Query 020855
Match_columns 320
No_of_seqs 144 out of 207
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2234 Predicted UDP-galactos 99.9 5.9E-21 1.3E-25 185.3 14.8 170 109-291 89-261 (345)
2 PF04142 Nuc_sug_transp: Nucle 99.8 1.1E-19 2.4E-24 169.1 15.0 172 108-292 13-193 (244)
3 PF06027 DUF914: Eukaryotic pr 99.5 2.5E-12 5.4E-17 125.4 19.2 195 56-265 30-224 (334)
4 KOG2765 Predicted membrane pro 99.5 1.2E-12 2.7E-17 128.7 15.3 193 110-318 157-357 (416)
5 PF08449 UAA: UAA transporter 99.4 5E-12 1.1E-16 119.5 18.1 244 58-317 16-263 (303)
6 TIGR00817 tpt Tpt phosphate/ph 99.1 3.7E-08 8.1E-13 92.5 23.5 190 58-268 17-207 (302)
7 PTZ00343 triose or hexose phos 99.1 7.2E-08 1.6E-12 93.7 24.5 202 42-258 48-251 (350)
8 TIGR00950 2A78 Carboxylate/Ami 98.9 2.7E-07 5.8E-12 83.7 19.7 127 120-259 55-181 (260)
9 PLN00411 nodulin MtN21 family 98.7 2.3E-06 5E-11 84.1 21.4 164 53-220 23-208 (358)
10 PRK11272 putative DMT superfam 98.7 1.2E-05 2.6E-10 75.6 23.5 163 39-220 4-169 (292)
11 TIGR00803 nst UDP-galactose tr 98.6 4.5E-07 9.7E-12 81.9 10.5 179 118-311 5-184 (222)
12 TIGR00688 rarD rarD protein. T 98.5 1.1E-05 2.4E-10 74.0 17.3 149 56-220 15-165 (256)
13 PRK11453 O-acetylserine/cystei 98.4 1.6E-05 3.5E-10 75.0 17.5 112 128-249 75-187 (299)
14 PF00892 EamA: EamA-like trans 98.3 7.7E-06 1.7E-10 64.9 10.4 118 58-182 6-124 (126)
15 COG0697 RhaT Permeases of the 98.3 9.1E-05 2E-09 66.7 18.3 101 114-220 72-173 (292)
16 TIGR00776 RhaT RhaT L-rhamnose 98.2 2.6E-05 5.7E-10 74.0 13.9 112 109-221 56-172 (290)
17 TIGR03340 phn_DUF6 phosphonate 98.2 0.00023 5E-09 66.5 20.0 98 115-220 66-163 (281)
18 PF13536 EmrE: Multidrug resis 98.2 1E-05 2.2E-10 66.3 9.3 75 114-189 36-111 (113)
19 PRK15430 putative chlorampheni 98.2 8.2E-05 1.8E-09 70.3 15.7 91 117-220 78-168 (296)
20 PF03151 TPT: Triose-phosphate 98.1 9.5E-06 2.1E-10 68.1 7.2 115 202-316 1-118 (153)
21 PRK11689 aromatic amino acid e 98.0 0.00037 8E-09 65.8 17.2 105 122-230 71-181 (295)
22 PRK10532 threonine and homoser 98.0 0.0012 2.7E-08 62.2 19.8 117 117-253 76-192 (293)
23 KOG1443 Predicted integral mem 97.9 0.0001 2.2E-09 72.1 11.9 153 107-275 83-238 (349)
24 KOG4510 Permease of the drug/m 97.9 1.6E-05 3.5E-10 76.5 5.4 169 127-309 113-323 (346)
25 PF03151 TPT: Triose-phosphate 97.5 0.0026 5.7E-08 53.3 12.2 125 57-181 14-150 (153)
26 PRK15051 4-amino-4-deoxy-L-ara 97.5 0.0013 2.8E-08 54.7 10.0 65 120-184 45-109 (111)
27 TIGR00776 RhaT RhaT L-rhamnose 97.3 0.0028 6.1E-08 60.2 11.8 120 55-184 164-288 (290)
28 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0078 1.7E-07 54.6 14.2 116 57-179 142-259 (260)
29 PRK10532 threonine and homoser 97.3 0.013 2.9E-07 55.2 15.8 69 117-185 213-282 (293)
30 PLN00411 nodulin MtN21 family 97.2 0.01 2.2E-07 58.7 15.2 77 111-189 257-333 (358)
31 KOG3912 Predicted integral mem 97.1 0.012 2.7E-07 57.5 13.2 110 106-219 83-194 (372)
32 PF06800 Sugar_transport: Suga 97.1 0.017 3.6E-07 55.6 14.1 113 109-222 42-159 (269)
