Query 020853
Match_columns 320
No_of_seqs 150 out of 1288
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:41:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05472 cnd41_like Chloroplast 100.0 5.2E-42 1.1E-46 318.3 27.8 239 2-254 46-299 (299)
2 cd05489 xylanase_inhibitor_I_l 100.0 9.4E-42 2E-46 324.2 27.1 246 2-252 81-361 (362)
3 PLN03146 aspartyl protease fam 100.0 2.2E-39 4.8E-44 314.4 27.6 242 2-256 172-430 (431)
4 cd05476 pepsin_A_like_plant Ch 100.0 1E-37 2.2E-42 284.9 23.9 202 2-254 43-265 (265)
5 cd05475 nucellin_like Nucellin 100.0 3.2E-37 6.9E-42 282.8 24.5 210 2-254 52-273 (273)
6 cd05478 pepsin_A Pepsin A, asp 100.0 1.4E-36 3E-41 284.3 22.4 223 2-251 77-317 (317)
7 PTZ00165 aspartyl protease; Pr 100.0 2.4E-36 5.1E-41 295.5 24.2 226 2-258 192-452 (482)
8 cd05474 SAP_like SAPs, pepsin- 100.0 2E-36 4.3E-41 279.8 22.5 225 2-252 42-295 (295)
9 KOG1339 Aspartyl protease [Pos 100.0 7.1E-36 1.5E-40 287.7 26.4 244 1-255 132-397 (398)
10 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-36 6.7E-41 282.8 20.8 227 2-251 75-325 (325)
11 cd05477 gastricsin Gastricsins 100.0 8.8E-36 1.9E-40 278.9 23.6 224 2-252 70-318 (318)
12 cd05486 Cathespin_E Cathepsin 100.0 5.2E-36 1.1E-40 280.3 20.9 226 2-251 67-316 (316)
13 cd05488 Proteinase_A_fungi Fun 100.0 9.5E-36 2.1E-40 279.0 20.9 223 2-251 77-320 (320)
14 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.5E-35 5.5E-40 276.8 22.7 214 2-255 87-326 (326)
15 cd05473 beta_secretase_like Be 100.0 3.1E-35 6.7E-40 280.2 23.5 248 2-258 66-351 (364)
16 cd06098 phytepsin Phytepsin, a 100.0 4.3E-35 9.3E-40 274.2 22.6 215 2-251 78-317 (317)
17 cd05485 Cathepsin_D_like Cathe 100.0 4.6E-35 1E-39 275.4 22.6 227 2-251 80-329 (329)
18 cd05487 renin_like Renin stimu 100.0 2.4E-34 5.3E-39 270.1 23.1 225 2-252 77-326 (326)
19 PTZ00147 plasmepsin-1; Provisi 100.0 8.7E-33 1.9E-37 268.6 22.3 226 2-253 206-450 (453)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 3.9E-32 8.5E-37 263.6 22.5 225 2-253 205-449 (450)
21 cd06097 Aspergillopepsin_like 100.0 3.8E-32 8.2E-37 249.7 19.3 195 2-251 69-278 (278)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.8E-31 3.9E-36 248.4 18.1 227 2-252 69-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 1.1E-30 2.3E-35 239.1 21.1 197 2-251 69-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 1.7E-26 3.6E-31 195.7 14.3 142 107-251 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.4 1.6E-12 3.5E-17 110.4 8.5 81 2-88 81-164 (164)
26 cd05470 pepsin_retropepsin_lik 97.5 0.00013 2.7E-09 57.0 4.4 44 2-51 66-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 95.2 0.099 2.1E-06 42.0 7.5 24 225-248 100-123 (124)
28 TIGR02281 clan_AA_DTGA clan AA 95.1 0.15 3.2E-06 40.9 8.1 36 105-147 9-44 (121)
29 PF08284 RVP_2: Retroviral asp 93.2 0.25 5.4E-06 40.4 6.0 27 225-251 105-131 (135)
30 TIGR03698 clan_AA_DTGF clan AA 91.4 1.5 3.2E-05 34.2 8.1 23 224-246 84-106 (107)
31 PF13650 Asp_protease_2: Aspar 88.5 0.77 1.7E-05 33.7 4.2 29 115-147 3-31 (90)
32 PF09668 Asp_protease: Asparty 86.7 1.9 4.1E-05 34.7 5.6 30 114-147 28-57 (124)
33 PF13975 gag-asp_proteas: gag- 84.1 1.9 4.2E-05 30.9 4.2 30 114-147 12-41 (72)
34 cd05484 retropepsin_like_LTR_2 83.6 2.2 4.7E-05 31.9 4.5 30 114-147 4-33 (91)
35 cd05483 retropepsin_like_bacte 83.3 2.4 5.1E-05 31.4 4.6 30 114-147 6-35 (96)
36 cd06095 RP_RTVL_H_like Retrope 76.6 4.1 8.9E-05 30.2 3.9 29 115-147 3-31 (86)
37 KOG0012 DNA damage inducible p 75.2 48 0.001 31.5 11.1 40 215-254 307-348 (380)
38 PF00077 RVP: Retroviral aspar 68.3 5.4 0.00012 30.1 2.9 26 114-143 9-34 (100)
39 PF12384 Peptidase_A2B: Ty3 tr 65.0 34 0.00073 29.0 7.1 23 126-148 46-68 (177)
40 cd05481 retropepsin_like_LTR_1 61.2 8.6 0.00019 29.1 2.8 31 115-148 3-33 (93)
41 cd06094 RP_Saci_like RP_Saci_l 59.9 73 0.0016 24.1 8.0 19 126-144 10-28 (89)
42 COG3577 Predicted aspartyl pro 58.3 24 0.00053 30.9 5.3 37 104-147 102-138 (215)
43 PF02160 Peptidase_A3: Caulifl 57.6 32 0.0007 30.1 6.0 27 224-251 91-117 (201)
44 COG5550 Predicted aspartyl pro 45.3 17 0.00036 29.2 2.1 20 128-147 29-49 (125)
45 cd00303 retropepsin_like Retro 29.0 90 0.0019 21.0 3.7 23 125-147 9-31 (92)
46 CHL00031 psbT photosystem II p 27.7 59 0.0013 19.6 2.0 16 305-320 7-22 (33)
47 PRK11875 psbT photosystem II r 27.2 61 0.0013 19.3 2.0 16 305-320 7-22 (31)
48 cd06097 Aspergillopepsin_like 25.4 75 0.0016 28.6 3.4 29 113-143 3-31 (278)
49 PRK09784 hypothetical protein; 23.8 1.1E+02 0.0023 27.6 3.8 40 111-150 356-400 (417)
50 cd06096 Plasmepsin_5 Plasmepsi 22.3 81 0.0017 29.3 3.0 30 112-143 5-34 (326)
51 PF01405 PsbT: Photosystem II 20.9 69 0.0015 18.8 1.4 16 305-320 7-22 (29)
52 PF10853 DUF2650: Protein of u 20.3 82 0.0018 19.8 1.7 15 306-320 24-38 (38)
No 1
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.2e-42 Score=318.28 Aligned_cols=239 Identities=29% Similarity=0.497 Sum_probs=196.4
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC---
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS--- 78 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~--- 78 (320)
++|++++|+|+|++.. .++++.|||++.+++.+. ..+||||||+..++++.|+..+ .+++||+||.+
T Consensus 46 ~~G~~~~D~v~ig~~~-----~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L~~~~~ 115 (299)
T cd05472 46 TTGDLATDTLTLGSSD-----VVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTASS--YGGVFSYCLPDRSS 115 (299)
T ss_pred EEEEEEEEEEEeCCCC-----ccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhHh--hcCceEEEccCCCC
Confidence 4799999999999762 378999999998877653 4699999999999999998764 36899999986
Q ss_pred CCCeeEEECCCCC--CCCeeeeCccCCC-CCeEEEEEEEEEECCeeeecc------cceEEccccceeeechHHHHHHHH
Q 020853 79 DGTGRISFGDKGS--PGQGETPFSLRQT-HPTYNITITQVSVGGNAVNFE------FSAIFDSGTSFTYLNDPAYTQISE 149 (320)
Q Consensus 79 ~~~G~i~fG~~d~--~~~~~tpl~~~~~-~~~y~V~l~~i~v~g~~~~~~------~~~iiDSGTt~~~lp~~~y~~l~~ 149 (320)
...|+|+||++|+ .++.|+|++.++. ..+|.|++++|+|+++.+..+ ..+||||||++++||+++|++|.+
T Consensus 116 ~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~ 195 (299)
T cd05472 116 SSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRD 195 (299)
T ss_pred CCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHH
Confidence 3579999999998 4899999987543 358999999999999988652 479999999999999999999999
Q ss_pred HHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeC---CCce
Q 020853 150 TFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS---DNVN 226 (320)
Q Consensus 150 ~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~---~~~~ 226 (320)
++.++....... .....++.||+.+. .....+|+|+|+|+++..++|++++|++.....+ .+|+++... .+.+
T Consensus 196 ~l~~~~~~~~~~-~~~~~~~~C~~~~~-~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~--~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 196 AFRAAMAAYPRA-PGFSILDTCYDLSG-FRSVSVPTVSLHFQGGADVELDASGVLYPVDDSS--QVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHhccCCCC-CCCCCCCccCcCCC-CcCCccCCEEEEECCCCEEEeCcccEEEEecCCC--CEEEEEeCCCCCCCCE
Confidence 998876432211 11223446998753 3346899999999768999999998877433333 689988765 2479
Q ss_pred eecHhhhceeEEEEeCCCCEEEEEeCCC
Q 020853 227 IIGQNFMTGYNIVFDREKNVLGWKASDC 254 (320)
Q Consensus 227 IlG~~fl~~~yvvfD~e~~riGfa~~~c 254 (320)
|||+.|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=9.4e-42 Score=324.19 Aligned_cols=246 Identities=25% Similarity=0.400 Sum_probs=196.3
Q ss_pred ceeEEEEEEEEeecCCCCc--cccccceEEeeeeeccC-ccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC
Q 020853 2 STGFLVEDVLHLATDEKQS--KSVDSRISFGCGRVQTG-SFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS 78 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~--~~~~~~~~FGc~~~~~g-~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~ 78 (320)
++|+|++|+|+|+..++.. ...++++.|||++.+.. .+.. +.+||||||++++|++.||..++..+++||+||.+
