HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccc-cCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 160 QTW--DCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSM-FRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 160 ~vW--dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~-~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
.+| |++++++||..+|.+ +..++..+||.+.|..+ |.|-.. +.+..+..|.. -...|.|+..|.
T Consensus 294 y~W~RD~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~l~ 360 (616)
T TIGR01577 294 YCWGRDASYIATALDRAGYH----DRVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW------GLQIDETGSILW 360 (616)
T ss_pred eeccccHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC------CccccchhHHHH
Confidence 456 899999999999975 45899999999999986 766332 33333332211 145677999888
Q ss_pred HHHHhcCCCccccCCCC---CHHHHHHHHHHHHhcccC
Q 020852 237 CCLHLSTMTPEIVGEKM---EPERFYDAANFMLSIQVR 271 (320)
Q Consensus 237 AL~~~~~~~~~~~g~~~---~~~~i~rav~wLl~~Qn~ 271 (320)
|+........ .... .-+.++++++|+.....+
T Consensus 361 al~~y~~~t~---d~~~~~~~~~~v~~a~~fl~~~~~~ 395 (616)
T TIGR01577 361 AMDQHYRLTN---DRAFLEEIWESVQKAAQYLILFIDP 395 (616)
T ss_pred HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8743211000 0000 125689999999997644
No 62
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=1.1 Score=51.14 Aligned_cols=101 Identities=11% Similarity=0.138 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCC-CCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 158 GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTD-NPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~-~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
.+.++..+....||.-++.+.. ...+.+ |+..-... +...-|.....+..+.+|.++... -|++.||.||+
T Consensus 1095 ~~~~~~~a~~ayAl~l~~sp~a-~~~~~~----l~~~a~~~~d~~~~~~~~~~~~~~~~~~~q~~s---~~VE~tsYaLL 1166 (1436)
T KOG1366|consen 1095 SMDVYTVAITAYALQLAKSPQA-AKALAK----LKSLARVEGDRRYWWASALKAKNAVKYSPQARS---IDVETTAYALL 1166 (1436)
T ss_pred ccccchHHHHHHHHHhccCchH-HHHHHh----hhhhhcccCCceeeeeccccccCcccCCCccch---hhccchHHHHH
Confidence 4678889999999999987654 333433 33322221 001124444444444443333322 27889999999
Q ss_pred HHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 237 AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
+++.+... + ..--.++||.+.||..|||++
T Consensus 1167 ~~~~~~~~---------~--~~~pivrWl~~qr~~~GGf~S 1196 (1436)
T KOG1366|consen 1167 AYLLLAQV---------D--YALPIVRWLVEQRNALGGFSS 1196 (1436)
T ss_pred HHHHhccc---------C--cCchhHhhhhhhhcccCceee
Confidence 99887631 1 344568999999999999976
No 63
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=91.81 E-value=0.64 Score=44.96 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=66.8
Q ss_pred cccCCCcHHHHHHHHHHhhhhhhcCC--CceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCC
Q 020852 125 WVEDPNSDYFKKHLARITEYFWVGED--GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQG 202 (320)
Q Consensus 125 ~~~~pd~~~v~~~l~~l~~~l~~~~d--G~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~G 202 (320)
..++|+...-.+-+..|+.++-.... |.+-+.--+.-|.=++++.||+-.+-.. ....+.+++...+.. - .
T Consensus 107 sC~dp~~~~~~~Lvs~Lk~~le~e~~~i~~h~g~P~TnyYq~sL~vLALCv~~~~~----~~~~v~kL~~~~~~~-~-~- 179 (326)
T PF01122_consen 107 SCRDPRFFKGHNLVSQLKRKLEEEKENIGNHKGHPLTNYYQYSLGVLALCVHNKRV----SLSVVAKLLKAENHN-F-Y- 179 (326)
T ss_dssp TT---TCHHHHHHHHHHHHHHHHHHHHHTSSSTS-SSGHHHHHHHHHHHHHTTHHH----HHHHHHHHHHHHHSS-T-S-
T ss_pred hccCCcccccccHHHHHHHHHHhhhhhcccCCCCCCCcccchHHHHHHHHccCCCc----CHHHHHHHHHHHHhh-c-c-
Confidence 34578854333334444444322111 1111111456799999999999887432 234455555554432 0 0
Q ss_pred CcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCC----HHHHHHHHHHHHhcccCCCCccc
Q 020852 203 DFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKME----PERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 203 dw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~----~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.|++ | .||.+|+|.+||..+.+... .| +.. ..++++.++.|++.|.+||-+|-
T Consensus 180 ----------~~~~-~--------sVDT~AmA~LALtCv~~~~~--~~-~~~~~~i~~~i~~~~~kIl~~q~~~G~~GN 236 (326)
T PF01122_consen 180 ----------HGSQ-F--------SVDTGAMAVLALTCVKNSNP--NG-PELRRRIQQAIRSLVEKILSQQKPNGLFGN 236 (326)
T ss_dssp ----------S-ST-C--------HHHHHHHHHHHHHHHHTTTS--TT-GGGHHHHHHHHHHHHHHHHHTB-TTS-BSS
T ss_pred ----------cCCC-C--------CccHHHHHHHHHHHHhccCc--Cc-HhHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 0111 1 57899999999999876321 11 111 24577778888999999998874
No 64
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=90.20 E-value=0.78 Score=48.42 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCccccc-CCCCCCcccccCCCCCCCCCcccHHHHHHHHH
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMF-RHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~-~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~ 240 (320)
-|.++++.||..+|.. ...+++.+||.+.|..+ |.|--.| .+.+++ |. . -..|.|++.|.++..
T Consensus 298 RD~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~~---G~~lq~y~vdG~~~-~~---~----iQlD~~g~~i~~~~~ 362 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----DSALRSLDYLAKVQQDN---GMFPQNSWVDGKPY-WT---G----IQLDETAFPILLAYR 362 (648)
T ss_pred hhHHHHHHHHHHCCCH----HHHHHHHHHHHHHhccC---CCcCceeccCCCCC-CC---C----ccccHHHHHHHHHHH
Confidence 4999999999999964 45899999999999976 6663222 333222 32 1 257899999998876
Q ss_pred hcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 241 LSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 241 ~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
+.+. +.....+.++++++||...
T Consensus 363 l~~~-----~~~~~~~~vk~aadfl~~~ 385 (648)
T TIGR01535 363 LHRY-----DHAFYDKMLKPAADFIVKN 385 (648)
T ss_pred HHHc-----CcHHHHHHHHHHHHHHHHc
Confidence 6531 1222346799999999985
No 65
>PLN02279 ent-kaur-16-ene synthase
Probab=89.84 E-value=0.69 Score=49.83 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHIS 212 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~ 212 (320)
.+...+++|+..+.. + ...+..||||.+.+ ...--... .|.--.+++||++.|..| |.|+..
