Query 020852
Match_columns 320
No_of_seqs 196 out of 1231
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 09:07:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 5.6E-60 1.9E-64 493.0 19.8 287 1-296 229-519 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 6.6E-52 2.3E-56 426.4 20.5 284 1-313 166-460 (631)
3 2sqc_A Squalene-hopene cyclase 99.9 4.3E-22 1.5E-26 204.7 17.8 203 87-314 394-626 (631)
4 1w6k_A Lanosterol synthase; cy 99.8 1.1E-21 3.8E-26 204.6 10.1 202 89-314 479-721 (732)
5 1gxm_A Pectate lyase; mechanis 99.5 6.1E-15 2.1E-19 139.3 4.5 98 187-297 36-135 (332)
6 1r76_A Pectate lyase; A-helica 99.5 2.3E-14 8E-19 138.8 7.4 108 182-297 81-213 (408)
7 2h6f_B Protein farnesyltransfe 99.4 5.7E-13 1.9E-17 131.3 9.7 131 118-277 107-241 (437)
8 2h6f_B Protein farnesyltransfe 99.4 7.3E-13 2.5E-17 130.5 9.3 165 93-288 123-300 (437)
9 3dss_B Geranylgeranyl transfer 99.3 2.6E-12 9E-17 122.4 7.8 158 89-277 68-231 (331)
10 1qqf_A Protein (complement C3D 99.2 1.2E-10 4.2E-15 107.4 14.1 172 90-277 37-259 (277)
11 2wy7_A Complement C3D fragment 99.2 6.9E-11 2.4E-15 111.0 11.7 171 91-277 54-275 (310)
12 1hzf_A Complement factor C4A; 99.2 7.7E-11 2.6E-15 113.4 11.8 178 88-277 88-345 (367)
13 1n4q_B Geranyltransferase type 99.2 8.5E-11 2.9E-15 113.7 10.4 134 116-277 126-262 (377)
14 3dss_B Geranylgeranyl transfer 99.1 8.7E-11 3E-15 111.9 7.8 160 89-279 116-282 (331)
15 4acq_A Alpha-2-macroglobulin; 98.8 2.6E-08 9E-13 110.8 14.8 182 87-277 976-1227(1451)
16 3q7a_B Farnesyltransferase bet 98.8 2.9E-08 9.8E-13 99.0 13.2 159 88-277 62-236 (520)
17 1hzf_A Complement factor C4A; 98.7 4.7E-08 1.6E-12 93.9 10.9 124 133-268 92-226 (367)
18 1r76_A Pectate lyase; A-helica 98.7 4.6E-09 1.6E-13 101.8 3.7 146 87-277 171-335 (408)
19 1qqf_A Protein (complement C3D 98.7 3.9E-08 1.3E-12 90.5 9.4 127 133-271 39-173 (277)
20 2wy7_A Complement C3D fragment 98.7 4.9E-08 1.7E-12 91.5 9.5 126 134-271 56-189 (310)
21 1n4q_B Geranyltransferase type 98.7 4E-08 1.4E-12 95.0 8.5 94 159-278 120-213 (377)
22 3q7a_B Farnesyltransferase bet 98.7 1.4E-07 4.8E-12 94.1 12.1 138 116-277 144-316 (520)
23 2pn5_A TEP1R, thioester-contai 98.6 1E-07 3.6E-12 105.1 10.6 169 88-277 866-1087(1325)
24 2hr0_B Complement C3 alpha' ch 98.6 1.6E-07 5.3E-12 100.3 10.7 173 88-277 293-520 (915)
25 1gxm_A Pectate lyase; mechanis 98.5 4.9E-08 1.7E-12 92.3 3.3 109 160-277 72-190 (332)
26 2bb6_A TCII, TC II, transcobal 98.1 9.4E-06 3.2E-10 79.0 9.0 127 120-276 92-226 (414)
27 2pn5_A TEP1R, thioester-contai 98.1 4.5E-06 1.5E-10 92.2 7.6 123 134-276 874-1005(1325)
28 4acq_A Alpha-2-macroglobulin; 98.1 1.2E-05 4.1E-10 89.6 10.9 115 134-268 985-1108(1451)
29 2bb6_A TCII, TC II, transcobal 98.0 3.4E-05 1.2E-09 75.0 11.6 119 118-276 142-269 (414)
30 2hr0_B Complement C3 alpha' ch 97.9 2.8E-05 9.6E-10 82.9 10.5 127 133-271 300-434 (915)
31 4fxk_B Complement C4-A alpha c 97.7 0.00025 8.5E-09 74.0 13.2 67 134-205 370-439 (767)
32 3prx_B Cobra venom factor; imm 97.0 0.00012 4E-09 82.5 0.0 134 129-277 1079-1249(1642)
33 2pmv_A Gastric intrinsic facto 96.9 0.00039 1.3E-08 67.3 3.2 83 161-276 152-245 (399)
34 2b39_A C3; thioester, immune d 96.9 0.004 1.4E-07 70.3 11.3 134 129-277 1094-1267(1661)
35 3cu7_A Complement C5; Mg domai 96.8 0.0095 3.2E-07 67.3 13.7 137 128-277 1094-1286(1676)
36 2b39_A C3; thioester, immune d 96.8 0.0067 2.3E-07 68.5 12.4 123 134-268 1048-1178(1661)
37 3dra_B Geranylgeranyltransfera 96.8 0.011 3.6E-07 57.2 12.2 86 158-270 156-252 (390)
38 2pmv_A Gastric intrinsic facto 96.8 0.0043 1.5E-07 60.0 9.4 103 86-198 129-241 (399)
39 3cu7_A Complement C5; Mg domai 96.3 0.011 3.6E-07 66.9 10.2 122 134-268 1049-1178(1676)
40 3prx_B Cobra venom factor; imm 96.1 0.00099 3.4E-08 75.0 0.0 122 134-268 1032-1162(1642)
41 3dra_B Geranylgeranyltransfera 95.7 0.064 2.2E-06 51.7 11.0 126 134-277 6-140 (390)
42 4fxk_B Complement C4-A alpha c 95.5 0.053 1.8E-06 56.4 10.2 52 163-241 585-636 (767)
43 3pya_A ENT-copalyl diphosphate 95.4 0.011 3.8E-07 61.3 4.8 99 133-268 10-111 (727)
44 3s9v_A Abietadiene synthase, c 95.4 0.014 4.6E-07 61.3 5.2 101 133-268 32-135 (785)
45 3sdr_A Alpha-bisabolene syntha 95.1 0.021 7.1E-07 60.1 5.6 83 158-268 80-162 (817)
46 3p5p_A Taxadiene synthase; cla 94.9 0.02 7E-07 59.8 5.0 105 133-268 9-114 (764)
47 2ahf_A Unsaturated glucuronyl 91.1 0.81 2.8E-05 43.7 9.1 118 149-274 126-262 (377)
48 3k11_A Putative glycosyl hydro 85.6 1.9 6.5E-05 42.1 7.7 133 129-278 27-192 (445)
49 3k11_A Putative glycosyl hydro 85.6 2.4 8.3E-05 41.4 8.5 155 134-308 229-402 (445)
50 3pmm_A Putative cytoplasmic pr 84.6 1.6 5.5E-05 41.6 6.6 47 231-277 235-284 (382)
51 3s9v_A Abietadiene synthase, c 84.3 2.6 9E-05 44.1 8.5 81 109-194 51-135 (785)
52 3gt5_A N-acetylglucosamine 2-e 81.4 1.6 5.4E-05 41.5 5.1 103 159-280 49-162 (402)
53 1nc5_A Hypothetical protein YT 80.8 7.6 0.00026 36.4 9.7 127 134-273 168-322 (373)
54 2zbl_A Putative isomerase; N-a 76.9 2.6 8.8E-05 40.3 5.1 101 159-277 48-156 (421)
55 1ulv_A Glucodextranase; GH fam 75.0 6.6 0.00023 42.2 8.1 90 160-269 330-421 (1020)
56 3gt5_A N-acetylglucosamine 2-e 74.7 1.9 6.6E-05 41.0 3.5 61 134-195 77-148 (402)
57 3pya_A ENT-copalyl diphosphate 72.6 11 0.00036 39.1 8.6 80 108-194 28-111 (727)
58 1lf6_A Glucoamylase; (alpha/al 72.5 4.6 0.00016 41.3 5.9 86 161-269 342-429 (684)
59 3pmm_A Putative cytoplasmic pr 72.3 22 0.00074 33.6 10.2 125 134-275 195-339 (382)
60 3sdr_A Alpha-bisabolene syntha 71.4 13 0.00046 38.9 9.2 82 108-194 77-162 (817)
61 2gz6_A N-acetyl-D-glucosamine 69.7 2.7 9.4E-05 39.2 3.3 103 160-276 51-159 (388)
62 3p5p_A Taxadiene synthase; cla 69.6 8.2 0.00028 40.2 7.0 81 109-194 28-114 (764)
63 1fp3_A N-acyl-D-glucosamine 2- 68.7 10 0.00034 35.6 7.0 103 159-278 53-169 (402)
64 2gz6_A N-acetyl-D-glucosamine 66.0 11 0.00037 35.0 6.6 125 134-277 79-218 (388)
65 2vn4_A Glucoamylase; hydrolase 65.1 14 0.00049 37.2 7.6 106 161-272 52-173 (599)
66 2knz_A Ubiquilin-4; cytoplasm, 60.2 17 0.0006 24.3 5.0 43 132-196 9-52 (53)
67 2zzr_A Unsaturated glucuronyl 59.8 35 0.0012 32.5 9.0 116 148-274 151-287 (397)
68 2dna_A Unnamed protein product 57.6 7.5 0.00026 27.8 2.9 30 231-273 34-63 (67)
69 1wgn_A UBAP1, ubiquitin associ 54.3 7.2 0.00025 27.5 2.2 27 234-273 36-62 (63)
70 3e6u_A LANC-like protein 1; al 48.8 45 0.0015 31.6 7.8 45 231-279 233-277 (411)
71 1gai_A Glucoamylase-471; hydro 43.7 41 0.0014 32.8 6.7 97 161-269 53-169 (472)
72 3eu8_A Putative glucoamylase; 42.8 40 0.0014 32.6 6.3 79 161-243 64-147 (430)
73 1vg5_A RSGI RUH-014, rhomboid 42.3 25 0.00084 25.5 3.6 31 162-198 41-71 (73)
74 2fba_A Glucoamylase Glu1; (alp 41.9 30 0.001 34.0 5.3 73 161-240 68-156 (492)
75 1wji_A Tudor domain containing 40.8 26 0.00088 24.5 3.5 31 162-198 21-51 (63)
76 1lf6_A Glucoamylase; (alpha/al 38.8 34 0.0012 34.8 5.4 82 177-276 291-379 (684)
77 2ekk_A UBA domain from E3 ubiq 38.7 28 0.00097 22.5 3.2 26 162-194 21-46 (47)
78 2dah_A Ubiquilin-3; UBA domain 37.0 24 0.00081 23.9 2.7 29 231-272 24-52 (54)
79 1vej_A Riken cDNA 4931431F19; 35.8 26 0.0009 25.4 2.9 31 231-274 44-74 (74)
80 1nc5_A Hypothetical protein YT 35.3 2.1E+02 0.0072 26.3 10.0 47 231-277 215-263 (373)
81 3nnb_A Alginate lyase; structu 35.1 16 0.00056 34.8 2.1 109 159-281 219-334 (382)
82 2cpw_A CBL-interacting protein 34.4 30 0.001 24.2 2.9 16 257-272 47-62 (64)
83 1veg_A NEDD8 ultimate buster-1 34.3 31 0.0011 25.6 3.2 29 162-196 41-69 (83)
84 1wiv_A UBP14, ubiquitin-specif 33.2 45 0.0015 23.9 3.8 30 162-197 41-70 (73)
85 2crn_A Ubash3A protein; compac 32.8 70 0.0024 22.2 4.7 31 162-197 21-51 (64)
86 2zbl_A Putative isomerase; N-a 30.2 87 0.003 29.4 6.4 61 133-194 74-145 (421)
87 1ify_A HHR23A, UV excision rep 29.2 93 0.0032 20.3 4.6 27 162-194 20-46 (49)
88 3k7x_A LIN0763 protein; Q92DQ0 28.9 44 0.0015 31.0 4.0 128 132-280 65-196 (349)
89 2dhy_A CUE domain-containing p 28.1 28 0.00095 24.8 1.9 18 257-274 47-64 (67)
90 4gl3_A Putative glucoamylase; 28.1 1.1E+02 0.0036 29.5 6.6 81 161-243 54-139 (424)
91 2bwb_A Ubiquitin-like protein 27.8 47 0.0016 21.5 2.9 26 162-193 20-45 (46)
92 1whc_A RSGI RUH-027, UBA/UBX 3 27.4 50 0.0017 22.9 3.2 31 162-197 21-51 (64)
93 1wr1_B Ubiquitin-like protein 26.8 54 0.0019 22.5 3.1 40 134-194 17-56 (58)
94 2g3q_A Protein YBL047C; endocy 26.7 56 0.0019 20.5 3.0 26 162-193 16-41 (43)
95 2jy5_A Ubiquilin-1; UBA, alter 26.1 51 0.0018 21.9 2.9 26 163-194 26-51 (52)
96 1ulv_A Glucodextranase; GH fam 25.9 46 0.0016 35.7 3.9 42 230-282 333-376 (1020)
97 2dkl_A Trinucleotide repeat co 25.6 1.5E+02 0.005 21.9 5.6 30 162-197 33-62 (85)
98 3qry_B Putative uncharacterize 25.2 1.1E+02 0.0038 29.5 6.0 70 118-196 305-386 (426)
99 2vn4_A Glucoamylase; hydrolase 22.5 59 0.002 32.6 3.8 36 230-276 54-99 (599)
100 2dak_A Ubiquitin carboxyl-term 22.3 48 0.0016 22.8 2.2 30 162-197 21-50 (63)
101 2dag_A Ubiquitin carboxyl-term 21.9 72 0.0025 22.9 3.2 31 162-197 21-51 (74)
102 2dai_A Ubadc1, ubiquitin assoc 21.6 79 0.0027 23.2 3.4 30 162-197 41-70 (83)
103 3p2c_A Putative glycosyl hydro 21.1 1.4E+02 0.0047 29.1 5.9 69 119-196 334-414 (463)
104 4fnv_A Heparinase III protein, 20.3 2.6E+02 0.0089 28.5 8.1 170 89-278 180-373 (702)
105 3qt9_A Putative uncharacterize 20.2 1.5E+02 0.005 28.6 5.8 69 119-196 306-386 (427)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=5.6e-60 Score=493.03 Aligned_cols=287 Identities=34% Similarity=0.667 Sum_probs=261.3
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||||+|||||+||+++||++|.+|++.+||+|||++||++|+|.++|+.|+++|+|+|+++++..++..+ +.+|+++
T Consensus 229 ~~~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~ 307 (732)
T 1w6k_A 229 LWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH 307 (732)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC
T ss_pred HHHHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC
Confidence 799999999999999999999998899899999999999999999999999999999999999988888777 6777765
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccC-CCcHHHHHHHHHHhhhhhhcCCCceeccC-C
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVED-PNSDYFKKHLARITEYFWVGEDGLRVQSF-G 158 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~~dG~~~q~~-~ 158 (320)
++++|++|++++++||..+|++++|+||+|+|++++||+++..+ |+||.+++|+++|++|+|+.+||+++|+| +
T Consensus 308 ----~~~lr~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~g 383 (732)
T 1w6k_A 308 ----SAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNG 383 (732)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSC
T ss_pred ----cHHHHHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCC
Confidence 37899999999999999999999999999999999999988644 99999999999999999999999999999 7
Q ss_pred ChhhHHHHHHHHHHHcCCCC--CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 159 SQTWDCALAVQALLACNLTD--EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~--~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
|++|||+|+++||.++|++. ++++.++||++||+++|+.++ +|||...+|+.++|||+|++.+++|||+||||+||+
T Consensus 384 s~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~ 462 (732)
T 1w6k_A 384 SQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALK 462 (732)
T ss_dssp CHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHH
Confidence 99999999999999999865 467899999999999999764 578988999999999999999999999999999999
Q ss_pred HHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccc
Q 020852 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKN 296 (320)
Q Consensus 237 AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~ 296 (320)
||..+...+.+ .|..+..+++++|++||+++||+||||++|+.++ ..-+++++|+.+
T Consensus 463 aL~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~--~~~~l~~i~~~e 519 (732)
T 1w6k_A 463 AVLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKR--GGHLLELLNPSE 519 (732)
T ss_dssp HHHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCC--SCGGGGGGCCCS
T ss_pred HHHHHhccccc-ccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCC--chHHHhhCcchh
Confidence 99987642210 2345678999999999999999999999999988 788899999665
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=6.6e-52 Score=426.45 Aligned_cols=284 Identities=18% Similarity=0.162 Sum_probs=239.5
Q ss_pred CceeehhhHHHHHHHhcCCCCccCCchhhhhhhhhcCCCCCCCCccccccccCCcCCCCCCchhHHHHHHHHHHhHhhcc
Q 020852 1 MFCYCRLTYMPMSYLYGKRFVGPITPLILQLREEIYTQPYNEINWSKLRHYCAKEDVFFPHTPVQNLLWDTLYYVVEPIF 80 (320)
Q Consensus 1 ~~~~~R~v~vPm~~l~~~r~~~~~~p~~~~Lr~ELy~~p~~~i~w~~~r~~~~~~d~~~p~~~~~~~~~~~l~~~~~~~~ 80 (320)
||||+|+|||||+||++|||++|+|+++ +| +|||++||++|+|.. +.|++.+...+...+ +.+++
T Consensus 166 ~~~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~l-~~~~~-- 230 (631)
T 2sqc_A 166 FGSWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDALDRAL-HGYQK-- 230 (631)
T ss_dssp SCHHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHHHHHH-HHHHH--
T ss_pred hHHHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHHHHHH-HHhhc--
Confidence 6999999999999999999999988886 79 999999999999852 456666555554333 44444
Q ss_pred cCCCchHHHHHHHHHHHHHHHhhcCCCCc---cccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCC-Cceecc
Q 020852 81 NRWPFKKLRDKSLKVAMKHINYEDEASRY---ITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGED-GLRVQS 156 (320)
Q Consensus 81 ~~~~~~~lr~~Al~~~~~~i~~~~~~t~~---~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~d-G~~~q~ 156 (320)
++++++|++|++++++||..+++++++ |+++++|+++++ .+.+++ +||.+++|+++|++|+|+.+| |+++|+
T Consensus 231 --~~~~~lr~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l-~~~g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~ 306 (631)
T 2sqc_A 231 --LSVHPFRRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIAL-KILDMT-QHPAFIKGWEGLELYGVELDYGGWMFQA 306 (631)
T ss_dssp --SSCCTTHHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHH-HHTTCT-TSHHHHHHHHGGGGGEEECTTSCEEECS
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHH-HHcCCC-CCHHHHHHHHHHHhceEEcCCCceeeCC
Confidence 345679999999999999999999986 334557777654 444555 999999999999999999888 899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 157 FGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 157 ~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
|+|++|||+++++||.++|.+.+ ++.++||++||++.|+.+ +|||..++++.++|||+||+.|++|||+||||+|++
T Consensus 307 ~~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~ 383 (631)
T 2sqc_A 307 SISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVW 383 (631)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHH
Confidence 99999999999999999999876 899999999999999954 499999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeeccccccccCCCCCC-------chhhhc
Q 020852 237 CCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNLGMSKIP-------MGTGTL 309 (320)
Q Consensus 237 AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~~~~~~p-------~~~~~l 309 (320)
||..++. +. .....+++++|++||+++|++||||++|+..+ ...+++.+||.|+++..+| ..+.||
T Consensus 384 AL~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~--~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL 456 (631)
T 2sqc_A 384 ALNTLRL-PD----ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDN--TSDLPNHIPFSDFGEVTDPPSEDVTAHVLECF 456 (631)
T ss_dssp HHTTCCC-SC----HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSC--CCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHH
T ss_pred HHHHcCC-Cc----cchhHHHHHHHHHHHHhhcCCCCCCCccCCCC--ccccccccccccCCcccCCCCchHHHHHHHHH
Confidence 9987763 11 11246789999999999999999999999987 7889999999999877664 235666
Q ss_pred cccc
Q 020852 310 GDFP 313 (320)
Q Consensus 310 ~~~~ 313 (320)
.++.
T Consensus 457 ~~~g 460 (631)
T 2sqc_A 457 GSFG 460 (631)
T ss_dssp HTTT
T ss_pred HhcC
Confidence 6653
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.88 E-value=4.3e-22 Score=204.71 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-ccccc----------------------c----chHHhhcccccccCCCcHHHHHHHH
Q 020852 87 KLRDKSLKVAMKHINYEDEASR-YITIG----------------------C----VEKPLNMLSCWVEDPNSDYFKKHLA 139 (320)
Q Consensus 87 ~lr~~Al~~~~~~i~~~~~~t~-~~~~~----------------------p----v~~~l~~L~~~~~~pd~~~v~~~l~ 139 (320)
...+.+++++.+||...|..+| |.... | ...++.+|...+.+..++.++++++
T Consensus 394 ~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~ 473 (631)
T 2sqc_A 394 RRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVE 473 (631)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 4556788888999888775544 21110 1 1135666666665556788999999
Q ss_pred HHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccc
Q 020852 140 RITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTF 218 (320)
Q Consensus 140 ~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~F 218 (320)
.|.+. +.+||.|.+.+ .+.+|.|++++.+|..+|.+.. ++.++||++||+++|..| |+|++.+.......|
T Consensus 474 ~L~~~--Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~~-~~~i~rav~~L~s~Q~~D---GgWg~~~~sy~~~~~-- 545 (631)
T 2sqc_A 474 YLKRE--QKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTR-EPYIQKALDWVEQHQNPD---GGWGEDCRSYEDPAY-- 545 (631)
T ss_dssp HHHHH--CCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCTT-SHHHHHHHHHHHHTCCTT---SCCCCCGGGGTCGGG--
T ss_pred HHHHh--cCCCCCCCCCCCCCchHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhCcCC---CCcCCcccccccccc--
Confidence 88876 57899998777 6789999999999999998654 789999999999999986 788654322111111
Q ss_pred cCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccccc--CCCCcceeeccccccc
Q 020852 219 SNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDN--LIIFKACIFNDIGWKN 296 (320)
Q Consensus 219 s~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~--~~~~~~~~l~~~~f~~ 296 (320)
...+-+++..|++||+||+.++. . +.+.++++++||+++||+||||+.-.. .+||+.|||+|+.|++
T Consensus 546 --~~~~~s~v~~Ta~ALlaL~~ag~--------~-~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~ 614 (631)
T 2sqc_A 546 --AGKGASTPSQTAWALMALIAGGR--------A-ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRH 614 (631)
T ss_dssp --TTCSSCCHHHHHHHHHHHHHTTC--------S-SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHH
T ss_pred --CCCCCCCHHHHHHHHHHHHHcCC--------C-ChHHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhh
Confidence 01122466679999999998763 1 357899999999999999999986333 2389999999999999
Q ss_pred cCCCCCCchhhhcccccC
Q 020852 297 LGMSKIPMGTGTLGDFPH 314 (320)
Q Consensus 297 ~~~~~~p~~~~~l~~~~~ 314 (320)
+ || |+|||+|+.