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~--~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~ 158 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPP--GAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPS 158 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCcc--ccccccccCCCccchHHHhhhhcCCCcceEEEeCC
Confidence 6899999999998654321 12578999999988642 2221 36999999999999999998866567899999986
Q ss_pred --CCCeeEEECCCCC----------CCCeeeeCccCCC-CCeEEEEEEEEEECCeeeecc-----------cceEEcccc
Q 020853 79 --DGTGRISFGDKGS----------PGQGETPFSLRQT-HPTYNITITQVSVGGNAVNFE-----------FSAIFDSGT 134 (320)
Q Consensus 79 --~~~G~i~fG~~d~----------~~~~~tpl~~~~~-~~~y~V~l~~i~v~g~~~~~~-----------~~~iiDSGT 134 (320)
...|+|+||+.++ ..+.|+||+.++. ..+|.|++++|+||++.+.++ .++||||||
T Consensus 159 ~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGT 238 (362)
T cd05489 159 SPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVV 238 (362)
T ss_pred CCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCC
Confidence 3589999999874 4789999987643 368999999999999988653 379999999
Q ss_pred ceeeechHHHHHHHHHHHHhhhccccCCCCCCCcceeeecCCC---CCCccCceEEEEEcC-CceEEEcCCeeEEEeCCC
Q 020853 135 SFTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPN---QTNFEYPVVNLTMKG-GGPFFVNDPIVIVSSEPK 210 (320)
Q Consensus 135 t~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~---~~~~~~P~i~l~f~g-g~~~~i~~~~~~~~~~~~ 210 (320)
++++||+++|++|.++|.+++...+........++.||..... .....+|.|+|+|.| |.+|+|++++|++...+
T Consensus 239 s~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~- 317 (362)
T cd05489 239 PYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG- 317 (362)
T ss_pred ceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC-
Confidence 9999999999999999998876433211111123689986421 124689999999987 79999999999886543
Q ss_pred CeeEEEEEEEeCC----CceeecHhhhceeEEEEeCCCCEEEEEeC
Q 020853 211 GLYLYCLGVVKSD----NVNIIGQNFMTGYNIVFDREKNVLGWKAS 252 (320)
Q Consensus 211 ~~~~~Clg~~~~~----~~~IlG~~fl~~~yvvfD~e~~riGfa~~ 252 (320)
+ .+|++++..+ +.||||+.|||++|+|||++++|||||++
T Consensus 318 ~--~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 318 G--VACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred C--cEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 3 6899998653 37999999999999999999999999975
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=314.40 Aligned_cols=242 Identities=24% Similarity=0.468 Sum_probs=196.7
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC---
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS--- 78 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~--- 78 (320)
+.|++++|+|+|++...+ ...++++.|||++.+.+.|.. ..+||||||+..+|+++||... +.++|||||.+
T Consensus 172 ~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~ 246 (431)
T PLN03146 172 TKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSS 246 (431)
T ss_pred eeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccC--CCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCC
Confidence 479999999999875321 235789999999988877643 3689999999999999999753 45699999974
Q ss_pred --CCCeeEEECCCCC---CCCeeeeCccCCCCCeEEEEEEEEEECCeeeecc---------cceEEccccceeeechHHH
Q 020853 79 --DGTGRISFGDKGS---PGQGETPFSLRQTHPTYNITITQVSVGGNAVNFE---------FSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 79 --~~~G~i~fG~~d~---~~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~---------~~~iiDSGTt~~~lp~~~y 144 (320)
...|.|+||+... ..+.|+|++.+....+|.|++++|+||++.+.++ ..+||||||++++||+++|
T Consensus 247 ~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y 326 (431)
T PLN03146 247 DSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFY 326 (431)
T ss_pred CCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHH
Confidence 2479999998542 2488999986544468999999999999988753 2689999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeCCC
Q 020853 145 TQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDN 224 (320)
Q Consensus 145 ~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~~ 224 (320)
++|+++|.+++...... +....++.||... ....+|+|+|+|+ |..+.+++.++++....+ .+|+++....+
T Consensus 327 ~~l~~~~~~~~~~~~~~-~~~~~~~~C~~~~---~~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~---~~Cl~~~~~~~ 398 (431)
T PLN03146 327 SELESAVEEAIGGERVS-DPQGLLSLCYSST---SDIKLPIITAHFT-GADVKLQPLNTFVKVSED---LVCFAMIPTSS 398 (431)
T ss_pred HHHHHHHHHHhccccCC-CCCCCCCccccCC---CCCCCCeEEEEEC-CCeeecCcceeEEEcCCC---cEEEEEecCCC
Confidence 99999999988643321 2233467899853 2257999999996 889999988887765433 68999987667
Q ss_pred ceeecHhhhceeEEEEeCCCCEEEEEeCCCCC
Q 020853 225 VNIIGQNFMTGYNIVFDREKNVLGWKASDCYG 256 (320)
Q Consensus 225 ~~IlG~~fl~~~yvvfD~e~~riGfa~~~c~~ 256 (320)
.+|||+.|||++|||||++++||||++.+|..
T Consensus 399 ~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 399 IAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred ceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 89999999999999999999999999999964
No 4
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1e-37 Score=284.85 Aligned_cols=202 Identities=29% Similarity=0.555 Sum_probs=173.5
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC---
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS--- 78 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~--- 78 (320)
.+|++++|+|+|++.+ ..++++.|||++.+.+ +. ....+||||||+...|++.||++++ ++||+||.+
T Consensus 43 ~~G~~~~D~v~~g~~~----~~~~~~~Fg~~~~~~~-~~-~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~~~~~ 113 (265)
T cd05476 43 TSGVLATETFTFGDSS----VSVPNVAFGCGTDNEG-GS-FGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLVPHDD 113 (265)
T ss_pred eeeeEEEEEEEecCCC----CccCCEEEEecccccC-Cc-cCCCCEEEECCCCcccHHHHhhccc---CeeEEEccCCCC
Confidence 5799999999999862 1378999999999876 33 3357999999999999999999887 899999986
Q ss_pred -CCCeeEEECCCCC---CCCeeeeCccCC-CCCeEEEEEEEEEECCeeeec-----------ccceEEccccceeeechH
Q 020853 79 -DGTGRISFGDKGS---PGQGETPFSLRQ-THPTYNITITQVSVGGNAVNF-----------EFSAIFDSGTSFTYLNDP 142 (320)
Q Consensus 79 -~~~G~i~fG~~d~---~~~~~tpl~~~~-~~~~y~V~l~~i~v~g~~~~~-----------~~~~iiDSGTt~~~lp~~ 142 (320)
+..|+|+||++|+ .++.|+|++.++ ...+|.|++++|+|+++.+.+ ...+||||||++++||++
T Consensus 114 ~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 114 TGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 3579999999998 489999998753 246899999999999988752 357999999999999998
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeC
Q 020853 143 AYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS 222 (320)
Q Consensus 143 ~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~ 222 (320)
+| |.++|+|.++.+|.+++++|++..... .+|+++...
T Consensus 194 ~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~---~~C~~~~~~ 231 (265)
T cd05476 194 AY---------------------------------------PDLTLHFDGGADLELPPENYFVDVGEG---VVCLAILSS 231 (265)
T ss_pred cc---------------------------------------CCEEEEECCCCEEEeCcccEEEECCCC---CEEEEEecC
Confidence 87 679999976899999999887754333 689999876
Q ss_pred --CCceeecHhhhceeEEEEeCCCCEEEEEeCCC
Q 020853 223 --DNVNIIGQNFMTGYNIVFDREKNVLGWKASDC 254 (320)
Q Consensus 223 --~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~c 254 (320)
.+.+|||++|||++|+|||++++|||||+++|
T Consensus 232 ~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 232 SSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 45899999999999999999999999999999
No 5
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.2e-37 Score=282.82 Aligned_cols=210 Identities=35% Similarity=0.624 Sum_probs=173.7
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccC-CCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecCCC
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFL-DGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSDG 80 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~-~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~~~ 80 (320)
++|.+++|+|+|+..++ .....++.|||+..+.+.+. ...+.+||||||+..+++++||+++++++++||+||.++.