33 KOG1441 Glucose-6-phosphate/ph 97.0 0.005 1.1E-07 60.3 9.7 195 40-253 14-212 (316)
34 PRK13499 rhamnose-proton sympo 96.8 0.048 1E-06 54.2 15.2 109 109-217 70-190 (345)
35 PRK11689 aromatic amino acid e 96.7 0.034 7.3E-07 52.6 13.4 67 118-184 221-287 (295)
36 KOG4314 Predicted carbohydrate 96.7 0.0024 5.3E-08 59.7 5.3 113 110-233 50-163 (290)
37 KOG1582 UDP-galactose transpor 96.5 0.027 5.9E-07 54.9 11.1 207 36-261 36-245 (367)
38 PRK11272 putative DMT superfam 96.5 0.087 1.9E-06 49.6 14.2 64 122-185 223-286 (292)
39 PF05653 Mg_trans_NIPA: Magnes 96.4 0.01 2.3E-07 57.3 7.8 70 121-190 59-128 (300)
40 PRK15430 putative chlorampheni 96.3 0.1 2.2E-06 49.3 13.7 71 113-183 214-284 (296)
41 PRK10452 multidrug efflux syst 96.3 0.041 8.8E-07 47.0 9.7 69 119-187 37-106 (120)
42 TIGR03340 phn_DUF6 phosphonate 96.2 0.027 5.9E-07 52.6 9.0 67 116-182 215-281 (281)
43 TIGR00817 tpt Tpt phosphate/ph 96.1 0.027 5.9E-07 53.0 8.8 63 122-184 231-293 (302)
44 COG2962 RarD Predicted permeas 96.0 0.092 2E-06 51.2 11.6 116 108-241 68-184 (293)
45 KOG1444 Nucleotide-sugar trans 95.7 0.19 4.2E-06 49.4 12.7 124 127-264 92-215 (314)
46 KOG1583 UDP-N-acetylglucosamin 95.7 0.092 2E-06 51.3 10.1 183 114-307 66-270 (330)
47 PRK11453 O-acetylserine/cystei 95.5 0.59 1.3E-05 44.2 14.7 75 111-186 215-289 (299)
48 COG2510 Predicted membrane pro 95.3 0.053 1.1E-06 47.5 6.5 112 70-184 28-139 (140)
49 PRK10650 multidrug efflux syst 95.1 0.17 3.7E-06 42.5 8.7 65 119-183 42-107 (109)
50 PRK11431 multidrug efflux syst 95.0 0.21 4.5E-06 41.6 9.0 64 121-184 38-102 (105)
51 COG0697 RhaT Permeases of the 94.8 1.4 2.9E-05 39.7 14.5 74 112-185 214-288 (292)
52 PRK09541 emrE multidrug efflux 94.8 0.31 6.8E-06 40.8 9.6 62 125-186 43-105 (110)
53 TIGR00803 nst UDP-galactose tr 94.5 0.083 1.8E-06 47.7 5.9 125 52-179 90-219 (222)
54 COG2076 EmrE Membrane transpor 94.3 0.38 8.3E-06 40.5 8.9 60 126-185 44-104 (106)
55 PRK13499 rhamnose-proton sympo 94.1 0.95 2.1E-05 45.1 12.7 117 69-186 206-343 (345)
56 PRK02971 4-amino-4-deoxy-L-ara 94.0 0.37 8.1E-06 41.3 8.6 66 122-187 58-125 (129)
57 KOG1442 GDP-fucose transporter 93.7 0.095 2.1E-06 51.3 4.8 160 108-295 102-261 (347)
58 PF06027 DUF914: Eukaryotic pr 92.2 1.1 2.4E-05 44.4 10.0 145 37-189 166-310 (334)
59 COG5006 rhtA Threonine/homoser 91.4 1.4 2.9E-05 42.9 9.2 74 108-181 205-279 (292)
60 PTZ00343 triose or hexose phos 91.3 4.6 9.9E-05 39.6 13.1 64 120-183 280-347 (350)
61 KOG2766 Predicted membrane pro 91.2 0.054 1.2E-06 52.5 -0.3 170 70-252 45-242 (336)
62 PF00893 Multi_Drug_Res: Small 90.5 1 2.3E-05 36.1 6.5 55 121-175 38-93 (93)
63 PF06379 RhaT: L-rhamnose-prot 90.2 4 8.8E-05 40.8 11.6 164 44-215 5-187 (344)
64 PF08449 UAA: UAA transporter 89.4 5.3 0.00012 37.9 11.5 59 125-184 239-297 (303)
65 KOG1581 UDP-galactose transpor 89.0 9.2 0.0002 38.0 12.9 143 115-262 86-228 (327)
66 KOG2922 Uncharacterized conser 78.5 0.8 1.7E-05 45.5 0.6 61 131-191 83-143 (335)