T Consensus 615 ~----f~--l~AL~~y~~ 626 (631)
T 2sqc_A 615 V----FP--TLALGRYKQ 626 (631)
T ss_dssp H----HH--HHHHHHHHH
T ss_pred H----HH--HHHHHHHHH
Confidence 9 99 999999963
No 4
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.85 E-value=1.1e-21 Score=204.60 Aligned_cols=202 Identities=15% Similarity=0.189 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC-cccc-----------------------cc-----chHHhhccccccc-CCC------cH
Q 020852 89 RDKSLKVAMKHINYEDEASR-YITI-----------------------GC-----VEKPLNMLSCWVE-DPN------SD 132 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~-~~~~-----------------------~p-----v~~~l~~L~~~~~-~pd------~~ 132 (320)
.+.+++++.+||...|..+| |... .+ ...+|.+|...+. .|+ ++
T Consensus 479 ~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~ 558 (732)
T 1w6k_A 479 PRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRE 558 (732)
T ss_dssp CHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHH
Confidence 45677888888888775555 2100 00 0134555555442 122 46
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCcc---HHHHHHHHHHHhcccCCCCCCCccccc
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIG---PILMKAHDFLKNSQVTDNPQGDFRSMF 208 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~---~~l~kA~~wL~~~Q~~~~~~Gdw~~~~ 208 (320)
.++++++.|.+- +.+||.|...+ .+.+|.|++++.||..+|...... +.++||++||+++|..| |+|++.+
T Consensus 559 ~i~rAv~yL~~~--Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~D---GGWge~~ 633 (732)
T 1w6k_A 559 TLTQGLEFCRRQ--QRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMAD---GGWGEDF 633 (732)
T ss_dssp HHHHHHHHHHHH--SCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTT---SCCCBCT
T ss_pred HHHHHHHHHHhh--cCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccC---CCCCCCC
Confidence 788888877765 46899998877 589999999999999999865423 79999999999999986 7887643
Q ss_pred CCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCC-CCcce
Q 020852 209 RHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLI-IFKAC 287 (320)
Q Consensus 209 ~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~-~~~~~ 287 (320)
.......| . ...-+++..||+||+||+.++. .+.+.++++++||+++|++||||..-...+ |++.|
T Consensus 634 ~s~~~~~y--~--~~~~s~v~~TAwALlALl~ag~---------~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~ 700 (732)
T 1w6k_A 634 ESCEERRY--V--QSAQSQIHNTCWAMMGLMAVRH---------PDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSC 700 (732)
T ss_dssp HHHHHTSC--C--BCSSCCHHHHHHHHHHHHHTTC---------SCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTE
T ss_pred cccccccc--C--CCCCCCHHHHHHHHHHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccCCcccccccchh
Confidence 21111111 1 1223577889999999988753 257899999999999999999998643333 89999
Q ss_pred eeccccccccCCCCCCchhhhcccccC
Q 020852 288 IFNDIGWKNLGMSKIPMGTGTLGDFPH 314 (320)
Q Consensus 288 ~l~~~~f~~~~~~~~p~~~~~l~~~~~ 314 (320)
||+|+.|+++ || |+|||+|+.
T Consensus 701 ~i~Y~~y~~~----fp--l~AL~~y~~ 721 (732)
T 1w6k_A 701 AISYTSYRNI----FP--IWALGRFSQ 721 (732)
T ss_dssp EECCTTHHHH----HH--HHHHHHHHH
T ss_pred hhcccchhHH----HH--HHHHHHHHH
Confidence 9999999999 99 999999963
No 5
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.51 E-value=6.1e-15 Score=139.31 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=75.7
Q ss_pred HHHHHHhcccCCCCCCCcccc--cCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHH
Q 020852 187 AHDFLKNSQVTDNPQGDFRSM--FRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANF 264 (320)
Q Consensus 187 A~~wL~~~Q~~~~~~Gdw~~~--~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~w 264 (320)
..+-|+.-|... |+|.+. +.....++ ...+.++||.|+|+.+|++|..+.... +.+...+++.||++|
T Consensus 36 ~Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~---~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~w 105 (332)
T 1gxm_A 36 RADVVLSYQQNN---GGWPKNLDYNSVGNGG---GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANF 105 (332)
T ss_dssp GHHHHHHTCCTT---SCCCSCCCTTTCCCCC---CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCC---CCCCcceecccccccC---CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHH
Confidence 378899999986 899764 22221111 123567899999999999998875311 123457999999999
Q ss_pred HHhcccCCCCccccccCCCCcceeecccccccc
Q 020852 265 MLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL 297 (320)
Q Consensus 265 Ll~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~ 297 (320)
||+||++||||++|++++ ..|+|+|||+|-
T Consensus 106 lL~mQ~~nGGWpqFdpd~---~~Yl~~IpFnDD 135 (332)
T 1gxm_A 106 LVNSQYSTGALPQFYPLK---GGYSDHATFNDN 135 (332)
T ss_dssp HHHHCCTTSCCBSEESCC---SGGGGSEECGGG
T ss_pred HHhccCCCCCccccCCCc---ccccccCCcchH
Confidence 999999999999999996 789999999993
No 6
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.49 E-value=2.3e-14 Score=138.78 Aligned_cols=108 Identities=8% Similarity=0.018 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcccCCCCCCCcccccC--CC------------------CCCccc-c---cCCCCCCCCCcccHHHHHH
Q 020852 182 PILMKAHDFLKNSQVTDNPQGDFRSMFR--HI------------------SKGGWT-F---SNKDHGWPVSDCSSESFLC 237 (320)
Q Consensus 182 ~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~--~~------------------~~GGW~-F---s~~~~~~Pd~D~Ta~aL~A 237 (320)
+..+++.+.|+.-|... |+|..... .. .+|.|. . ...+.+++|.|+|+.++++
T Consensus 81 ~~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~a 157 (408)
T 1r76_A 81 KAARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRF 157 (408)
T ss_dssp HHHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHH
Confidence 45688999999999986 89976321 11 112221 0 1136788999999999999
Q ss_pred HHHhcCC-CccccCCCCCHHHHHHHHHHHHhcccCCCCccccccCCCCcceeecccccccc
Q 020852 238 CLHLSTM-TPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAIDNLIIFKACIFNDIGWKNL 297 (320)
Q Consensus 238 L~~~~~~-~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe~~~~~~~~~l~~~~f~~~ 297 (320)
|..+... . ..+.+...+++.||++|||+||++||||++|+++| ..|+|+|||+|-
T Consensus 158 L~rv~~~~t--~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn---~~y~~~IpFnDD 213 (408)
T 1r76_A 158 LAQVVSQLA--PEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLE---GGYHDAITYNDD 213 (408)
T ss_dssp HHHHHHHSC--GGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCC---CGGGGSEECGGG
T ss_pred HHHHHhhcc--ccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccc---cccccCCCcCcH
Confidence 9887531 1 00123457999999999999999999999999998 589999999993
No 7
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.40 E-value=5.7e-13 Score=131.30 Aligned_cols=131 Identities=13% Similarity=-0.076 Sum_probs=96.5
Q ss_pred HhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceec-cC-CChhhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHh
Q 020852 118 PLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQ-SF-GSQTWDCALAVQALLACNLT--DEIGPILMKAHDFLKN 193 (320)
Q Consensus 118 ~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q-~~-~s~vWdTa~a~~AL~~aG~~--~~~~~~l~kA~~wL~~ 193 (320)
++++|...+...+.+.++++++.|... +.+||.|.. .+ .+.+..|..|+++|...|.. .+ ...++||++||++
T Consensus 107 ~l~aL~lLg~~~~~~~~~r~v~~l~s~--Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~-~i~i~kav~~L~s 183 (437)
T 2h6f_B 107 ILHSLELLDEPIPQIVATDVCQFLELC--QSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYD-IINREKLLQYLYS 183 (437)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHH--BCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHT-TSCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHh--CCCCCCcCCccCCCcchhHHHHHHHHHHHhCCccccc-chHHHHHHHHHHH
Confidence 455566666555667788999988876 568898876 45 67899999999999999864 11 2458999999999
Q ss_pred cccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 020852 194 SQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ 273 (320)
Q Consensus 194 ~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG 273 (320)
.|..| |+|... .|+ ..|+--|-.|+.+|.+++. .+.+.++++++||+++||.||
T Consensus 184 ~Q~~D---Gsf~~~-------~~G-------e~d~~~ty~A~~~L~llg~---------~~~~~v~k~~~~L~s~Q~~DG 237 (437)
T 2h6f_B 184 LKQPD---GSFLMH-------VGG-------EVDVRSAYCAASVASLTNI---------ITPDLFEGTAEWIARCQNWEG 237 (437)
T ss_dssp TBCTT---SCBBSS-------TTC-------CBSHHHHHHHHHHHHHTTC---------CCTTTTTTHHHHHHHHBCTTS
T ss_pred hCCCC---CCeeec-------CCC-------CccchhHHHHHHHHHHhCC---------CChHHHHHHHHHHHHccCCCC
Confidence 99986 666521 122 2344446667767766552 234668899999999999999
Q ss_pred Cccc
Q 020852 274 RYRA 277 (320)
Q Consensus 274 GW~a 277 (320)
||+.
T Consensus 238 Gwg~ 241 (437)
T 2h6f_B 238 GIGG 241 (437)
T ss_dssp SBCS
T ss_pred CcCC
Confidence 9986
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.38 E-value=7.3e-13 Score=130.50 Aligned_cols=165 Identities=8% Similarity=0.022 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhcCCCC-ccc-------cccchHHhhcccccccC--CCcHHHHHHHHHHhhhhhhcCCCceecc-C-CCh
Q 020852 93 LKVAMKHINYEDEASR-YIT-------IGCVEKPLNMLSCWVED--PNSDYFKKHLARITEYFWVGEDGLRVQS-F-GSQ 160 (320)
Q Consensus 93 l~~~~~~i~~~~~~t~-~~~-------~~pv~~~l~~L~~~~~~--pd~~~v~~~l~~l~~~l~~~~dG~~~q~-~-~s~ 160 (320)
++++.+||...|+.+| |.+ +.....+|.+|...+.+ .+.+.++++++.|.+- +.+||.|... + .+.
T Consensus 123 ~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~--Q~~DGsf~~~~~Ge~d 200 (437)
T 2h6f_B 123 ATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSL--KQPDGSFLMHVGGEVD 200 (437)
T ss_dssp HHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTT--BCTTSCBBSSTTCCBS
T ss_pred HHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh--CCCCCCeeecCCCCcc
Confidence 4455666666664444 222 11134577777776643 2334588999988875 5789998864 4 467
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLH 240 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~ 240 (320)
+..|..|+.+|...|... .+.++|+++||+++|..| |+|++. .. .-+++-.|++||.||..
T Consensus 201 ~~~ty~A~~~L~llg~~~--~~~v~k~~~~L~s~Q~~D---GGwg~~------------pg--~eSh~~~T~~Al~aL~~ 261 (437)
T 2h6f_B 201 VRSAYCAASVASLTNIIT--PDLFEGTAEWIARCQNWE---GGIGGV------------PG--MEAHGGYTFCGLAALVI 261 (437)
T ss_dssp HHHHHHHHHHHHHTTCCC--TTTTTTHHHHHHHHBCTT---SSBCSS------------TT--SCCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCCC---CCcCCC------------CC--CCCCccHHHHHHHHHHH
Confidence 888888888888888753 467999999999999986 666532 11 12455679999999998
Q ss_pred hcCCCccccCCCCCHHHHHHHHHHHHhccc-CCCCccccccCCCCccee
Q 020852 241 LSTMTPEIVGEKMEPERFYDAANFMLSIQV-RKQRYRAIDNLIIFKACI 288 (320)
Q Consensus 241 ~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn-~dGGW~afe~~~~~~~~~ 288 (320)
++.. +...++++++||+++|. .+|||.- -++...+.||
T Consensus 262 lg~~---------~~~~~~rl~~wL~~rQ~~~~GGf~g-Rp~K~~D~cY 300 (437)
T 2h6f_B 262 LKRE---------RSLNLKSLLQWVTSRQMRFEGGFQG-RCNKLVDGCY 300 (437)
T ss_dssp HTCG---------GGSCHHHHHHHHHHTBCTTTCSBBS-STTSCBCTTH
T ss_pred cCCC---------CcccHHHHHHHHHhcCCCCCCCccC-CCCCccchHH
Confidence 8742 22358899999999999 8899965 2222334555
No 9
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.30 E-value=2.6e-12 Score=122.35 Aligned_cols=158 Identities=14% Similarity=0.001 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCccc----cccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceecc-C-CChhh
Q 020852 89 RDKSLKVAMKHINYEDEASRYIT----IGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQS-F-GSQTW 162 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~~~~----~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~-~-~s~vW 162 (320)
|+++++++...+..+++..+..+ +...+.++..|...+. .+...++++++.|.+. +.+||.|... + .+++.
T Consensus 68 r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~-~~~id~~k~~~fL~~~--Q~~DGsf~~~~~ge~d~~ 144 (331)
T 3dss_B 68 KEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDS-IHVINVDKVVAYVQSL--QKEDGSFAGDIWGEIDTR 144 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHHT--BCTTSCBBSSTTCCBCHH
T ss_pred HHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCC-ccHHHHHHHHHHHhcc--CCCCCCEecccCCCCchH
Confidence 66666666555433332222111 1123445555555431 1222378899888875 5789988865 4 46788
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhc
Q 020852 163 DCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLS 242 (320)
Q Consensus 163 dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~ 242 (320)
-|..|+.+|...|..+ .+.++|+++||+++|..| |+|+.. . ..-++.-.|.+|+.||..++
T Consensus 145 ~ty~Al~~L~llg~~~--~~~~~k~v~~L~s~Q~~d---GGfg~~------------p--g~esh~~~T~~al~aL~llg 205 (331)
T 3dss_B 145 FSFCAVATLALLGKLD--AINVEKAIEFVLSCMNFD---GGFGCR------------P--GSESHAGQIYCCTGFLAITS 205 (331)
T ss_dssp HHHHHHHHHHHHTCGG--GSCHHHHHHHHHTTBCTT---SCBCSS------------T--TCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCcCC---CCcCCC------------C--CCCCcHHHHHHHHHHHHhcc
Confidence 8888999998888753 456999999999999976 666522 1 11244556999999998876
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 243 TMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 243 ~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.. +...++++++||+++|++||||..
T Consensus 206 ~~---------~~~~~~~~~~wL~~~Q~~dGGf~g 231 (331)
T 3dss_B 206 QL---------HQVNSDLLGWWLCERQLPSGGLNG 231 (331)
T ss_dssp CG---------GGSCHHHHHHHHHTTBCTTSCBCS
T ss_pred cc---------chhhHHHHHHHHHHhCCCCCCcCC
Confidence 42 123378999999999999999975
No 10
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.22 E-value=1.2e-10 Score=107.43 Aligned_cols=172 Identities=11% Similarity=0.031 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccc---chH-----Hhhccccccc--CCCcHHHHHHHHHHhh-hhhhcCCCceeccCC
Q 020852 90 DKSLKVAMKHINYEDEASRYITIGC---VEK-----PLNMLSCWVE--DPNSDYFKKHLARITE-YFWVGEDGLRVQSFG 158 (320)
Q Consensus 90 ~~Al~~~~~~i~~~~~~t~~~~~~p---v~~-----~l~~L~~~~~--~pd~~~v~~~l~~l~~-~l~~~~dG~~~q~~~ 158 (320)
.+.++..++|+...+..+|..+..+ -+. ++.+|+.... ..+.+.+++++++|.. . +.+||+|...+.
T Consensus 37 ~~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~--Q~~dG~f~~~~~ 114 (277)
T 1qqf_A 37 LELIKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEK--QKPDGVFQEDGP 114 (277)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHH--BCTTSCBCCSSC
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--cCCCCCccCCcc
Confidence 3445667888888876665223222 111 3333333321 3566789999998884 5 468898765441
Q ss_pred ---------------ChhhHHHHHHHHHHHc------CCCCCccHHHHHHHHHHHhcccCCCC-------------CCCc
Q 020852 159 ---------------SQTWDCALAVQALLAC------NLTDEIGPILMKAHDFLKNSQVTDNP-------------QGDF 204 (320)
Q Consensus 159 ---------------s~vWdTa~a~~AL~~a------G~~~~~~~~l~kA~~wL~~~Q~~~~~-------------~Gdw 204 (320)
+.+.-|++++.||.++ |++.. ++.|+||++||+++|..... .|+.
T Consensus 115 ~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~-~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~ 193 (277)
T 1qqf_A 115 VIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSL-PGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKL 193 (277)
T ss_dssp CSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTH-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCch-HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCCh
Confidence 1355699999999998 55443 78999999999998764110 0111
Q ss_pred ccc----c-CCCCCC-cccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 205 RSM----F-RHISKG-GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 205 ~~~----~-~~~~~G-GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.+. . .....| -|... .....++..||+||+||+.+.. .+.+.++++||++.||++|||.+
T Consensus 194 ~~~~l~~l~~~~~~~~~w~~~--~~~~~~ve~Ta~aLlal~~~~~-----------~~~~~~~v~wL~~qq~~~Ggw~s 259 (277)
T 1qqf_A 194 EEPYLTKFLNTAKDRNRWEEP--GQQLYNVEATSYALLALLLLKD-----------FDSVPPVVRWLNDERYYGGGYGS 259 (277)
T ss_dssp CTTHHHHHHHHSBTTTBCCCT--TCHHHHHHHHHHHHHHHHHTTC-----------TTSHHHHHHHHHHCCCCTTSTTC
T ss_pred HHHHHHHHHHhccCCCCCCCC--CCccchhHHHHHHHHHHHhcCC-----------hhhHHHHHHHHHHccCCCCCeec
Confidence 000 0 000022 23211 0000145679999999988652 24578899999999999999986
No 11
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.21 E-value=6.9e-11 Score=110.97 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhcCCCCcccccc---chH-----Hhhccccccc--CCCcHHHHHHHHHHhh-hhhhcCCCceeccCC-
Q 020852 91 KSLKVAMKHINYEDEASRYITIGC---VEK-----PLNMLSCWVE--DPNSDYFKKHLARITE-YFWVGEDGLRVQSFG- 158 (320)
Q Consensus 91 ~Al~~~~~~i~~~~~~t~~~~~~p---v~~-----~l~~L~~~~~--~pd~~~v~~~l~~l~~-~l~~~~dG~~~q~~~- 158 (320)
+.++..++|+...+..+|..+..+ -+. ++.+|+.... ..+.+.+++++++|.. . +.+||+|...+.
T Consensus 54 ~~i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~--Q~~dGsf~~~~~~ 131 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEK--QKPDGVFQEDAPV 131 (310)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHH--BCTTSCBCCSSCC
T ss_pred HHHHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh--cCCCCccccCCCc
Confidence 445557888888886665223222 111 2333333321 3566789999998884 5 578898765541
Q ss_pred --------------ChhhHHHHHHHHHHHc------CCCCCccHHHHHHHHHHHhcccCCCC-------------CCCcc
Q 020852 159 --------------SQTWDCALAVQALLAC------NLTDEIGPILMKAHDFLKNSQVTDNP-------------QGDFR 205 (320)
Q Consensus 159 --------------s~vWdTa~a~~AL~~a------G~~~~~~~~l~kA~~wL~~~Q~~~~~-------------~Gdw~ 205 (320)
+.+.-|++++.||.++ |++.. ++.|+||++||.++|..... .|++.
T Consensus 132 ~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~-~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~ 210 (310)
T 2wy7_A 132 IHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSL-PGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLK 210 (310)
T ss_dssp SCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTH-HHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCC
T ss_pred cCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcch-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcH
Confidence 2355699999999998 55443 78999999999998864110 13332
Q ss_pred ccc----CC-CCCC-cccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 206 SMF----RH-ISKG-GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 206 ~~~----~~-~~~G-GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
+.. .. ...| -|.-.. ....++..||+||+||+.+.. .+.+.++++||++.||++|||.+
T Consensus 211 ~~~l~~l~~~~~~~~~w~~~~--~~~~~ve~Ta~aLlal~~~~~-----------~~~~~~~v~wL~~qq~~~Ggw~s 275 (310)
T 2wy7_A 211 GPLLNKFLTTAKDKNRWEDPG--KQLYNVEATSYALLALLQLKD-----------FDFVPPVVRWLNEQRYYGGGYGS 275 (310)
T ss_dssp HHHHHHHHHHSBTTTBCCCSS--CHHHHHHHHHHHHHHHHHHTC-----------TTTHHHHHHHHHHTTCCCCSTTC
T ss_pred HHHHHHHHHhccCCCCCCCCC--CcccchHHHHHHHHHHHhcCC-----------hhhHHHHHHHHHHccCCCCCeec
Confidence 110 00 0122 232110 000145679999999998752 24588899999999999999976
No 12
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.20 E-value=7.7e-11 Score=113.43 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccccc---h-----HHhhcccccc--cCCCcHHHHHHHHHHhhhhhhcCCCceeccC
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIGCV---E-----KPLNMLSCWV--EDPNSDYFKKHLARITEYFWVGEDGLRVQSF 157 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~pv---~-----~~l~~L~~~~--~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~ 157 (320)
-.++.++++++||...|..+|..+.... + -++.+|.... +..+++.+++++++|.+. +.+||.|...+
T Consensus 88 ~~~~~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~--Q~~dG~~~~~~ 165 (367)
T 1hzf_A 88 HAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQ--QQADGSFQDPC 165 (367)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGG--BCTTSCBCCSS
T ss_pred HHHHHHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--hccCCCccccc
Confidence 3556788899999988877662232221 1 2344444433 345678899999999875 57888876543
Q ss_pred C--------------ChhhHHHHHHHHHHHcCCC--C--------CccHHHHHHHHHHHhc--ccCCCC-----------
Q 020852 158 G--------------SQTWDCALAVQALLACNLT--D--------EIGPILMKAHDFLKNS--QVTDNP----------- 200 (320)
Q Consensus 158 ~--------------s~vWdTa~a~~AL~~aG~~--~--------~~~~~l~kA~~wL~~~--Q~~~~~----------- 200 (320)
. +.+.-|++++.||.++|.. + ..++.|+||++||.++ |...++
T Consensus 166 ~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~ 245 (367)
T 1hzf_A 166 PVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALT 245 (367)
T ss_dssp CCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHH
Confidence 1 3477899999999998742 1 1356899999999876 321000
Q ss_pred -CCCccc----------ccCCCCCCc--ccccCC---------------CCCCC-----CCcccHHHHHHHHHhcCCCcc
Q 020852 201 -QGDFRS----------MFRHISKGG--WTFSNK---------------DHGWP-----VSDCSSESFLCCLHLSTMTPE 247 (320)
Q Consensus 201 -~Gdw~~----------~~~~~~~GG--W~Fs~~---------------~~~~P-----d~D~Ta~aL~AL~~~~~~~~~ 247 (320)
.|+... ..-....++ |.-... ...|+ ++..||.||+||++...
T Consensus 246 l~~~~~~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~---- 321 (367)
T 1hzf_A 246 LTKAPADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG---- 321 (367)
T ss_dssp HTTCCHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC----
T ss_pred hcCCcHHHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC----
Confidence 011100 000001111 332100 00111 56789999999987642
Q ss_pred ccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 248 IVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 248 ~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
+.+.+.+.|+||++.||.+|||++
T Consensus 322 ------~~~~~~~iv~WL~~qrn~~Ggw~s 345 (367)
T 1hzf_A 322 ------KAEMADQASAWLTRQGSFQGGFRS 345 (367)
T ss_dssp ------SSHHHHHHHHHHHHHTTSTTCSCS
T ss_pred ------chhhhHHHHHHHHhCcCCCCCccc
Confidence 247789999999999999999986
No 13
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.16 E-value=8.5e-11 Score=113.73 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=93.7
Q ss_pred hHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceec--cC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Q 020852 116 EKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQ--SF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLK 192 (320)
Q Consensus 116 ~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q--~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~ 192 (320)
..++.+|..++.+.+....+++++.|.+. +++||+|.. .+ ...++-|-.|+.++...|.. + .+.++||++||+
T Consensus 126 ~~Al~~L~~lg~~~~~id~~~~~~fL~~~--Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~-~-~~~v~ka~~fL~ 201 (377)
T 1n4q_B 126 YTGLSCLIILGDDLSRVDKEACLAGLRAL--QLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW-S-GMDMKKAISYIR 201 (377)
T ss_dssp HHHHHHHHHTTCCSTTSCHHHHHHHHHHH--BCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG-G-GSCHHHHHHHHH
T ss_pred HHHHHHHHHhCcccchhhHHHHHHHHHHh--cCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC-C-hHHHHHHHHHHH
Confidence 44666777766443333467888877765 579999987 36 47788998898888888873 2 567999999999
Q ss_pred hcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCC
Q 020852 193 NSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRK 272 (320)
Q Consensus 193 ~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~d 272 (320)
++|..| |+|++.. | .. +....|..|+.+|..+...+. ..+...++++++||+..| +
T Consensus 202 scQn~D---GGfGe~p-----~-------~E--Sh~g~T~cAlaaL~llg~~~~-----~~~~~~~~rli~wL~~rQ--~ 257 (377)
T 1n4q_B 202 RSMSYD---NGLAQGA-----G-------LE--SHGGSTFCGIASLCLMGKLEE-----VFSEKELNRIKRWCIMRQ--Q 257 (377)
T ss_dssp HTBCTT---SSBBSST-----T-------SC--BCHHHHHHHHHHHHHHTCHHH-----HSCHHHHHHHHHHHHTTB--S
T ss_pred HhcCCC---CCCCCCC-----C-------CC--CchhHHHHHHHHHHHhcCccc-----ccchhhHHHHHHHHHhcC--C
Confidence 999987 6776432 1 11 233458888888877653110 001237899999999999 8
Q ss_pred CCccc
Q 020852 273 QRYRA 277 (320)
Q Consensus 273 GGW~a 277 (320)
|||..