T Consensus 52 ~~G~~~~D~v~~~~~~~--~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~~ 129 (273)
T cd05475 52 SMGVLVTDIFSLKLTNG--SRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSNG 129 (273)
T ss_pred eEEEEEEEEEEEeecCC--CcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCCC
Confidence 68999999999976432 12468899999988766432 2335799999999999999999999988899999999766
Q ss_pred CeeEEECCCCC--CCCeeeeCccCCCCCeEEEEEEEEEECCeeeec-ccceEEccccceeeechHHHHHHHHHHHHhhhc
Q 020853 81 TGRISFGDKGS--PGQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLNDPAYTQISETFNSLAKE 157 (320)
Q Consensus 81 ~G~i~fG~~d~--~~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~-~~~~iiDSGTt~~~lp~~~y~~l~~~i~~~~~~ 157 (320)
.|.|+||+... .++.|+|+..++...+|.|++.+|+|+++.+.. ...+||||||++++||+++|
T Consensus 130 ~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------------- 196 (273)
T cd05475 130 GGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------------- 196 (273)
T ss_pred CeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-------------
Confidence 79999996533 379999998754446899999999999986543 35799999999999999876
Q ss_pred cccCCCCCCCcceeeecCCCCCCccCceEEEEEcCC---ceEEEcCCeeEEEeCCCCeeEEEEEEEeCC-----Cceeec
Q 020853 158 KRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGG---GPFFVNDPIVIVSSEPKGLYLYCLGVVKSD-----NVNIIG 229 (320)
Q Consensus 158 ~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg---~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~-----~~~IlG 229 (320)
+|+++|+|+++ ++++|++++|++..... ..|++++... +.||||
T Consensus 197 -------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~---~~Cl~~~~~~~~~~~~~~ilG 248 (273)
T cd05475 197 -------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKG---NVCLGILNGSEIGLGNTNIIG 248 (273)
T ss_pred -------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCC---CEEEEEecCCCcCCCceEEEC
Confidence 47799999654 79999999888764433 5799887542 379999
Q ss_pred HhhhceeEEEEeCCCCEEEEEeCCC
Q 020853 230 QNFMTGYNIVFDREKNVLGWKASDC 254 (320)
Q Consensus 230 ~~fl~~~yvvfD~e~~riGfa~~~c 254 (320)
+.|||++|+|||++++|||||+.+|
T Consensus 249 ~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 249 DISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ceEEEeeEEEEECcCCEeCcccCCC
Confidence 9999999999999999999999999
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.4e-36 Score=284.27 Aligned_cols=223 Identities=24% Similarity=0.368 Sum_probs=180.9
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|+|++++.. ++++.|||++.+.+.+......+||||||++.. +++.+|+++|+| +++||+
T Consensus 77 ~~G~~~~D~v~ig~~~------i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~ 150 (317)
T cd05478 77 MTGILGYDTVQVGGIS------DTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSV 150 (317)
T ss_pred EEEEEeeeEEEECCEE------ECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEE
Confidence 5799999999999863 789999999887776544445799999998753 588999999999 799999
Q ss_pred eecCC--CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec--ccceEEccccceeeechHHHHH
Q 020853 75 CFGSD--GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDSGTSFTYLNDPAYTQ 146 (320)
Q Consensus 75 cl~~~--~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~--~~~~iiDSGTt~~~lp~~~y~~ 146 (320)
||.++ ..|+|+||++|++ +++|+|+.. ..+|.|.+++|.|+++.+.. +..+||||||++++||+++|++
T Consensus 151 ~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~---~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~ 227 (317)
T cd05478 151 YLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA---ETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIAN 227 (317)
T ss_pred EeCCCCCCCeEEEEcccCHHHccCceEEEECCC---CcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhCCHHHHHH
Confidence 99973 4699999999864 799999853 46899999999999998864 3579999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEE-EEeCC--
Q 020853 147 ISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLG-VVKSD-- 223 (320)
Q Consensus 147 l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg-~~~~~-- 223 (320)
|.+++...... . ......|+. ...+|.++|+| +|..++|+++.|+... . .+|++ +...+
T Consensus 228 l~~~~~~~~~~-----~-~~~~~~C~~------~~~~P~~~f~f-~g~~~~i~~~~y~~~~--~---~~C~~~~~~~~~~ 289 (317)
T cd05478 228 IQSDIGASQNQ-----N-GEMVVNCSS------ISSMPDVVFTI-NGVQYPLPPSAYILQD--Q---GSCTSGFQSMGLG 289 (317)
T ss_pred HHHHhCCcccc-----C-CcEEeCCcC------cccCCcEEEEE-CCEEEEECHHHheecC--C---CEEeEEEEeCCCC
Confidence 99888543210 1 111124643 34689999999 6899999998877643 2 47984 55433
Q ss_pred CceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 224 NVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 224 ~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
+.||||+.|||++|+|||++++|||||+
T Consensus 290 ~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 290 ELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CeEEechHHhcceEEEEeCCCCEEeecC
Confidence 4799999999999999999999999986
No 7
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.4e-36 Score=295.55 Aligned_cols=226 Identities=19% Similarity=0.318 Sum_probs=182.8
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC---------ChHHHHHhcCCC-CCe
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------SVPSILANQGLI-PNS 71 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~---------s~~~~L~~~g~i-~~~ 71 (320)
.+|.+++|+|++++. .++++.|||++.+.+......+.|||||||++.+ +++.+|+++|++ +++
T Consensus 192 ~~G~l~~DtV~ig~l------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~ 265 (482)
T PTZ00165 192 CVLALGKDTVKIGGL------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNI 265 (482)
T ss_pred EEEEEEEEEEEECCE------EEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccce
Confidence 579999999999886 4889999999987653223345799999998763 577899999999 899
Q ss_pred eEEeecC--CCCeeEEECCCCCC------CCeeeeCccCCCCCeEEEEEEEEEECCeeeec---ccceEEccccceeeec
Q 020853 72 FSMCFGS--DGTGRISFGDKGSP------GQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIFDSGTSFTYLN 140 (320)
Q Consensus 72 FS~cl~~--~~~G~i~fG~~d~~------~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~---~~~~iiDSGTt~~~lp 140 (320)
||+||.+ +.+|+|+||++|+. ++.|+|+.. ..+|.|.+++|.|+++.+.. ...+|+||||+++++|
T Consensus 266 FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~---~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP 342 (482)
T PTZ00165 266 FSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS---TDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGP 342 (482)
T ss_pred EEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc---cceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCC
Confidence 9999986 35799999999863 589999964 46899999999999987754 3579999999999999
Q ss_pred hHHHHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcC--C--ceEEEcCCeeEEEe---CCCCee
Q 020853 141 DPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKG--G--GPFFVNDPIVIVSS---EPKGLY 213 (320)
Q Consensus 141 ~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~g--g--~~~~i~~~~~~~~~---~~~~~~ 213 (320)
+++|++|.+++... ..|... ..+|+++|+|.| | .+|.++++.|++.. ....
T Consensus 343 ~~~~~~i~~~i~~~--------------~~C~~~------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~-- 400 (482)
T PTZ00165 343 SSVINPLLEKIPLE--------------EDCSNK------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQE-- 400 (482)
T ss_pred HHHHHHHHHHcCCc--------------cccccc------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCC--
Confidence 99999998877432 158642 568999999953 2 27899888887763 2222
Q ss_pred EEEE-EEEeC------CCceeecHhhhceeEEEEeCCCCEEEEEeCCCCCCC
Q 020853 214 LYCL-GVVKS------DNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVN 258 (320)
Q Consensus 214 ~~Cl-g~~~~------~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~c~~~~ 258 (320)
.+|+ +++.. ++.||||++|||+||+|||++++|||||+++|...+
T Consensus 401 ~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~ 452 (482)
T PTZ00165 401 HQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSG 452 (482)
T ss_pred CeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCC
Confidence 5796 67642 247999999999999999999999999999987665
No 8
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2e-36 Score=279.82 Aligned_cols=225 Identities=23% Similarity=0.409 Sum_probs=182.1
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC-----------ChHHHHHhcCCC-C
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT-----------SVPSILANQGLI-P 69 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~-----------s~~~~L~~~g~i-~ 69 (320)
++|.+++|+|+|++.. +.++.|||++... ..+||||||+... +++.+|+++|++ +
T Consensus 42 ~~G~~~~D~v~~g~~~------~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~ 108 (295)
T cd05474 42 ASGTWGTDTVSIGGAT------VKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKK 108 (295)
T ss_pred EEEEEEEEEEEECCeE------ecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccc
Confidence 6899999999999863 7889999998732 2589999998875 799999999999 7
Q ss_pred CeeEEeecC--CCCeeEEECCCCCC----CCeeeeCccCCC---CCeEEEEEEEEEECCeeee-----cccceEEccccc
Q 020853 70 NSFSMCFGS--DGTGRISFGDKGSP----GQGETPFSLRQT---HPTYNITITQVSVGGNAVN-----FEFSAIFDSGTS 135 (320)
Q Consensus 70 ~~FS~cl~~--~~~G~i~fG~~d~~----~~~~tpl~~~~~---~~~y~V~l~~i~v~g~~~~-----~~~~~iiDSGTt 135 (320)
++||+||.+ +..|.|+||++|++ +++|+|+..... ..+|.|.+++|.|+++.+. .+..++|||||+
T Consensus 109 ~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~ 188 (295)
T cd05474 109 NAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTT 188 (295)
T ss_pred eEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCc
Confidence 999999997 36899999999865 789999987542 2689999999999988753 245899999999
Q ss_pred eeeechHHHHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCC-CCeeE
Q 020853 136 FTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEP-KGLYL 214 (320)
Q Consensus 136 ~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~-~~~~~ 214 (320)
+++||+++|++|.+++.++.... .......|+.. .. |.|+|+| +|.+++|+++.|++.... .....
T Consensus 189 ~~~lP~~~~~~l~~~~~~~~~~~-----~~~~~~~C~~~------~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~ 255 (295)
T cd05474 189 LTYLPSDIVDAIAKQLGATYDSD-----EGLYVVDCDAK------DD-GSLTFNF-GGATISVPLSDLVLPASTDDGGDG 255 (295)
T ss_pred cEeCCHHHHHHHHHHhCCEEcCC-----CcEEEEeCCCC------CC-CEEEEEE-CCeEEEEEHHHhEeccccCCCCCC
Confidence 99999999999999997664321 11223467542 23 9999999 579999998887776532 00125
Q ss_pred EE-EEEEeCC-CceeecHhhhceeEEEEeCCCCEEEEEeC
Q 020853 215 YC-LGVVKSD-NVNIIGQNFMTGYNIVFDREKNVLGWKAS 252 (320)
Q Consensus 215 ~C-lg~~~~~-~~~IlG~~fl~~~yvvfD~e~~riGfa~~ 252 (320)
+| +++...+ +.||||+.|||++|++||.+++|||||++
T Consensus 256 ~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 256 ACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 68 4777665 68999999999999999999999999985
No 9
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=287.66 Aligned_cols=244 Identities=30% Similarity=0.489 Sum_probs=197.1
Q ss_pred CceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecCC-
Q 020853 1 MSTGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGSD- 79 (320)
Q Consensus 1 ~ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~~- 79 (320)
+++|+|++|+|+|++.+ ...+++++|||++.+.+.+....+.+||||||+..+++++|+...+...++||+||.++
T Consensus 132 ~~~G~l~~Dtv~~~~~~---~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~ 208 (398)
T KOG1339|consen 132 STSGYLATDTVTFGGTT---SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNG 208 (398)
T ss_pred ceeEEEEEEEEEEcccc---ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeEEEEeCCCC
Confidence 47899999999999953 12467899999999987521115689999999999999999998776667999999983
Q ss_pred ----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCee------eecc-cceEEccccceeeechHHH
Q 020853 80 ----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNA------VNFE-FSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 80 ----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~------~~~~-~~~iiDSGTt~~~lp~~~y 144 (320)
..|.|.||+.|+. .+.|+||..+.. .+|+|.+.+|.|+++. ...+ .++|+||||++++||+++|
T Consensus 209 ~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~-~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y 287 (398)
T KOG1339|consen 209 SPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS-TYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSGTSLTYLPTSAY 287 (398)
T ss_pred CCCCCCcEEEECCCcccCcCCceEEEeeccCCC-ccEEEEEeEEEECCccCCCcceEecCCCCEEEECCcceeeccHHHH
Confidence 3799999999986 578999987554 5899999999999843 2222 6799999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeCC-
Q 020853 145 TQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD- 223 (320)
Q Consensus 145 ~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~- 223 (320)
++|.++|.+++.. ......+++.||...... ..+|.|+|+|.+|+.|.+++++|++...... ..|++++...
T Consensus 288 ~~i~~~~~~~~~~---~~~~~~~~~~C~~~~~~~--~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~--~~Cl~~~~~~~ 360 (398)
T KOG1339|consen 288 NALREAIGAEVSV---VGTDGEYFVPCFSISTSG--VKLPDITFHFGGGAVFSLPPKNYLVEVSDGG--GVCLAFFNGMD 360 (398)
T ss_pred HHHHHHHHhheec---cccCCceeeecccCCCCc--ccCCcEEEEECCCcEEEeCccceEEEECCCC--CceeeEEecCC
Confidence 9999999987511 011123466899875321 4599999999779999999999888765443 1299887653
Q ss_pred --CceeecHhhhceeEEEEeCC-CCEEEEEe--CCCC
Q 020853 224 --NVNIIGQNFMTGYNIVFDRE-KNVLGWKA--SDCY 255 (320)
Q Consensus 224 --~~~IlG~~fl~~~yvvfD~e-~~riGfa~--~~c~ 255 (320)
..||||+.||++++++||.. ++||||++ ..|.