T Consensus 34 ~~~~~~~~i~~~l~~----~---e~s~s~YDTAWvam--v~~~~~~~-~p~Fp~~~~wil~nQ~~d---GsWg~~----- 95 (784)
T PLN02279 34 SFEGTKERIKKMFDK----V---ELSVSSYDTAWVAM--VPSPNSQQ-APLFPECVKWLLENQLED---GSWGLP----- 95 (784)
T ss_pred cchhHHHHHHHHhcc----C---cCCCchhhhHHHHh--cccCCCCC-CCCChHHHHHHHhcCCCC---CCCCCC-----
Confidence 345666777766531 1 12456799999644 33311222 577788999999999986 666421
Q ss_pred CCcccccCCCCCCCCCc---ccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh
Q 020852 213 KGGWTFSNKDHGWPVSD---CSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS 267 (320)
Q Consensus 213 ~GGW~Fs~~~~~~Pd~D---~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~ 267 (320)
..+.....| +|..+|.||..-.. ..+.+++|+.+|..
T Consensus 96 --------~~~~~~~~D~ll~TlAcvlAL~~w~~----------~~~~~~~gl~fi~~ 135 (784)
T PLN02279 96 --------HDHPLLVKDALSSTLASILALKKWGV----------GEEQINKGLQFIEL 135 (784)
T ss_pred --------CCCcchhHHhhHHHHHHHHHHHHHhc----------CcccchhhHHHHHH
Confidence 111112233 68888888876331 23445666666653
No 66
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=88.21 E-value=1.8 Score=41.74 Aligned_cols=106 Identities=10% Similarity=0.070 Sum_probs=64.2
Q ss_pred CChhhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHH
Q 020852 158 GSQTWDCALAVQALLACNL---TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSES 234 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~a 234 (320)
.-++|.+++++.+++.+.. .+++.+..+++.+||.+.-...+ .|+|....+. .|. ..++ -++..+-+.+
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~-~Gg~~~~~~~--~g~----~~~~-~~~l~~~a~~ 120 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPD-HGGWYFALDQ--DGR----PVDA-TKDLYSHAFA 120 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCC-CCCEEEEEcC--CCC----Cccc-ccchHHHHHH
Confidence 4579999999999997632 34456778899999998655321 1444333210 111 0011 1356778889
Q ss_pred HHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCc
Q 020852 235 FLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ-VRKQRY 275 (320)
Q Consensus 235 L~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Q-n~dGGW 275 (320)
+.||..+.+.. |.+...+..++.++++.+.. +++||+
T Consensus 121 l~ala~~~~at----~d~~~l~~A~~~~~~l~~~~~~~~g~~ 158 (384)
T cd00249 121 LLAAAQAAKVG----GDPEARALAEETIDLLERRFWEDHPGA 158 (384)
T ss_pred HHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 99998775421 23333456667777777655 345665
No 67
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.16 E-value=0.99 Score=41.27 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCC-cccHHHHHHHHHhcCCCccccCCCCCHHHHHHH
Q 020852 183 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVS-DCSSESFLCCLHLSTMTPEIVGEKMEPERFYDA 261 (320)
Q Consensus 183 ~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~-D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~ra 261 (320)
.+.+-.+|+..+|+.| ||..|- .+-||+ .+|=.|++-+-.++. +.++.++-
T Consensus 7 ~l~rvi~fi~~Rrhed---------------GGy~f~---~~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---------------GGYCFV---SQLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---------------CCeEEe---ccCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4688899999999865 666662 234676 789999988877663 34678889
Q ss_pred HHHHHh-cccCCCCccc
Q 020852 262 ANFMLS-IQVRKQRYRA 277 (320)
Q Consensus 262 v~wLl~-~Qn~dGGW~a 277 (320)
++||.+ ||...+|.+.
T Consensus 59 iefL~d~~qt~~~~~a~ 75 (274)
T COG1689 59 IEFLYDQMQTAGVGVAM 75 (274)
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 999987 8999888865
No 68
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=80.41 E-value=3.6 Score=47.19 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhhhcCCCcee--cc--CCChhhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHHhcccCCCCCCCcccc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QS--FGSQTWDCALAVQALLACNLTDEI-GPILMKAHDFLKNSQVTDNPQGDFRSM 207 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~--~~s~vWdTa~a~~AL~~aG~~~~~-~~~l~kA~~wL~~~Q~~~~~~Gdw~~~ 207 (320)
++.+..+...| +.+||++- .. .-..+|.|||++..|+++...-.+ ...|.+|.+||..+|..+ |++.+.
T Consensus 973 l~~GyqrqL~y--k~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~---GsF~e~ 1046 (1436)
T KOG1366|consen 973 LEQGYQRQLTY--KRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKEN---GSFKEV 1046 (1436)
T ss_pred HHHHHHHHHhh--hccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccC---ceEecc
Confidence 44555556556 57899653 23 246899999999999999543221 567899999999998875 877654
No 69
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=80.22 E-value=3 Score=39.97 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=67.7
Q ss_pred HHHHHHhhhhhhcCCCceeccC---C-----ChhhHH--HHHHHHHHHc-C-CCC------CccHHHHHHHHHHHhcccC
Q 020852 136 KHLARITEYFWVGEDGLRVQSF---G-----SQTWDC--ALAVQALLAC-N-LTD------EIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 136 ~~l~~l~~~l~~~~dG~~~q~~---~-----s~vWdT--a~a~~AL~~a-G-~~~------~~~~~l~kA~~wL~~~Q~~ 197 (320)
+++....+++...++|.+...+ + ..+|.. +.++.+|+++ . ++. .+...+++.++.|.+.|..
T Consensus 151 ~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~ 230 (336)
T PF07470_consen 151 RQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDE 230 (336)
T ss_dssp HHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 4445555566656788765432 1 124655 4566666643 1 111 2344566777778887774
Q ss_pred CCCCCCcccccCCCCCCcccccCCCC---CCCCCcccHHHHHHHHH-hcCCCccccCCCCCHHHHHHHHHHHHhc-ccCC
Q 020852 198 DNPQGDFRSMFRHISKGGWTFSNKDH---GWPVSDCSSESFLCCLH-LSTMTPEIVGEKMEPERFYDAANFMLSI-QVRK 272 (320)
Q Consensus 198 ~~~~Gdw~~~~~~~~~GGW~Fs~~~~---~~Pd~D~Ta~aL~AL~~-~~~~~~~~~g~~~~~~~i~rav~wLl~~-Qn~d 272 (320)
+ |-|. +..... .++|++.||.+.-||+. +... ....+...+..+++.+.|++. =++|
T Consensus 231 ~---G~w~------------~~~~~~~~~~~~etSatA~~a~~l~~gi~~g---~~d~~~y~~~a~~a~~~l~~~~~~~d 292 (336)
T PF07470_consen 231 D---GLWY------------QDLDDPDPGNYRETSATAMFAYGLLRGIRLG---LLDPEEYRPAAEKALEALLSNAIDPD 292 (336)
T ss_dssp T---SBEB------------SBTTTTTTTS-BEHHHHHHHHHHHHHHHHTT---SSTHHHHHHHHHHHHHHHHHCEB-TT
T ss_pred C---CCcc------------eecCCCCCCCcccHHHHHHHHHHHHHHHHcC---CCccHHHHHHHHHHHHHHHhCccCCC
Confidence 3 4443 322222 36888889988888855 3321 111123457899999999999 6677
Q ss_pred CC
Q 020852 273 QR 274 (320)
Q Consensus 273 GG 274 (320)
|.