T Consensus 258 gGf~G 262 (377)
T 1n4q_B 258 NGYHG 262 (377)
T ss_dssp SSBCS
T ss_pred CCcCC
Confidence 88844
No 14
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.11 E-value=8.7e-11 Score=111.86 Aligned_cols=160 Identities=10% Similarity=-0.064 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCc-cc---cccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccC--CChhh
Q 020852 89 RDKSLKVAMKHINYEDEASRY-IT---IGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSF--GSQTW 162 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~~-~~---~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~--~s~vW 162 (320)
++++++++.+.+..+++..+. -+ +...+.++.+|...+. ++.+.++++++.|.+- +.+||.|-... .+.+-
T Consensus 116 ~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~-~~~~~~~k~v~~L~s~--Q~~dGGfg~~pg~esh~~ 192 (331)
T 3dss_B 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGK-LDAINVEKAIEFVLSC--MNFDGGFGCRPGSESHAG 192 (331)
T ss_dssp HHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTC-GGGSCHHHHHHHHHTT--BCTTSCBCSSTTCCCCHH
T ss_pred HHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh--CcCCCCcCCCCCCCCcHH
Confidence 555555555544443333221 01 1112344544444443 3444588999887764 46888777655 46678
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhc
Q 020852 163 DCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLS 242 (320)
Q Consensus 163 dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~ 242 (320)
-|..|+.||..+|..+. ..++|+++||.++|..+ |+|. ......||+--|.+++.+|..++
T Consensus 193 ~T~~al~aL~llg~~~~--~~~~~~~~wL~~~Q~~d---GGf~--------------gr~~k~~D~cys~w~l~~L~llg 253 (331)
T 3dss_B 193 QIYCCTGFLAITSQLHQ--VNSDLLGWWLCERQLPS---GGLN--------------GRPEKLPDVCYSWWVLASLKIIG 253 (331)
T ss_dssp HHHHHHHHHHHTTCGGG--SCHHHHHHHHHTTBCTT---SCBC--------------SSTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccch--hhHHHHHHHHHHhCCCC---CCcC--------------CCCCCCCcchhHHHHHHHHHHcC
Confidence 89999999999987542 34899999999999975 6553 12233467777999999998876
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHhcccCC-CCccccc
Q 020852 243 TMTPEIVGEKMEPERFYDAANFMLSIQVRK-QRYRAID 279 (320)
Q Consensus 243 ~~~~~~~g~~~~~~~i~rav~wLl~~Qn~d-GGW~afe 279 (320)
+. +....+++++||+++||.+ |||+...
T Consensus 254 ~~---------~~~~~~~~~~fil~cQ~~~~GGf~~~p 282 (331)
T 3dss_B 254 RL---------HWIDREKLRSFILACQDEETGGFADRP 282 (331)
T ss_dssp CG---------GGSCHHHHHHHHHHTBCTTTCCBCSST
T ss_pred Cc---------chhhHHHHHHHHHHhcCCCCCCcCCCC
Confidence 42 1234688999999999998 9998753
No 15
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.83 E-value=2.6e-08 Score=110.78 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=113.1
Q ss_pred HHHHHHH---HHHHHHHHhhcCCCC-ccccc------cchH-----Hhhcccccc--cCCCcHHHHHHHHHHhhhhhhcC
Q 020852 87 KLRDKSL---KVAMKHINYEDEASR-YITIG------CVEK-----PLNMLSCWV--EDPNSDYFKKHLARITEYFWVGE 149 (320)
Q Consensus 87 ~lr~~Al---~~~~~~i~~~~~~t~-~~~~~------pv~~-----~l~~L~~~~--~~pd~~~v~~~l~~l~~~l~~~~ 149 (320)
..|++|+ +.+++|+...+..+| |..++ +-+. ++.+|+... ...+++.+++++++|... +.+
T Consensus 976 ~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~--Q~~ 1053 (1451)
T 4acq_A 976 EIKSKAIGYLNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQR--QKD 1053 (1451)
T ss_dssp HHHHHHHHHHHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHT--EET
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhh--ccc
Confidence 4577775 567889988886666 33232 1222 333444322 245778899999999865 568
Q ss_pred CCceecc----------C-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcc-c-CC------------------
Q 020852 150 DGLRVQS----------F-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQ-V-TD------------------ 198 (320)
Q Consensus 150 dG~~~q~----------~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q-~-~~------------------ 198 (320)
||+|... . .+.+.-||+++.||+++|.+.. ++.|+||++||+++- . .+
T Consensus 1054 dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~-~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAla 1132 (1451)
T 4acq_A 1054 NGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVT-HPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFA 1132 (1451)
T ss_dssp TTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHH
T ss_pred CCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHH
Confidence 8887632 1 2568889999999999998765 799999999999761 0 00
Q ss_pred -------------------CCCCC---cccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHH
Q 020852 199 -------------------NPQGD---FRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPE 256 (320)
Q Consensus 199 -------------------~~~Gd---w~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~ 256 (320)
...|+ |.+.......+++.|..... -.++-.||.||+||+.++..+. ..+.+
T Consensus 1133 l~g~~~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~-s~~vE~TayaLLall~~~~~~~-----~~d~~ 1206 (1451)
T 4acq_A 1133 LAGNQDKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAP-SAEVEMTSYVLLAYLTAQPAPT-----SEDLT 1206 (1451)
T ss_dssp HHTCHHHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTT-GGGGTHHHHHHHHHHCCSSCCC-----HHHHH
T ss_pred hcCChhHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCc-hHHHHHHHHHHHHHhhcccccc-----ccchh
Confidence 00022 32221111111111111100 1245689999999987642100 01235
Q ss_pred HHHHHHHHHHhcccCCCCccc
Q 020852 257 RFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 257 ~i~rav~wLl~~Qn~dGGW~a 277 (320)
...+.++||.+.||.+|||.+
T Consensus 1207 ~a~~iv~WL~~qr~~~Ggf~S 1227 (1451)
T 4acq_A 1207 SATNIVKWITKQQNAQGGFSS 1227 (1451)
T ss_dssp HHHTTHHHHTTCCCTTSCCSS
T ss_pred hHHHHHHHHHHcCCCCCCccc
Confidence 678889999999999999976
No 16
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.82 E-value=2.9e-08 Score=99.02 Aligned_cols=159 Identities=9% Similarity=0.026 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccccc-----cchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceecc---C-C
Q 020852 88 LRDKSLKVAMKHINYEDEASRYITIG-----CVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQS---F-G 158 (320)
Q Consensus 88 lr~~Al~~~~~~i~~~~~~t~~~~~~-----pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~---~-~ 158 (320)
.|++=+++..+.+. .-.+.|.+.- .++=+|+.|...+...+....++.++.|... +.++|.+... . .
T Consensus 62 ~~~~Hi~yl~~~L~--~LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~--Q~~dGGFgg~p~~~~~ 137 (520)
T 3q7a_B 62 RKQEHTQFLASSFF--QLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHF--LSPKGGFGGGPANSQI 137 (520)
T ss_dssp CHHHHHHHHHHHHS--CBCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTT--BCTTSSBCSSCTTTSC
T ss_pred CHHHHHHHHHHHhh--hCChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH--cCCCCCCCCCCCCCCC
Confidence 48888888877662 1111121111 1333555556656555555677888877765 4577755432 2 5
Q ss_pred ChhhHHHHHHHHHHHcCCCC--CccHH----HHHHHHHHHhcccCCCCCCCcccccCCCCCC-cccccCCCCCCCCCccc
Q 020852 159 SQTWDCALAVQALLACNLTD--EIGPI----LMKAHDFLKNSQVTDNPQGDFRSMFRHISKG-GWTFSNKDHGWPVSDCS 231 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~--~~~~~----l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~G-GW~Fs~~~~~~Pd~D~T 231 (320)
+.+..|..|+++|+-.|... +.... .+++++||++.|.+| |.|. | -|+= .|+=-|
T Consensus 138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~D---GSF~--------g~~wGe-------~Dir~T 199 (520)
T 3q7a_B 138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPD---GGFV--------VCEGGE-------VDVRGT 199 (520)
T ss_dssp CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTT---SCBB--------SSTTCC-------BCHHHH
T ss_pred CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCC---CCEe--------cCCCCC-------chHHHH
Confidence 67999999999999988642 11222 678999999999986 7774 2 1331 133347
Q ss_pred HHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 232 SESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 232 a~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
-.|+.+|..++. .+.+.++++++||+++||.||||+.
T Consensus 200 Y~Al~~L~lLg~---------~~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 200 YCLLVVATLLDI---------ITPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHHHHHHHHHTC---------CCHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHHHcCC---------CChHHHHHHHHHHHHhcCCCCCccC
Confidence 777777776652 2568899999999999999999987
No 17
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.72 E-value=4.7e-08 Score=93.88 Aligned_cols=124 Identities=18% Similarity=0.208 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccC---CChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhcccCCCCCCCcccc
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSF---GSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKNSQVTDNPQGDFRSM 207 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~---~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~ 207 (320)
.+++++++|..+ +.+||.| ..+ .+..|.|++++.+|..++. ..+ .+.|+||++||+++|..| |.|.+.
T Consensus 92 ~i~~g~~~ll~~--Q~~dGgf-~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~Q~~d---G~~~~~ 164 (367)
T 1hzf_A 92 LIQKGYMRIQQF--RKADGSY-AAWLSRDSSTWLTAFVLKVLSLAQEQVGGS-PEKLQETSNWLLSQQQAD---GSFQDP 164 (367)
T ss_dssp HHHHHHHHHHTT--BCTTSCB-CSSTTSCCCHHHHHHHHHHHHHHGGGTCCC-HHHHHHHHHHHGGGBCTT---SCBCCS
T ss_pred HHHHHHHHHHhc--cCCCCCe-eccCCCCCcHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhhccC---CCcccc
Confidence 488888888887 6789877 233 3689999999999999873 323 689999999999999986 888754
Q ss_pred cCCC---CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCC---CCCHHHHHHHHHHHHhc
Q 020852 208 FRHI---SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGE---KMEPERFYDAANFMLSI 268 (320)
Q Consensus 208 ~~~~---~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~---~~~~~~i~rav~wLl~~ 268 (320)
.+.. ..||+.. .-++++.||++|.||+......++.... ....+.+++|++||.+.
T Consensus 165 ~~~~~~~~~gg~~~-----~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~ 226 (367)
T 1hzf_A 165 CPVLDRSMQGGLVG-----NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEK 226 (367)
T ss_dssp SCCSCGGGGGGGSS-----TTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCC-----CcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHh
Confidence 3221 1344421 1135678999999998765311000000 01246799999999876
No 18
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=98.72 E-value=4.6e-09 Score=101.80 Aligned_cols=146 Identities=8% Similarity=0.005 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCChhhHHHH
Q 020852 87 KLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCAL 166 (320)
Q Consensus 87 ~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~ 166 (320)
...+.|++++++||..+|..+| ||+.. +|+.. .|+-. .+....+ |+-
T Consensus 171 ~~y~~Ai~Rgl~wlL~mQ~~nG--GWpqF------------dpdn~----------~y~~~-------IpFnDDv--t~r 217 (408)
T 1r76_A 171 APYRDAALKGIEYLLASQFPNG--GWPQV------------WPLEG----------GYHDA-------ITYNDDA--LVH 217 (408)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTS--CCBSB------------SSCCC----------GGGGS-------EECGGGH--HHH
T ss_pred HHHHHHHHHHHHHHHHccCCCC--CCcCc------------Ccccc----------ccccC-------CCcCcHH--HHH
Confidence 5678999999999999998887 66632 22210 01000 0001122 444
Q ss_pred HHHHHHHcCCC------------CCccHHHHHHHHHHHhcccC-CCCCCCcc---cccCC-CCCCcccccCCCCCCCCC-
Q 020852 167 AVQALLACNLT------------DEIGPILMKAHDFLKNSQVT-DNPQGDFR---SMFRH-ISKGGWTFSNKDHGWPVS- 228 (320)
Q Consensus 167 a~~AL~~aG~~------------~~~~~~l~kA~~wL~~~Q~~-~~~~Gdw~---~~~~~-~~~GGW~Fs~~~~~~Pd~- 228 (320)
++..|..++.. ...+++++||++||++.|+. + |.|. ..|-. .-.-.|+-++.. |..
T Consensus 218 vle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~d---Gsw~rWg~qY~ygT~~Pa~aRsYE~---psLs 291 (408)
T 1r76_A 218 VAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQD---GKRLGWGQQHDALTLRPTSARNFEP---AALS 291 (408)
T ss_dssp HHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEET---TEECCCCSEECTTTCSBCCCSTTCC---SCEE
T ss_pred HHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccC---CcccchhcccccccCcchhhhccCC---cccc
Confidence 44444444331 13478999999999999998 5 6553 22211 111122222221 122
Q ss_pred -cccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 229 -DCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 229 -D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
..|+.+|+.|+.+.. + .+...++|++||+||.+.|++||+|..
T Consensus 292 ~~esa~il~~LM~~~~-~-----~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 292 STESARILLFLMEIEA-P-----SDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHHHHHTTSSS-C-----CHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHccCCC-C-----CHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 235666677776543 1 112346899999999999999999874
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.71 E-value=3.9e-08 Score=90.53 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhhhhcCCCcee--ccCCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-cccCCCCCCCcccc
Q 020852 133 YFKKHLARITEYFWVGEDGLRV--QSFGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKN-SQVTDNPQGDFRSM 207 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~--q~~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~ 207 (320)
.++++++++..| +.+||.|- ....+.+|.|++++++|..++. ..+ .+.|++|++||.+ +|..| |.|.+.
T Consensus 39 ~i~~g~~~~l~~--q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~d---G~f~~~ 112 (277)
T 1qqf_A 39 LIKKGYTQQLAF--KQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAID-SQVLCGAVKWLILEKQKPD---GVFQED 112 (277)
T ss_dssp HHHHHHHHHHTT--BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCS
T ss_pred HHHHHHHHHHHh--cCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHhccCCC---CCccCC
Confidence 378888888887 67888763 2224689999999999999863 223 5789999999996 99986 777643
Q ss_pred cCCC---CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccC
Q 020852 208 FRHI---SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271 (320)
Q Consensus 208 ~~~~---~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~ 271 (320)
.+-. -.||+.-+ .-+++.-||.+|.||......+. -|.+...+.+++|++||.+.|++
T Consensus 113 ~~~~~~~~~g~~~~~----~~~~~~lta~vl~aL~~~~~~~~--~~~~~~~~~i~~A~~~L~~~~~~ 173 (277)
T 1qqf_A 113 GPVIHQEMIGGFRNT----KEADVSLTAFVLIALQEARDICE--GQVNSLPGSINKAGEYLEASYLN 173 (277)
T ss_dssp SCCSCGGGGGGGGSC----TTHHHHHHHHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHHTT
T ss_pred ccccchhhcCCCCCC----ccCccchHHHHHHHHHhhhhccc--cCCCchHHHHHHHHHHHHHHhcc
Confidence 2211 12443100 01234459999999987642100 01223467899999999999885
No 20
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.69 E-value=4.9e-08 Score=91.45 Aligned_cols=126 Identities=15% Similarity=0.112 Sum_probs=85.9
Q ss_pred HHHHHHHHhhhhhhcCCCcee--ccCCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-cccCCCCCCCccccc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QSFGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKN-SQVTDNPQGDFRSMF 208 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~~ 208 (320)
++++++++..| +.+||.|- ....+.+|.|++++++|..++. ..+ .+.|++|++||.+ +|..+ |.|.+..
T Consensus 56 i~~g~~~~l~~--q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~-~~~i~~a~~~L~~~~Q~~d---Gsf~~~~ 129 (310)
T 2wy7_A 56 IKKGYTQQLAF--RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKPD---GVFQEDA 129 (310)
T ss_dssp HHHHHHHHHTT--BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCSS
T ss_pred HHHHHHHHHHh--cCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhcCCC---CccccCC
Confidence 78889989887 67888663 2224689999999999999863 223 5789999999996 99986 7775433
Q ss_pred CCCC---CCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccC
Q 020852 209 RHIS---KGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271 (320)
Q Consensus 209 ~~~~---~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~ 271 (320)
+... .||+.-+ .-+++.-||.+|.||......+. -|.+...+.+++|++||.+.|++
T Consensus 130 ~~~~~~~~g~~~~~----~~~~~~~ta~vl~aL~~~~~~~~--~~~~~~~~~i~~A~~~L~~~~~~ 189 (310)
T 2wy7_A 130 PVIHQEMIGGLRNN----NEKDMALTAFVLISLQEAKDICE--EQVNSLPGSITKAGDFLEANYMN 189 (310)
T ss_dssp CCSCGGGGGGGTTC----SCHHHHHHHHHHHHHHHHHHHHT--TTCTTHHHHHHHHHHHHHHHGGG
T ss_pred CccCHhhcCCcccc----cccccchHHHHHHHHHhcccccc--cCCcchHHHHHHHHHHHHHHhhc
Confidence 2111 2443200 01234459999999987642100 01223467899999999999885
No 21
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=98.66 E-value=4e-08 Score=94.99 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=67.1
Q ss_pred ChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHH
Q 020852 159 SQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCC 238 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL 238 (320)
+.+-.|..|+++|+..|...+ ....+++++||++.|.+| |.|.... .|+= .|+=-|-.|+.+|
T Consensus 120 ~~v~~T~~Al~~L~~lg~~~~-~id~~~~~~fL~~~Q~~D---GSf~g~~------~wGe-------~DirftY~Al~~l 182 (377)
T 1n4q_B 120 GHIAMTYTGLSCLIILGDDLS-RVDKEACLAGLRALQLED---GSFCAVP------EGSE-------NDMRFVYCASCIC 182 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCCST-TSCHHHHHHHHHHHBCTT---SCBCSST------TCCC-------CBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHHhcCCC---CCeeecc------CCCc-------chhHHHHHHHHHH
Confidence 578999999999999885432 233589999999999987 7774211 2321 1222355666666
Q ss_pred HHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcccc
Q 020852 239 LHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAI 278 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~af 278 (320)
..++. .+.+.++++++||+++||.||||+.-
T Consensus 183 ~llg~---------~~~~~v~ka~~fL~scQn~DGGfGe~ 213 (377)
T 1n4q_B 183 YMLNN---------WSGMDMKKAISYIRRSMSYDNGLAQG 213 (377)
T ss_dssp HHTTC---------GGGSCHHHHHHHHHHTBCTTSSBBSS
T ss_pred HHhcC---------CChHHHHHHHHHHHHhcCCCCCCCCC
Confidence 66653 13456899999999999999999873
No 22
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=98.65 E-value=1.4e-07 Score=94.06 Aligned_cols=138 Identities=13% Similarity=0.076 Sum_probs=89.5
Q ss_pred hHHhhcccccccC-CCc--HHH----HHHHHHHhhhhhhcCCCceecc-C-CChhhHHHHHHHHHHHcCCCCCccHHHHH
Q 020852 116 EKPLNMLSCWVED-PNS--DYF----KKHLARITEYFWVGEDGLRVQS-F-GSQTWDCALAVQALLACNLTDEIGPILMK 186 (320)
Q Consensus 116 ~~~l~~L~~~~~~-pd~--~~v----~~~l~~l~~~l~~~~dG~~~q~-~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~k 186 (320)
+.++..|..++.. |++ ..+ +++++.|.+. +++||+|... + .+.++.|..|+.+|...|.. + .+.++|
T Consensus 144 ysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~sl--Q~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~-~-~~~v~k 219 (520)
T 3q7a_B 144 YASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRC--KRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII-T-PELLHN 219 (520)
T ss_dssp HHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHH--BCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC-C-HHHHTT
T ss_pred HHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHH--hCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC-C-hHHHHH
Confidence 4577777777643 432 233 3455555544 4689998874 6 57899999999999988873 2 678999
Q ss_pred HHHHHHhcccCCCCCCCcccc----------------------cCCCCC-CcccccCCCCCCCCCcccHHHHHHHHHhcC
Q 020852 187 AHDFLKNSQVTDNPQGDFRSM----------------------FRHISK-GGWTFSNKDHGWPVSDCSSESFLCCLHLST 243 (320)
Q Consensus 187 A~~wL~~~Q~~~~~~Gdw~~~----------------------~~~~~~-GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~ 243 (320)
|++||+++|..| |+|++. .|..+. ||. |-.||-||..++.
T Consensus 220 av~fI~scQn~D---GGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGy--------------TfCalAaL~lL~~ 282 (520)
T 3q7a_B 220 VDKFVSACQTYE---GGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGY--------------TSCSLNSHFLLTS 282 (520)
T ss_dssp HHHHHHTTBCTT---SSBCSCEEEEC------------CCSEEEECSCCCHHH--------------HHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCC---CCccCccccccccccccccccccccccCCCCCccchhH--------------HHHHHHHHHHhcc
Confidence 999999999987 888762 111111 222 5556666665654
Q ss_pred CCccccCCCCCHHHHHHHHHHHHhccc---CCCCccc
Q 020852 244 MTPEIVGEKMEPERFYDAANFMLSIQV---RKQRYRA 277 (320)
Q Consensus 244 ~~~~~~g~~~~~~~i~rav~wLl~~Qn---~dGGW~a 277 (320)
.+.. .. .+.-.+++-++||..+|. ++|||.-
T Consensus 283 l~~~--~~-~~~~d~~~l~~WL~~RQ~~~~e~GGF~G 316 (520)
T 3q7a_B 283 VPLP--SF-PLSIDANAALRWTVLQQGEPIEGGGFRG 316 (520)
T ss_dssp SCCT--TC-SCCCCHHHHHHHHHHTBCCGGGTTCBBS
T ss_pred cccc--cc-ccccCHHHHHHHHHHhCCcccCCCcccC
Confidence 2210 00 011235678999999997 4699965
No 23
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.60 E-value=1e-07 Score=105.09 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=108.1
Q ss_pred HHHHHH---HHHHHHHHhhcCCCCcccccc---ch-----HHhhcccc---cccCCCcHHHHHHHHHHhhhhhhcCCCce
Q 020852 88 LRDKSL---KVAMKHINYEDEASRYITIGC---VE-----KPLNMLSC---WVEDPNSDYFKKHLARITEYFWVGEDGLR 153 (320)
Q Consensus 88 lr~~Al---~~~~~~i~~~~~~t~~~~~~p---v~-----~~l~~L~~---~~~~pd~~~v~~~l~~l~~~l~~~~dG~~ 153 (320)
.+++++ +.+++++...|..+|..++.+ -+ .++.+|+. .++..+...+++++++|... +.+||+|
T Consensus 866 ~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~--q~~dG~f 943 (1325)
T 2pn5_A 866 LIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASK--QHFSGRF 943 (1325)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHT--CCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhh--hccCCCc
Confidence 455554 456788888876666333333 11 13333433 34445667899999998875 4578877
Q ss_pred eccC-----------CChhhHHHHHHHHHHHcCCCC-CccHHHHHHHHHHHhcccCCCCCCCccccc--------CCC--
Q 020852 154 VQSF-----------GSQTWDCALAVQALLACNLTD-EIGPILMKAHDFLKNSQVTDNPQGDFRSMF--------RHI-- 211 (320)
Q Consensus 154 ~q~~-----------~s~vWdTa~a~~AL~~aG~~~-~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~--------~~~-- 211 (320)
...+ .+.+.-|++++.||.+.|... +..+.++||++||.++|...+ +.|.... .+.