T Consensus 361 ~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 361 SGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 37999999999999999999 99999999 6774
No 10
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-36 Score=282.75 Aligned_cols=227 Identities=22% Similarity=0.342 Sum_probs=178.5
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FS~ 74 (320)
++|.+++|+|+|++.. ++++.|||++.+.+........+||||||++.. +++++|+++|++ +++||+
T Consensus 75 ~~G~~~~D~v~~g~~~------~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~ 148 (325)
T cd05490 75 LSGYLSQDTVSIGGLQ------VEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSF 148 (325)
T ss_pred EEEEEeeeEEEECCEE------EcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEE
Confidence 5799999999999863 789999999988763222234799999998764 466799999998 899999
Q ss_pred eecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec--ccceEEccccceeeechHHH
Q 020853 75 CFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 75 cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~--~~~~iiDSGTt~~~lp~~~y 144 (320)
||.++ ..|+|+||++|++ ++.|+|+.. ..+|.|++++|.|+++.... ...+||||||+++++|+++|
T Consensus 149 ~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGTt~~~~p~~~~ 225 (325)
T cd05490 149 YLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR---KAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGTSLITGPVEEV 225 (325)
T ss_pred EEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc---ceEEEEEeeEEEECCeeeecCCCCEEEECCCCccccCCHHHH
Confidence 99862 3699999999874 789999853 46899999999998875432 35799999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC-
Q 020853 145 TQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS- 222 (320)
Q Consensus 145 ~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~- 222 (320)
++|.+++.+.. . .. ......|+. ...+|.|+|+| +|+.++|++++|++.....+ ..+|+ +++..
T Consensus 226 ~~l~~~~~~~~----~-~~-~~~~~~C~~------~~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~-~~~C~~~~~~~~ 291 (325)
T cd05490 226 RALQKAIGAVP----L-IQ-GEYMIDCEK------IPTLPVISFSL-GGKVYPLTGEDYILKVSQRG-TTICLSGFMGLD 291 (325)
T ss_pred HHHHHHhCCcc----c-cC-CCEEecccc------cccCCCEEEEE-CCEEEEEChHHeEEeccCCC-CCEEeeEEEECC
Confidence 99998885421 1 01 112335653 35689999999 68999999988877643221 15797 45431
Q ss_pred -----CCceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 223 -----DNVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 223 -----~~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+.||||+.|||++|+|||++++|||||+
T Consensus 292 ~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 292 IPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 24799999999999999999999999985
No 11
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=8.8e-36 Score=278.89 Aligned_cols=224 Identities=21% Similarity=0.359 Sum_probs=179.5
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCC------CChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~------~s~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|+++|++. .++++.|||++...+......+.+||||||++. .+++.+|+++|.+ +++||+
T Consensus 70 ~~G~~~~D~i~~g~~------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~ 143 (318)
T cd05477 70 LTGIFGYDTVTVQGI------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSF 143 (318)
T ss_pred EEEEEEeeEEEECCE------EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEE
Confidence 579999999999876 378999999998765322223469999999863 5789999999999 899999
Q ss_pred eecCC---CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec---ccceEEccccceeeechHHH
Q 020853 75 CFGSD---GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF---EFSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 75 cl~~~---~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~---~~~~iiDSGTt~~~lp~~~y 144 (320)
||.++ ..|.|+||++|++ ++.|+|+.. ..+|.|.+++|.|+++.+.. +..+||||||++++||+++|
T Consensus 144 ~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~ 220 (318)
T cd05477 144 YLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS---ETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVM 220 (318)
T ss_pred EEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC---ceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHH
Confidence 99973 4699999999865 699999863 46899999999999988753 34799999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC-
Q 020853 145 TQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS- 222 (320)
Q Consensus 145 ~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~- 222 (320)
++|++.+.++.... ......|. ....+|.++|+| ++.++.|+++.|+... . .+|+ ++...
T Consensus 221 ~~l~~~~~~~~~~~------~~~~~~C~------~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~---~~C~~~i~~~~ 282 (318)
T cd05477 221 STLMQSIGAQQDQY------GQYVVNCN------NIQNLPTLTFTI-NGVSFPLPPSAYILQN--N---GYCTVGIEPTY 282 (318)
T ss_pred HHHHHHhCCccccC------CCEEEeCC------ccccCCcEEEEE-CCEEEEECHHHeEecC--C---CeEEEEEEecc
Confidence 99999886553210 11122454 335689999999 5899999988877643 2 4686 77532
Q ss_pred ------CCceeecHhhhceeEEEEeCCCCEEEEEeC
Q 020853 223 ------DNVNIIGQNFMTGYNIVFDREKNVLGWKAS 252 (320)
Q Consensus 223 ------~~~~IlG~~fl~~~yvvfD~e~~riGfa~~ 252 (320)
.+.||||+.|||++|+|||++++|||||++
T Consensus 283 ~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 283 LPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred cCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 137999999999999999999999999974
No 12
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.2e-36 Score=280.26 Aligned_cols=226 Identities=22% Similarity=0.344 Sum_probs=178.3
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|+|++++. .+.++.|||+..+.+........+||||||++.. ++.++|+++|++ +++||+
T Consensus 67 ~~G~~~~D~v~ig~~------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~ 140 (316)
T cd05486 67 LTGIIGIDQVTVEGI------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSV 140 (316)
T ss_pred EEEEeeecEEEECCE------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEE
Confidence 579999999999875 3789999999877664323335799999998764 457899999998 789999
Q ss_pred eecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec--ccceEEccccceeeechHHH
Q 020853 75 CFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF--EFSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 75 cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~--~~~~iiDSGTt~~~lp~~~y 144 (320)
||.++ ..|+|+||++|++ ++.|+|+.. ..+|.|.+++|+|+++.+.. ...+||||||++++||++++
T Consensus 141 ~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~---~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~ 217 (316)
T cd05486 141 YMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV---QGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGDI 217 (316)
T ss_pred EEccCCCCCCCcEEEEcccCHHHcccceEEEECCC---ceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHHH
Confidence 99862 4799999999975 799999863 46899999999999987654 35799999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC-
Q 020853 145 TQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS- 222 (320)
Q Consensus 145 ~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~- 222 (320)
++|.+.+.+.. .+.. ....|.. ...+|+|+|+| +|+.++|+++.|++.....+ ..+|+ +++..
T Consensus 218 ~~l~~~~~~~~------~~~~-~~~~C~~------~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~-~~~C~~~~~~~~ 282 (316)
T cd05486 218 KQLQNYIGATA------TDGE-YGVDCST------LSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDG-GGYCSSGFQGLD 282 (316)
T ss_pred HHHHHHhCCcc------cCCc-EEEeccc------cccCCCEEEEE-CCEEEEeCHHHeEEecccCC-CCEEeeEEEECC
Confidence 99988774321 1111 1225643 35689999999 68999999988877642211 15797 55432
Q ss_pred -----CCceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 223 -----DNVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 223 -----~~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+.||||+.|||++|+|||.+++|||||+
T Consensus 283 ~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 283 IPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 23799999999999999999999999986
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.5e-36 Score=278.97 Aligned_cols=223 Identities=19% Similarity=0.312 Sum_probs=176.6
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCC------hHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s------~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|++++++.. ++++.|||++.+.+........+||||||++..+ ...+|+++|+| +++||+
T Consensus 77 ~~G~~~~D~v~ig~~~------~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~ 150 (320)
T cd05488 77 LEGFVSQDTLSIGDLT------IKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSF 150 (320)
T ss_pred EEEEEEEeEEEECCEE------ECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEE
Confidence 5799999999998763 7899999998876653233346999999998754 34578899999 899999
Q ss_pred eecC--CCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec-ccceEEccccceeeechHHHHHH
Q 020853 75 CFGS--DGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 75 cl~~--~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~-~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
||.+ ...|.|+||++|++ ++.|+|+.. ..+|.|.+++|+||++.+.. ...++|||||++++||++++++|
T Consensus 151 ~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l 227 (320)
T cd05488 151 YLGSSEEDGGEATFGGIDESRFTGKITWLPVRR---KAYWEVELEKIGLGDEELELENTGAAIDTGTSLIALPSDLAEML 227 (320)
T ss_pred EecCCCCCCcEEEECCcCHHHcCCceEEEeCCc---CcEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCCHHHHHHH
Confidence 9997 35799999999874 799999963 46899999999999988765 46899999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeC-----
Q 020853 148 SETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS----- 222 (320)
Q Consensus 148 ~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~----- 222 (320)
.+.+.+... .... ....|.. ...+|.|+|+| +|+++.|++++|++.. . .+|++.+..
T Consensus 228 ~~~~~~~~~-----~~~~-~~~~C~~------~~~~P~i~f~f-~g~~~~i~~~~y~~~~--~---g~C~~~~~~~~~~~ 289 (320)
T cd05488 228 NAEIGAKKS-----WNGQ-YTVDCSK------VDSLPDLTFNF-DGYNFTLGPFDYTLEV--S---GSCISAFTGMDFPE 289 (320)
T ss_pred HHHhCCccc-----cCCc-EEeeccc------cccCCCEEEEE-CCEEEEECHHHheecC--C---CeEEEEEEECcCCC
Confidence 887743321 0101 1124543 35789999999 5899999998887632 2 369854432
Q ss_pred --CCceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 223 --DNVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 223 --~~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+.||||+.|||++|+|||.+++|||||+
T Consensus 290 ~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 290 PVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 23799999999999999999999999986
No 14
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.5e-35 Score=276.82 Aligned_cols=214 Identities=21% Similarity=0.381 Sum_probs=170.7
Q ss_pred ceeEEEEEEEEeecCCCCc-cccccceEEeeeeeccCccCCCCCCceEeeeCCCCC----ChHHHHHhcCCC-C--CeeE
Q 020853 2 STGFLVEDVLHLATDEKQS-KSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT----SVPSILANQGLI-P--NSFS 73 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~-~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~----s~~~~L~~~g~i-~--~~FS 73 (320)
+.|.+++|+|+|++..... .....++.|||+..+.+.|... ..+||||||+... +...+|.+++.+ . ++||
T Consensus 87 ~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS 165 (326)
T cd06096 87 ISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFS 165 (326)
T ss_pred eeeEEEEEEEEeccCCCCccccccccEEeccCccccCccccc-ccceEEEccCCcccccCchhHHHHHhcccccCCceEE
Confidence 5799999999999764210 0112468899999988877544 4699999999864 223345555554 3 8999
Q ss_pred EeecCCCCeeEEECCCCC--------------CCCeeeeCccCCCCCeEEEEEEEEEECCee--e--ecccceEEccccc
Q 020853 74 MCFGSDGTGRISFGDKGS--------------PGQGETPFSLRQTHPTYNITITQVSVGGNA--V--NFEFSAIFDSGTS 135 (320)
Q Consensus 74 ~cl~~~~~G~i~fG~~d~--------------~~~~~tpl~~~~~~~~y~V~l~~i~v~g~~--~--~~~~~~iiDSGTt 135 (320)
+||.+ ..|+|+||++|+ .++.|+|+.. ..+|.|.+++|+|+++. . ..+..+||||||+
T Consensus 166 ~~l~~-~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~---~~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs 241 (326)
T cd06096 166 ICLSE-DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR---KYYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGST 241 (326)
T ss_pred EEEcC-CCeEEEECccChhhhcccccccccccCCceEEeccC---CceEEEEEEEEEEcccccceecccCCCEEEeCCCC
Confidence 99996 679999999985 3578999864 26899999999999875 2 2356899999999
Q ss_pred eeeechHHHHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEE
Q 020853 136 FTYLNDPAYTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLY 215 (320)
Q Consensus 136 ~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~ 215 (320)
+++||+++|++|.+++ |+|+|+|++|.++++++++|++..... .+
T Consensus 242 ~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p~~y~~~~~~~---~c 286 (326)
T cd06096 242 LSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKPSSYLYKKESF---WC 286 (326)
T ss_pred cccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECHHHhccccCCc---eE
Confidence 9999999999988766 779999976899999988887764433 45
Q ss_pred EEEEEeCCCceeecHhhhceeEEEEeCCCCEEEEEeCCCC
Q 020853 216 CLGVVKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCY 255 (320)
Q Consensus 216 Clg~~~~~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~c~ 255 (320)
|+++....+.+|||++|||++|+|||++++|||||+++|.