T Consensus 293 G~ 294 (336)
T PF07470_consen 293 GK 294 (336)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 70
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=78.58 E-value=17 Score=34.93 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhhhcCCCceecc-------C--CChhhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhccc
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQS-------F--GSQTWDCALAVQALLACNL---TDEIGPILMKAHDFLKNSQV 196 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~-------~--~s~vWdTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~ 196 (320)
..+++++.|.+.++..+.|.+... . +-.+||-++++.||+++.. .+++....++..++|.++..
T Consensus 77 ~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~ 152 (384)
T cd00249 77 AAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFW 152 (384)
T ss_pred HHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 345666677776553332544321 1 2249999999999997632 23456678888999988876
No 71
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=73.03 E-value=22 Score=34.06 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhhhcCCCceec-----c---CCChhhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhcccC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQ-----S---FGSQTWDCALAVQALLAC---NLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q-----~---~~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
.+++++.|.+.++..++|.+.. + -...+||.+|++.||+++ |.+ +....++++.++|.+.-..
T Consensus 45 A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~~tg~~-~~~~~A~~~~~~l~~~~~d 118 (346)
T PF07221_consen 45 AEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEARATGDP-EALELAEQTLEFLERRFWD 118 (346)
T ss_dssp HHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHHCTT-T-THHHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHhcc
Confidence 5566677777666445454431 1 134799999999999985 433 4567788899999887654
No 72
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=68.22 E-value=15 Score=35.13 Aligned_cols=52 Identities=31% Similarity=0.341 Sum_probs=36.3
Q ss_pred cCCCceeccC--C-----ChhhHHHHHHHHHH---HcCCCC--CccHHHHHHHHHHHhcccCCC
Q 020852 148 GEDGLRVQSF--G-----SQTWDCALAVQALL---ACNLTD--EIGPILMKAHDFLKNSQVTDN 199 (320)
Q Consensus 148 ~~dG~~~q~~--~-----s~vWdTa~a~~AL~---~aG~~~--~~~~~l~kA~~wL~~~Q~~~~ 199 (320)
.++|.|.+.- . -.+=.||+++.||. ..|..+ ++.+.++||.+.|.++++.++
T Consensus 229 ~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~d 292 (336)
T PF07470_consen 229 DEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPD 292 (336)
T ss_dssp TTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TT
T ss_pred CCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCC
Confidence 4789887543 1 23456778888884 457763 578889999999999966553
No 73
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=66.33 E-value=13 Score=35.65 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHH---cCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCC-----CCccc
Q 020852 160 QTWDCALAVQALLA---CNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWP-----VSDCS 231 (320)
Q Consensus 160 ~vWdTa~a~~AL~~---aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~P-----d~D~T 231 (320)
.+|-++-.+..++. .| .+++.+..+++++||.+.-... ..|||.++....+ | +.-+.
T Consensus 19 ~~~~q~R~~~~fa~a~~~g-~~~~l~~A~~~~~fl~~~~~D~-------------~~Gg~~~~~~~~~-~~~~~~~~Y~~ 83 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRLG-RPEYLELAEHGFDFLRKHFRDP-------------EYGGWYRSLDDGG-PLDPQKDLYDQ 83 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHTTBTT-------------TTSSBSSEEETTE-EEE--EEHHHH
T ss_pred eeeeeHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhcccC-------------CCCCEEEEeCCCC-CCccccchHHH
Confidence 45555555555543 46 3346788899999999977632 2355555443333 2 22256
Q ss_pred HHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc-ccCC-CCc
Q 020852 232 SESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI-QVRK-QRY 275 (320)
Q Consensus 232 a~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~-Qn~d-GGW 275 (320)
+.+++||..+.. .|.+...+.+++++++|... ++++ ||+
T Consensus 84 af~l~ala~~~~-----tg~~~~~~~A~~~~~~l~~~~~d~~~g~~ 124 (346)
T PF07221_consen 84 AFALLALAEARA-----TGDPEALELAEQTLEFLERRFWDPEGGGY 124 (346)
T ss_dssp HHHHHHHHHHHC-----TT-TTHHHHHHHHHHHHHHHTEETTTTEE
T ss_pred HHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcccccCcc
Confidence 889999877432 24444457778888888776 5665 443
No 74
>PLN02592 ent-copalyl diphosphate synthase
Probab=56.29 E-value=44 Score=36.37 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=54.9
Q ss_pred CccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccC----CChhhHHHHHHHHHHHcCCCCCccHH
Q 020852 108 RYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSF----GSQTWDCALAVQALLACNLTDEIGPI 183 (320)
Q Consensus 108 ~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~----~s~vWdTa~a~~AL~~aG~~~~~~~~ 183 (320)
|.+.+.+..++-.++.-.......|.|-..+++|.+- +.+||+|-.+. ..-+=.|..++.||..-++. +..
T Consensus 91 g~~S~S~YDTAWVAmVp~~~g~~~p~FP~~~~wIl~n--Q~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~ 165 (800)
T PLN02592 91 GEISISAYDTAWVALVEDINGSGTPQFPSSLQWIANN--QLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLH---PEK 165 (800)
T ss_pred CCcCCcHHHhHHHhhcccCCCCCCCCCHHHHHHHHHc--cCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhcc---HHH
Confidence 3345555555543434433334557788999988876 57899996542 23456788899999886655 357
Q ss_pred HHHHHHHHHh
Q 020852 184 LMKAHDFLKN 193 (320)
Q Consensus 184 l~kA~~wL~~ 193 (320)
|.|+..||.+
T Consensus 166 i~rGl~fi~~ 175 (800)
T PLN02592 166 CEKGMSFFRE 175 (800)
T ss_pred HHHHHHHHHH
Confidence 8999999886
No 75
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=53.30 E-value=1.5e+02 Score=31.12 Aligned_cols=124 Identities=10% Similarity=0.117 Sum_probs=69.2
Q ss_pred HhhhhhhcCCCceeccCC----ChhhHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCc
Q 020852 141 ITEYFWVGEDGLRVQSFG----SQTWDCALAVQALL-ACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGG 215 (320)
Q Consensus 141 l~~~l~~~~dG~~~q~~~----s~vWdTa~a~~AL~-~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GG 215 (320)
|.+..|..+.|.+.+..+ +.+-|.++. +|. ..|+-+..+|.+...++-+.+.=... ..|.+..+..+.-.|
T Consensus 453 i~~~~w~~~~g~F~~~~~~~~~~~~vDaSlL--~l~~~~g~l~~~Dpr~v~Tv~~I~~~L~~~-~~ggi~RY~~D~y~~- 528 (616)
T TIGR01577 453 VEERFWLPERQVFAKGIKLMVLDKTIDISIL--GISVPFNLIAPDDERMVKMAEAIEKHLTSP-IVGGIKRYENDPYVG- 528 (616)
T ss_pred HHHhccCCCCCEEEEeecCCCCCCcccHHHH--hHHHhcCCCCCCChHHHHHHHHHHHHhccc-CCCeeeCCCCCCCCC-
Confidence 444556444456665554 667788754 443 35654333788888888777644321 124454332221111
Q ss_pred ccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCH---HHHHHHHHHHHhcccCCCCccc
Q 020852 216 WTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEP---ERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 216 W~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~---~~i~rav~wLl~~Qn~dGGW~a 277 (320)
|.|=+=||.+...++.++.+..... ...... +.-++-++|+++..|+.|=++.