T Consensus 944 ~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~--~~~~~a~~ayaL~l~g~~~~ 1021 (1325)
T 2pn5_A 944 DKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSIN--NAYDLSIATYAMMLNGHTMK 1021 (1325)
T ss_dssp CCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHTCTTH
T ss_pred cccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccC--CHHHHHHHHHHHHhcCCchH
Confidence 5432 234556889999999887432 224679999999999886521 4453321 010
Q ss_pred --------------C---CCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCC
Q 020852 212 --------------S---KGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQR 274 (320)
Q Consensus 212 --------------~---~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGG 274 (320)
. ..-|.+ -.++-+||+||+||+..+ +.+.+.+.++||++.|+.+||
T Consensus 1022 ~~~l~~L~~~~~~~~~~~~~~w~~------~s~ve~tA~aLlall~~~-----------~~~~~~~~v~wL~~q~~~~g~ 1084 (1325)
T 2pn5_A 1022 EEALNKLIDMSFIDADKNERFWNT------TNPIETTAYALLSFVMAE-----------KYTDGIPVMNWLVNQRYVTGS 1084 (1325)
T ss_dssp HHHHHHHHHTCEEETTTTEEECCS------SSHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTTCCTTSS
T ss_pred HHHHHHHHhhhhhccCCCcccCCC------CCchHHHHHHHHHHhhhc-----------cchhhHHHHHHHHhccCCCCC
Confidence 0 112311 135667999999998754 246778999999999999999
Q ss_pred ccc
Q 020852 275 YRA 277 (320)
Q Consensus 275 W~a 277 (320)
|.+
T Consensus 1085 w~s 1087 (1325)
T 2pn5_A 1085 FPS 1087 (1325)
T ss_dssp CSS
T ss_pred ccc
Confidence 984
No 24
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.58 E-value=1.6e-07 Score=100.27 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=103.7
Q ss_pred HHHHHH---HHHHHHHHhhcCCCCcccccc---chH-----Hhhcccccc--cCCCcHHHHHHHHHHhh-hhhhcCCCce
Q 020852 88 LRDKSL---KVAMKHINYEDEASRYITIGC---VEK-----PLNMLSCWV--EDPNSDYFKKHLARITE-YFWVGEDGLR 153 (320)
Q Consensus 88 lr~~Al---~~~~~~i~~~~~~t~~~~~~p---v~~-----~l~~L~~~~--~~pd~~~v~~~l~~l~~-~l~~~~dG~~ 153 (320)
.+++|+ +.+++++...+..+|..++.+ -+. ++.+|.... ...+...+++++++|.. . +.+||.|
T Consensus 293 ~~~~a~~~i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~--Q~~dG~f 370 (915)
T 2hr0_B 293 KRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEK--QKPDGVF 370 (915)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHH--BCTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhh--ccCCCcc
Confidence 344444 446788877776555222222 122 222333322 13455789999998874 4 4578876
Q ss_pred eccCC---------------ChhhHHHHHHHHHHHcCCC-----CCccHHHHHHHHHHHhcccCCCCCCCcccc------
Q 020852 154 VQSFG---------------SQTWDCALAVQALLACNLT-----DEIGPILMKAHDFLKNSQVTDNPQGDFRSM------ 207 (320)
Q Consensus 154 ~q~~~---------------s~vWdTa~a~~AL~~aG~~-----~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~------ 207 (320)
...+. +.+.-||+++.||+++|.. +..++.|+||++||.++|..-. +.|...
T Consensus 371 ~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~--~~y~~a~layAL 448 (915)
T 2hr0_B 371 QEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ--RSYTVAIAGYAL 448 (915)
T ss_dssp CCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCC--SHHHHHHHHHHH
T ss_pred ccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccC--CHHHHHHHHHHH
Confidence 43321 2466689999999999642 2347899999999999875411 111100
Q ss_pred -------------c-CCCCCCc-ccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCC
Q 020852 208 -------------F-RHISKGG-WTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRK 272 (320)
Q Consensus 208 -------------~-~~~~~GG-W~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~d 272 (320)
. .....|. |.... ....++..||+||+||+..+. .+.+.++++||++.||.+
T Consensus 449 ~l~g~~a~~~l~~L~~~~~~~~~w~~~~--~~~~~ve~TayaLlall~~~~-----------~~~~~~~v~wL~~qq~~~ 515 (915)
T 2hr0_B 449 AQMGRLKGPLLNKFLTTAKDKNRWEDPG--KQLYNVEATSYALLALLQLKD-----------FDFVPPVVRWLNEQRYYG 515 (915)
T ss_dssp HTTTCCCHHHHHHHHHTSBTTTBCCCSS--CHHHHHHHHHHHHHHHHHTTC-----------TTTHHHHHHHHHTCCCSS
T ss_pred HHcCChHHHHHHHHHhhccCCCCCCCCC--CCccchHHHHHHHHHHHhcCC-----------hhhHHHHHHHHHhcccCC
Confidence 0 0011222 43211 000145579999999988652 235788999999999999
Q ss_pred CCccc
Q 020852 273 QRYRA 277 (320)
Q Consensus 273 GGW~a 277 (320)
|||.+
T Consensus 516 Ggw~S 520 (915)
T 2hr0_B 516 GGYGS 520 (915)
T ss_dssp SSCCS
T ss_pred CCccc
Confidence 99974
No 25
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.48 E-value=4.9e-08 Score=92.26 Aligned_cols=109 Identities=12% Similarity=0.137 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHH
Q 020852 160 QTWDCALAVQALLACNL---TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFL 236 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~ 236 (320)
..=||+.++++|+.+.. ...+++++.||++||++.|.++ |+|+-.+++. ++|- +.= -+-| |-|+-+|.
T Consensus 72 DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~n---GGWpqFdpd~--~~Yl--~~I-pFnD-DvtarvLe 142 (332)
T 1gxm_A 72 DNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYST---GALPQFYPLK--GGYS--DHA-TFND-NGMAYALT 142 (332)
T ss_dssp GGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTT---SCCBSEESCC--SGGG--GSE-ECGG-GHHHHHHH
T ss_pred cCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCC---CCccccCCCc--cccc--ccC-Ccch-HHHHHHHH
Confidence 45569999999987533 2356899999999999999986 8998888763 3331 110 1123 66999999
Q ss_pred HHHHhcCCCccccCC-------CCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 237 CCLHLSTMTPEIVGE-------KMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 237 AL~~~~~~~~~~~g~-------~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.|..+......+.|. ....++++||++||+..|-++|||-+
T Consensus 143 lL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g 190 (332)
T 1gxm_A 143 VLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLT 190 (332)
T ss_dssp HHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC
T ss_pred HHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcC
Confidence 998875311101000 12357899999999999999998743
No 26
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.07 E-value=9.4e-06 Score=78.97 Aligned_cols=127 Identities=10% Similarity=-0.025 Sum_probs=78.7
Q ss_pred hcccccccC-CCcHHHHHHHHHHhhhhhhc-CC-C-ceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcc
Q 020852 120 NMLSCWVED-PNSDYFKKHLARITEYFWVG-ED-G-LRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQ 195 (320)
Q Consensus 120 ~~L~~~~~~-pd~~~v~~~l~~l~~~l~~~-~d-G-~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q 195 (320)
.+|...+++ |.+ .=.+-+..|+.++-.+ ++ | .+-+......|..++++.||+.+|.... .+++..|...|
T Consensus 92 LAL~a~C~d~p~~-~g~~Lv~~L~~~~~~e~~~~~~~~~~~p~tn~Yq~sL~vLALC~~g~~v~-----~~~v~~Ll~~~ 165 (414)
T 2bb6_A 92 LALRANCEFIGGR-KGDRLVSQLKRFLEDEKRAIGHNHQGHPRTSYYQYSLGILALCVHQKRVH-----DSVVGKLLYAV 165 (414)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHHHHHHHHHHHCSSSSCCCSSCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHH
T ss_pred HHHHhhCCCCCcc-cchhHHHHHHHHHHHHHhhccccCCCCcccchHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHh
Confidence 344445567 765 3334455555443211 00 0 1111125678999999999999997654 33555666656
Q ss_pred cCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHH----HHHHhcccC
Q 020852 196 VTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAA----NFMLSIQVR 271 (320)
Q Consensus 196 ~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav----~wLl~~Qn~ 271 (320)
..+ ++. -|+| -++|.||+|++||..+.+... .+...+++.+|+ ++|++.|++
T Consensus 166 ~~~----~~~-------~g~~---------~sVDT~AMA~lAL~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~ 221 (414)
T 2bb6_A 166 EHK----PHL-------LQDH---------VSVDTMAMAGMAFSCLELSNL----NPKQRNRINLALKRVQEKILKAQTP 221 (414)
T ss_dssp HSS----SCS-------CCTT---------THHHHHHHHHHHHHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCT
T ss_pred hcc----CcC-------CCCc---------ccccHHHHHHHHHHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcC
Confidence 532 111 1333 278999999999999875210 112357788888 888899999
Q ss_pred CCCcc
Q 020852 272 KQRYR 276 (320)
Q Consensus 272 dGGW~ 276 (320)
||+|+
T Consensus 222 dG~FG 226 (414)
T 2bb6_A 222 EGYFG 226 (414)
T ss_dssp TSCBS
T ss_pred CCCcc
Confidence 99997
No 27
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.07 E-value=4.5e-06 Score=92.16 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=82.8
Q ss_pred HHHHHHHHhhhhhhcCCCce--eccCCChhhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhcccCCCCCCCccccc
Q 020852 134 FKKHLARITEYFWVGEDGLR--VQSFGSQTWDCALAVQALLAC---NLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMF 208 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~--~q~~~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~ 208 (320)
++++++++..| +.+||.| ..+..+..|-|++++++|+++ |...+ .+.+++|++||.++|..+ |.|....
T Consensus 874 i~~g~~rll~~--q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~-~~~l~~a~~~L~~~q~~d---G~f~~~~ 947 (1325)
T 2pn5_A 874 LRQGYQNQMRY--RQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDID-AAMVEKALDWLASKQHFS---GRFDKAG 947 (1325)
T ss_dssp HHHHHHHHGGG--BCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSC-HHHHHHHHHHHHHTCCTT---SCCCCCS
T ss_pred HHHHHHHHHhc--CCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCC-HHHHHHHHHHHHhhhccC---CCccccc
Confidence 66777777777 5788854 333356899999999999987 43223 578999999999999876 7775332
Q ss_pred CCC---CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccC-CCCcc
Q 020852 209 RHI---SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR-KQRYR 276 (320)
Q Consensus 209 ~~~---~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~-dGGW~ 276 (320)
+.. ..|||.- +.--||.+|.||...+..+. .....+++|++||.+.|+. +++|+
T Consensus 948 ~~~~~~~~g~~~~--------~~~~tayvl~aL~~~g~~~~------~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 948 AEYHKEMQGGLRN--------GVALTSYVLMALLENDIAKA------KHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp CCSCHHHHCCSST--------THHHHHHHHHHHHTCHHHHH------HTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred cccChhhcCcccC--------CccccHHHHHHHhhCccccc------ccHHHHHHHHHHHHHhhcccCCHHH
Confidence 211 1255430 12237888888765431100 0246799999999999887 78883
No 28
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.06 E-value=1.2e-05 Score=89.58 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhhhhcCCCcee--cc----CCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHhcccCCCCCCCcc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QS----FGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKNSQVTDNPQGDFR 205 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~----~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~ 205 (320)
++++++++..| +.+||.|- .+ ..+..|-||+++.+|+++.. ..+ .+.+++|++||+++|..+ |.|.
T Consensus 985 i~~g~~~ll~~--q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~-~~~l~~a~~wL~~~Q~~d---G~f~ 1058 (1451)
T 4acq_A 985 LNTGYQRQLNY--KHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFID-EAHITQALIWLSQRQKDN---GCFR 1058 (1451)
T ss_dssp HHHHHHHHGGG--BCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCC-THHHHHHHHHHHHTEETT---TEEC
T ss_pred HHHHHHHHHhh--cCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccC-HHHHHHHHHHHHhhcccC---Cccc
Confidence 67888888887 57888653 21 23689999999999998863 223 689999999999999876 7775
Q ss_pred cccCCCCCCcccccCCCCCC-CCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 206 SMFRHISKGGWTFSNKDHGW-PVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 206 ~~~~~~~~GGW~Fs~~~~~~-Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
+. |.|.......|. .++.-||.+|.||...+. +...+.+++|++||.+.
T Consensus 1059 ~~------g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~--------~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1059 SS------GSLLNNAIKGGVEDEVTLSAYITIALLEIPL--------TVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp CC------CCCSCGGGCCSCSCHHHHHHHHHHHHHHTTC--------CTTCHHHHHHHHHHHHH
T ss_pred cc------CcccchhhcCCCCCCccchHHHHHHHHHcCC--------CCCCHHHHHHHHHHHHh
Confidence 32 333221111111 234569999999987653 23467899999999865
No 29
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.00 E-value=3.4e-05 Score=75.02 Aligned_cols=119 Identities=12% Similarity=0.044 Sum_probs=76.4
Q ss_pred HhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCC---CCccHHHHHHH----HH
Q 020852 118 PLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLT---DEIGPILMKAH----DF 190 (320)
Q Consensus 118 ~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~---~~~~~~l~kA~----~w 190 (320)
.+.+||..+.+.....+++-+... +++.+.-+....|=.||.|++||...+.. ...++.|.+|+ ++
T Consensus 142 ~vLALC~~g~~v~~~~v~~Ll~~~-------~~~~~~~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~ 214 (414)
T 2bb6_A 142 GILALCVHQKRVHDSVVGKLLYAV-------EHKPHLLQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEK 214 (414)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHH-------HSSSCSCCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccHHHHHHHHHHh-------hccCcCCCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHH
Confidence 445677777665544455544322 22322222224577789999999877543 22357788888 77
Q ss_pred HHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCH--HHHHHHHHHHHhc
Q 020852 191 LKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEP--ERFYDAANFMLSI 268 (320)
Q Consensus 191 L~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~--~~i~rav~wLl~~ 268 (320)
|.++|..| |.|+ ..+ -|+.|+.||...... ... ....+++++|++
T Consensus 215 l~~~Q~~d---G~FG--------------N~~-------ST~lA~QAL~~~~~~--------~~~~~w~~~~a~~~Ll~- 261 (414)
T 2bb6_A 215 ILKAQTPE---GYFG--------------NVY-------STPLALQLLMGSLRP--------SVELGTACLKAKAALQA- 261 (414)
T ss_dssp HHHTBCTT---SCBS--------------STT-------THHHHHHHHTTCSSC--------CHHHHHHHHHHHHHHHH-
T ss_pred HHHhhcCC---CCcc--------------chh-------hHHHHHHHHHhcCCC--------cccccchHHHHHHHHHH-
Confidence 77779875 5331 222 299999999876531 122 367789999999
Q ss_pred ccCCCCcc
Q 020852 269 QVRKQRYR 276 (320)
Q Consensus 269 Qn~dGGW~ 276 (320)
|++||+|.
T Consensus 262 q~~dG~F~ 269 (414)
T 2bb6_A 262 SLQHKTFQ 269 (414)
T ss_dssp HHTTTCCC
T ss_pred hccCCCCC
Confidence 99999996
No 30
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=97.94 E-value=2.8e-05 Score=82.88 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhhhhhcCCCcee--ccCCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-cccCCCCCCCcccc
Q 020852 133 YFKKHLARITEYFWVGEDGLRV--QSFGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKN-SQVTDNPQGDFRSM 207 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~--q~~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~ 207 (320)
.++++++++..| +.+||.|- ....+..|.||+++.+|.++.. ..+ ...|++|++||.+ +|..+ |.|.+.
T Consensus 300 ~i~~g~~rll~~--Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~-~~~i~~al~~L~~~~Q~~d---G~f~~~ 373 (915)
T 2hr0_B 300 LIKKGYTQQLAF--RQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAID-SQVLCGAVKWLILEKQKPD---GVFQED 373 (915)
T ss_dssp HHHHHHHHHGGG--CCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCC-HHHHHHHHHHHHHHHBCTT---SCBCCC
T ss_pred HHHHHHHHHHHh--hcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCC-HHHHHHHHHHHHHhhccCC---CccccC
Confidence 367788888877 57888552 3334579999999999999852 223 5789999999995 89876 777532
Q ss_pred cC--C-CCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccC
Q 020852 208 FR--H-ISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVR 271 (320)
Q Consensus 208 ~~--~-~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~ 271 (320)
.+ + ...||+.-+ ..+++.-||.+|.||...+..+. -|.+...+.+++|++||.+.|+.
T Consensus 374 ~~~~~~~m~gg~~~~----~~~~~~ltAyvl~aL~~~g~~~~--~~~~~~~~~i~~A~~yL~~~~~~ 434 (915)
T 2hr0_B 374 APVIHQEMIGGLRNN----NEKDMALTAFVLISLQEAKDICE--EQVNSLPGSITKAGDFLEANYMN 434 (915)
T ss_dssp SCCSSSCCCCSCCCC----TTHHHHHHHHHHHHHHHHTTTST--TTCTTHHHHHHHHHHHHHHHGGG
T ss_pred ccccchhhcCCccCc----cccccccHHHHHHHHHhcccccc--cCcccchHHHHHHHHHHHHhhhc
Confidence 11 1 112433100 01234458999999987753210 01223467899999999998765
No 31
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.72 E-value=0.00025 Score=73.99 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhhhhcCCCce--eccCCChhhHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHhcccCCCCCCCcc
Q 020852 134 FKKHLARITEYFWVGEDGLR--VQSFGSQTWDCALAVQALLACNLT-DEIGPILMKAHDFLKNSQVTDNPQGDFR 205 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~--~q~~~s~vWdTa~a~~AL~~aG~~-~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~ 205 (320)
++++++++..| +.+||+| ..+..+..|-||+++..|.++..- ......+.++.+||..+|..+ |.|.
T Consensus 370 l~~gyqrll~~--q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~---G~f~ 439 (767)
T 4fxk_B 370 IQKGYMRIQQF--RKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD---GSFQ 439 (767)
T ss_dssp HHHHHHHHTTT--BCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTT---SCBC
T ss_pred HHHHHHHHHHh--hcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhc---ccch
Confidence 77888888887 5788854 333345789999999999998432 111567999999999999875 5553
No 32
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.97 E-value=0.00012 Score=82.47 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHhh-hhhhcCCCcee----------ccC----CChhhHHHHHHHHHHHcCCC-----CCccHHHHHHH
Q 020852 129 PNSDYFKKHLARITE-YFWVGEDGLRV----------QSF----GSQTWDCALAVQALLACNLT-----DEIGPILMKAH 188 (320)
Q Consensus 129 pd~~~v~~~l~~l~~-~l~~~~dG~~~----------q~~----~s~vWdTa~a~~AL~~aG~~-----~~~~~~l~kA~ 188 (320)
-|...+.+++++|.. . +.+||++. ++- .+.+-=||+++.||.|++.. ...++.++||.
T Consensus 1079 Vd~~~l~~~~~wL~~~~--Q~~dG~F~e~~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~ 1156 (1642)
T 3prx_B 1079 ISHEIICGGVRWLILNR--QQPDGAFKENAPVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKAT 1156 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhhc--cCCCCcccccccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455578888887764 3 35778653 221 13566799999999999753 12366899999
Q ss_pred HHHHhcccC-CCCC------------CCccc----ccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCC
Q 020852 189 DFLKNSQVT-DNPQ------------GDFRS----MFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGE 251 (320)
Q Consensus 189 ~wL~~~Q~~-~~~~------------Gdw~~----~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~ 251 (320)
+||+++-.. .++. |+... +......--|.- .+..--++-.||.||+|++..+.
T Consensus 1157 ~~L~~~~~~~~~~Y~~Ai~aYAl~l~~~~~~~~l~~l~~~~~~~W~~--~~~~~~~VE~TaYaLLa~l~~~~-------- 1226 (1642)
T 3prx_B 1157 NYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAASTGRDHWEE--YNAHTHNIEGTSYALLALLKMKK-------- 1226 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCCCCC--CCCchHHHHHHHHHHHHHhccCc--------
Confidence 999865211 0000 00000 000000011211 11111256689999999987542
Q ss_pred CCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 252 KMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 252 ~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
-+.....++||...||..|||++
T Consensus 1227 ---~~~a~~iv~WL~~qr~~~Ggf~S 1249 (1642)
T 3prx_B 1227 ---FDQTGPIVRWLTDQNFYGETYGQ 1249 (1642)
T ss_dssp --------------------------
T ss_pred ---hhhHHHHHHHHHHhccCCCcccC
Confidence 23456789999999999999966
No 33
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=96.92 E-value=0.00039 Score=67.30 Aligned_cols=83 Identities=11% Similarity=0.113 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHHcCC---CC---C----ccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcc
Q 020852 161 TWDCALAVQALLACNL---TD---E----IGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDC 230 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~---~~---~----~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~ 230 (320)
|=-+|.|++||...+. .. . .+..|++++++|.++|..+ |.|+ +.=-
T Consensus 152 VDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~d---G~fG---------------------n~yS 207 (399)
T 2pmv_A 152 VDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDN---GIIG---------------------DIYS 207 (399)
T ss_dssp HHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTT---SCBS---------------------SHHH
T ss_pred chHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCC---Cccc---------------------cccc
Confidence 4448999999987654 11 1 3667899999999999875 5432 2223
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHH-HHHHHHHHHHhcccCCCCcc
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPE-RFYDAANFMLSIQVRKQRYR 276 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~-~i~rav~wLl~~Qn~dGGW~ 276 (320)
|+.|+.||+.....+ ..+ ...++++||++ |.+||+|.
T Consensus 208 T~LA~QAL~~~~~~~--------~~~W~c~~al~~l~~-q~~~G~F~ 245 (399)
T 2pmv_A 208 TGLAMQALSVTPEPS--------KKEWNCKKTTDMILN-EIKQGKFH 245 (399)
T ss_dssp HHHHHHHHHHCSSCC--------SSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred HHHHHHHHHhcCCCc--------cccccHHHHHHHHHH-HhhCCCcC
Confidence 999999999876321 224 67889999999 99999996
No 34
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.88 E-value=0.004 Score=70.33 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=79.0
Q ss_pred CCcHHHHHHHHHHhh-hhhhcCCCceec----------c-CCC----hhhHHHHHHHHHHHcCCC-----CCccHHHHHH
Q 020852 129 PNSDYFKKHLARITE-YFWVGEDGLRVQ----------S-FGS----QTWDCALAVQALLACNLT-----DEIGPILMKA 187 (320)
Q Consensus 129 pd~~~v~~~l~~l~~-~l~~~~dG~~~q----------~-~~s----~vWdTa~a~~AL~~aG~~-----~~~~~~l~kA 187 (320)
.+...+++++++|.. . +.++|.+-. + ..+ .+-=||+++.||+++|.. ++.++.|++|
T Consensus 1094 v~~~~l~~a~~~L~~~~--q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a 1171 (1661)
T 2b39_A 1094 IDSKDLCETVKWLILEK--QKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKA 1171 (1661)
T ss_dssp CCHHHHHHHHHHHHHHT--BCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHhh--CCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHH
Confidence 456678999998874 4 356665532 1 111 344489999999999642 2346789999
Q ss_pred HHHHHhcccCC-C------------CCCCcccc----c-CCCCCC-cccccCCCCCCCCCcccHHHHHHHHHhcCCCccc
Q 020852 188 HDFLKNSQVTD-N------------PQGDFRSM----F-RHISKG-GWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEI 248 (320)
Q Consensus 188 ~~wL~~~Q~~~-~------------~~Gdw~~~----~-~~~~~G-GW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~ 248 (320)
.+||.++-..- + ..|+.... . .....| -|... ....-++-.||.||+|++....