T Consensus 287 ~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 287 KGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 6676666679999999999999999999999999999994
No 15
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=3.1e-35 Score=280.18 Aligned_cols=248 Identities=21% Similarity=0.309 Sum_probs=182.5
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC--------ChHHHHHhcCCCCCeeE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT--------SVPSILANQGLIPNSFS 73 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~--------s~~~~L~~~g~i~~~FS 73 (320)
.+|.+++|+|+|++..+ ..-.+.|++.+...+.|......+||||||++.+ ++..+|.+++.++++||
T Consensus 66 ~~G~~~~D~v~ig~~~~----~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS 141 (364)
T cd05473 66 WEGELGTDLVSIPKGPN----VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFS 141 (364)
T ss_pred EEEEEEEEEEEECCCCc----cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceE
Confidence 57999999999986421 1222346777666665544445799999998754 46678988887778999
Q ss_pred EeecC-----------CCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecc------cceEEcc
Q 020853 74 MCFGS-----------DGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE------FSAIFDS 132 (320)
Q Consensus 74 ~cl~~-----------~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~------~~~iiDS 132 (320)
+||.. ...|.|+||++|++ ++.|+|+.. ..+|.|.+++|.|+++.+..+ ..+||||
T Consensus 142 ~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~---~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDS 218 (364)
T cd05473 142 LQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE---EWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDS 218 (364)
T ss_pred EEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc---ceeEEEEEEEEEECCEecccccccccCccEEEeC
Confidence 98742 13799999999875 799999964 468999999999999988653 2699999
Q ss_pred ccceeeechHHHHHHHHHHHHhhhccccCCCCC--CCcceeeecCCCCCCccCceEEEEEcCC-----ceEEEcCCeeEE
Q 020853 133 GTSFTYLNDPAYTQISETFNSLAKEKRETSTSD--LPFEYCYVLSPNQTNFEYPVVNLTMKGG-----GPFFVNDPIVIV 205 (320)
Q Consensus 133 GTt~~~lp~~~y~~l~~~i~~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~~P~i~l~f~gg-----~~~~i~~~~~~~ 205 (320)
||++++||+++|++|.+++.++...... .+.. .....|+.... .....+|+|+|+|+|+ ..++|+++.|+.
T Consensus 219 GTs~~~lp~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~C~~~~~-~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~ 296 (364)
T cd05473 219 GTTNLRLPVKVFNAAVDAIKAASLIEDF-PDGFWLGSQLACWQKGT-TPWEIFPKISIYLRDENSSQSFRITILPQLYLR 296 (364)
T ss_pred CCcceeCCHHHHHHHHHHHHhhcccccC-CccccCcceeecccccC-chHhhCCcEEEEEccCCCCceEEEEECHHHhhh
Confidence 9999999999999999999887542211 1110 11236886431 1224699999999752 357888776665
Q ss_pred EeCCCCeeEEEEEE--EeCCCceeecHhhhceeEEEEeCCCCEEEEEeCCCCCCC
Q 020853 206 SSEPKGLYLYCLGV--VKSDNVNIIGQNFMTGYNIVFDREKNVLGWKASDCYGVN 258 (320)
Q Consensus 206 ~~~~~~~~~~Clg~--~~~~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~c~~~~ 258 (320)
..........|+++ ....+.||||+.|||++|+|||++++|||||+++|....
T Consensus 297 ~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 297 PVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred hhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 43211111568753 334458999999999999999999999999999998765
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.3e-35 Score=274.25 Aligned_cols=215 Identities=26% Similarity=0.382 Sum_probs=172.0
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|+|++++. .++++.|||++.+.+......+.+||||||++.. +++.+|+++|++ +++||+
T Consensus 78 ~~G~~~~D~v~ig~~------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~ 151 (317)
T cd06098 78 ISGFFSQDSVTVGDL------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSF 151 (317)
T ss_pred EEEEEEeeEEEECCE------EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEE
Confidence 579999999999875 3789999999877553222335799999998764 456789999998 789999
Q ss_pred eecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecc---cceEEccccceeeechHH
Q 020853 75 CFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE---FSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 75 cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~---~~~iiDSGTt~~~lp~~~ 143 (320)
||.++ ..|+|+||++|++ ++.|+|+.. ..+|.|.+++|.|+++.+... ..+||||||++++||+++
T Consensus 152 ~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~---~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~ 228 (317)
T cd06098 152 WLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR---KGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTI 228 (317)
T ss_pred EEecCCCCCCCcEEEECccChhhcccceEEEecCc---CcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHH
Confidence 99862 4799999999976 789999963 468999999999999887542 569999999999999988
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC
Q 020853 144 YTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS 222 (320)
Q Consensus 144 y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~ 222 (320)
++++. ....|+.. ..+|.|+|+| +|..++|+++.|++...... ..+|+ +++..
T Consensus 229 ~~~i~------------------~~~~C~~~------~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~-~~~C~~~~~~~ 282 (317)
T cd06098 229 VTQIN------------------SAVDCNSL------SSMPNVSFTI-GGKTFELTPEQYILKVGEGA-AAQCISGFTAL 282 (317)
T ss_pred HHhhh------------------ccCCcccc------ccCCcEEEEE-CCEEEEEChHHeEEeecCCC-CCEEeceEEEC
Confidence 76653 01258643 4689999999 68999999988877543221 25797 45431
Q ss_pred ------CCceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 223 ------DNVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 223 ------~~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+.||||+.|||++|+|||++++|||||+
T Consensus 283 ~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 283 DVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 23799999999999999999999999985
No 17
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.6e-35 Score=275.38 Aligned_cols=227 Identities=21% Similarity=0.313 Sum_probs=179.0
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCC------hHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTS------VPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s------~~~~L~~~g~i-~~~FS~ 74 (320)
++|.+++|++++++.. ++++.|||+..+.+......+.+||||||++..+ +..+|+++|++ +++||+
T Consensus 80 ~~G~~~~D~v~ig~~~------~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~ 153 (329)
T cd05485 80 LSGFLSTDTVSVGGVS------VKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSF 153 (329)
T ss_pred EEEEEecCcEEECCEE------ECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEE
Confidence 5799999999998763 7889999998876632223357999999998654 46899999999 889999
Q ss_pred eecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeec-ccceEEccccceeeechHHHH
Q 020853 75 CFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNF-EFSAIFDSGTSFTYLNDPAYT 145 (320)
Q Consensus 75 cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~-~~~~iiDSGTt~~~lp~~~y~ 145 (320)
||.++ ..|+|+||+.|++ ++.|+|+.. ..+|.|.++++.|+++.+.. +..+||||||++++||+++|+
T Consensus 154 ~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~---~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt~~~lP~~~~~ 230 (329)
T cd05485 154 YLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR---KGYWQFKMDSVSVGEGEFCSGGCQAIADTGTSLIAGPVDEIE 230 (329)
T ss_pred EecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC---ceEEEEEeeEEEECCeeecCCCcEEEEccCCcceeCCHHHHH
Confidence 99962 4699999999865 789999963 46899999999999987753 457999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC--
Q 020853 146 QISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS-- 222 (320)
Q Consensus 146 ~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~-- 222 (320)
+|.+++..... .. ......|+. ..++|.++|+| |++.++|+++.|++.....+ ..+|+ +++..
T Consensus 231 ~l~~~~~~~~~-----~~-~~~~~~C~~------~~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~-~~~C~~~~~~~~~ 296 (329)
T cd05485 231 KLNNAIGAKPI-----IG-GEYMVNCSA------IPSLPDITFVL-GGKSFSLTGKDYVLKVTQMG-QTICLSGFMGIDI 296 (329)
T ss_pred HHHHHhCCccc-----cC-CcEEEeccc------cccCCcEEEEE-CCEEeEEChHHeEEEecCCC-CCEEeeeEEECcC
Confidence 99888754210 01 111234542 35689999999 68999999998877654322 25797 46532
Q ss_pred ----CCceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 223 ----DNVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 223 ----~~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+.||||+.|||++|+|||++++|||||+
T Consensus 297 ~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 297 PPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 23799999999999999999999999984
No 18
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.4e-34 Score=270.12 Aligned_cols=225 Identities=20% Similarity=0.344 Sum_probs=176.6
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccC-ccCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCeeE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTG-SFLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSFS 73 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g-~f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FS 73 (320)
++|.+++|+|+|++.. + ++.|||.+...+ .|.. ...+||||||++.. +++.+|+++|.+ +++||
T Consensus 77 ~~G~~~~D~v~~g~~~------~-~~~fg~~~~~~~~~~~~-~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS 148 (326)
T cd05487 77 VKGFLSQDIVTVGGIP------V-TQMFGEVTALPAIPFML-AKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFS 148 (326)
T ss_pred EEEEEeeeEEEECCEE------e-eEEEEEEEeccCCccce-eecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEE
Confidence 5899999999999753 3 478999987542 2222 24699999998753 567889999999 89999
Q ss_pred EeecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecc--cceEEccccceeeechHH
Q 020853 74 MCFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFE--FSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 74 ~cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~--~~~iiDSGTt~~~lp~~~ 143 (320)
+||.++ ..|+|+||++|++ ++.|+|+.. ..+|.|.++++.|+++.+..+ ..+||||||++++||+++
T Consensus 149 ~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~---~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~~~lP~~~ 225 (326)
T cd05487 149 VYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSK---TGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASFISGPTSS 225 (326)
T ss_pred EEEeCCCCCCCCcEEEECCcChhhccCceEEEECCc---CceEEEEecEEEECCEEEecCCCCEEEECCCccchhCcHHH
Confidence 999862 4799999999975 688988853 468999999999999887643 479999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC
Q 020853 144 YTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS 222 (320)
Q Consensus 144 y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~ 222 (320)
|+++.+++.++.. . ......|.. ...+|.|+|+| ++..++|+++.|++...... ...|+ ++...