T Consensus 529 --------g~~w~i~T~wla~~~~~~g~~~~~~-~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~E 584 (616)
T TIGR01577 529 --------GNPWILTTLWLSQLYIKQGRILKAL-NHNGADIYLQKSKKLLKWVMDHRTDLGLLPE 584 (616)
T ss_pred --------CCcHHHHHHHHHHHHHHhccccccc-ccchhhhHHHHHHHHHHHHHhcCCCCCCCcc
Confidence 2244558999999988776422100 000001 2444558999999999998876
No 76
>PLN02279 ent-kaur-16-ene synthase
Probab=53.16 E-value=1.3e+02 Score=32.74 Aligned_cols=58 Identities=7% Similarity=-0.045 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 020852 135 KKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKN 193 (320)
Q Consensus 135 ~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~ 193 (320)
.++++.|...+- .-+|.-...+...+......+-.|...|++..+.+.|+.+++.+-+
T Consensus 245 ~~~~~yL~~~~~-~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~ 302 (784)
T PLN02279 245 AGCLRYLRSLLQ-KFGNAVPTVYPLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYR 302 (784)
T ss_pred hHHHHHHHHHHH-hcCCCCCCCCcccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHH
Confidence 466666665432 3344433444566899999999999999998888899999988864
No 77
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=52.47 E-value=2.2e+02 Score=27.20 Aligned_cols=46 Identities=9% Similarity=0.079 Sum_probs=30.8
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccccc
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDN 280 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~ 280 (320)
++-.+.+|+.+... .+.+...+.++++++|+.+.+.++|.|+....
T Consensus 167 ~aGI~~~L~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~ 212 (343)
T cd04794 167 LAGILYILLQTPLF----LLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLG 212 (343)
T ss_pred HHHHHHHHHhhhhh----cCCccHHHHHHHHHHHHHHhhccCCCCCCccC
Confidence 44445555554321 12234568899999999999999999977543
No 78
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=51.04 E-value=16 Score=38.77 Aligned_cols=88 Identities=7% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CCCccHHHHHHHHHHHhcccCCCCCCCcccc----cCCCCCC---cccccCCCCCCCCCcccHHHHHHHHHhcCCCcccc
Q 020852 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSM----FRHISKG---GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIV 249 (320)
Q Consensus 177 ~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~----~~~~~~G---GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~ 249 (320)
+.++...+++++-=|+.++-.+ ..|..--. .+.. .| .|+|.+.- | =|.+.++.||++++
T Consensus 246 ~~~~~~~~~rS~lvLK~~~d~~-~~GAiIAA~Tts~pe~-~g~~~n~dYryvW---~--RD~a~~a~AL~~~G------- 311 (648)
T TIGR01535 246 NGKGNSLYYVSMMILKAHEDKT-NPGAYIASLSIPWGDG-QADDNTGGYHLVW---P--RDLYQVANAFLAAG------- 311 (648)
T ss_pred CchHHHHHHHHHHHHHHhcCCC-CCCcEEEecCCCCCcc-CCCCCCCceEEEe---h--hhHHHHHHHHHHCC-------
Confidence 3445778888887777777652 23543111 1111 12 25554431 2 15888889998876
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCccc-cccCC
Q 020852 250 GEKMEPERFYDAANFMLSIQVRKQRYRA-IDNLI 282 (320)
Q Consensus 250 g~~~~~~~i~rav~wLl~~Qn~dGGW~a-fe~~~ 282 (320)
..+..++..+||...|.++|.|.. |..++
T Consensus 312 ----~~~~a~~~~~~l~~~~~~~G~~lq~y~vdG 341 (648)
T TIGR01535 312 ----DVDSALRSLDYLAKVQQDNGMFPQNSWVDG 341 (648)
T ss_pred ----CHHHHHHHHHHHHHHhccCCCcCceeccCC
Confidence 468889999999999999998843 44443
No 79
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=46.62 E-value=2.8e+02 Score=27.28 Aligned_cols=184 Identities=9% Similarity=0.110 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccccc--chHHhhccccc--ccCCCcHHHHHHHHHHhhhhhhcC---CC-ce-eccCCC
Q 020852 89 RDKSLKVAMKHINYEDEASRYITIGC--VEKPLNMLSCW--VEDPNSDYFKKHLARITEYFWVGE---DG-LR-VQSFGS 159 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~~~~~~p--v~~~l~~L~~~--~~~pd~~~v~~~l~~l~~~l~~~~---dG-~~-~q~~~s 159 (320)
.++.++.+.+|.......+| +.| +|.+..++..+ -+.-.+|...++...+.+++...+ +| .+ ...+.-
T Consensus 54 d~~yl~~l~~~~d~~i~~~g---~~~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~ 130 (357)
T COG4225 54 DAEYLDYLKTWFDEQIDEGG---LPPRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPH 130 (357)
T ss_pred cHHHHHHHHHHHHhhhccCC---CCccchhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchh
Confidence 44556666666544333333 333 45554443333 234566778888888888876543 34 22 223466
Q ss_pred hhhHHHHHHHHH--HHcCCCCCccHHHHH-HHHHHHhcccCCCCC-CCcccccCCCCCCcccccCCC--CCCCCCcccHH
Q 020852 160 QTWDCALAVQAL--LACNLTDEIGPILMK-AHDFLKNSQVTDNPQ-GDFRSMFRHISKGGWTFSNKD--HGWPVSDCSSE 233 (320)
Q Consensus 160 ~vWdTa~a~~AL--~~aG~~~~~~~~l~k-A~~wL~~~Q~~~~~~-Gdw~~~~~~~~~GGW~Fs~~~--~~~Pd~D~Ta~ 233 (320)
|+|+=++-.-++ ++.|..-...+-+.. -.+|....+...++. |=|.-.+-....+-|.=+..+ ..|.- --+|
T Consensus 131 Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~~sG~~~fWaR--g~gW 208 (357)
T COG4225 131 QMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANNESGEPAFWAR--GNGW 208 (357)
T ss_pred HhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccccCCCceeeec--ccch
Confidence 899877644443 233332111222333 346777777665544 433211111122233211111 11111 1345
Q ss_pred HHHHHHHhc-CCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 234 SFLCCLHLS-TMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 234 aL~AL~~~~-~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
+.+||..+- ..|.++-+...-.+.+++-|+=|+..|..+|=|-+
T Consensus 209 ~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~t 253 (357)
T COG4225 209 YAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHT 253 (357)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhh
Confidence 666664432 22221111112246788899999999999999966
No 80
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=46.11 E-value=2.5e+02 Score=26.11 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcC
Q 020852 164 CALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLST 243 (320)
Q Consensus 164 Ta~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~ 243 (320)
..+++..+.+. -.+++.+.++++.++|.+....+ .++. .++.....--+| .+.+|-.+.+|..+.+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~---~~~~-~~~~~~~~~~G~---------~hG~aGi~~~L~~l~~ 153 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERG---DPAL-LWPDFDRVDHGL---------LHGWAGIALFLLRLYK 153 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc---cccc-ccccCCCCCCcc---------ccCcHHHHHHHHHHHH
Confidence 34444444444 34456677889999998875543 1221 111111111122 2335555555554432
Q ss_pred CCccccCCCCCHHHHHHHHHHHHhccc-CCCCcc
Q 020852 244 MTPEIVGEKMEPERFYDAANFMLSIQV-RKQRYR 276 (320)
Q Consensus 244 ~~~~~~g~~~~~~~i~rav~wLl~~Qn-~dGGW~ 276 (320)
. .+.+...+..+++++++++... .++||.