67 PF06800 Sugar_transport: Suga 76.8 28 0.00061 33.7 10.5 103 71-181 162-268 (269)
68 PF04657 DUF606: Protein of un 76.6 30 0.00064 29.9 9.7 104 72-181 29-138 (138)
69 PF05884 ZYG-11_interact: Inte 74.1 97 0.0021 30.7 17.3 193 33-258 94-297 (299)
70 PF10639 UPF0546: Uncharacteri 72.3 9.6 0.00021 32.4 5.4 68 114-181 43-111 (113)
71 TIGR03144 cytochr_II_ccsB cyto 71.5 88 0.0019 29.2 13.0 24 236-259 146-170 (243)
72 KOG1580 UDP-galactose transpor 70.8 31 0.00067 33.7 9.0 126 129-261 102-227 (337)
73 COG2962 RarD Predicted permeas 67.0 39 0.00083 33.4 9.0 128 57-184 111-283 (293)
74 PF04142 Nuc_sug_transp: Nucle 56.2 1.7E+02 0.0038 27.4 11.2 113 56-173 128-242 (244)
75 PF06379 RhaT: L-rhamnose-prot 55.4 1.2E+02 0.0025 30.7 10.2 149 36-186 169-342 (344)
76 KOG1623 Multitransmembrane pro 54.5 42 0.00092 32.2 6.8 125 127-261 55-184 (243)
77 PF01578 Cytochrom_C_asm: Cyto 52.5 1.7E+02 0.0038 26.2 11.5 88 198-294 72-173 (214)
78 COG4711 Predicted membrane pro 52.2 49 0.0011 31.3 6.6 129 117-250 76-209 (217)
79 PF09933 DUF2165: Predicted sm 48.8 10 0.00022 34.1 1.6 60 240-301 69-128 (160)
80 PRK04214 rbn ribonuclease BN/u 47.8 2.7E+02 0.0059 28.1 11.7 64 108-183 208-271 (412)
81 TIGR00688 rarD rarD protein. T 46.8 63 0.0014 29.5 6.5 44 116-159 212-255 (256)
82 PRK15433 branched-chain amino 45.9 3.7E+02 0.008 28.0 15.3 259 41-310 10-309 (439)
83 KOG2765 Predicted membrane pro 45.6 35 0.00075 35.1 4.9 70 119-188 325-394 (416)
84 COG1950 Predicted membrane pro 44.2 85 0.0018 27.2 6.3 80 108-221 30-109 (120)
85 PF07690 MFS_1: Major Facilita 41.4 2.7E+02 0.0059 25.1 14.8 41 44-87 123-163 (352)
86 PF07062 Clc-like: Clc-like; 41.2 1.2E+02 0.0026 28.4 7.5 109 188-301 88-206 (211)
87 PRK01844 hypothetical protein; 40.7 29 0.00063 27.5 2.8 28 41-68 4-31 (72)
88 PRK00523 hypothetical protein; 34.8 41 0.00089 26.7 2.8 28 41-68 5-32 (72)
89 COG4858 Uncharacterized membra 34.7 1.9E+02 0.0042 27.3 7.6 62 43-113 102-166 (226)
90 KOG2325 Predicted transporter/ 34.7 5.7E+02 0.012 27.0 13.6 98 35-141 30-131 (488)
91 COG5070 VRG4 Nucleotide-sugar 34.1 89 0.0019 30.4 5.4 137 127-273 83-221 (309)
92 COG5006 rhtA Threonine/homoser 33.5 3.6E+02 0.0079 26.6 9.5 154 41-220 14-167 (292)
93 PF03631 Virul_fac_BrkB: Virul 33.4 3.8E+02 0.0083 24.5 11.7 47 108-159 191-237 (260)
94 PF11361 DUF3159: Protein of u 32.7 1.7E+02 0.0036 27.0 6.8 73 203-307 27-99 (187)
95 PF10361 DUF2434: Protein of u 31.9 2.1E+02 0.0046 28.3 7.7 86 207-303 51-142 (296)
96 PF10242 L_HGMIC_fpl: Lipoma H 31.6 1.7E+02 0.0037 26.2 6.7 63 220-286 93-166 (181)
97 KOG4026 Uncharacterized conser 31.3 3.3E+02 0.0072 25.7 8.6 92 198-295 77-179 (207)
98 PF07857 DUF1632: CEO family ( 29.3 1.9E+02 0.0041 27.8 6.9 29 198-226 180-208 (254)
99 TIGR01995 PTS-II-ABC-beta PTS 28.5 7.7E+02 0.017 26.5 13.0 104 118-229 117-233 (610)
100 PRK11128 putative 3-phenylprop 26.7 5.6E+02 0.012 24.3 16.5 19 53-71 139-157 (382)