T Consensus 226 ~~~l~~~~~~~~~------~-~~y~~~C~~------~~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~-~~~C~~~~~~~ 290 (326)
T cd05487 226 ISKLMEALGAKER------L-GDYVVKCNE------VPTLPDISFHL-GGKEYTLSSSDYVLQDSDFS-DKLCTVAFHAM 290 (326)
T ss_pred HHHHHHHhCCccc------C-CCEEEeccc------cCCCCCEEEEE-CCEEEEeCHHHhEEeccCCC-CCEEEEEEEeC
Confidence 9999998865422 1 112335653 35689999999 68999999888777653321 15786 56542
Q ss_pred ------CCceeecHhhhceeEEEEeCCCCEEEEEeC
Q 020853 223 ------DNVNIIGQNFMTGYNIVFDREKNVLGWKAS 252 (320)
Q Consensus 223 ------~~~~IlG~~fl~~~yvvfD~e~~riGfa~~ 252 (320)
.+.||||+.|||++|+|||++++|||||++
T Consensus 291 ~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 291 DIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 237999999999999999999999999975
No 19
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.7e-33 Score=268.56 Aligned_cols=226 Identities=19% Similarity=0.314 Sum_probs=174.1
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCc--cCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCee
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS--FLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSF 72 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~--f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~F 72 (320)
.+|.+++|+|++++.. ++ ..|+|...+.+. +......+||||||++.. +++.+|+++|++ +++|
T Consensus 206 vsG~~~~DtVtiG~~~------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vF 278 (453)
T PTZ00147 206 VSGFFSKDLVTIGNLS------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVF 278 (453)
T ss_pred EEEEEEEEEEEECCEE------EE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEE
Confidence 5799999999999863 44 579998876552 123335799999999864 467799999999 7899
Q ss_pred EEeecC--CCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecccceEEccccceeeechHHHHH
Q 020853 73 SMCFGS--DGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ 146 (320)
Q Consensus 73 S~cl~~--~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~ 146 (320)
|+||.+ ...|.|+||++|++ ++.|+|+. +..+|.|.++ +.+++.. .....+||||||+++++|++++++
T Consensus 279 S~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~---~~~~W~V~l~-~~vg~~~-~~~~~aIiDSGTsli~lP~~~~~a 353 (453)
T PTZ00147 279 TFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN---HDLYWQVDLD-VHFGNVS-SEKANVIVDSGTSVITVPTEFLNK 353 (453)
T ss_pred EEEecCCCCCCeEEEECCcChhhcCCceEEEEcC---CCceEEEEEE-EEECCEe-cCceeEEECCCCchhcCCHHHHHH
Confidence 999986 35799999999976 89999995 2468999998 5777643 235689999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEeC---
Q 020853 147 ISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVKS--- 222 (320)
Q Consensus 147 l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~~--- 222 (320)
+.+++.+... ... ......|+. ..+|+++|+| +|..++|++++|+......+ ..+|+ +++..
T Consensus 354 i~~~l~~~~~----~~~-~~y~~~C~~-------~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~-~~~C~~~i~~~~~~ 419 (453)
T PTZ00147 354 FVESLDVFKV----PFL-PLYVTTCNN-------TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIG-SALCMLNIIPIDLE 419 (453)
T ss_pred HHHHhCCeec----CCC-CeEEEeCCC-------CCCCeEEEEE-CCEEEEECHHHheeccccCC-CcEEEEEEEECCCC
Confidence 9988854211 011 112345753 4689999999 58899999988776432221 25797 56553
Q ss_pred CCceeecHhhhceeEEEEeCCCCEEEEEeCC
Q 020853 223 DNVNIIGQNFMTGYNIVFDREKNVLGWKASD 253 (320)
Q Consensus 223 ~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~ 253 (320)
.+.||||+.|||++|+|||++++|||||+++
T Consensus 420 ~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 420 KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 2489999999999999999999999999986
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3.9e-32 Score=263.58 Aligned_cols=225 Identities=18% Similarity=0.267 Sum_probs=170.8
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCc--cCCCCCCceEeeeCCCCC------ChHHHHHhcCCC-CCee
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGS--FLDGAAPNGLFGLGMDKT------SVPSILANQGLI-PNSF 72 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~--f~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~F 72 (320)
.+|.+++|+|+|++.. ++ ..|||+..+.+. .......+||||||++.. +++.+|+++|++ +++|
T Consensus 205 v~G~~~~Dtv~iG~~~------~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vF 277 (450)
T PTZ00013 205 VKGFFSKDLVTLGHLS------MP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALF 277 (450)
T ss_pred EEEEEEEEEEEECCEE------Ec-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEE
Confidence 5799999999999863 44 589998765431 112235799999998864 577899999999 7899
Q ss_pred EEeecC--CCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeeeecccceEEccccceeeechHHHHH
Q 020853 73 SMCFGS--DGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQ 146 (320)
Q Consensus 73 S~cl~~--~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~ 146 (320)
|+||.+ ...|.|+||++|++ ++.|+|+.. ..+|.|.++ +.+|... .....+|+||||+++++|++++++
T Consensus 278 S~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~---~~yW~I~l~-v~~G~~~-~~~~~aIlDSGTSli~lP~~~~~~ 352 (450)
T PTZ00013 278 TFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNH---DLYWQIDLD-VHFGKQT-MQKANVIVDSGTTTITAPSEFLNK 352 (450)
T ss_pred EEEecCCCCCCCEEEECCcCccccccceEEEEcCc---CceEEEEEE-EEECcee-ccccceEECCCCccccCCHHHHHH
Confidence 999986 35799999999975 799999953 468999998 6666543 335679999999999999999998
Q ss_pred HHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeC-CCCeeEEEE-EEEeC--
Q 020853 147 ISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSE-PKGLYLYCL-GVVKS-- 222 (320)
Q Consensus 147 l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~-~~~~~~~Cl-g~~~~-- 222 (320)
+.+.+..... ... ......|+. ..+|+++|++ +|..++|++++|+.... ..+ ..|+ ++...
T Consensus 353 i~~~l~~~~~----~~~-~~y~~~C~~-------~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~--~~C~~~i~~~~~ 417 (450)
T PTZ00013 353 FFANLNVIKV----PFL-PFYVTTCDN-------KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDD--TLCMITMLPVDI 417 (450)
T ss_pred HHHHhCCeec----CCC-CeEEeecCC-------CCCCeEEEEE-CCEEEEECHHHheehhccCCC--CeeEEEEEECCC
Confidence 8887743211 011 112235642 4689999999 57899999887765321 122 4797 55543
Q ss_pred -CCceeecHhhhceeEEEEeCCCCEEEEEeCC
Q 020853 223 -DNVNIIGQNFMTGYNIVFDREKNVLGWKASD 253 (320)
Q Consensus 223 -~~~~IlG~~fl~~~yvvfD~e~~riGfa~~~ 253 (320)
.+.||||++|||++|+|||++++|||||+++
T Consensus 418 ~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 418 DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2489999999999999999999999999875
No 21
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=3.8e-32 Score=249.72 Aligned_cols=195 Identities=22% Similarity=0.286 Sum_probs=155.8
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCC---------ChHHHHHhcCCCCCee
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKT---------SVPSILANQGLIPNSF 72 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~---------s~~~~L~~~g~i~~~F 72 (320)
.+|.+++|+|+|++. .++++.|||++.+.+.+......+||||||++.. ++..+|.+++. +++|
T Consensus 69 ~~G~~~~D~v~ig~~------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~-~~~F 141 (278)
T cd06097 69 ASGIVYTDTVSIGGV------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD-APLF 141 (278)
T ss_pred EEEEEEEEEEEECCE------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-CceE
Confidence 579999999999875 3789999999987664333346899999998754 45678888765 8899
Q ss_pred EEeecCCCCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCeee--ecccceEEccccceeeechHHHHH
Q 020853 73 SMCFGSDGTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNAV--NFEFSAIFDSGTSFTYLNDPAYTQ 146 (320)
Q Consensus 73 S~cl~~~~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~~--~~~~~~iiDSGTt~~~lp~~~y~~ 146 (320)
|+||.++..|+|+||++|++ ++.|+|+... ..+|.|++++|.|+++.. .....+||||||+++++|++++++
T Consensus 142 s~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~~~~ 219 (278)
T cd06097 142 TADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS--SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAIVEA 219 (278)
T ss_pred EEEecCCCCcEEEEeccChHHcCCceEEEEccCC--CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHHHHH
Confidence 99999767899999999974 8999999753 468999999999998743 235689999999999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeCCCce
Q 020853 147 ISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSDNVN 226 (320)
Q Consensus 147 l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~~~~ 226 (320)
+.+++..... +. ...+|..++. . .+|.++|+| .|
T Consensus 220 l~~~l~g~~~------~~---~~~~~~~~C~-~--~~P~i~f~~----------------------------------~~ 253 (278)
T cd06097 220 YYSQVPGAYY------DS---EYGGWVFPCD-T--TLPDLSFAV----------------------------------FS 253 (278)
T ss_pred HHHhCcCCcc------cC---CCCEEEEECC-C--CCCCEEEEE----------------------------------EE
Confidence 9887732211 00 1124444432 2 289999888 69
Q ss_pred eecHhhhceeEEEEeCCCCEEEEEe
Q 020853 227 IIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 227 IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
|||++|||++|+|||++++|||||+
T Consensus 254 ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 254 ILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEcchhhCceeEEEcCCCceeeecC
Confidence 9999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.98 E-value=1.8e-31 Score=248.37 Aligned_cols=227 Identities=25% Similarity=0.448 Sum_probs=180.1
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCC-------CChHHHHHhcCCC-CCeeE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK-------TSVPSILANQGLI-PNSFS 73 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~-------~s~~~~L~~~g~i-~~~FS 73 (320)
.+|.+++|+|.|++.. +.++.||++....+........+||||||++. .+++.+|+++|.| +++||
T Consensus 69 ~~G~~~~D~v~ig~~~------~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fs 142 (317)
T PF00026_consen 69 VSGNLVSDTVSIGGLT------IPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFS 142 (317)
T ss_dssp EEEEEEEEEEEETTEE------EEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEE
T ss_pred cccccccceEeeeecc------ccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccc
Confidence 4799999999999863 77899999998655322223479999999753 5788999999999 89999
Q ss_pred EeecCC--CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCee-ee-cccceEEccccceeeechHHHH
Q 020853 74 MCFGSD--GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNA-VN-FEFSAIFDSGTSFTYLNDPAYT 145 (320)
Q Consensus 74 ~cl~~~--~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~-~~-~~~~~iiDSGTt~~~lp~~~y~ 145 (320)
+||.+. ..|.|+||++|++ ++.|+|+. ...+|.|.+.+|.++++. .. .+..++|||||++++||+++++
T Consensus 143 l~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~---~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~ 219 (317)
T PF00026_consen 143 LYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV---SSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPRSIFD 219 (317)
T ss_dssp EEEESTTSSEEEEEESSEEGGGEESEEEEEEBS---STTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEHHHHH
T ss_pred eeeeecccccchheeeccccccccCceeccCcc---cccccccccccccccccccccccceeeecccccccccccchhhH
Confidence 999983 3699999999876 68999997 346799999999999983 32 2468999999999999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEE-EEEe---
Q 020853 146 QISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCL-GVVK--- 221 (320)
Q Consensus 146 ~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Cl-g~~~--- 221 (320)
+|.+.+...... .+|..++ .....+|.++|+| ++.+++|+++.|+....... ..+|. ++..