T Consensus 154 ~----t~d~~~l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 154 A----TGDSRYLELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred H----HCCHHHHHHHHHHHHHHHHhhccCCCCce
Confidence 1 1222234667778888776544 457774
No 81
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.84 E-value=51 Score=35.00 Aligned_cols=116 Identities=12% Similarity=-0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCCC---CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHH
Q 020852 164 CALAVQALLACNLTD---EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240 (320)
Q Consensus 164 Ta~a~~AL~~aG~~~---~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~ 240 (320)
-++++.||+.+|..- ++-...+++.+|+.+.++.+ --...+++......++ .+|=|..+.||+.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~----rl~~~~~~G~a~~~g~---------leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD----RLLRRYRGGEAAVAGL---------LEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc----chheeeecCccccccc---------chhHHHHHHHHHH
Confidence 388999999986532 34567789999999988863 1222334433333333 3456666777766
Q ss_pred hcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc
Q 020852 241 LSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL 297 (320)
Q Consensus 241 ~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~ 297 (320)
+-+...+ ..--+.+++-+-+.+...+.+.|||-...... ....+..-+|-|-
T Consensus 480 lye~t~d---~~yL~~A~~L~~~~i~~f~d~~gGf~~t~~~~--~~l~ir~~~~~D~ 531 (667)
T COG1331 480 LYEATGD---LAYLEKAIELADEAIADFWDDEGGFYDTPSDS--EDLLIRPKEPTDG 531 (667)
T ss_pred HHHhhCc---HHHHHHHHHHHHHHHHHhcCCCCCcccCCCcc--cccccCCCCCCCC
Confidence 6532100 00112344445556667788888864433332 4455555555544
No 82
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=42.11 E-value=19 Score=35.96 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHhcccCCCCcccc
Q 020852 254 EPERFYDAANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 254 ~~~~i~rav~wLl~~Qn~dGGW~af 278 (320)
+..+...|.+||...|++.|||+--
T Consensus 378 H~aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 378 HSAAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCcch
Confidence 4467899999999999999999863
No 83
>PHA01516 hypothetical protein
Probab=41.49 E-value=15 Score=28.21 Aligned_cols=42 Identities=31% Similarity=0.345 Sum_probs=34.9
Q ss_pred CceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCC
Q 020852 151 GLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDN 199 (320)
Q Consensus 151 G~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~ 199 (320)
|-||+..|.++||-++.-+-|.|.|+++. =++|-..+|.-|+
T Consensus 47 ~dycn~~glqm~de~ltd~dleem~ltdr-------wvdwy~e~~~~d~ 88 (98)
T PHA01516 47 PDYCNANGLQMWDESLTDQDLEEMELTDR-------WVDWYSECQCYDD 88 (98)
T ss_pred ccccCccchhhhhhhcchhHHHHccchhh-------hhhhhhhhccccC
Confidence 45677778999999999999999999754 4789988888764
No 84
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=38.72 E-value=59 Score=33.40 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHhcccCCCCCCCcc----cccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHH
Q 020852 181 GPILMKAHDFLKNSQVTDNPQGDFR----SMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPE 256 (320)
Q Consensus 181 ~~~l~kA~~wL~~~Q~~~~~~Gdw~----~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~ 256 (320)
....+...++++..|... ...-+. ........|||.=......+.+.| +.--|.|+..+-... +.+.-.+
T Consensus 10 ~~~~~~~~~~~l~~~~d~-ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~-~g~wl~a~a~~~~~~----~D~~l~~ 83 (520)
T PF07944_consen 10 KRRQELNRAYLLPLDPDR-LLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHD-VGKWLEAAAYAYAYT----GDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHhHHHH-HhhhcCcccCCCCccccCCCCccCCCCCccCCCc-HHHHHHHHHHHHHHC----CCHHHHH
Confidence 456677777887766542 111111 112334568886222333334444 555555554332111 1222357
Q ss_pred HHHHHHHHHHhcccCCCCcccccc
Q 020852 257 RFYDAANFMLSIQVRKQRYRAIDN 280 (320)
Q Consensus 257 ~i~rav~wLl~~Qn~dGGW~afe~ 280 (320)
.+++-|+.|+..|.+||=.++|..
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~ 107 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPE 107 (520)
T ss_pred HHHHHHHHHHHhccCCceeccccc
Confidence 788999999999999996676644
No 85
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=36.97 E-value=2.5e+02 Score=29.75 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhh----hhcCCCceeccCC---ChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcc
Q 020852 133 YFKKHLARITEYF----WVGEDGLRVQSFG---SQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFR 205 (320)
Q Consensus 133 ~v~~~l~~l~~~l----~~~~dG~~~q~~~---s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~ 205 (320)
..++..+.|++.+ +..+.|.+.|.++ +.+.|.++....+ .|+-+..++++.+.++=+.+.=..+. +.+.