T Consensus 1172 ~~yL~~~~~~~~~~y~~A~layAL~l~g~~a~~~l~~L~~~~~~~~~W~~~--~~~~~~vE~tayaLlall~~~~----- 1244 (1661)
T 2b39_A 1172 GDFLENHYRELRRPYTVAIAAYALALLGKLEGDRLTKFLNTAKEKNRWEEP--NQKLYNVEATSYALLALLARKD----- 1244 (1661)
T ss_dssp HHHHHHHTTTCCSHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCS--SCHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHcCCcHHHHHHHHHhhccCCCCCCCC--CCCcchHHHHHHHHHHHHhcCC-----
Confidence 99997752110 0 00111000 0 000112 24211 0000134478999999987652
Q ss_pred cCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 249 VGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 249 ~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
.+...+.++||+..||.+|||.+
T Consensus 1245 ------~~~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A 1245 ------YDTTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp ------TTTSHHHHHHHHHCCTBTTBBCS
T ss_pred ------hhhHHHHHHHHHhcccCCCCccc
Confidence 12356678999999999999975
No 35
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.80 E-value=0.0095 Score=67.31 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=80.6
Q ss_pred CCCcHHHHHHHHHHhh-hhhhcCCCceeccC--------C--------ChhhHHHHHHHHHHHcCCC---CCccHHHHHH
Q 020852 128 DPNSDYFKKHLARITE-YFWVGEDGLRVQSF--------G--------SQTWDCALAVQALLACNLT---DEIGPILMKA 187 (320)
Q Consensus 128 ~pd~~~v~~~l~~l~~-~l~~~~dG~~~q~~--------~--------s~vWdTa~a~~AL~~aG~~---~~~~~~l~kA 187 (320)
..+...+.+++++|.. . +.++|.+-... + +.+-=||+++.||+++|.. ...++.+.+|
T Consensus 1094 ~v~~~~l~~a~~~L~~~~--q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a 1171 (1676)
T 3cu7_A 1094 EQNQNSICNSLLWLVENY--QLDNGSFKENSQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKA 1171 (1676)
T ss_dssp CCCHHHHHHHHHHHHHHS--BCTTSCBCCCSSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhh--CCCCCcccCCccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHH
Confidence 3456678999998876 3 35677653211 0 1333479999999999642 1236788999
Q ss_pred HHHHHhcccC-CC------------CCCCccc---c-------cC--CCCCC---cccccCCCC---C--CC---CCccc
Q 020852 188 HDFLKNSQVT-DN------------PQGDFRS---M-------FR--HISKG---GWTFSNKDH---G--WP---VSDCS 231 (320)
Q Consensus 188 ~~wL~~~Q~~-~~------------~~Gdw~~---~-------~~--~~~~G---GW~Fs~~~~---~--~P---d~D~T 231 (320)
.+||.++-.. .+ ..|+... . .. ....+ -|....... + ++ ++-.|
T Consensus 1172 ~~yL~~~~~~~~~~y~~A~lA~Al~l~g~~~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~t 1251 (1676)
T 3cu7_A 1172 DNFLLENTLPAQSTFTLAISAYALSLGDKTHPQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETT 1251 (1676)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHH
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHH
Confidence 9999765211 00 0122210 0 00 01112 343221000 1 12 34478
Q ss_pred HHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 232 SESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 232 a~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
|.||+|++... +.+...+.++||+..||.+|||.+
T Consensus 1252 ayaLlall~~~-----------~~~~~~~iv~wL~~qr~~~Gg~~S 1286 (1676)
T 3cu7_A 1252 AYALLTSLNLK-----------DINYVNPVIKWLSEEQRYGGGFYS 1286 (1676)
T ss_dssp HHHHHHHHHTT-----------CHHHHHHHHHHHHHHSCSSSCCST
T ss_pred HHHHHHHHhcC-----------ChhHHHHHHHHHHhccCCCCCccc
Confidence 99999998753 345677889999999999999965
No 36
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.80 E-value=0.0067 Score=68.49 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhhhhcCCCce--eccCCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-cccCCCCCCCccccc
Q 020852 134 FKKHLARITEYFWVGEDGLR--VQSFGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKN-SQVTDNPQGDFRSMF 208 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~--~q~~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~~ 208 (320)
++.+++++..| +.+||++ .....+..|-||+++..|.++.. .-+ ...|++|++||.+ +|..+ |.|.+..
T Consensus 1048 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1121 (1661)
T 2b39_A 1048 IRKGYTQQLAF--RQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAID-SKDLCETVKWLILEKQKPD---GIFQEDG 1121 (1661)
T ss_dssp HHHHHHHHHTT--BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTBCTT---SCBCCCS
T ss_pred HHHHHHHHHHh--hcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCC-HHHHHHHHHHhhHhhCCCC---Ccccccc
Confidence 66777888777 5788854 33334579999999999998742 223 6789999999995 88875 7775432
Q ss_pred C---CCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 209 R---HISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 209 ~---~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
+ ....||..- ...+++.-||.+|.||...+..+.. +.+.....+.+|++||...
T Consensus 1122 ~~~~~~~~gg~~~----~~~~~~~ltAyvl~aL~~~~~~~~~--~~~~~~~~i~~a~~yL~~~ 1178 (1661)
T 2b39_A 1122 PVIHQEMIGGFRD----TREKDVSLTAFVLIALHEAKDICEA--QVNSLGRSIAKAGDFLENH 1178 (1661)
T ss_dssp CCCCTTSCCCTTC----CTTSSHHHHHHHHHHHHHTTTTTTT--TCSSHHHHHHHHHHHHHHH
T ss_pred ceechhhcCCccc----cccCccccHHHHHHHHHhccccccc--cCcchhHHHHHHHHHHHHh
Confidence 1 122354420 0112344589999999876432100 1122457888999999764
No 37
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.80 E-value=0.011 Score=57.22 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=51.8
Q ss_pred CChhhHHHHHHHHHHHcCCCCC---------c--cHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCC
Q 020852 158 GSQTWDCALAVQALLACNLTDE---------I--GPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWP 226 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~---------~--~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~P 226 (320)
...+.-|=.|+..+.-.+...+ . .--++++++||+++|.-| |+++...-..+-||.
T Consensus 156 e~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~yd---GGfg~~p~~EsH~G~---------- 222 (390)
T 3dra_B 156 EPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININ---GGFSSTIMDESHLGF---------- 222 (390)
T ss_dssp CCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTT---SCBCSSTTSCCCHHH----------
T ss_pred cchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCC---CCcCCCCCcccccch----------
Confidence 4566666555555554554330 0 123799999999999987 776533222222332
Q ss_pred CCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc
Q 020852 227 VSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV 270 (320)
Q Consensus 227 d~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn 270 (320)
|-.|+-||..+... ...+.+-++||...|.
T Consensus 223 ----TfCalaaL~lL~~~----------~~d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 223 ----TFCAIASLKLLNYP----------LEKLKSTKEWLIHRQV 252 (390)
T ss_dssp ----HHHHHHHHHHTTCC----------GGGCHHHHHHHHTTBC
T ss_pred ----hHHHHHHHHHhCcc----------cccHHHHHHHHHHcCc
Confidence 55566677666531 1346778999999998
No 38
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=96.80 E-value=0.0043 Score=60.02 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCccccccchHHhhccccccc------CCCc-HHHHHHHHHHhhhhhh--cCCCceecc
Q 020852 86 KKLRDKSLKVAMKHINYEDEASRYITIGCVEKPLNMLSCWVE------DPNS-DYFKKHLARITEYFWV--GEDGLRVQS 156 (320)
Q Consensus 86 ~~lr~~Al~~~~~~i~~~~~~t~~~~~~pv~~~l~~L~~~~~------~pd~-~~v~~~l~~l~~~l~~--~~dG~~~q~ 156 (320)
...+.+.+++..+..+.+++. ...-...-++.+|.|... ++.+ ..+.++++.+..++.. .+||.+
T Consensus 129 ~~v~~~~v~kLl~~~~~~g~~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~f--- 202 (399)
T 2pmv_A 129 SEATLPIAVRFAKTLLANSSP---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGII--- 202 (399)
T ss_dssp HHHHHHHHHHHHHHHHHCCSC---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCB---
T ss_pred CCCCHHHHHHHHHHHHccCCc---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcc---
Confidence 356788888888887765211 111111112334455433 1232 2478888887777654 356644
Q ss_pred CCChhhHHHHHHHHHHHcCCCCCccH-HHHHHHHHHHhcccCC
Q 020852 157 FGSQTWDCALAVQALLACNLTDEIGP-ILMKAHDFLKNSQVTD 198 (320)
Q Consensus 157 ~~s~vWdTa~a~~AL~~aG~~~~~~~-~l~kA~~wL~~~Q~~~ 198 (320)
| .++.|++|+|||.++|..+. .+ ...+|.+||++ |+.+
T Consensus 203 -G-n~yST~LA~QAL~~~~~~~~-~~W~c~~al~~l~~-q~~~ 241 (399)
T 2pmv_A 203 -G-DIYSTGLAMQALSVTPEPSK-KEWNCKKTTDMILN-EIKQ 241 (399)
T ss_dssp -S-SHHHHHHHHHHHHHCSSCCS-SCCCHHHHHHHHHH-HHTT
T ss_pred -c-ccccHHHHHHHHHhcCCCcc-ccccHHHHHHHHHH-HhhC
Confidence 3 68999999999999997543 34 68999999999 8876
No 39
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=96.35 E-value=0.011 Score=66.92 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhhhhcCCCce--eccCCChhhHHHHHHHHHHHcCC--CCCccHHHHHHHHHHHh-cccCCCCCCCccccc
Q 020852 134 FKKHLARITEYFWVGEDGLR--VQSFGSQTWDCALAVQALLACNL--TDEIGPILMKAHDFLKN-SQVTDNPQGDFRSMF 208 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~--~q~~~s~vWdTa~a~~AL~~aG~--~~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~~ 208 (320)
++.+++++..| +.+||++ .....+..|-||+++..|.++.. .-+ ...+++|++||.+ +|..+ |.|.+..
T Consensus 1049 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1122 (1676)
T 3cu7_A 1049 LKEGMLSIMSY--RNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQN-QNSICNSLLWLVENYQLDN---GSFKENS 1122 (1676)
T ss_dssp HHHHHHHGGGG--BCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHSBCTT---SCBCCCS
T ss_pred HHHHHHHHhhc--cCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHhhCCCC---CcccCCc
Confidence 66777777777 5788853 33334579999999999998732 223 6789999999999 88875 7775432
Q ss_pred C--C-CCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 209 R--H-ISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 209 ~--~-~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
+ + ...||..-.. ..+++.-||.+|.||...+... +......++.+|++||...
T Consensus 1123 ~~~~~~~~gg~~~~~---~~~~~~ltAyvl~aL~~~~~~~----~~~~~~~~i~~a~~yL~~~ 1178 (1676)
T 3cu7_A 1123 QYQPIKLQGTLPVEA---RENSLYLTAFTVIGIRKAFDIC----PLVKIDTALIKADNFLLEN 1178 (1676)
T ss_dssp SCCCCCCCSCHHHHH---HHHHHHHHHHHHHHHHHTGGGS----CCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcCCccccc---ccCccccHHHHHHHHHhccccc----CCcccHHHHHHHHHHHHHh
Confidence 2 1 1124332000 0013335899999997754210 0111345677888887654
No 40
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.07 E-value=0.00099 Score=75.03 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhcCCCcee--ccCCChhhHHHHHHHHHHHcCCC---CCccHHHHHHHHHHHh-cccCCCCCCCcccc
Q 020852 134 FKKHLARITEYFWVGEDGLRV--QSFGSQTWDCALAVQALLACNLT---DEIGPILMKAHDFLKN-SQVTDNPQGDFRSM 207 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~--q~~~s~vWdTa~a~~AL~~aG~~---~~~~~~l~kA~~wL~~-~Q~~~~~~Gdw~~~ 207 (320)
++.++.++..| +.+||+|- ....+.+|-|||++..|++|..- -+ ...|.+|++||.+ +|..+ |.|.+.
T Consensus 1032 i~~Gyqr~l~y--q~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd-~~~l~~~~~wL~~~~Q~~d---G~F~e~ 1105 (1642)
T 3prx_B 1032 IVTGYAQQMVY--KKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGIS-HEIICGGVRWLILNRQQPD---GAFKEN 1105 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHh--cCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCC-HHHHHHHHHHHHhhccCCC---Cccccc
Confidence 66777888877 57888542 22346789999999999987321 23 5689999999998 78765 877654
Q ss_pred cCC---CCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 208 FRH---ISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 208 ~~~---~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
-+- .-.||-. ..+ .++.-||.++.||+........ +......++.+|++||.+.
T Consensus 1106 ~~v~~~~m~Gg~~--~~~---~~~~lTA~vliaL~e~~~~~~~--~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1106 APVLSGTMQGGIQ--GAE---EEVYLTAFILVALLESKTICND--YVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccccchhccCCcc--CCC---CcccchHHHHHHHHhccccccc--ccccchHHHHHHHHHHHHh
Confidence 331 1234421 001 2566799999999876532110 0112356899999999753
No 41
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.71 E-value=0.064 Score=51.73 Aligned_cols=126 Identities=16% Similarity=0.115 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhhhhcCCCceeccC-CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCC-CCCCcccccCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSF-GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDN-PQGDFRSMFRHI 211 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~-~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~-~~Gdw~~~~~~~ 211 (320)
..+|++.+.+.+-.-+. .++.- .+.+|-+=+++.||.--|..+-....-++-++|+.++|+.++ ..|+++
T Consensus 6 ~~kHiky~~~~L~~Lp~--~~~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~------ 77 (390)
T 3dra_B 6 INKHEKFFNRCLIGLPS--TAQSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFR------ 77 (390)
T ss_dssp HHHHHHHHHHHHHCCCG--GGGGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEEC------
T ss_pred HHHHHHHHHHHHHhCCc--chhhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcC------
Confidence 56888877765432222 22333 678999999999999988652113446778999999998642 113321
Q ss_pred CCCccc-ccCCCC--CCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhccc---C-CCCccc
Q 020852 212 SKGGWT-FSNKDH--GWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQV---R-KQRYRA 277 (320)
Q Consensus 212 ~~GGW~-Fs~~~~--~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn---~-dGGW~a 277 (320)
|-. +...++ ..|.+-.|=.||.+|..++.. .-..++++ +-++||.++|+ + ||||..
T Consensus 78 ---g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~----~~~~vdr~---~i~~~l~~lQ~~~~~~dGsF~~ 140 (390)
T 3dra_B 78 ---STHYFQKTNQKYDCPNLSSTLFALYNLLILKSP----YHTIINRK---KIMNFLCKCQVKDGINKGGFVP 140 (390)
T ss_dssp ---SSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC----GGGTCCHH---HHHHHHHHHBCCSSTTTTCBCS
T ss_pred ---CCccCCCCCCccCcccHHHHHHHHHHHHHhCch----hhccccHH---HHHHHHHHHhCCCCCCCCceee
Confidence 111 111121 235666788888888877631 00123443 35789999999 6 899984
No 42
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=95.47 E-value=0.053 Score=56.37 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHh
Q 020852 163 DCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHL 241 (320)
Q Consensus 163 dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~ 241 (320)
-||+++.|+....-. .+.+.+.++||.++|... |||. |+. ||+.||.||...
T Consensus 585 ttayaLla~l~~~~~---~~~a~~iv~WL~~Qr~~~---------------Ggf~-STQ--------dTv~AL~ALa~y 636 (767)
T 4fxk_B 585 TTAYALLHLLLHEGK---AEMADQASAWLTRQGSFQ---------------GGFR-STQ--------DTVIALDALSAY 636 (767)
T ss_dssp HHHHHHHHHHHHTSS---CHHHHHHHHHHHHTCCTT---------------SSCS-SHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCc---hhHHHHHHHHHHHhhcCC---------------CCCc-CHH--------HHHHHHHHHHHH
Confidence 489999998876532 456888999999887753 5553 432 499999999764
No 43
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.43 E-value=0.011 Score=61.30 Aligned_cols=99 Identities=16% Similarity=0.258 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHIS 212 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~ 212 (320)
.++..+++|++.+-.-.|| .....+||||.+ ||+..- .. .|.-...++||++.|..| |.|+.
T Consensus 10 ~~~~~~~~ir~~l~~~~~g----~~S~S~YDTAWV--Amvp~~--~~-~p~Fp~~~~wil~nQ~~D---GsWG~------ 71 (727)
T 3pya_A 10 AFKEAVKSVKTILRNLTDG----EITISAYDTAWV--ALIDAG--DK-TPAFPSAVKWIAENQLSD---GSWGD------ 71 (727)
T ss_dssp HHHHHHHHHHHHHHTCCSC----CCCCCHHHHHHH--HTCBCS--SS-SBSCHHHHHHHHHTCCTT---SCCSC------
T ss_pred HHHHHHHHHHHHHHhccCC----cccCcHHHhHHH--hhccCC--CC-CCCCHHHHHHHHhcCCCC---CCCCC------
Confidence 4667777777765333444 125578999993 555332 22 345678899999999987 66641
Q ss_pred CCcccccCCCCCCCCC---cccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 213 KGGWTFSNKDHGWPVS---DCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 213 ~GGW~Fs~~~~~~Pd~---D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
..+.+.. -.|..++.||..-. +..+++++|+.+|.+.
T Consensus 72 ---------~~~~~~~D~ll~TLAcvlAL~~w~----------~~~~~i~rGl~fl~~n 111 (727)
T 3pya_A 72 ---------AYLFSYHDRLINTLACVVALRSWN----------LFPHQCNKGITFFREN 111 (727)
T ss_dssp ---------SSSCCHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHH
T ss_pred ---------CCCcchhhHHHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHH
Confidence 1112223 36888888887632 2468999999999753
No 44
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=95.36 E-value=0.014 Score=61.27 Aligned_cols=101 Identities=11% Similarity=0.151 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHIS 212 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~ 212 (320)
.++.-+++|+..+-.-.+|. ....+||||. .||+..--... .|.-..+++||++.|..| |.|+.
T Consensus 32 ~~~~~~~~i~~~~~~~~~g~----~S~S~YDTAW--Vamvp~~~~~~-~p~Fp~~~~wil~nQ~~D---GsWg~------ 95 (785)
T 3s9v_A 32 RIETLISEIKNMFRCMGYGE----TNPSAYDTAW--VARIPAVDGSD-NPHFPETVEWILQNQLKD---GSWGE------ 95 (785)
T ss_dssp HHHHHHHHHHHHHHHCSSCC----CCCCHHHHHH--HTTSBCTTSCS-SBSSHHHHHHHHHCCCTT---SCCSC------
T ss_pred HHHHHHHHHHHHhhcCCCCc----ccCcHHHhhH--HhccccCCCCC-CCCchHHHHHHHHccCCC---CCCCC------
Confidence 45566677776643223441 2457899999 44443211112 466788999999999986 66641
Q ss_pred CCcccccCCCCCCCC---CcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 213 KGGWTFSNKDHGWPV---SDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 213 ~GGW~Fs~~~~~~Pd---~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
. ...+. +-.|..++.||..-. +..+++++|+.+|.+.
T Consensus 96 ------~---~~~~~~d~l~~TlAcvlAL~~w~----------~~~~~i~~Gl~fl~~n 135 (785)
T 3s9v_A 96 ------G---FYFLAYDRILATLACIITLTLWR----------TGETQVQKGIEFFRTQ 135 (785)
T ss_dssp ------S---SSCCHHHHHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHH
T ss_pred ------C---CCCchHHHHHHHHHHHHHHHHcc----------cCHHHHHHHHHHHHHH
Confidence 1 11122 336888899987643 2468999999999754
No 45
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=95.08 E-value=0.021 Score=60.11 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=53.7
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHH
Q 020852 158 GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLC 237 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~A 237 (320)
...+||||. .||+..--... .|.-..+++||++.|..| |.|+.. ++ |+. +-.+-.|..++.|
T Consensus 80 S~S~YDTAW--VAmvp~~~~~~-~p~Fp~~~~wil~nQ~~D---GsWg~~------~~--~~~----~d~ll~TlAcvlA 141 (817)
T 3sdr_A 80 TPSAYDTAW--VARVPAIDGSA-RPQFPQTVDWILKNQLKD---GSWGIQ------SH--FLL----SDRLLATLSCVLV 141 (817)
T ss_dssp CCCHHHHHH--HHTCBCTTSCS-SBSSHHHHHHHHHCCCTT---SCCSCT------TC--CCH----HHHHHHHHHHHHH
T ss_pred ccCHHHhhH--HheeecCCCCC-CCCchHHHHHHHHccCCC---CCCCCC------CC--cch----HHHHHHHHHHHHH
Confidence 557899999 45543311112 466788999999999986 666411 00 111 1123358888888
Q ss_pred HHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 238 CLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 238 L~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
|..-. +..+++++|+.+|.+.
T Consensus 142 L~~w~----------~~~~~i~~Gl~fl~~n 162 (817)
T 3sdr_A 142 LLKWN----------VGDLQVEQGIEFIKSN 162 (817)
T ss_dssp HHHTT----------CCHHHHHHHHHHHHHH
T ss_pred HHHcc----------CCHHHHHHHHHHHHHH
Confidence 87643 2468999999999864
No 46
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=94.95 E-value=0.02 Score=59.77 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHhcccCCCCCCCcccccCCC
Q 020852 133 YFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACN-LTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHI 211 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG-~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~ 211 (320)
.++.-+++|+..+-...+|. ....+||||. .||+..- ......|.-..+++||++.|..| |.|+..
T Consensus 9 ~~~~~~~~i~~~~~~~~~g~----~S~S~YDTAW--Vamvp~~~~~~~~~p~Fp~~~~wil~nQ~~D---GsWg~~---- 75 (764)
T 3p5p_A 9 RADELVVKIKDMFNALGDGD----ISPSAYDTAW--VARLATISSDGSEKPRFPQALNWVFNNQLQD---GSWGIE---- 75 (764)
T ss_dssp HHHHHHHHHHHHHHTCSSCC----CCCCHHHHHH--HHHCEEECTTSCEEESCHHHHHHHHHCCCTT---SCCSCT----
T ss_pred HHHHHHHHHHHHHhcCCCCc----ccCcHHHHHH--HHhCccccCCCCCCCCChHHHHHHHHccCCC---CCCCCC----
Confidence 35555666765543223331 2557899999 4554321 01112456788999999999986 666411
Q ss_pred CCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 212 SKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 212 ~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
++ |+. +-.+-.|..++.||..-. +..+++++|+.+|.+.
T Consensus 76 --~~--~~~----~d~ll~TlAcvlAL~~w~----------~~~~~i~~Gl~fl~~n 114 (764)
T 3p5p_A 76 --SH--FSL----CDRLLNTTNSVIALSVWK----------TGHSQVQQGAEFIAEN 114 (764)
T ss_dssp --TS--CCH----HHHHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHH
T ss_pred --CC--cch----HHHHHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHH
Confidence 00 111 112335888888887633 2458999999999754
No 47
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=91.08 E-value=0.81 Score=43.72 Aligned_cols=118 Identities=16% Similarity=0.100 Sum_probs=69.6
Q ss_pred CCCceeccCCC--------hhh-HHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhcccCCCCCCCc-ccccCCCCCCc
Q 020852 149 EDGLRVQSFGS--------QTW-DCALAVQALLACNL---TDEIGPILMKAHDFLKNSQVTDNPQGDF-RSMFRHISKGG 215 (320)
Q Consensus 149 ~dG~~~q~~~s--------~vW-dTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw-~~~~~~~~~GG 215 (320)
+.+..+|.|+. ++| ||.+.+.+|..++. .+++....+++++++.+.+++++ |.. ...+-++..|-
T Consensus 126 ~~~g~i~sw~~~~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~ 203 (377)
T 2ahf_A 126 ADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGN 203 (377)
T ss_dssp TTTTEECCBSSTTCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCC
T ss_pred CCCCeEEeccCCCCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCC
Confidence 55555665531 344 88888888876532 23566777888999999998753 422 22222333454
Q ss_pred ccccCCCCCCCCCccc------HHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCC
Q 020852 216 WTFSNKDHGWPVSDCS------SESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQR 274 (320)
Q Consensus 216 W~Fs~~~~~~Pd~D~T------a~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGG 274 (320)
+-.....+|| .|+. |+++.|+..+-+. .+.+..-+.-++..++++....+||+
T Consensus 204 ~~~~~t~qG~--~dds~WaRGqAw~i~gl~~ly~~----T~d~~yL~~A~~la~~~l~~~~~d~~ 262 (377)
T 2ahf_A 204 AIRGGTHQGN--TDGSTWTRGQAWGIYGFALNSRY----LGNADLLETAKRMARHFLARVPEDGV 262 (377)
T ss_dssp EEEEECSSSS--STTSCBHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCCTTSS
T ss_pred eeeCCCcCCc--CCcchhHHHHHHHHHHHHHHHHH----HCChHHHHHHHHHHHHHHHhhHHhCC
Confidence 4222223444 3456 9999999886531 11111223455667889988877777
No 48
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.60 E-value=1.9 Score=42.10 Aligned_cols=133 Identities=13% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCcHHHHHHHHHHhhhhhhc--------CCCceecc--------------CCChhhHHHHHHHHHHHcCC---CCCccHH
Q 020852 129 PNSDYFKKHLARITEYFWVG--------EDGLRVQS--------------FGSQTWDCALAVQALLACNL---TDEIGPI 183 (320)
Q Consensus 129 pd~~~v~~~l~~l~~~l~~~--------~dG~~~q~--------------~~s~vWdTa~a~~AL~~aG~---~~~~~~~ 183 (320)
.+-..|++-+++|.++|-.. ..|..+-. ...--|+-++++.||.++.. .+++...