T Consensus 220 ~i~~~l~~~~~~------------~~~~~~c-~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~-~~~C~~~i~~~~~ 284 (317)
T PF00026_consen 220 AIIKALGGSYSD------------GVYSVPC-NSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGN-GGYCYLGIQPMDS 284 (317)
T ss_dssp HHHHHHTTEEEC------------SEEEEET-TGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTT-SSEEEESEEEESS
T ss_pred HHHhhhcccccc------------eeEEEec-ccccccceEEEee-CCEEEEecchHhcccccccc-cceeEeeeecccc
Confidence 999998766433 1333322 2335789999999 58999999988887765442 13786 5554
Q ss_pred --CCCceeecHhhhceeEEEEeCCCCEEEEEeC
Q 020853 222 --SDNVNIIGQNFMTGYNIVFDREKNVLGWKAS 252 (320)
Q Consensus 222 --~~~~~IlG~~fl~~~yvvfD~e~~riGfa~~ 252 (320)
..+.+|||.+|||++|+|||.|++|||||++
T Consensus 285 ~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 285 SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 1348999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.97 E-value=1.1e-30 Score=239.09 Aligned_cols=197 Identities=28% Similarity=0.464 Sum_probs=164.6
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCC------CChHHHHHhcCCC-CCeeEE
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDK------TSVPSILANQGLI-PNSFSM 74 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~------~s~~~~L~~~g~i-~~~FS~ 74 (320)
.+|.+++|+|+|++.. +.++.|||++.+.+.+.. ...+||||||+.. .+++.+|.+++.+ +++||+
T Consensus 69 ~~g~~~~D~v~~~~~~------~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~ 141 (283)
T cd05471 69 VTGGLGTDTVTIGGLT------IPNQTFGCATSESGDFSS-SGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSF 141 (283)
T ss_pred EEEEEEEeEEEECCEE------EeceEEEEEeccCCcccc-cccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEE
Confidence 5789999999999864 789999999988763332 3579999999998 7999999999988 899999
Q ss_pred eecCC----CCeeEEECCCCCC----CCeeeeCccCCCCCeEEEEEEEEEECCee--e-ecccceEEccccceeeechHH
Q 020853 75 CFGSD----GTGRISFGDKGSP----GQGETPFSLRQTHPTYNITITQVSVGGNA--V-NFEFSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 75 cl~~~----~~G~i~fG~~d~~----~~~~tpl~~~~~~~~y~V~l~~i~v~g~~--~-~~~~~~iiDSGTt~~~lp~~~ 143 (320)
||.+. ..|.|+||+.|++ ++.|+|+... ...+|.|.+++|.|+++. . .....++|||||++++||+++
T Consensus 142 ~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~-~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 142 YLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN-GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred EEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC-CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHH
Confidence 99973 7899999999974 8999999864 246899999999999863 2 235689999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCcceeeecCCCCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeCC
Q 020853 144 YTQISETFNSLAKEKRETSTSDLPFEYCYVLSPNQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKSD 223 (320)
Q Consensus 144 y~~l~~~i~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~~ 223 (320)
|++|++++.++... ...|+... +.....+|.|+|+|
T Consensus 221 ~~~l~~~~~~~~~~----------~~~~~~~~-~~~~~~~p~i~f~f--------------------------------- 256 (283)
T cd05471 221 YDAILKALGAAVSS----------SDGGYGVD-CSPCDTLPDITFTF--------------------------------- 256 (283)
T ss_pred HHHHHHHhCCcccc----------cCCcEEEe-CcccCcCCCEEEEE---------------------------------
Confidence 99999999877543 11233222 23457799999999
Q ss_pred CceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 224 NVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 224 ~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
.+|||+.|||++|++||.+++|||||+
T Consensus 257 -~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 789999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=1.7e-26 Score=195.71 Aligned_cols=142 Identities=30% Similarity=0.581 Sum_probs=112.4
Q ss_pred eEEEEEEEEEECCeeeeccc----------ceEEccccceeeechHHHHHHHHHHHHhhhccccC--CCCCCCcceeeec
Q 020853 107 TYNITITQVSVGGNAVNFEF----------SAIFDSGTSFTYLNDPAYTQISETFNSLAKEKRET--STSDLPFEYCYVL 174 (320)
Q Consensus 107 ~y~V~l~~i~v~g~~~~~~~----------~~iiDSGTt~~~lp~~~y~~l~~~i~~~~~~~~~~--~~~~~~~~~C~~~ 174 (320)
+|+|+|++|+||++++.++. ++||||||++|+||+++|++|+++|.+++...... .....+++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 49999999999999998653 48999999999999999999999999998765421 2335678899999
Q ss_pred CC---CCCCccCceEEEEEcCCceEEEcCCeeEEEeCCCCeeEEEEEEEeC----CCceeecHhhhceeEEEEeCCCCEE
Q 020853 175 SP---NQTNFEYPVVNLTMKGGGPFFVNDPIVIVSSEPKGLYLYCLGVVKS----DNVNIIGQNFMTGYNIVFDREKNVL 247 (320)
Q Consensus 175 ~~---~~~~~~~P~i~l~f~gg~~~~i~~~~~~~~~~~~~~~~~Clg~~~~----~~~~IlG~~fl~~~yvvfD~e~~ri 247 (320)
+. ......+|+|+|+|.||..+++++++|++... ++ .+|+++..+ .+..|||..+|+++.++||++++||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~--~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PG--VFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TT--EEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc-CC--CEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 75 24678999999999989999999988888776 33 799999887 3599999999999999999999999
Q ss_pred EEEe
Q 020853 248 GWKA 251 (320)
Q Consensus 248 Gfa~ 251 (320)
||++
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.37 E-value=1.6e-12 Score=110.38 Aligned_cols=81 Identities=38% Similarity=0.697 Sum_probs=66.2
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeeeCCCCCChHHHHHhcCCCCCeeEEeecC---
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGLGMDKTSVPSILANQGLIPNSFSMCFGS--- 78 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FS~cl~~--- 78 (320)
++|++++|+|+|+...++. ....++.|||++.+.+.+. ..+||||||+.++||++||+++ ..++|||||.+
T Consensus 81 ~~G~l~~D~~~~~~~~~~~-~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~ 154 (164)
T PF14543_consen 81 SSGFLASDTLTFGSSSGGS-NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSP 154 (164)
T ss_dssp EEEEEEEEEEEEEEESSSS-EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SS
T ss_pred ccCceEEEEEEecCCCCCC-ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCC
Confidence 6899999999999975322 3578999999999998775 4699999999999999999887 57999999997
Q ss_pred CCCeeEEECC
Q 020853 79 DGTGRISFGD 88 (320)
Q Consensus 79 ~~~G~i~fG~ 88 (320)
+..|+|+||+
T Consensus 155 ~~~g~l~fG~ 164 (164)
T PF14543_consen 155 SSSGFLSFGD 164 (164)
T ss_dssp SSEEEEEECS
T ss_pred CCCEEEEeCc
Confidence 5789999995
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=97.51 E-value=0.00013 Score=57.05 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=36.3
Q ss_pred ceeEEEEEEEEeecCCCCccccccceEEeeeeeccCccCCCCCCceEeee
Q 020853 2 STGFLVEDVLHLATDEKQSKSVDSRISFGCGRVQTGSFLDGAAPNGLFGL 51 (320)
Q Consensus 2 ssG~l~~D~l~l~~~~~~~~~~~~~~~FGc~~~~~g~f~~~~~~~GIlGL 51 (320)
..|.+++|+|+|++.. +.++.|||++...+.+......+|||||
T Consensus 66 ~~g~~~~D~v~ig~~~------~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 66 LSGGLSTDTVSIGDIE------VVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEEEEEEEECCEE------ECCEEEEEEEecCCccccccccccccCC
Confidence 4689999999998763 7899999999988865444467999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.22 E-value=0.099 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.2
Q ss_pred ceeecHhhhceeEEEEeCCCCEEE
Q 020853 225 VNIIGQNFMTGYNIVFDREKNVLG 248 (320)
Q Consensus 225 ~~IlG~~fl~~~yvvfD~e~~riG 248 (320)
..|||..||+.+..+.|..+.++-
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEE
Confidence 679999999999999999999875
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=95.07 E-value=0.15 Score=40.85 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCeEEEEEEEEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 105 HPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 105 ~~~y~V~l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
..+|.+. +.|+|+ +...++|||.+.+.+++++.+++
T Consensus 9 ~g~~~v~---~~InG~----~~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGR----NVRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCE----EEEEEEECCCCcEEcCHHHHHHc
Confidence 4567544 568887 45699999999999999887655
No 29
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.23 E-value=0.25 Score=40.40 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=25.3
Q ss_pred ceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 225 VNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 225 ~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
..|||..+|+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 689999999999999999999999965
No 30
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.41 E-value=1.5 Score=34.23 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.5
Q ss_pred CceeecHhhhceeEEEEeCCCCE
Q 020853 224 NVNIIGQNFMTGYNIVFDREKNV 246 (320)
Q Consensus 224 ~~~IlG~~fl~~~yvvfD~e~~r 246 (320)
+..+||..||+.+-++.|..+++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~ 106 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQG 106 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCc
Confidence 47899999999999999998765
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=88.49 E-value=0.77 Score=33.68 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=24.1
Q ss_pred EEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 115 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 115 i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
+.|+|+ +..+++|||.+.+.+.+++++++
T Consensus 3 v~vng~----~~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGK----PVRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCE----EEEEEEcCCCCcEEECHHHHHHc
Confidence 567776 34699999999999999888766
No 32
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=86.68 E-value=1.9 Score=34.73 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=23.1
Q ss_pred EEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 114 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 114 ~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
.++++|..+ .|++|||+..+.++.+.++++
T Consensus 28 ~~~ing~~v----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE----EEEEeCCCCccccCHHHHHHc
Confidence 456888765 499999999999999988764
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.12 E-value=1.9 Score=30.91 Aligned_cols=30 Identities=27% Similarity=0.634 Sum_probs=25.0
Q ss_pred EEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 114 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 114 ~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
.+.|+|..+. +++|||.+-.+++.++.++|
T Consensus 12 ~~~I~g~~~~----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE----EEEeCCCcceecCHHHHHHh
Confidence 3567886655 99999999999999988776
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=83.65 E-value=2.2 Score=31.93 Aligned_cols=30 Identities=17% Similarity=0.490 Sum_probs=25.5
Q ss_pred EEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 114 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 114 ~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
.+.|+|+.+. ..+|||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE----EEEcCCcceEEeCHHHHHHh
Confidence 4678888665 89999999999999888766
No 35
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=83.26 E-value=2.4 Score=31.37 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=23.8
Q ss_pred EEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 114 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 114 ~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
.+.|+++.+ .+++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE----EEEEECCCCcEEcCHHHHHHc
Confidence 456776644 599999999999999877655
No 36
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.59 E-value=4.1 Score=30.19 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=23.8
Q ss_pred EEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 115 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 115 i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
+.|||+.+. .++|||.+.+.++++..+++
T Consensus 3 v~InG~~~~----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE----EEEECCCCeEEECHHHhhhc
Confidence 567777544 89999999999999888765
No 37
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=75.16 E-value=48 Score=31.54 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=32.8
Q ss_pred EE-EEEEeCCC-ceeecHhhhceeEEEEeCCCCEEEEEeCCC
Q 020853 215 YC-LGVVKSDN-VNIIGQNFMTGYNIVFDREKNVLGWKASDC 254 (320)
Q Consensus 215 ~C-lg~~~~~~-~~IlG~~fl~~~yvvfD~e~~riGfa~~~c 254 (320)
-| +.++...+ ...||-..||.+-..-|++++++-++...-
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 37 46666544 679999999999999999999999987653
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=68.27 E-value=5.4 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEECCeeeecccceEEccccceeeechHH
Q 020853 114 QVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 114 ~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~ 143 (320)
.|.++|+.+ .+++|||+..+.++++.