T Consensus 444 ~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~~~~~~vDasll~l~~--fg~i~~~D~~~~~t~~~I~~~L~~~~--~gi~ 519 (612)
T COG3387 444 HWRKTADELKEAVLRRGYAEDGGYFVRSLGRKPDDTVDASLLGLVL--FGFIPPDDPRILATVEAIERELLVDG--GGIR 519 (612)
T ss_pred HHHHHHHHHHHHHHHhcccccCCeeehhcCCCccccccHHHhhccc--cCccCCCCHHHHHHHHHHHHHHhhcC--CcEE
Confidence 3455555555433 2234467777776 8899988765554 67654337878887777776655441 1343
Q ss_pred cccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 206 SMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 206 ~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.+......|+ .+.+.|=..||-|-...+.++.+ .++.++-++||+..++++|=.+.
T Consensus 520 RY~~~~~d~~-----~~~~~~w~i~t~Wl~~~~~~~g~-----------~~~a~~ll~~l~~~a~~~gll~E 575 (612)
T COG3387 520 RYNNEYDDGL-----GGDNGPWIITTLWLSEYYLALGR-----------LDEAKKLLEWLLAFASPLGLLPE 575 (612)
T ss_pred cCcccccccc-----CCCCCcceeehhHHHHHHHHccc-----------hHHHHHHHHHHHHhcCCCCCcch
Confidence 2221001111 11113556689999999988763 35666779999999999998877
No 86
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.62 E-value=4.1e+02 Score=25.80 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHH--HHHHHHhcCCCccccCCCCCHHHHHH
Q 020852 183 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSES--FLCCLHLSTMTPEIVGEKMEPERFYD 260 (320)
Q Consensus 183 ~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~a--L~AL~~~~~~~~~~~g~~~~~~~i~r 260 (320)
.+++-..||..+|..+ |++ +.+.+- .+ ||-.| +.|-+.+-... .-++.+ +
T Consensus 229 ~~erlirWli~RQ~~s---gGf--------------qGR~NK--p~-DTCYaFWigasLklL~~~-----~~~d~~---~ 280 (347)
T KOG0367|consen 229 KVERLIRWLIQRQVSS---GGF--------------QGRTNK--PV-DTCYAFWIGASLKLLDAD-----WLIDKQ---V 280 (347)
T ss_pred CHHHHHHHHHHHhhcc---CCc--------------CCCCCC--Cc-hhHHHHHHHHHHHHccch-----HhhhHH---H
Confidence 4899999999999975 443 222221 22 34433 33333322110 011222 3
Q ss_pred HHHHHHhcccCC-CCcccccc
Q 020852 261 AANFMLSIQVRK-QRYRAIDN 280 (320)
Q Consensus 261 av~wLl~~Qn~d-GGW~afe~ 280 (320)
-.++|++.|.+= |||+-|..
T Consensus 281 lr~fll~~Q~~~iGGFsK~P~ 301 (347)
T KOG0367|consen 281 LRKFLLSTQDKLIGGFSKWPE 301 (347)
T ss_pred HHHHHHHhhhhhcCcccCCCc
Confidence 467999999988 99988754
No 87
>PLN00119 endoglucanase
Probab=33.61 E-value=1.8e+02 Score=29.99 Aligned_cols=38 Identities=13% Similarity=0.332 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHH----cCCCCCccHHHHHHHHHHHhcccCC
Q 020852 161 TWDCALAVQALLA----CNLTDEIGPILMKAHDFLKNSQVTD 198 (320)
Q Consensus 161 vWdTa~a~~AL~~----aG~~~~~~~~l~kA~~wL~~~Q~~~ 198 (320)
+|.-++.+.-|.. .-.+.++.++|++++.|.+.+..-.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~nY~~aL~~sl~Ff~aQRsG~ 50 (489)
T PLN00119 9 LWTLSICIVLLVMSMARGAVSTNYGEALTKSLLYFEAQRSGK 50 (489)
T ss_pred hhHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhHhcCCCC
Confidence 5666655554443 2234478999999999998876543
No 88
>PF11329 DUF3131: Protein of unknown function (DUF3131); InterPro: IPR021478 This bacterial family of proteins has no known function.
Probab=32.42 E-value=3.7e+02 Score=26.60 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhhhhcCCCcee--ccC-CChhhHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhcccCCCCCCCcc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QSF-GSQTWDCALAVQALLAC---NLTD--EIGPILMKAHDFLKNSQVTDNPQGDFR 205 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~~-~s~vWdTa~a~~AL~~a---G~~~--~~~~~l~kA~~wL~~~Q~~~~~~Gdw~ 205 (320)
-+++...++++. ....|.-- ++. ...+||++.-+.||.+| |+-. +++.+|+|.+..|.+...-+ |...
T Consensus 4 A~~AWrYF~~n~-~~~TGLvn~~~~~~~tT~wdiG~yL~al~AA~~lglIs~~e~~~Rl~~~L~tL~~lpl~~---g~lP 79 (367)
T PF11329_consen 4 ARKAWRYFENNT-QPETGLVNSVDGYPSTTMWDIGSYLMALVAARELGLISREEFDQRLEKTLATLEKLPLFR---GHLP 79 (367)
T ss_pred HHHHHHHHHhcC-CCCCCCcccCCCCCccChHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcccC---CcCc
Confidence 356666666662 23346421 233 56789999999999876 5533 56788888999998877654 4332
Q ss_pred c-ccC--CCCCCcccccCCC-CCCCCCcccHHHHHHHHHhcC
Q 020852 206 S-MFR--HISKGGWTFSNKD-HGWPVSDCSSESFLCCLHLST 243 (320)
Q Consensus 206 ~-~~~--~~~~GGW~Fs~~~-~~~Pd~D~Ta~aL~AL~~~~~ 243 (320)
- .|. ...+.+-.=+... .||+-+ |.+.-|.+|..+..
T Consensus 80 n~~Y~t~T~~~~~~~~~p~~~~gwSav-D~GrLl~~L~il~~ 120 (367)
T PF11329_consen 80 NKWYNTQTGQPVDYGNQPGERIGWSAV-DIGRLLIALRILKQ 120 (367)
T ss_pred cceeecCcCcccccCCCCCccCCccHh-hHHHHHHHHHHHHH
Confidence 1 121 1112111111111 344333 47777888877764
No 89
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=30.82 E-value=4.3e+02 Score=28.57 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCc
Q 020852 167 AVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTP 246 (320)
Q Consensus 167 a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~ 246 (320)
++..+.+....+.+...+.++.++|.+.+..++ +|..........||+. | ++-.+.+|..+...
T Consensus 595 ~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~~~~~~G~aH-----G------~sGi~~aL~~l~~~-- 658 (825)
T cd04792 595 VLLSLYELFLSERFLDLALKCGDHLLENASNED---GGIGPAEQPNLTGFAH-----G------ASGIAWALLRLYKV-- 658 (825)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHhhhhcc---CCcccccccccccccc-----c------HHHHHHHHHHHHHH--
Confidence 333333332233456678888999888766541 2211001111233332 1 44444555544321
Q ss_pred cccCCCCCHHHHHHHHHHHHhcccC-CCCcc
Q 020852 247 EIVGEKMEPERFYDAANFMLSIQVR-KQRYR 276 (320)
Q Consensus 247 ~~~g~~~~~~~i~rav~wLl~~Qn~-dGGW~ 276 (320)
.+.+.-.+.+..++++..+..++ .++|.