T Consensus 27 ~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv~l~gl~~ay~~Tgd~kY~~y 106 (445)
T 3k11_A 27 LTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGVTYSALIAAAETTGDKRYTDY 106 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHHHHHHHHHHHHHHCCHHHHHH
Confidence 44467899999888776541 13322211 11122888999999988743 2245667
Q ss_pred HHHHHHHHHhc------ccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHH
Q 020852 184 LMKAHDFLKNS------QVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPER 257 (320)
Q Consensus 184 l~kA~~wL~~~------Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~ 257 (320)
++++++||.+. |+.++ |.....+++ + +. +. -.||.+..+.+|+.+.+. .+.+...+.
T Consensus 107 a~~~~dfi~~~~p~~~~~~~~~--G~l~~~~r~----~--~~--~~---~LDD~g~~~~~Li~lY~~----T~d~~yl~~ 169 (445)
T 3k11_A 107 VQNRFRFLAEVAPHFKRVYEEK--GKTDSQLLQ----I--LT--PH---ALDDAGAVCTAMIKLRLK----DESLPVDGL 169 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHH----H--HS--CC---SGGGTHHHHHHHHHHHHH----CTTCCCHHH
T ss_pred HHHHHHHHHhccchhhhhhhcc--CCeeccccc----c--cC--CC---cchhHHHHHHHHHHHHHh----cCCHHHHHH
Confidence 88888888752 44322 433222222 1 11 11 367888777788776431 234557899
Q ss_pred HHHHHHHHHhcc--cCCCCcccc
Q 020852 258 FYDAANFMLSIQ--VRKQRYRAI 278 (320)
Q Consensus 258 i~rav~wLl~~Q--n~dGGW~af 278 (320)
+.+..+||+..| +++||+--.
T Consensus 170 a~~~ad~L~~~~pRt~~Ggf~h~ 192 (445)
T 3k11_A 170 IQNYFDFIINKEYRLADGTFARN 192 (445)
T ss_dssp HHHHHHHHHHTSCBCTTCCBCBC
T ss_pred HHHHHHHHHHcCCCCCCCceeec
Confidence 999999999999 667988653
No 49
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=85.58 E-value=2.4 Score=41.35 Aligned_cols=155 Identities=10% Similarity=0.073 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhhhhcCCCceeccC-CC------hhhHH--HHHHHHHHHc-C-CCC------CccHHHHHHHHHHHhccc
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSF-GS------QTWDC--ALAVQALLAC-N-LTD------EIGPILMKAHDFLKNSQV 196 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~-~s------~vWdT--a~a~~AL~~a-G-~~~------~~~~~l~kA~~wL~~~Q~ 196 (320)
..+++....+++...+.|.+.-++ .+ ..|.. +.++.||+++ . ++. ++...+++.++.|.+.|-
T Consensus 229 A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~ 308 (445)
T 3k11_A 229 AVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQS 308 (445)
T ss_dssp HHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCC
Confidence 334444555666656778775443 11 15654 4456666654 1 222 123668889999999996
Q ss_pred CCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCcc
Q 020852 197 TDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYR 276 (320)
Q Consensus 197 ~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~ 276 (320)
.+ |-|..- .+ ....|+++++||...=||+..-+.. ........++.++|.+-|++.-++||--.
T Consensus 309 ~~---G~W~~v-ld----------~~~~y~EsSaTAmfaygllkgvr~G--~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 309 GE---GFWHQL-LD----------CNDSYLETSATAIYVYCLAHAINKG--WIDAIAYGPVAQLGWHAVAGKINEEGQVE 372 (445)
T ss_dssp TT---SCEESB-TT----------CTTSCEEHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred CC---Cchhhc-cC----------CCCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence 53 655421 11 1235688999998776665543210 00001134678999999999889998442
Q ss_pred cccc-CC-CCcceeeccccccccCCCCCCchhhh
Q 020852 277 AIDN-LI-IFKACIFNDIGWKNLGMSKIPMGTGT 308 (320)
Q Consensus 277 afe~-~~-~~~~~~l~~~~f~~~~~~~~p~~~~~ 308 (320)
.-.. .+ .++.-|..++|-... +|-|+++
T Consensus 373 ~v~~gtg~g~d~~~Y~~~p~~~~----d~~G~G~ 402 (445)
T 3k11_A 373 GTCVGTGMAFDPAFYYYRPVNVY----AAHGYGP 402 (445)
T ss_dssp SCBCCCCCCSSHHHHHTCCBCTT----CGGGHHH
T ss_pred ceeeccCCCCCchhhccCcccCC----CCccHHH
Confidence 2111 11 123334445666665 6655544
No 50
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=84.55 E-value=1.6 Score=41.56 Aligned_cols=47 Identities=4% Similarity=-0.119 Sum_probs=30.5
Q ss_pred cHHHHHHHHHhcC---CCccccCCCCCHHHHHHHHHHHHhcccCCCCccc
Q 020852 231 SSESFLCCLHLST---MTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRA 277 (320)
Q Consensus 231 Ta~aL~AL~~~~~---~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~a 277 (320)
-+|++.|+..+-+ .|..+.+.+.-.+.+++-++.++..|++||-|-.
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~ 284 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHT 284 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEES
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhh
Confidence 6888888876432 1211101111225678889999999999999975
No 51
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=84.31 E-value=2.6 Score=44.06 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=55.5
Q ss_pred ccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCCh----hhHHHHHHHHHHHcCCCCCccHHH
Q 020852 109 YITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGSQ----TWDCALAVQALLACNLTDEIGPIL 184 (320)
Q Consensus 109 ~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s~----vWdTa~a~~AL~~aG~~~~~~~~l 184 (320)
.+++.+..++-.++.-....+..|.+-..+++|.+- +.+||+|-.+.... +=.|..++.||..-+.. ...|
T Consensus 51 ~~S~S~YDTAWVamvp~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~~~~~~d~l~~TlAcvlAL~~w~~~---~~~i 125 (785)
T 3s9v_A 51 ETNPSAYDTAWVARIPAVDGSDNPHFPETVEWILQN--QLKDGSWGEGFYFLAYDRILATLACIITLTLWRTG---ETQV 125 (785)
T ss_dssp CCCCCHHHHHHHTTSBCTTSCSSBSSHHHHHHHHHC--CCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHHH
T ss_pred cccCcHHHhhHHhccccCCCCCCCCchHHHHHHHHc--cCCCCCCCCCCCCchHHHHHHHHHHHHHHHHcccC---HHHH
Confidence 345555555543434332335567789999988766 57899996543222 44588899999987754 4689
Q ss_pred HHHHHHHHhc
Q 020852 185 MKAHDFLKNS 194 (320)
Q Consensus 185 ~kA~~wL~~~ 194 (320)
+|++.||.+.
T Consensus 126 ~~Gl~fl~~n 135 (785)
T 3s9v_A 126 QKGIEFFRTQ 135 (785)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 52
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=81.36 E-value=1.6 Score=41.55 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=64.4
Q ss_pred ChhhHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCC-----CCcc
Q 020852 159 SQTWDCALAVQALLACNL---TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWP-----VSDC 230 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~P-----d~D~ 230 (320)
-.+|+++..+.+++.+.. .+++....+++++||.+.-..+ ..|||.++. .+|-| ..++
T Consensus 49 k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~-------------~~Gg~~~~~-~dG~~~~~~~~lyd 114 (402)
T 3gt5_A 49 RHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNP-------------ATGGYAWTL-CDDRVEDDTNHCYG 114 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCT-------------TTSCBCSEE-ETTEEEECCEEHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccC-------------CCCcEEEEe-eCCCCCcCCcchHH
Confidence 358999999999988742 2345678899999998753321 126666665 44433 3467
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc-ccCC-CCcc-cccc
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI-QVRK-QRYR-AIDN 280 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~-Qn~d-GGW~-afe~ 280 (320)
-|.++.||..... .|.+...+...+..++|... .+++ ||+- ++..
T Consensus 115 ~Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~ 162 (402)
T 3gt5_A 115 LAFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADA 162 (402)
T ss_dssp HHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECT
T ss_pred HHHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCC
Confidence 8999999987542 23333445566666777654 4444 5543 3443
No 53
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=80.80 E-value=7.6 Score=36.45 Aligned_cols=127 Identities=12% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhhhhcCCCceeccC---------------CChhhH--HHHHHHHHHHc-C-CCC------CccHHHHHHH
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSF---------------GSQTWD--CALAVQALLAC-N-LTD------EIGPILMKAH 188 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~---------------~s~vWd--Ta~a~~AL~~a-G-~~~------~~~~~l~kA~ 188 (320)
..+++....+++...++|.+..++ ....|. .+.++.||.+. . ++. ++....++.+
T Consensus 168 A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~WaRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a 247 (373)
T 1nc5_A 168 VVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMI 247 (373)
T ss_dssp HHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBHHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCcccchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHH
Confidence 445555666666555677665332 112453 45577777765 2 222 2345578889
Q ss_pred HHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc
Q 020852 189 DFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI 268 (320)
Q Consensus 189 ~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~ 268 (320)
++|.+.|.+++ |-|.--. .+++. ...|++++.||...-+|+..-+.. .+. +...+..+++.+.|++.
T Consensus 248 ~~l~~~q~~~d--G~W~~~l---d~~~~-----~~~~~EsSatA~~ay~l~~g~~~g--~l~-~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 248 KSICRYQDKET--GLWYQIV---DKGDR-----SDNWLESSGSCLYMYAIAKGINKG--YLD-RAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHTTSCTTT--SCCBSBT---TCTTS-----TTCCBCHHHHHHHHHHHHHHHHHT--SSC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC--Cceeeec---CCCCC-----CCCCccccHHHHHHHHHHHHHHCC--CCc-HHHHHHHHHHHHHHHHh
Confidence 99999997532 5553111 11111 134678888888777776642110 111 23678899999999873
Q ss_pred ---ccCCC
Q 020852 269 ---QVRKQ 273 (320)
Q Consensus 269 ---Qn~dG 273 (320)
.++||
T Consensus 315 ~~~~~~dG 322 (373)
T 1nc5_A 315 KTETSEDG 322 (373)
T ss_dssp HEEECTTS
T ss_pred ceeECCCC
Confidence 57888
No 54
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=76.89 E-value=2.6 Score=40.30 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHHHcCCC--CCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCC----CCcccH
Q 020852 159 SQTWDCALAVQALLACNLT--DEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWP----VSDCSS 232 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~--~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~P----d~D~Ta 232 (320)
-.+|+++..+.+++.++.. +++....+++++||.+. +.|. . .|||.++...++-| ...+=|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~-~~D~-~-----------~GG~~~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGA-LRDK-K-----------YGGWYACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTT-TBCT-T-----------TSSBCSEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh-ccCc-C-----------CCeEEEEeCCCCCcCCchhHHHHH
Confidence 3579999999999987542 24567889999999987 4331 1 25555554222222 223568
Q ss_pred HHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh-cccC-CCCccc
Q 020852 233 ESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS-IQVR-KQRYRA 277 (320)
Q Consensus 233 ~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~-~Qn~-dGGW~a 277 (320)
+++.|+..... .|.+...+..++.++++.. +..+ +|||-.
T Consensus 115 f~i~al~~~~~-----tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~ 156 (421)
T 2zbl_A 115 FALLGAASAVT-----TGHPEARKLLDYTIEVIEKYFWSEEEQMCLE 156 (421)
T ss_dssp HHHHHHHHHHT-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECC
T ss_pred HHHHHHHHHHH-----hCCccHHHHHHHHHHHHHHHhccCCCCCeee
Confidence 88888876321 2344455677778888875 5555 787743
No 55
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=75.01 E-value=6.6 Score=42.25 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCcccccC-CCCCCcccccCCCCCCCCCcccHHHHHHH
Q 020852 160 QTWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFR-HISKGGWTFSNKDHGWPVSDCSSESFLCC 238 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~-~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL 238 (320)
=+.|++++++||..+|.. +..++..+||.+.|..+ .|.+...|+ +.+++ |. -+..|.|+..|.++
T Consensus 330 W~RDaa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~--~G~~~~~y~i~G~~~-w~-------~~Q~D~~g~~l~~~ 395 (1020)
T 1ulv_A 330 WARDMYQSVTALLAAGDE----EAAARGVEWLFTYQQQP--DGHFPQTSRVDGTIG-QN-------GIQLDETAFPILLA 395 (1020)
T ss_dssp CHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCT--TSCCCSCBCTTSCBC-CC-------CCBTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCC--CCCeeeEEecCCCcC-CC-------CccCccchHHHHHH
Confidence 357999999999999953 56789999999999432 277755553 22221 21 15779999999999
Q ss_pred HHhcCCCccccCCCCCHH-HHHHHHHHHHhcc
Q 020852 239 LHLSTMTPEIVGEKMEPE-RFYDAANFMLSIQ 269 (320)
Q Consensus 239 ~~~~~~~~~~~g~~~~~~-~i~rav~wLl~~Q 269 (320)
..+.+. +.. .-+ .++++++|+...-
T Consensus 396 ~~~~~~-----d~~-~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 396 NQIGRT-----DAG-FYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HHHTCC-----CHH-HHHHTHHHHHHHHHHHC
T ss_pred HHHHhc-----CHH-HHHHHHHHHHHHHHHhC
Confidence 876532 111 123 6899999998863
No 56
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=74.68 E-value=1.9 Score=40.96 Aligned_cols=61 Identities=8% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhhhhcCCCceec----c----CCChhhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhcc
Q 020852 134 FKKHLARITEYFWVGEDGLRVQ----S----FGSQTWDCALAVQALLAC---NLTDEIGPILMKAHDFLKNSQ 195 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q----~----~~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~wL~~~Q 195 (320)
.+++++.|.+.++..+.|.+.- + ..-++||-||++.||++. |.+ ++....+++.++|++.-
T Consensus 77 A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~-~~l~~A~~l~~~i~~~f 148 (402)
T 3gt5_A 77 VHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIK-QAREWMDETWCLLERHF 148 (402)
T ss_dssp HHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHh
Confidence 4556666666555333243321 1 123689999999999973 432 33556666677776653
No 57
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=72.56 E-value=11 Score=39.14 Aligned_cols=80 Identities=20% Similarity=0.104 Sum_probs=54.1
Q ss_pred CccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCCC----hhhHHHHHHHHHHHcCCCCCccHH
Q 020852 108 RYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFGS----QTWDCALAVQALLACNLTDEIGPI 183 (320)
Q Consensus 108 ~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s----~vWdTa~a~~AL~~aG~~~~~~~~ 183 (320)
|.+++.+..++-.++.-.. +..|.+-+.+++|.+- +.+||+|-.+.+. -+=.|..++.||..-++. ...
T Consensus 28 g~~S~S~YDTAWVAmvp~~--~~~p~Fp~~~~wil~n--Q~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~---~~~ 100 (727)
T 3pya_A 28 GEITISAYDTAWVALIDAG--DKTPAFPSAVKWIAEN--QLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLF---PHQ 100 (727)
T ss_dssp CCCCCCHHHHHHHHTCBCS--SSSBSCHHHHHHHHHT--CCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCC---HHH
T ss_pred CcccCcHHHhHHHhhccCC--CCCCCCHHHHHHHHhc--CCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCC---HHH
Confidence 4455665565543333321 4445677889988766 5789999654332 245688899999987765 358
Q ss_pred HHHHHHHHHhc
Q 020852 184 LMKAHDFLKNS 194 (320)
Q Consensus 184 l~kA~~wL~~~ 194 (320)
|+|++.||.+.
T Consensus 101 i~rGl~fl~~n 111 (727)
T 3pya_A 101 CNKGITFFREN 111 (727)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 58
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=72.46 E-value=4.6 Score=41.33 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCCCCCCCccc-ccCCCCCCcccccCCCCCCCCCcccHHHHHHHH
Q 020852 161 TWDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTDNPQGDFRS-MFRHISKGGWTFSNKDHGWPVSDCSSESFLCCL 239 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~-~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~ 239 (320)
+=|++++++||..+|. .+..++.++||.+.|..+ |++.. .+.+.++. |+ -+..|.|+..|.++.
T Consensus 342 ~RD~~~~~~al~~~G~----~~~a~~~l~~l~~~q~~~---G~~~~~~~~~G~p~-w~-------~~Q~D~~g~~l~~~~ 406 (684)
T 1lf6_A 342 SRDLYHVANAFIAAGD----VDSANRSLDYLAKVVKDN---GMIPQNTWISGKPY-WT-------GIQLDEQADPIILSY 406 (684)
T ss_dssp HHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHH---SSCCSCBCTTSCBC-CC-------CCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCC----HHHHHHHHHHHHhhcCCC---CCcccceeCCCCcc-cC-------CccccchHHHHHHHH
Confidence 4689999999999995 356889999999999875 66632 22222211 21 257899999998887
Q ss_pred HhcCCCccccCCCCCHHH-HHHHHHHHHhcc
Q 020852 240 HLSTMTPEIVGEKMEPER-FYDAANFMLSIQ 269 (320)
Q Consensus 240 ~~~~~~~~~~g~~~~~~~-i~rav~wLl~~Q 269 (320)
.+... | .-+. ++++++|+...-
T Consensus 407 ~~~~~-----g---~~~~~v~~al~~i~~~~ 429 (684)
T 1lf6_A 407 RLKRY-----D---LYDSLVKPLADFIIKIG 429 (684)
T ss_dssp HTTCG-----G---GTTTTHHHHHHHHHHHC
T ss_pred HHHHc-----C---chHHHHHHHHHHHHHhC
Confidence 65431 2 2356 999999998864
No 59
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=72.30 E-value=22 Score=33.62 Aligned_cols=125 Identities=11% Similarity=0.105 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhhhhcCCCceeccC--------CChhhHH--HHHHHHHHHc----CCCCC------ccHHHHHHHHHHHh
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSF--------GSQTWDC--ALAVQALLAC----NLTDE------IGPILMKAHDFLKN 193 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~--------~s~vWdT--a~a~~AL~~a----G~~~~------~~~~l~kA~~wL~~ 193 (320)
..+++....+++...++|.+.-++ ....|.. +.++.||.++ .++.+ +...+++.++.|++
T Consensus 195 A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~ 274 (382)
T 3pmm_A 195 ATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAE 274 (382)
T ss_dssp HHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 345555566676555678765432 1234543 3455555543 34432 23567889999999
Q ss_pred cccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 020852 194 SQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ 273 (320)
Q Consensus 194 ~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG 273 (320)
.|-.+ |-|..... ....|+|++.||...=||+...+.. ..+ +...+..++|.+-|++.-++||
T Consensus 275 ~q~~~---G~W~~~~d-----------~~~~y~EsSatA~~ay~ll~~~~~g--~l~-~~Y~~~a~ka~~~l~~~i~~dG 337 (382)
T 3pmm_A 275 CQDDS---GLWHTLLD-----------DPHSYLEASATAGFAYGILKAVRKR--YVG-QHYAGVAEKAIRGIVQNISPQG 337 (382)
T ss_dssp HCCTT---SCEESBTT-----------CTTSCEEHHHHHHHHHHHHHHHHTT--SSC-GGGHHHHHHHHHHHHHTBCTTS
T ss_pred cCCCC---CChhhccC-----------CCCCCccccHHHHHHHHHHHHHHcC--CCc-HHHHHHHHHHHHHHHhhCCCCC
Confidence 99753 55541111 1125788899998877776643311 111 2356889999999999999998
Q ss_pred Cc
Q 020852 274 RY 275 (320)
Q Consensus 274 GW 275 (320)
--
T Consensus 338 ~l 339 (382)
T 3pmm_A 338 EL 339 (382)
T ss_dssp CB
T ss_pred CE
Confidence 54
No 60
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=71.42 E-value=13 Score=38.89 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=56.8
Q ss_pred CccccccchHHhhcccccccCCCcHHHHHHHHHHhhhhhhcCCCceeccCC----ChhhHHHHHHHHHHHcCCCCCccHH
Q 020852 108 RYITIGCVEKPLNMLSCWVEDPNSDYFKKHLARITEYFWVGEDGLRVQSFG----SQTWDCALAVQALLACNLTDEIGPI 183 (320)
Q Consensus 108 ~~~~~~pv~~~l~~L~~~~~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~----s~vWdTa~a~~AL~~aG~~~~~~~~ 183 (320)
|.+++.+..++-.++.-....+..|.+-..+++|.+- +.+||+|-.+.. .-+=.|..++.||..-+.. ...
T Consensus 77 g~~S~S~YDTAWVAmvp~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~~ 151 (817)
T 3sdr_A 77 SMITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKN--QLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVG---DLQ 151 (817)
T ss_dssp CCCCCCHHHHHHHHTCBCTTSCSSBSSHHHHHHHHHC--CCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCC---HHH
T ss_pred cccccCHHHhhHHheeecCCCCCCCCchHHHHHHHHc--cCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HHH
Confidence 3455555565544444433345567789999988766 578999965322 1355688899999987764 468
Q ss_pred HHHHHHHHHhc
Q 020852 184 LMKAHDFLKNS 194 (320)
Q Consensus 184 l~kA~~wL~~~ 194 (320)
|+|++.||.+.
T Consensus 152 i~~Gl~fl~~n 162 (817)
T 3sdr_A 152 VEQGIEFIKSN 162 (817)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 61
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=69.72 E-value=2.7 Score=39.16 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHcCC----CCCccHHHHHHHHHHHhcccCCCCCCCccccc-CCCCCCcccccCCCCCCCCCcccHHH
Q 020852 160 QTWDCALAVQALLACNL----TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMF-RHISKGGWTFSNKDHGWPVSDCSSES 234 (320)
Q Consensus 160 ~vWdTa~a~~AL~~aG~----~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~-~~~~~GGW~Fs~~~~~~Pd~D~Ta~a 234 (320)
.+|+.+.++.+++++.. .+++....+++++||++.-...+ |+|.... ++..+. . .--...+-|.+
T Consensus 51 ~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~--Gg~~~~~d~dg~~~-------~-~~~~~~~~af~ 120 (388)
T 2gz6_A 51 FIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDE--GNWYFALTRGGEPL-------V-QPYNIFSDCFA 120 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTT--SCBCSEECTTSCBC-------C-CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEcCCCCcc-------c-CCcchHHHHHH
Confidence 57999999999988633 13457788999999999854322 5443221 111110 0 01234568888
Q ss_pred HHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCcc
Q 020852 235 FLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ-VRKQRYR 276 (320)
Q Consensus 235 L~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Q-n~dGGW~ 276 (320)
+.||..+... .|.+...+...+..+.++... +++|.|.
T Consensus 121 i~al~~~y~~----tg~~~~l~~A~~~~~~i~~~~~d~~g~~~ 159 (388)
T 2gz6_A 121 AMAFSQYALA----SGEEWAKDVAMQAYNNVLRRKDNPKGKYT 159 (388)
T ss_dssp HHHHHHHHHH----HCCHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 8888765421 122222344555667777655 3345443
No 62
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=69.57 E-value=8.2 Score=40.22 Aligned_cols=81 Identities=11% Similarity=0.060 Sum_probs=54.2
Q ss_pred ccccccchHHhhcccccc--cCCCcHHHHHHHHHHhhhhhhcCCCceeccCCC----hhhHHHHHHHHHHHcCCCCCccH
Q 020852 109 YITIGCVEKPLNMLSCWV--EDPNSDYFKKHLARITEYFWVGEDGLRVQSFGS----QTWDCALAVQALLACNLTDEIGP 182 (320)
Q Consensus 109 ~~~~~pv~~~l~~L~~~~--~~pd~~~v~~~l~~l~~~l~~~~dG~~~q~~~s----~vWdTa~a~~AL~~aG~~~~~~~ 182 (320)
.+++.+..++-.++.-.. ..+..|.+-..+++|.+- +.+||+|-.+... -+=.|..++.||..-+.. ..