T Consensus 9 ~v~i~g~~i----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE----EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE----EEEEecCCCcceecccc
Confidence 466778744 49999999999999754
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.00 E-value=34 Score=28.97 Aligned_cols=23 Identities=17% Similarity=0.525 Sum_probs=19.3
Q ss_pred cceEEccccceeeechHHHHHHH
Q 020853 126 FSAIFDSGTSFTYLNDPAYTQIS 148 (320)
Q Consensus 126 ~~~iiDSGTt~~~lp~~~y~~l~ 148 (320)
..++||||+...+...++.++|.
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEeCCCccceeehhhHHhhC
Confidence 45999999999999988877664
No 40
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=61.19 E-value=8.6 Score=29.08 Aligned_cols=31 Identities=13% Similarity=0.226 Sum_probs=24.1
Q ss_pred EEECCeeeecccceEEccccceeeechHHHHHHH
Q 020853 115 VSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQIS 148 (320)
Q Consensus 115 i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l~ 148 (320)
+.++|+ .+..+.+|||.+...+|...|.++.
T Consensus 3 ~~i~g~---~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK---QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc---eeEEEEEecCCEEEeccHHHHhhhc
Confidence 456663 3456899999999999998887664
No 41
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=59.94 E-value=73 Score=24.05 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=15.7
Q ss_pred cceEEccccceeeechHHH
Q 020853 126 FSAIFDSGTSFTYLNDPAY 144 (320)
Q Consensus 126 ~~~iiDSGTt~~~lp~~~y 144 (320)
...++|||.....+|....
T Consensus 10 ~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 10 LRFLVDTGAAVSVLPASST 28 (89)
T ss_pred cEEEEeCCCceEeeccccc
Confidence 4579999999999997553
No 42
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=58.28 E-value=24 Score=30.89 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=28.9
Q ss_pred CCCeEEEEEEEEEECCeeeecccceEEccccceeeechHHHHHH
Q 020853 104 THPTYNITITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 104 ~~~~y~V~l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
.+.+|.+ ...|||+.+. .++|||.|...++++..+++
T Consensus 102 ~~GHF~a---~~~VNGk~v~----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEA---NGRVNGKKVD----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEE---EEEECCEEEE----EEEecCcceeecCHHHHHHh
Confidence 3456764 4579999877 89999999999998776544
No 43
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=57.64 E-value=32 Score=30.05 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=21.1
Q ss_pred CceeecHhhhceeEEEEeCCCCEEEEEe
Q 020853 224 NVNIIGQNFMTGYNIVFDREKNVLGWKA 251 (320)
Q Consensus 224 ~~~IlG~~fl~~~yvvfD~e~~riGfa~ 251 (320)
-..|||.+|+|.|+=-.+.+ ++|-|..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 47899999999887666665 5777765
No 44
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.26 E-value=17 Score=29.18 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.8
Q ss_pred eEEccccc-eeeechHHHHHH
Q 020853 128 AIFDSGTS-FTYLNDPAYTQI 147 (320)
Q Consensus 128 ~iiDSGTt-~~~lp~~~y~~l 147 (320)
.++|||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 39999999 999999998766
No 45
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=28.98 E-value=90 Score=20.97 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=18.6
Q ss_pred ccceEEccccceeeechHHHHHH
Q 020853 125 EFSAIFDSGTSFTYLNDPAYTQI 147 (320)
Q Consensus 125 ~~~~iiDSGTt~~~lp~~~y~~l 147 (320)
+..+++|||.+...+..+.++++
T Consensus 9 ~~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 9 PVRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEEcCCCcccccCHHHHHHc
Confidence 34689999999999998887543
No 46
>CHL00031 psbT photosystem II protein T
Probab=27.66 E-value=59 Score=19.64 Aligned_cols=16 Identities=44% Similarity=0.413 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhcC
Q 020853 305 TCALLVMTLIASFAIF 320 (320)
Q Consensus 305 ~~~~~~~~~~~~~~~~ 320 (320)
.+++....-+++||||
T Consensus 7 tfll~~tlgilFFAI~ 22 (33)
T CHL00031 7 TFLLVSTLGIIFFAIF 22 (33)
T ss_pred HHHHHHHHHHHHHhhe
Confidence 4566666778888886
No 47
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=27.24 E-value=61 Score=19.26 Aligned_cols=16 Identities=25% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhcC
Q 020853 305 TCALLVMTLIASFAIF 320 (320)
Q Consensus 305 ~~~~~~~~~~~~~~~~ 320 (320)
.+++....-+++||||
T Consensus 7 tfll~~tlgiiFFAIf 22 (31)
T PRK11875 7 ILILTLALVTLFFAIA 22 (31)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4566666677888886
No 48
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=25.39 E-value=75 Score=28.65 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEECCeeeecccceEEccccceeeechHH
Q 020853 113 TQVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 113 ~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~ 143 (320)
..|.||.-. .+..++||||++.+++|..-
T Consensus 3 ~~i~vGtP~--Q~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 3 TPVKIGTPP--QTLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eeEEECCCC--cEEEEEEeCCCCceeEeeCC
Confidence 456777621 12359999999999999653
No 49
>PRK09784 hypothetical protein; Provisional
Probab=23.77 E-value=1.1e+02 Score=27.61 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=30.7
Q ss_pred EEEEEEECCeeee----cccceEEccccce-eeechHHHHHHHHH
Q 020853 111 TITQVSVGGNAVN----FEFSAIFDSGTSF-TYLNDPAYTQISET 150 (320)
Q Consensus 111 ~l~~i~v~g~~~~----~~~~~iiDSGTt~-~~lp~~~y~~l~~~ 150 (320)
++.+|++|+++.. ++.+.+|.+|..+ .|||++++.+-++.
T Consensus 356 nvasislgnesfstd~dleygylintGnhYdvYLpPELfaqAy~L 400 (417)
T PRK09784 356 NVASISLGNESFSTDEDLEYGYLINTGNHYDVYLPPELFAQAYKL 400 (417)
T ss_pred ceeeEEccCcccccccccceeeEEecCceeEEecCHHHHHHHHHh
Confidence 4678888887764 4568899999865 69999998876543
No 50
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=22.27 E-value=81 Score=29.30 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=21.8
Q ss_pred EEEEEECCeeeecccceEEccccceeeechHH
Q 020853 112 ITQVSVGGNAVNFEFSAIFDSGTSFTYLNDPA 143 (320)
Q Consensus 112 l~~i~v~g~~~~~~~~~iiDSGTt~~~lp~~~ 143 (320)
+..|.||.-. .+..++||||++.+++|..-
T Consensus 5 ~~~i~vGtP~--Q~~~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 5 FIDIFIGNPP--QKQSLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEEEecCCC--eEEEEEEeCCCCceEEecCC
Confidence 4566787632 23569999999999998653
No 51
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=20.92 E-value=69 Score=18.80 Aligned_cols=16 Identities=44% Similarity=0.378 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhcC
Q 020853 305 TCALLVMTLIASFAIF 320 (320)
Q Consensus 305 ~~~~~~~~~~~~~~~~ 320 (320)
.++++....+++||||
T Consensus 7 ~~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 7 TFLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4566666677788875
No 52
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=20.27 E-value=82 Score=19.79 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhcC
Q 020853 306 CALLVMTLIASFAIF 320 (320)
Q Consensus 306 ~~~~~~~~~~~~~~~ 320 (320)
+=.|+.++|++++++
T Consensus 24 lq~Wv~v~l~v~~v~ 38 (38)
T PF10853_consen 24 LQIWVIVLLAVLGVC 38 (38)
T ss_pred HHHHHHHHHHHHhcC
Confidence 446788888888764
Done!