T Consensus 659 --~~d~~~~~~a~~~l~~~~~~~~~~~~~w~ 687 (825)
T cd04792 659 --TGDSRYLKLAHKALKYERRLFSEEGWNWP 687 (825)
T ss_pred --cCcHHHHHHHHHHHHHHHHhcCHhhcCCC
Confidence 12222345667777776655443 35675
No 90
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=30.33 E-value=1.1e+02 Score=30.26 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=43.9
Q ss_pred ccccccc-CCCcHHHHHHHHHHhhhhhhcCC-----CceeccCCC------hhhHHHHHHHHHHHcCCCCCccHHHHHHH
Q 020852 121 MLSCWVE-DPNSDYFKKHLARITEYFWVGED-----GLRVQSFGS------QTWDCALAVQALLACNLTDEIGPILMKAH 188 (320)
Q Consensus 121 ~L~~~~~-~pd~~~v~~~l~~l~~~l~~~~d-----G~~~q~~~s------~vWdTa~a~~AL~~aG~~~~~~~~l~kA~ 188 (320)
++-+.|+ ..|+|++++..+-|. ..++ |.+..+-|| +||--++++|+|.+-. +...+.-+
T Consensus 308 a~PYLG~c~~dDpvY~~TRk~iL----S~eNPYy~eG~~a~GiGSpHTp~~yvWpiaLaiqgLTa~D-----~~ek~~iL 378 (434)
T COG3538 308 AAPYLGFCEKDDPVYQNTRKTIL----SSENPYYYEGKYASGIGSPHTPDHYVWPIALAIQGLTAND-----DSEKKEIL 378 (434)
T ss_pred hhhhhccccCCCHHHHHHHHHHH----hcCCCceecceeeccCCCCCCCCcccchHHHHHhhcccCC-----hHHHHHHH
Confidence 4455554 478999988877443 3443 444433333 7999999999987543 45578888
Q ss_pred HHHHhc
Q 020852 189 DFLKNS 194 (320)
Q Consensus 189 ~wL~~~ 194 (320)
++|+..
T Consensus 379 ~~L~~t 384 (434)
T COG3538 379 DMLKAT 384 (434)
T ss_pred HHHHhc
Confidence 999873
No 91
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=29.32 E-value=2.1e+02 Score=27.34 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.8
Q ss_pred CCccHHHHHHHHHHHhcccCCCCCCCccc
Q 020852 178 DEIGPILMKAHDFLKNSQVTDNPQGDFRS 206 (320)
Q Consensus 178 ~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~ 206 (320)
+++.+.++++++|+.+.+..+ |.|..
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~---g~w~~ 209 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPS---GNFPS 209 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccC---CCCCC
Confidence 456788999999999887543 66754
No 92
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=28.95 E-value=4.3e+02 Score=26.01 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=56.5
Q ss_pred HHHHHhhhhhhcCCCceeccC-----CC--hhhHHHHHHHHHHH---cCCC-CCccHHHHHHHHHHHhcccCCCCCCCcc
Q 020852 137 HLARITEYFWVGEDGLRVQSF-----GS--QTWDCALAVQALLA---CNLT-DEIGPILMKAHDFLKNSQVTDNPQGDFR 205 (320)
Q Consensus 137 ~l~~l~~~l~~~~dG~~~q~~-----~s--~vWdTa~a~~AL~~---aG~~-~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~ 205 (320)
-++.|.++ ++++|+|.|.- +| ..=.||....||.. .|.- .++.+.++||.+=|+.+=..+...|.-+
T Consensus 237 ~v~al~r~--Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~~g~vs 314 (357)
T COG4225 237 LVDALIRY--QDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGEVGGVS 314 (357)
T ss_pred HHHHHHHh--hccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccccceee
Confidence 33344444 45788887632 11 34468888888887 5663 4567899999999999887663222111
Q ss_pred c--ccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHh
Q 020852 206 S--MFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHL 241 (320)
Q Consensus 206 ~--~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~ 241 (320)
. -+.+...|+--+ ...-|.+-+-+-++.+|+.+
T Consensus 315 ~~~~~~~~~~g~~~~---~~~~~~~~~q~~g~g~~~la 349 (357)
T COG4225 315 LGTIVGHDLDGYRDY---YPSRPTPYGQALGLGALLLA 349 (357)
T ss_pred cCccccccccccccc---ccCccccCCcchhhHHHHHH
Confidence 0 112222333221 11225555566666676654
No 93
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=25.98 E-value=87 Score=26.80 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcC
Q 020852 184 LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLST 243 (320)
Q Consensus 184 l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~ 243 (320)
|+++++|+.+++-.- + .+-. ..|+ -+..||.+.+-.||...+-
T Consensus 2 ie~~I~w~~~r~~~v---~-YSm~------~R~G-------~~s~DCSs~V~~ALr~aG~ 44 (145)
T PF05382_consen 2 IEKAINWMEARKGKV---T-YSMD------SRNG-------PDSYDCSSFVYQALRAAGF 44 (145)
T ss_pred HHHHHHHHHHhcCCc---e-Ehhh------hcCC-------CCcCchHHHHHHHHHHcCC
Confidence 689999998876431 1 1111 1111 1225999999999988764
No 94
>PLN02613 endoglucanase
Probab=25.21 E-value=2e+02 Score=29.70 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 020852 255 PERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 255 ~~~i~rav~wLl~~Qn~dGGW 275 (320)
.+.++-+.|||+.||..+|++
T Consensus 115 ldeikw~lD~llkm~~~~~~~ 135 (498)
T PLN02613 115 RSAIRWGTDFILRAHTSPTTL 135 (498)
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 467888999999998876554
No 95
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=24.90 E-value=72 Score=37.60 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHhcCCCccc-cCCCCCHHHHHHHHHHHHhcccCCCCccccccCC
Q 020852 229 DCSSESFLCCLHLSTMTPEI-VGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI 282 (320)
Q Consensus 229 D~Ta~aL~AL~~~~~~~~~~-~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~ 282 (320)
-.|+-.+++++.+....... ....-.+++++.++.=|+++|+.||+|+.+..+.