T Consensus 28 ~~S~S~YDTAWVamvp~~~~~~~~~p~Fp~~~~wil~n--Q~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~---~~ 102 (764)
T 3p5p_A 28 DISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNN--QLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTG---HS 102 (764)
T ss_dssp CCCCCHHHHHHHHHCEEECTTSCEEESCHHHHHHHHHC--CCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCC---HH
T ss_pred cccCcHHHHHHHHhCccccCCCCCCCCChHHHHHHHHc--cCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCC---HH
Confidence 345555555543333322 334556788899988766 5789999653221 355688899999987754 46
Q ss_pred HHHHHHHHHHhc
Q 020852 183 ILMKAHDFLKNS 194 (320)
Q Consensus 183 ~l~kA~~wL~~~ 194 (320)
.|+|++.||.+.
T Consensus 103 ~i~~Gl~fl~~n 114 (764)
T 3p5p_A 103 QVQQGAEFIAEN 114 (764)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999865
No 63
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=68.71 E-value=10 Score=35.58 Aligned_cols=103 Identities=12% Similarity=-0.011 Sum_probs=58.4
Q ss_pred ChhhHHHHHHHHHHHcCC------CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCC-cccccCCCCCCC-----
Q 020852 159 SQTWDCALAVQALLACNL------TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKG-GWTFSNKDHGWP----- 226 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~------~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~G-GW~Fs~~~~~~P----- 226 (320)
..+|+.+.++.+++.+.. .+++...++++++||.+.-... .| | ||.++...++-|
T Consensus 53 k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~--~g-----------g~g~~~s~d~dg~~~~~~~ 119 (402)
T 1fp3_A 53 KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVA--PP-----------EKKCAFVLTRDGRPVKVQR 119 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSS--TT-----------SCCBCSEECTTSCEEECCS
T ss_pred cchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCc--CC-----------CCceEEEECCCCCcccccc
Confidence 459999999999986532 2345678999999999975332 12 3 555554222211
Q ss_pred CCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc-c-cCCCCcccc
Q 020852 227 VSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI-Q-VRKQRYRAI 278 (320)
Q Consensus 227 d~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~-Q-n~dGGW~af 278 (320)
...+=|.++.|+..+... .|.+...+...+-.++++.. . +++|+|.+.
T Consensus 120 ~lyd~af~~~a~~~~~~a----tgd~~~~~~A~~l~~~~~~~~~d~~~G~f~~~ 169 (402)
T 1fp3_A 120 SIFSECFYTMAMNELWRV----TAEARYQSEAVDMMDQIVHWVREDPSGLGRPQ 169 (402)
T ss_dssp SSHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHTCGGGGCCCC
T ss_pred chHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhccCCCcccCcc
Confidence 234567778887765431 12211223334445555443 3 556776443
No 64
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=66.04 E-value=11 Score=34.98 Aligned_cols=125 Identities=6% Similarity=-0.056 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhhhhcCCCceec-----c----CCChhhHHHHHHHHHHHc----CCCCCccHHHHHHHHHHHhcccCCCC
Q 020852 134 FKKHLARITEYFWVGEDGLRVQ-----S----FGSQTWDCALAVQALLAC----NLTDEIGPILMKAHDFLKNSQVTDNP 200 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q-----~----~~s~vWdTa~a~~AL~~a----G~~~~~~~~l~kA~~wL~~~Q~~~~~ 200 (320)
.+++++.|.+.++. ++|.+.- + ...++|+-||++.||+++ |.+ ++....+++.++++++...+
T Consensus 79 A~~~~~~l~~~~~~-~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~-~~l~~A~~~~~~i~~~~~d~-- 154 (388)
T 2gz6_A 79 ARNGAKFLAQHGRD-DEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEE-WAKDVAMQAYNNVLRRKDNP-- 154 (388)
T ss_dssp HHHHHHHHHHHSBC-TTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCC-CCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCC--
Confidence 45556666665543 3453331 1 135789999999999874 422 34455667777777765422
Q ss_pred CCCcccccCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhc--ccCCCCccc
Q 020852 201 QGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSI--QVRKQRYRA 277 (320)
Q Consensus 201 ~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~--Qn~dGGW~a 277 (320)
.|-|...+++ +. .....++.+.++.||+.+.... |.+...+...+.++.+... +.++|+...
T Consensus 155 ~g~~~~~~~~-----~~------~~~~~~~~~~~~~all~l~~~t----~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e 218 (388)
T 2gz6_A 155 KGKYTKTYPG-----TR------PMKALAVPMILANLTLEMEWLL----PQETLENVLAATVQEVMGDFLDQEQGLMYE 218 (388)
T ss_dssp ---------------CC------CCEETHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHHHHTTEETTTTEECS
T ss_pred CcccCcccCC-----CC------CCCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence 1332221211 10 0122455666777777765321 1111234445555655553 334565433
No 65
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=65.08 E-value=14 Score=37.21 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHH----HcCCCCCccHHHHHHHHHHHh---cccCCCCCCCcccc--c--CCCCCCcccccCCCCCCCCCc
Q 020852 161 TWDCALAVQALL----ACNLTDEIGPILMKAHDFLKN---SQVTDNPQGDFRSM--F--RHISKGGWTFSNKDHGWPVSD 229 (320)
Q Consensus 161 vWdTa~a~~AL~----~aG~~~~~~~~l~kA~~wL~~---~Q~~~~~~Gdw~~~--~--~~~~~GGW~Fs~~~~~~Pd~D 229 (320)
+-|.+++++||. .+|. ....+++.+||.. .|+..++.|.|... . +.....|-.|. ..-+.|..|
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~-~~w~~~Q~D 126 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFT-GNWGRPQRD 126 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCC-SCCSCCCTH
T ss_pred hhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCcccc-CcCCCeecc
Confidence 369999999999 7784 4567889999975 67543444776311 0 00011122221 111237778
Q ss_pred c-----cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCC
Q 020852 230 C-----SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRK 272 (320)
Q Consensus 230 ~-----Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~d 272 (320)
. |++.+.++..........+ ....-+.++++++|+....+..
T Consensus 127 ~~glr~~~~~~~~~~~~~~g~~~~~-~~~~w~~v~~~l~~v~~~w~~~ 173 (599)
T 2vn4_A 127 GPALRAIALIGYSKWLINNNYQSTV-SNVIWPIVRNDLNYVAQYWNQT 173 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHH-HHHTHHHHHHHHHHHHHHTTSC
T ss_pred ccchhHHHHHHHHHHHHHhCCcccc-cHHHHHHHHHHHHHHHHhCCCC
Confidence 7 6666666543321110000 0012368999999999887754
No 66
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.19 E-value=17 Score=24.35 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhhhcCCCceeccCCChhh-HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhccc
Q 020852 132 DYFKKHLARITEYFWVGEDGLRVQSFGSQTW-DCALAVQALLACNLTDEIGPILMKAHDFLKNSQV 196 (320)
Q Consensus 132 ~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vW-dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~ 196 (320)
..+...++.|.+. | + |...++.||..++- + +++|++||.+.+.
T Consensus 9 ~~~~~~l~~L~~M------G----------F~~~~~~~~AL~~t~g--n----ve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSM------G----------FINREANLQALIATGG--D----INAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTT------T----------CCCHHHHHHHHHHHTS--C----HHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHc------C----------CCCHHHHHHHHHHhCC--C----HHHHHHHHHHcCC
Confidence 3456666666654 3 4 67788999999974 2 7999999998763
No 67
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=59.78 E-value=35 Score=32.53 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred cCCCceeccCC-------Chh-hHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHhcccCCCCCCCcc-cccCCCCCCc
Q 020852 148 GEDGLRVQSFG-------SQT-WDCALAVQALLACNL---TDEIGPILMKAHDFLKNSQVTDNPQGDFR-SMFRHISKGG 215 (320)
Q Consensus 148 ~~dG~~~q~~~-------s~v-WdTa~a~~AL~~aG~---~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~-~~~~~~~~GG 215 (320)
.+.+..+|.|+ .++ =|+.+.+.+|..++. .+++....+++.+++.+..++++ |.-. ..+-++..|-
T Consensus 151 ~~~~g~iqsw~~~~~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~d--gs~~h~~~~d~~~G~ 228 (397)
T 2zzr_A 151 QEKGGFIQAWGELGYKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDD--SSAFHTFYFDPETGE 228 (397)
T ss_dssp ETTTTEECCSSSTTCGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTT--SCBCSEEEECTTTCC
T ss_pred CcCCCEEEecccCCCCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCC
Confidence 46666777663 133 389999999987643 23455667778899999998753 3221 1121223354
Q ss_pred ccccCCCCCCCCCccc------HHHHHHHHHhcCCCccccCCCCCHHHHH---HHHHHHHhcccCCCC
Q 020852 216 WTFSNKDHGWPVSDCS------SESFLCCLHLSTMTPEIVGEKMEPERFY---DAANFMLSIQVRKQR 274 (320)
Q Consensus 216 W~Fs~~~~~~Pd~D~T------a~aL~AL~~~~~~~~~~~g~~~~~~~i~---rav~wLl~~Qn~dGG 274 (320)
+......+|| .||. |+++.|+..+-+. .+ +.+-++ +-.++++..=..||+
T Consensus 229 ~~~~~t~qGy--~dds~WaRGqAw~i~gl~~lY~~----T~---d~~yL~~A~~la~~~l~~~~~d~~ 287 (397)
T 2zzr_A 229 PLKGVTRQGY--SDESSWARGQAWGIYGIPLSYRK----MK---DYQQIILFKGMTNYFLNRLPEDKV 287 (397)
T ss_dssp EEEEECTTSS--STTSCBHHHHHHHHHHHHHHHHH----HC---CHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred cccCCccccc--CcchhhHHHHHHHHHHHHHHHHH----HC---CHHHHHHHHHHHHHHHHhhHHhCC
Confidence 4322223444 4555 9999999886531 11 233344 345666665444554
No 68
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.64 E-value=7.5 Score=27.85 Aligned_cols=30 Identities=10% Similarity=-0.122 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ 273 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG 273 (320)
....++||.+.. -.+++||+||++-+...|
T Consensus 34 ~~an~~AL~at~-------------Gnve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 34 YNANLQALIATD-------------GDTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHHHTT-------------SCHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHHHcC-------------CCHHHHHHHHHhCCCccC
Confidence 555788887754 227889999999887765
No 69
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.26 E-value=7.2 Score=27.50 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCC
Q 020852 234 SFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQ 273 (320)
Q Consensus 234 aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG 273 (320)
|.+||.+.. ..++||+|||.+-..+.-
T Consensus 36 A~kALKat~-------------~NvErAaDWLFSH~D~~~ 62 (63)
T 1wgn_A 36 VLRAMKKKG-------------ENIEQILDYLFAHSGPSS 62 (63)
T ss_dssp HHHHHHHHC-------------SCHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcC-------------CCHHHHHHHHHhCCCCCC
Confidence 677776543 338899999998776654
No 70
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=48.78 E-value=45 Score=31.56 Aligned_cols=45 Identities=7% Similarity=0.073 Sum_probs=29.7
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCCccccc
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQRYRAID 279 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGGW~afe 279 (320)
++-.+.+|+.+... .+.+...+.++++++|+++.|.++|.|+...
T Consensus 233 ~aGI~~~Ll~~~~~----~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~ 277 (411)
T 3e6u_A 233 LAGIYYYLMQPSLQ----VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCI 277 (411)
T ss_dssp HHHHHHHHTCGGGC----CCHHHHHHTHHHHHHHHHHTCCTTSCCCSBT
T ss_pred HHHHHHHHHHHHhh----cChHHHHHHHHHHHHHHHHhhccCCCCCCCC
Confidence 55555566554321 1122224678999999999999999998753
No 71
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=43.70 E-value=41 Score=32.80 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHH---HcCCCCCccHHHHHHHHHHHh---cccCCCCCCCcc------cccC-CCC--CCcccccCCCCCC
Q 020852 161 TWDCALAVQALL---ACNLTDEIGPILMKAHDFLKN---SQVTDNPQGDFR------SMFR-HIS--KGGWTFSNKDHGW 225 (320)
Q Consensus 161 vWdTa~a~~AL~---~aG~~~~~~~~l~kA~~wL~~---~Q~~~~~~Gdw~------~~~~-~~~--~GGW~Fs~~~~~~ 225 (320)
+-|.++++.||. .+|..+ ..++..+||.. .|...++.|.|. .+|. +.+ .++| +-
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~----~a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~vdG~~~~~~w-------~~ 121 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTD----LLSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFNVDETAYTGSW-------GR 121 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEECTTSCBCCSCC-------SC
T ss_pred hhhHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhhcccCCCCccccCCCCCceEccCCCccCCcC-------CC
Confidence 369999999999 788643 46777888877 442223347775 4442 222 2344 23
Q ss_pred CCCcc-----cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcc
Q 020852 226 PVSDC-----SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ 269 (320)
Q Consensus 226 Pd~D~-----Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Q 269 (320)
|..|. |+..+.++..........+ ....-+.+++.++||...=
T Consensus 122 ~Q~D~~g~ra~~~~~~~~~l~~~g~~~~~-~~~~w~~i~~~l~~v~~~w 169 (472)
T 1gai_A 122 PQRDGPALRATAMIGFGQWLLDNGYTSAA-TEIVWPLVRNDLSYVAQYW 169 (472)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHTTCHHHH-HHTHHHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHHHHHcCCcccc-chhHHHHHHHHHHHHHHhc
Confidence 77888 6667666652221110000 0011245888999986543
No 72
>3eu8_A Putative glucoamylase; YP_210071.1, structural genomics, JOI for structural genomics, JCSG; 2.12A {Bacteroides fragilis nctc 9343}
Probab=42.76 E-value=40 Score=32.61 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHH
Q 020852 161 TWDCALAVQALLAC---NLTD--EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESF 235 (320)
Q Consensus 161 vWdTa~a~~AL~~a---G~~~--~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL 235 (320)
+=.++|++.|+..+ |.-. +.-.++++.+++|.+.+.- .|-|...+...+.---+|+..+.+ -++-|||.-+
T Consensus 64 ~tniGfgL~A~~vA~e~G~I~r~ea~~R~~~tL~~l~~~~r~---~G~fyhwyD~~Tg~~lpf~~~d~~-~StVDTa~L~ 139 (430)
T 3eu8_A 64 SGGSGFGIMAILAGIDRGYVSREEGLRRMEKIVGFLEKADRF---KGAYPHWWNGETGHVQPFGQKDNG-GDLVETAFLM 139 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCCB---TTBCCSEEETTTCCBCCBTTTBCS-EEHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhchhc---CCcCccccCCCCCCcCCCCcccCc-ccHHHHHHHH
Confidence 44689999998765 6543 2346678889999876553 376665543222222345444433 3444699999
Q ss_pred HHHHHhcC
Q 020852 236 LCCLHLST 243 (320)
Q Consensus 236 ~AL~~~~~ 243 (320)
.+|+.+++
T Consensus 140 ~GlL~ar~ 147 (430)
T 3eu8_A 140 QGLLAVHQ 147 (430)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 73
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=42.26 E-value=25 Score=25.47 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTD 198 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~ 198 (320)
++..-++.||..++-. +++|++||.+.|.+.
T Consensus 41 F~r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 41 FDRTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp CCHHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred CCHHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 6678899999998742 799999999988764
No 74
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=41.88 E-value=30 Score=33.98 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHH---hcccCCCCCCCccc---------cc-CCCC--CCcccccCCCCC
Q 020852 161 TWDCALAVQALLACNLTDEI-GPILMKAHDFLK---NSQVTDNPQGDFRS---------MF-RHIS--KGGWTFSNKDHG 224 (320)
Q Consensus 161 vWdTa~a~~AL~~aG~~~~~-~~~l~kA~~wL~---~~Q~~~~~~Gdw~~---------~~-~~~~--~GGW~Fs~~~~~ 224 (320)
+-|.++++.||.++|...+. ....+.+.+|+. ..|...++.|.|.. +| .+.+ .++|+
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~------- 140 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWG------- 140 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCS-------
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccC-------
Confidence 36999999999999863221 122334444444 45543333477752 22 2222 23442
Q ss_pred CCCCcccHHHHHHHHH
Q 020852 225 WPVSDCSSESFLCCLH 240 (320)
Q Consensus 225 ~Pd~D~Ta~aL~AL~~ 240 (320)
-|..|.++..+.+|..
T Consensus 141 ~~Q~D~~g~~~~al~~ 156 (492)
T 2fba_A 141 RPQNDGPALRAYAISR 156 (492)
T ss_dssp CCBTTHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHH
Confidence 3788999998888764
No 75
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.78 E-value=26 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccCC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVTD 198 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~~ 198 (320)
++...|+.||..++- + +++|++||.+.+...
T Consensus 21 F~~~~a~~AL~~~~~--n----ve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 21 FSKEASRQALMDNGN--N----LEAALNVLLTSNKQK 51 (63)
T ss_dssp CCHHHHHHHHHHTTS--C----HHHHHHHHHHHSSCC
T ss_pred CCHHHHHHHHHHhCC--C----HHHHHHHHHHCCCCc
Confidence 456778899999874 2 799999999988754
No 76
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=38.82 E-value=34 Score=34.84 Aligned_cols=82 Identities=7% Similarity=0.032 Sum_probs=50.7
Q ss_pred CCCccHHHHHHHHHHHhcccCCCCCCCcccccCCCC-------CCcccccCCCCCCCCCcccHHHHHHHHHhcCCCcccc
Q 020852 177 TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHIS-------KGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIV 249 (320)
Q Consensus 177 ~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~-------~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~ 249 (320)
+.++...+.+++--|+..|... +.|..-- .+..+ ...|.|.+. =+=|++.+++||+.+.
T Consensus 291 ~~~~~~~~~rs~~~Lk~l~~~~-~~G~iiA-s~t~~~~e~~~~~~~~dY~~~-----W~RD~~~~~~al~~~G------- 356 (684)
T 1lf6_A 291 NGKANSLYYNSMMILKASEDKT-NKGAYIA-SLSIPWGDGQRDDNTGGYHLV-----WSRDLYHVANAFIAAG------- 356 (684)
T ss_dssp TTTCCHHHHHHHHHHHTTBCSS-STTCBCS-CSSCTTGGGSBSBSCCGGGSB-----CHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHHHHHhccCCC-CCccEEe-ecCCCCccccCCCCCCCCEEE-----eccHHHHHHHHHHHcC-------
Confidence 3445678888888888887632 1254311 11000 122333331 0114777888888765
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCCCcc
Q 020852 250 GEKMEPERFYDAANFMLSIQVRKQRYR 276 (320)
Q Consensus 250 g~~~~~~~i~rav~wLl~~Qn~dGGW~ 276 (320)
..+..++.++||.+.|+++|+|.
T Consensus 357 ----~~~~a~~~l~~l~~~q~~~G~~~ 379 (684)
T 1lf6_A 357 ----DVDSANRSLDYLAKVVKDNGMIP 379 (684)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHSSCC
T ss_pred ----CHHHHHHHHHHHHhhcCCCCCcc
Confidence 34778899999999999999984
No 77
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.66 E-value=28 Score=22.49 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhc
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNS 194 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~ 194 (320)
++..-+..||..+| + +++|++||.++
T Consensus 21 F~~~~a~~AL~~~~---n----~e~A~~~L~~h 46 (47)
T 2ekk_A 21 FTREHAMEALLNTS---T----MEQATEYLLTH 46 (47)
T ss_dssp CCHHHHHHHHHHSC---S----HHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcC---C----HHHHHHHHHcC
Confidence 34566888999886 2 79999999875
No 78
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.97 E-value=24 Score=23.89 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=20.4
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCC
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRK 272 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~d 272 (320)
...+++||.+.. -.+++||+||++.+..+
T Consensus 24 ~~~n~~AL~~~~-------------Gdv~~Ave~L~~~~~~~ 52 (54)
T 2dah_A 24 REANLQALIATG-------------GDVDAAVEKLRQSSGPS 52 (54)
T ss_dssp HHHHHHHHHHHT-------------SCHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHcC-------------CCHHHHHHHHHhCCCcC
Confidence 445688887654 22788999999876544
No 79
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.80 E-value=26 Score=25.42 Aligned_cols=31 Identities=6% Similarity=0.045 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcccCCCC
Q 020852 231 SSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQVRKQR 274 (320)
Q Consensus 231 Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Qn~dGG 274 (320)
...+++||.+.. -.+++||+||++.+.++-|
T Consensus 44 r~~~~~AL~~t~-------------Gnve~Ave~L~~~~~~~s~ 74 (74)
T 1vej_A 44 RDANLQALVATD-------------GDIHAAIEMLLGASGPSSG 74 (74)
T ss_dssp HHHHHHHHHHTT-------------SCHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHhC-------------CCHHHHHHHHHhCCCCCCC
Confidence 445678887643 2278899999998876643
No 80
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=35.33 E-value=2.1e+02 Score=26.30 Aligned_cols=47 Identities=4% Similarity=-0.030 Sum_probs=30.0
Q ss_pred cHHHHHHHHHhcC-CCccccCCCCCHHHHHHHHHHHHhcccC-CCCccc
Q 020852 231 SSESFLCCLHLST-MTPEIVGEKMEPERFYDAANFMLSIQVR-KQRYRA 277 (320)
Q Consensus 231 Ta~aL~AL~~~~~-~~~~~~g~~~~~~~i~rav~wLl~~Qn~-dGGW~a 277 (320)
-+|++.||..+-+ .|.++.+.+.-.+..++-++.++..|++ ||-|-.
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 5788888876543 2211111111234567779999999997 999975
No 81
>3nnb_A Alginate lyase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Probab=35.05 E-value=16 Score=34.77 Aligned_cols=109 Identities=12% Similarity=0.132 Sum_probs=56.2
Q ss_pred ChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHH----HhcccCCCCCCCc-ccccCCCCCCcccccCCCCCCCCCcccHH
Q 020852 159 SQTWDCALAVQALLACNLTDEIGPILMKAHDFL----KNSQVTDNPQGDF-RSMFRHISKGGWTFSNKDHGWPVSDCSSE 233 (320)
Q Consensus 159 s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL----~~~Q~~~~~~Gdw-~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~ 233 (320)
...|+|+..++.++-+=..++ +..++++++.. ...|+..+ |.. .|..|. -+++| ...+-.+.
T Consensus 219 ~NNhgtw~~~qvaaiAvfldD-~~l~~~ai~~f~~~~i~~qI~pD--G~qP~El~Rt---~~~~Y-------s~f~L~~l 285 (382)
T 3nnb_A 219 KNNHGLAYDVQLTAYALYTGN-QDLAMKTIQEFPEKRLFAQIEPD--GKQPLELART---TALGY-------TIFNLGHM 285 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTHHHHSCTT--SCCHHHHTST---BHHHH-------HHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHcCCC--CCCccccCCC---cchhH-------HHhhHHHH
Confidence 356888887776654433444 67888888776 34577533 543 122221 11222 12222333
Q ss_pred HHHHHHHhcCCCccccCC-CCCHHHHHHHHHHHHhcc-cCCCCccccccC
Q 020852 234 SFLCCLHLSTMTPEIVGE-KMEPERFYDAANFMLSIQ-VRKQRYRAIDNL 281 (320)
Q Consensus 234 aL~AL~~~~~~~~~~~g~-~~~~~~i~rav~wLl~~Q-n~dGGW~afe~~ 281 (320)
+..|.++-. ...++-+. ..+..+|.+|++|+.... ...--|+.-+-.
T Consensus 286 ~~lA~~A~~-~G~DLw~y~~~~G~~L~kAleylapy~~~~~~~Wpy~~~~ 334 (382)
T 3nnb_A 286 LDMCSIAST-LGQDIYNATSQDGRSITAALKFLIPYIGKPQSEWPYQQIK 334 (382)
T ss_dssp HHHHHHHHT-TTCCCTTCCCTTCCSHHHHHHHHGGGTTSCGGGCCSCBCS
T ss_pred HHHHHHHHH-cCCchhhccCCCchHHHHHHHHHHHhhccCCCCCCCcCCC
Confidence 333333311 11111111 122478999999999998 444578754333
No 82
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.45 E-value=30 Score=24.19 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcccCC
Q 020852 257 RFYDAANFMLSIQVRK 272 (320)
Q Consensus 257 ~i~rav~wLl~~Qn~d 272 (320)
.+++|++||++-+...
T Consensus 47 nve~A~ewL~~~~~d~ 62 (64)
T 2cpw_A 47 SVQTACDWLFSHSGPS 62 (64)
T ss_dssp CHHHHHHHHHSCCSCC
T ss_pred CHHHHHHHHHhCCCCC
Confidence 3788999999877653
No 83
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.29 E-value=31 Score=25.60 Aligned_cols=29 Identities=21% Similarity=0.109 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhccc
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQV 196 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~ 196 (320)
++..-|..||..++-. +++|++||.++|-
T Consensus 41 F~~~~A~~AL~~t~gd------ve~A~e~L~sh~~ 69 (83)
T 1veg_A 41 FDTVVAEAALRVFGGN------VQLAAQTLAHHGG 69 (83)
T ss_dssp CCHHHHHHHHHHTTTC------HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHhCCC
Confidence 5678899999998732 8999999999875
No 84
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.16 E-value=45 Score=23.90 Aligned_cols=30 Identities=27% Similarity=0.266 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-|..||..++- + +++|++||.++|-.
T Consensus 41 F~~~~a~~AL~~t~~--n----ve~Ave~L~~~~~d 70 (73)
T 1wiv_A 41 FAEDVARKALKASGG--D----IEKATDWVFNNSGP 70 (73)
T ss_dssp CCHHHHHHHHHHTTS--C----HHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHhCC--C----HHHHHHHHHhCCCC
Confidence 456778899999873 2 79999999997753
No 85
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.76 E-value=70 Score=22.24 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-+..||..+|-. -++.|++||.+++..
T Consensus 21 F~~~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 21 FPVHTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp CCHHHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 4567788999988742 279999999999864
No 86
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=30.17 E-value=87 Score=29.43 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhhhhcCCC-ceecc---C----CChhhHHHHHHHHHHHc---CCCCCccHHHHHHHHHHHhc
Q 020852 133 YFKKHLARITEYFWVGEDG-LRVQS---F----GSQTWDCALAVQALLAC---NLTDEIGPILMKAHDFLKNS 194 (320)
Q Consensus 133 ~v~~~l~~l~~~l~~~~dG-~~~q~---~----~s~vWdTa~a~~AL~~a---G~~~~~~~~l~kA~~wL~~~ 194 (320)
..+++++.|.+.++..++| .+..- + .-++||-||++.|+++. |.+ ++...++++.+++++.
T Consensus 74 ~A~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~tg~~-~~l~~a~~~~~~l~~~ 145 (421)
T 2zbl_A 74 LVDHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHP-EARKLLDYTIEVIEKY 145 (421)
T ss_dssp HHHHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHH
Confidence 4567777777765543434 33210 0 24789999999999874 433 4466777888888874
No 87
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.22 E-value=93 Score=20.25 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhc
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNS 194 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~ 194 (320)
++-.-+..||..++-. +++|++||.+.
T Consensus 20 F~~~~a~~AL~~~~~n------~e~A~e~L~~g 46 (49)
T 1ify_A 20 YERERVVAALRASYNN------PHRAVEYLLTG 46 (49)
T ss_dssp CCHHHHHHHHHTTTSC------SHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 5677788999988742 68999999873
No 88
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=28.95 E-value=44 Score=31.01 Aligned_cols=128 Identities=9% Similarity=-0.075 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHc-CC--CCCccHHHHHHHHHHHhcccCCCCCCCccccc
Q 020852 132 DYFKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLAC-NL--TDEIGPILMKAHDFLKNSQVTDNPQGDFRSMF 208 (320)
Q Consensus 132 ~~v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~a-G~--~~~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~ 208 (320)
+..++.+.+..+++....+|.+... +.=|-++.++|+.++ -+ .+++....++..++|......+.
T Consensus 65 ~~y~~~a~~~~~~~~~~~~~~~~~~---~~DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd~~--------- 132 (349)
T 3k7x_A 65 QADLEVAEKTYLHNKNRNGGTLIHD---FYDDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWNDI--------- 132 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCS---BHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCSG---------
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcc---CccHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCCCC---------
Confidence 4444444444444433333322222 234666655555544 11 22233444455566633222221
Q ss_pred CCCCCCcccccCCCCCCCCCcccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHh-cccCCCCcccccc
Q 020852 209 RHISKGGWTFSNKDHGWPVSDCSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLS-IQVRKQRYRAIDN 280 (320)
Q Consensus 209 ~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~-~Qn~dGGW~afe~ 280 (320)
..||-.++.....|..+=+.+.++.++..+.+ ..|.+...+.-++..+|+.+ +.+++|.. ||.
T Consensus 133 ---~gGGi~W~~~~~~~knaisN~~~~~~la~l~~----~tgd~~Yl~~A~~~~~w~~~~l~d~~g~v--~Dg 196 (349)
T 3k7x_A 133 ---MGGGFAWRRPQMYYKNTPVNAPFIILSCWLYN----ELNETKYLEWAMKTYEWQTKVLVREDGFV--EDG 196 (349)
T ss_dssp ---GGSCBEEETTEEEEEEHHHHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHBCTTSCB--CCE
T ss_pred ---CCCceEecCCCccccchhhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHhcCCCCCCeE--ecC
Confidence 12555444321112222235555556655432 12333345667778899875 55666543 554
No 89
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.09 E-value=28 Score=24.79 Aligned_cols=18 Identities=6% Similarity=0.121 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcccCCCC
Q 020852 257 RFYDAANFMLSIQVRKQR 274 (320)
Q Consensus 257 ~i~rav~wLl~~Qn~dGG 274 (320)
.+.+|++-||.|+.++||
T Consensus 47 ~vd~aId~LL~ms~~~~~ 64 (67)
T 2dhy_A 47 AVDATIDQLLQMNLESGP 64 (67)
T ss_dssp CHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHhcCCCCCC
Confidence 377899999999998876
No 90
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=28.06 E-value=1.1e+02 Score=29.51 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHc---CCCC--CccHHHHHHHHHHHhcccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHHH
Q 020852 161 TWDCALAVQALLAC---NLTD--EIGPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSESF 235 (320)
Q Consensus 161 vWdTa~a~~AL~~a---G~~~--~~~~~l~kA~~wL~~~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~aL 235 (320)
+=.++|++.|+..+ |.-. +.-.++++.+++|..... +...|-|...+...+.---.+++.+++ -++-||+.-+
T Consensus 54 ~tniGf~L~a~~va~e~G~I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~-vStVDtg~L~ 131 (424)
T 4gl3_A 54 IGGSGFGVMAIIVGIERGFVTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDG-ADIVESAFMF 131 (424)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCS-EEHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCc-ccHHHHHHHH
Confidence 34688999888755 5533 234567777888843222 223476655543222222334443333 2344699999
Q ss_pred HHHHHhcC
Q 020852 236 LCCLHLST 243 (320)
Q Consensus 236 ~AL~~~~~ 243 (320)
.+|+.+++
T Consensus 132 ~gLl~~~~ 139 (424)
T 4gl3_A 132 EGLLAAHQ 139 (424)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 91
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=27.83 E-value=47 Score=21.54 Aligned_cols=26 Identities=31% Similarity=0.218 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKN 193 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~ 193 (320)
+|.--+++||.+++-. +.+|++||.+
T Consensus 20 ~d~~~~~~AL~~~~gn------v~~Ave~L~~ 45 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGS------VQGALDSLLN 45 (46)
T ss_dssp CCHHHHHHHHHHHTTC------HHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCC------HHHHHHHHHc
Confidence 4556678999988732 7899999975
No 92
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.44 E-value=50 Score=22.93 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-+..||..+|-. -+++|++||.+++..
T Consensus 21 F~~~~a~~AL~~t~~~-----nve~A~ewLl~~~~d 51 (64)
T 1whc_A 21 FPRGRAEKALALTGNQ-----GIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCHHHHHHHHHHHTSC-----CHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCC-----CHHHHHHHHHhCCCC
Confidence 4466788899988522 179999999998764
No 93
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.81 E-value=54 Score=22.47 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhcCCCceeccCCChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhc
Q 020852 134 FKKHLARITEYFWVGEDGLRVQSFGSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKNS 194 (320)
Q Consensus 134 v~~~l~~l~~~l~~~~dG~~~q~~~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~ 194 (320)
+...|+.|.++ | .+|.-.+++||.+++-. +++|++||.+.
T Consensus 17 ~~~qi~~L~~M------G---------F~d~~~~~~AL~~~~gn------ve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM------G---------FFDFDRNVAALRRSGGS------VQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH------T---------CCCHHHHHHHHHHHTSC------HHHHHHHHHHT
T ss_pred HHHHHHHHHHc------C---------CCcHHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 45666666665 2 14566788999998732 78999999874
No 94
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.66 E-value=56 Score=20.50 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKN 193 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~ 193 (320)
++-.-+..||..++-. +++|++||.+
T Consensus 16 F~~~~a~~AL~~~~~n------~e~A~~~L~~ 41 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWD------LEAATNFLLD 41 (43)
T ss_dssp SCHHHHHHHHHHHTSC------HHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCcC------HHHHHHHHHc
Confidence 3456688888888632 7899999976
No 95
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=26.09 E-value=51 Score=21.87 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHhc
Q 020852 163 DCALAVQALLACNLTDEIGPILMKAHDFLKNS 194 (320)
Q Consensus 163 dTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~ 194 (320)
|.-.++.||..++-. +++|++||.+.
T Consensus 26 ~~~~~~~AL~~t~gn------~e~A~e~L~~~ 51 (52)
T 2jy5_A 26 NREANLQALIATGGD------INAAIERLLGS 51 (52)
T ss_dssp CHHHHHHHHHHHTTC------HHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCCC------HHHHHHHHHhC
Confidence 567789999998732 79999999763
No 96
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=25.88 E-value=46 Score=35.74 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=32.4
Q ss_pred ccHHHHHHHHHhcCCCccccCCCCCHHHHHHHHHHHHhcc-cCCCCccc-cccCC
Q 020852 230 CSSESFLCCLHLSTMTPEIVGEKMEPERFYDAANFMLSIQ-VRKQRYRA-IDNLI 282 (320)
Q Consensus 230 ~Ta~aL~AL~~~~~~~~~~~g~~~~~~~i~rav~wLl~~Q-n~dGGW~a-fe~~~ 282 (320)
|++.+++||+.+. ..+..++.++||.+.| +++|.|.. |..++
T Consensus 333 Daa~t~~all~~G-----------~~e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G 376 (1020)
T 1ulv_A 333 DMYQSVTALLAAG-----------DEEAAARGVEWLFTYQQQPDGHFPQTSRVDG 376 (1020)
T ss_dssp HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTCCTTSCCCSCBCTTS
T ss_pred hHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhcCCCCCeeeEEecCC
Confidence 5888888988775 3467888999999999 99998854 44443
No 97
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.58 E-value=1.5e+02 Score=21.87 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++...|..||..++-. +++|++||.+++..
T Consensus 33 F~~~~a~~AL~~~n~n------~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 33 FPREPAEEALKSNNMN------LDQAMSALLEKKVD 62 (85)
T ss_dssp CCHHHHHHHHHHTTSC------HHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHHCcCC
Confidence 4456678888555422 79999999998764
No 98
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=25.19 E-value=1.1e+02 Score=29.50 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=47.2
Q ss_pred Hhhccccccc-CCCcHHHHHHHHHHhhhhhhcCCCceecc-----CCC------hhhHHHHHHHHHHHcCCCCCccHHHH
Q 020852 118 PLNMLSCWVE-DPNSDYFKKHLARITEYFWVGEDGLRVQS-----FGS------QTWDCALAVQALLACNLTDEIGPILM 185 (320)
Q Consensus 118 ~l~~L~~~~~-~pd~~~v~~~l~~l~~~l~~~~dG~~~q~-----~~s------~vWdTa~a~~AL~~aG~~~~~~~~l~ 185 (320)
.|..|-++|+ ++++|.+++-++.|.+- .+--++.+ .|+ .+|=-++++++|... + +..++
T Consensus 305 SLLslPylGf~~~dDpiYqNTrk~IlS~----~NPyy~~G~~~~GiG~PH~~~~~~Wpmsl~~~~lTs~----d-~~Ei~ 375 (426)
T 3qry_B 305 SLLAAPYLGYCSVDDEVYQATRRTILSS----ENPYFYQGEYASGLGSSHTFYRYIWPIALSIQGLTTR----D-KAEKK 375 (426)
T ss_dssp CSTTTTTTTSSCTTCHHHHHHHHHHTST----TSTTEEECSSCEEECCTTSCTTEECHHHHHHHHHTCS----C-HHHHH
T ss_pred hHHHHHHcCCCCCCCHHHHHHHHHHhcc----cCCceeccCccCcCCCCCCCCCCchHHHHHHHHHhCC----C-HHHHH
Confidence 3445566775 68999999999866542 22222222 233 389999998888743 2 56789
Q ss_pred HHHHHHHhccc
Q 020852 186 KAHDFLKNSQV 196 (320)
Q Consensus 186 kA~~wL~~~Q~ 196 (320)
+.++||++.-.
T Consensus 376 ~~L~~l~~t~~ 386 (426)
T 3qry_B 376 FLLDQLVACDG 386 (426)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHhcCC
Confidence 99999998654
No 99
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=22.52 E-value=59 Score=32.64 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=28.2
Q ss_pred ccHHHHHHHH----HhcCCCccccCCCCCHHHHHHHHHHHHh---cc---cCCCCcc
Q 020852 230 CSSESFLCCL----HLSTMTPEIVGEKMEPERFYDAANFMLS---IQ---VRKQRYR 276 (320)
Q Consensus 230 ~Ta~aL~AL~----~~~~~~~~~~g~~~~~~~i~rav~wLl~---~Q---n~dGGW~ 276 (320)
|.|.+++||+ .++ ..+..++..+||.. +| |.||+|.
T Consensus 54 Daa~t~~aL~~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~y~~~G~~~ 99 (599)
T 2vn4_A 54 DSALVFKNLIDRFTETY-----------DAGLQRRIEQYITAQVTLQGLSNPSGSLA 99 (599)
T ss_dssp HHHHHHHHHHHHHHHSB-----------CHHHHHHHHHHHHHHHHHHHCCBTTBCST
T ss_pred hHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHhcccceeeeeCCCCCcc
Confidence 6888888988 544 35677888999974 78 9999984
No 100
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=48 Score=22.84 Aligned_cols=30 Identities=27% Similarity=0.256 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-+..||..++-. +++|++||.+++-.
T Consensus 21 F~~~~a~~AL~~t~~n------ve~A~e~L~~~~~d 50 (63)
T 2dak_A 21 FSRDQALKALRATNNS------LERAVDWIFSHIDD 50 (63)
T ss_dssp CCHHHHHHHHHHTTSC------SHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHcCCC------HHHHHHHHHhCCCC
Confidence 3456678888888631 78999999998754
No 101
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.92 E-value=72 Score=22.86 Aligned_cols=31 Identities=6% Similarity=0.009 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-+..||..++-. + +++|++||.+++..
T Consensus 21 F~~~~a~~AL~~t~n~-~----ve~A~ewL~~~~~d 51 (74)
T 2dag_A 21 FPMDACRKAVYYTGNS-G----AEAAMNWVMSHMDD 51 (74)
T ss_dssp CCHHHHHHHHHHHTSC-C----HHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHhCCC-C----HHHHHHHHHhCCCC
Confidence 4467788999988732 1 79999999998864
No 102
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.56 E-value=79 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHhcccC
Q 020852 162 WDCALAVQALLACNLTDEIGPILMKAHDFLKNSQVT 197 (320)
Q Consensus 162 WdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~~Q~~ 197 (320)
++..-+..||..++- + +++|++||.+++-.
T Consensus 41 F~~~~a~~AL~~t~~--n----ve~A~ewL~~~~~d 70 (83)
T 2dai_A 41 FPENRATKALQLNHM--S----VPQAMEWLIEHAED 70 (83)
T ss_dssp CCHHHHHHHHHHTTS--C----HHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHhCC--C----HHHHHHHHHHCCCC
Confidence 446778899998852 2 79999999998764
No 103
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=21.10 E-value=1.4e+02 Score=29.14 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=46.2
Q ss_pred hhccccccc-CCCcHHHHHHHHHHhhhhhhcCCCceecc-----CCCh------hhHHHHHHHHHHHcCCCCCccHHHHH
Q 020852 119 LNMLSCWVE-DPNSDYFKKHLARITEYFWVGEDGLRVQS-----FGSQ------TWDCALAVQALLACNLTDEIGPILMK 186 (320)
Q Consensus 119 l~~L~~~~~-~pd~~~v~~~l~~l~~~l~~~~dG~~~q~-----~~s~------vWdTa~a~~AL~~aG~~~~~~~~l~k 186 (320)
|..|-++|+ ++++|.+++-++.|.+- ++--++.+ .|++ +|=-++++++|.. .+ +..+++
T Consensus 334 LLslPylGf~~~dDpiYqNTrk~IlS~----~NPyY~~G~~~~GiG~PH~~~~~~Wpmsll~~~lTs----~d-~~Ei~~ 404 (463)
T 3p2c_A 334 LLAMPYLGDVNVNDPIYQNTRRFVWSE----DNPYFFKGKAGEGIGGPHIGYDMVWPMSIMMKAFTS----QN-DAEIKT 404 (463)
T ss_dssp STTHHHHTSSCTTCHHHHHHHHHHTST----TSTTEEECSSCEEECCTTTCTTEECHHHHHHHHHTC----CC-HHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHhc----cCCceeccCccccCCCCCCCCCCchHHHHHHHHhcc----CC-HHHHHH
Confidence 445556665 68999999999876532 22223322 2443 8999999887652 23 577999
Q ss_pred HHHHHHhccc
Q 020852 187 AHDFLKNSQV 196 (320)
Q Consensus 187 A~~wL~~~Q~ 196 (320)
.++||++.-.
T Consensus 405 ~L~~l~~t~~ 414 (463)
T 3p2c_A 405 CIKMLMDTDA 414 (463)
T ss_dssp HHHHHHHTST
T ss_pred HHHHHHhcCC
Confidence 9999999665
No 104
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=20.27 E-value=2.6e+02 Score=28.46 Aligned_cols=170 Identities=9% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC---cccccc------chHHhhcccccccCC--CcHHHHHHHHHHhhhhhhcCCCceeccC
Q 020852 89 RDKSLKVAMKHINYEDEASR---YITIGC------VEKPLNMLSCWVEDP--NSDYFKKHLARITEYFWVGEDGLRVQSF 157 (320)
Q Consensus 89 r~~Al~~~~~~i~~~~~~t~---~~~~~p------v~~~l~~L~~~~~~p--d~~~v~~~l~~l~~~l~~~~dG~~~q~~ 157 (320)
++++.+.+.+||.......+ -..|-| +...+..+.+....+ +....++-++.|......-....+....
T Consensus 180 a~~a~~ll~dWi~~np~~~g~~~~~~W~~l~~a~Rli~wi~~~~~l~~s~~~t~e~~~~~l~sL~~ha~~L~~~~~~~~~ 259 (702)
T 4fnv_A 180 IQSWIEVYKNWIENNPKPTTGPNTTSWWQLQVSTRIGDQVQLLEYFKNSVNFTPEWLSTFLVEFAEQADFLVDYPYESGG 259 (702)
T ss_dssp HHHHHHHHHHHHHHCCCCSSSCCSSTTCHHHHHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHHHHHHHCCCTTCH
T ss_pred HHHHHHHHHHHHHhCCCcCCCCCccceeHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhhCCccCCC
Q ss_pred CChhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHh---cccCCCCCCCcccccCCCCCCcccccCCCCCCCCCcccHHH
Q 020852 158 GSQTWDCALAVQALLACNLTDEIGPILMKAHDFLKN---SQVTDNPQGDFRSMFRHISKGGWTFSNKDHGWPVSDCSSES 234 (320)
Q Consensus 158 ~s~vWdTa~a~~AL~~aG~~~~~~~~l~kA~~wL~~---~Q~~~~~~Gdw~~~~~~~~~GGW~Fs~~~~~~Pd~D~Ta~a 234 (320)
.-.+|.++-.+.+=...+.-++....+++|.+.|.+ +|+..+ |.+.+..+ .+... ..++-..+
T Consensus 260 Nh~l~~~~aL~~agl~~pe~~~~~~w~~~A~~~L~~el~~Qi~~D--G~~~E~Sp---------~Yh~~---vL~~ll~~ 325 (702)
T 4fnv_A 260 NILISQANALATAGTLMPEFKNAEKWMNTGYQILSEEVQNQIMSD--GWHKEMSL---------HYHIG---IVADFYEA 325 (702)
T ss_dssp HHHHHHHHHHHHHHHHCTTBTTHHHHHHHHHHHHHHHHHHSBCTT--SCBTTCCH---------HHHHH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHhhcCCC--CccccCCH---------HHHHH---HHHHHHHH
Q ss_pred HHHHHHhcC---CCccccCCCCCHHHHHHHHHHHHhcccCCC-------Ccccc
Q 020852 235 FLCCLHLST---MTPEIVGEKMEPERFYDAANFMLSIQVRKQ-------RYRAI 278 (320)
Q Consensus 235 L~AL~~~~~---~~~~~~g~~~~~~~i~rav~wLl~~Qn~dG-------GW~af 278 (320)
...+...+. .|+. -.+++++++++|+.+.-+|| ..+.|
T Consensus 326 ~~la~~~g~~~~~p~~------~~~~L~km~~~l~~l~~PDG~~~g~~~~lp~f 373 (702)
T 4fnv_A 326 MKLAEANQLSSKLPSD------FTEPLRKAAEVVMYFTYPNYFIKGSDNVVPMF 373 (702)
T ss_dssp HHHHHHTTCGGGSCTT------TTHHHHHHHHHHHHTSCGGGGSCCSSCCSCCC
T ss_pred HHHHHHcCCCcCCCHH------HHHHHHHHHHHHHHHcCCCCCccccccccCcc
No 105
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=20.20 E-value=1.5e+02 Score=28.63 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=46.4
Q ss_pred hhccccccc-CCCcHHHHHHHHHHhhhhhhcCCCceecc-----CCC------hhhHHHHHHHHHHHcCCCCCccHHHHH
Q 020852 119 LNMLSCWVE-DPNSDYFKKHLARITEYFWVGEDGLRVQS-----FGS------QTWDCALAVQALLACNLTDEIGPILMK 186 (320)
Q Consensus 119 l~~L~~~~~-~pd~~~v~~~l~~l~~~l~~~~dG~~~q~-----~~s------~vWdTa~a~~AL~~aG~~~~~~~~l~k 186 (320)
|..|-++|+ ++++|.+++-++.|.+- .+--++.+ .|+ .+|=-++++++|... + +..+++
T Consensus 306 LLslPylGf~~~dDpiYqNTrk~IlS~----~NPyy~~G~~~~GIG~PH~~~~~~Wpmsl~~~~lTs~----d-~~Ei~~ 376 (427)
T 3qt9_A 306 LLSIPYLEYKGIEDEVYQNTRKFILSK----NNRFFFEGKAAKGIGSPHTPDQYIWHIALSMQGLTTN----N-QEEIDQ 376 (427)
T ss_dssp STTHHHHTSSCTTCHHHHHHHHHHTST----TSTTEEECSSCEEECCTTSCTTEEEHHHHHHHHHTCC----C-HHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHhcc----cCCceeccCccCcCCCCCCCCCCchHHHHHHHHhhcC----C-HHHHHH
Confidence 444556665 68999999999866542 22222222 233 399999998887633 2 567999
Q ss_pred HHHHHHhccc
Q 020852 187 AHDFLKNSQV 196 (320)
Q Consensus 187 A~~wL~~~Q~ 196 (320)
.++||++.-.
T Consensus 377 ~L~~l~~t~~ 386 (427)
T 3qt9_A 377 LIKLLKETDA 386 (427)
T ss_dssp HHHHHHHTST
T ss_pred HHHHHHhcCC
Confidence 9999999664
Done!