T Consensus 1171 EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~W~~~~ 1225 (1621)
T COG2373 1171 EQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGLWGGNG 1225 (1621)
T ss_pred hhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceeecCCCC
Confidence 34777777777765433211 1222335689999999999999999999987743
No 96
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=24.70 E-value=5.7e+02 Score=25.56 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=45.7
Q ss_pred cccccCCC-cHHHHHHHHHHhhhhhhcCCCceec---c------CCChhhHHHHHHHHHHHc---CCCCCccHHHHHHHH
Q 020852 123 SCWVEDPN-SDYFKKHLARITEYFWVGEDGLRVQ---S------FGSQTWDCALAVQALLAC---NLTDEIGPILMKAHD 189 (320)
Q Consensus 123 ~~~~~~pd-~~~v~~~l~~l~~~l~~~~dG~~~q---~------~~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~ 189 (320)
+..+..++ -..+..+++.+.+.- ..++|.|.- . ..-++|+.+|++.|++.+ |.+ +...+...|.+
T Consensus 68 ~~~g~~~~~~~~v~hG~~y~~~~~-R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~-~a~~~~~~a~~ 145 (388)
T COG2942 68 GLLGWRGPWLDAVAHGIAYLARVG-RDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPP-RADELLDEALD 145 (388)
T ss_pred HHhcCCccHHHHHHhHHHHHHhcC-cCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Confidence 33443433 235667777666543 245554431 1 133799999999999864 433 33678899999
Q ss_pred HHHhcccCC
Q 020852 190 FLKNSQVTD 198 (320)
Q Consensus 190 wL~~~Q~~~ 198 (320)
.|.+.-..+
T Consensus 146 ~l~~~~~~~ 154 (388)
T COG2942 146 VLERRFWRE 154 (388)
T ss_pred HHHHHHhhh
Confidence 988866554
No 97
>COG5360 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.67 E-value=7.6e+02 Score=25.32 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccccch---HHhhccccc---ccCCCcHHHHHHHHHHh---hhhhh----cCCCceec
Q 020852 89 RDKSLKVAMKHINYEDEASRYITIGCVE---KPLNMLSCW---VEDPNSDYFKKHLARIT---EYFWV----GEDGLRVQ 155 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~~~~~~pv~---~~l~~L~~~---~~~pd~~~v~~~l~~l~---~~l~~----~~dG~~~q 155 (320)
-++|.+-+-+||...+.+.+.|.|+|=. .++.-|+.. ....+++.+++-+..|. +||.. -+||.-
T Consensus 114 a~rar~lvdDWm~~hGk~i~giaW~pe~~aqRviawl~hs~vvl~~Ae~~fyr~fl~sLA~qvRyLr~ia~~~~dge~-- 191 (566)
T COG5360 114 AARARRLVDDWMRMHGKRIGGIAWEPEVTAQRVIAWLSHSPVVLAEAEDGFYRRFLKSLARQVRYLREIARAMPDGEE-- 191 (566)
T ss_pred HHHHHHHHHHHHHHhCccccccccCchHHHHHHHHHHhcchHHhhcCccHHHHHHHHHHHHHHHHHHHHHhhCCChHH--
Confidence 5677777899999999888778888821 222222221 12455566665554332 23321 256510
Q ss_pred cCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH---HhcccCC
Q 020852 156 SFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFL---KNSQVTD 198 (320)
Q Consensus 156 ~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL---~~~Q~~~ 198 (320)
---+-...|++..+++.. .++|++|.+=| +++|+.-
T Consensus 192 ------Rlrariala~a~~~~P~~-~s~ir~a~rnL~~eL~rqiLp 230 (566)
T COG5360 192 ------RLRARIALAMASLAMPAR-ASAIRAALRNLAPELERQILP 230 (566)
T ss_pred ------HHHHHHHHHHHHhcCCCC-hHHHHHHHHhhhHHHHhhhcC
Confidence 113445556666777765 57777766555 5678863
No 98
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=24.63 E-value=2.4e+02 Score=28.09 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=46.3
Q ss_pred CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc------cHHHHHHHHHhcCCCccccC
Q 020852 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC------SSESFLCCLHLSTMTPEIVG 250 (320)
Q Consensus 177 ~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~------Ta~aL~AL~~~~~~~~~~~g 250 (320)
..+....+.-.++|+.+.=.+ ..|||.|-..+.+-| +|. -|.||+|+..+.. +|
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~--------------~~gg~~~~~~~dg~~-~Dat~d~Y~haFallA~A~~a~-----a~ 132 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRD--------------PEGGWYFALDNDGGP-VDATKDLYGHAFALLAAAHAAT-----AG 132 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcC--------------CCCCeEEEecCCCCc-ccccHhHHHHHHHHHHHHHHHh-----cC
Confidence 334577888999999874332 248888876666543 443 4789999877543 23
Q ss_pred CCCCHHHHHHHHHHHHhc
Q 020852 251 EKMEPERFYDAANFMLSI 268 (320)
Q Consensus 251 ~~~~~~~i~rav~wLl~~ 268 (320)
.+.-++...++.+.|-..
T Consensus 133 ~~~a~~~~~~a~~~l~~~ 150 (388)
T COG2942 133 PPRADELLDEALDVLERR 150 (388)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 344456777777776543
No 99
>PLN02909 Endoglucanase
Probab=23.76 E-value=1.8e+02 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 020852 255 PERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 255 ~~~i~rav~wLl~~Qn~dGGW 275 (320)
.+.++-++|||+.||..+|+.
T Consensus 123 ldeikw~~D~llk~~~~~~~~ 143 (486)
T PLN02909 123 RAAIRWGTDYFLKAASRKNRL 143 (486)
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 467888999999999998865
No 100
>PLN02266 endoglucanase
Probab=22.01 E-value=2.5e+02 Score=29.08 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 020852 255 PERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 255 ~~~i~rav~wLl~~Qn~dGGW 275 (320)
.+.++-+.|||+.||.++|+.
T Consensus 133 Ldelkw~~D~llk~~~~~~~v 153 (510)
T PLN02266 133 KDAIRWATDYLLKATAHPDTI 153 (510)
T ss_pred HHHHHHHHHHHHHhccCCCeE
Confidence 377899999999999988775
No 101
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=20.97 E-value=84 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcccCCCCccccccC
Q 020852 255 PERFYDAANFMLSIQVRKQRYRAIDNL 281 (320)
Q Consensus 255 ~~~i~rav~wLl~~Qn~dGGW~afe~~ 281 (320)
.+-|+.||+|||+.-++.-||-.|+-.
T Consensus 55 teIiEnAVefiLrSMtR~tgF~E~~dk 81 (88)
T PF15144_consen 55 TEIIENAVEFILRSMTRSTGFMEFEDK 81 (88)
T ss_pred HHHHHHHHHHHHHHhhcccCceecCCC
Confidence 588999999999999999999988743
No 102
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=20.48 E-value=71 Score=31.69 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcccCCCCc
Q 020852 255 PERFYDAANFMLSIQVRKQRY 275 (320)
Q Consensus 255 ~~~i~rav~wLl~~Qn~dGGW 275 (320)
.+.++-++|||++||.++|++
T Consensus 97 lde~kwg~D~llkm~~~~~~~ 117 (444)
T PF00759_consen 97 LDEAKWGLDWLLKMQDSDGTF 117 (444)
T ss_dssp HHHHHHHHHHHHHTBSCTTEE
T ss_pred HHHHHHHHHHHHhccCCCCce
Confidence 367888999999999996654
Done!