101 cd06174 MFS The Major Facilita 26.1 4.7E+02 0.01 23.3 16.1 27 44-70 125-151 (352)
102 PF11293 DUF3094: Protein of u 25.9 80 0.0017 23.9 2.9 32 33-64 23-54 (55)
103 COG4975 GlcU Putative glucose 25.3 42 0.00092 32.8 1.7 77 108-184 205-285 (288)
104 PRK08633 2-acyl-glycerophospho 24.7 9.7E+02 0.021 26.4 19.5 22 47-68 144-165 (1146)
105 KOG2322 N-methyl-D-aspartate r 24.4 2.6E+02 0.0056 26.9 6.7 95 145-258 55-157 (237)
106 KOG3626 Organic anion transpor 23.6 3.3E+02 0.0071 30.3 8.2 130 52-182 287-476 (735)
107 PF09335 SNARE_assoc: SNARE as 21.9 4E+02 0.0088 21.0 7.8 55 39-93 15-80 (123)
No 1
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.86 E-value=5.9e-21 Score=185.30 Aligned_cols=170 Identities=20% Similarity=0.251 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCC
Q 020855 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (320)
Q Consensus 109 ~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s 188 (320)
|+=..--.++.++|+.||.|+-+++.|||++||++.+|.|+.+||+|++++++||+++.||.|+++|++|+++++++..+
T Consensus 89 ~~~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 89 PRETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 33445566789999999999999999999999999999999999999999999999999999999999999999966544
Q ss_pred CCC--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEeh-hHHHHHHHHHHHHHhHhhccCCccchh
Q 020855 189 ENT--SGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLD-MQIYSSFVATCGCVVGLFASGEWKGLS 265 (320)
Q Consensus 189 ~~~--~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vle-mQi~~slvAt~~~~vGl~~sgd~~~i~ 265 (320)
..+ ++.+..+.+.|+.+.++||.++|+ .+.+|||++|+..-++|++ +|+ ++++..++.+++..+ ||+++.
T Consensus 169 ~~~a~~~~~~~n~~~G~~avl~~c~~Sgf----AgvYfEkiLK~s~~s~wi~NiqL--~~~g~~f~~l~~~~~-d~~~i~ 241 (345)
T KOG2234|consen 169 PTGAKSESSAQNPFLGLVAVLVACFLSGF----AGVYFEKILKGSNVSLWIRNIQL--YFFGILFNLLTILLQ-DGEAIN 241 (345)
T ss_pred CCCccCCCcccchhhhHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHHH--HHHHHHHHHHHHhhc-cccccc
Confidence 333 367788999999999999999999 8999999999999999998 999 889999999999999 999998
Q ss_pred HhhcccCCcceeeehhHHHHHHHHHH
Q 020855 266 KEMNGYGEGRVSYLMTLIWTAVTWQI 291 (320)
Q Consensus 266 ~E~~~F~~G~~~Y~~~lv~~av~WQ~ 291 (320)
..+|..|.+..+ |..|.+|.
T Consensus 242 --~~gff~G~s~~v----w~vVl~~a 261 (345)
T KOG2234|consen 242 --EYGFFYGYSSIV----WLVVLLNA 261 (345)
T ss_pred --cCCccccccHHH----HHHHHHHh
Confidence 789999998754 55555554
No 2
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.83 E-value=1.1e-19 Score=169.06 Aligned_cols=172 Identities=23% Similarity=0.342 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
.+|-...+++++++++.+|.++-++++|+|++||++++|+|+.+||+|+++++|||+++.||.|++++++|.++.+.++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred CCC--CC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEeh-hHHHHHHHHHHHHHhHhhcc
Q 020855 188 SEN--TS------GVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLD-MQIYSSFVATCGCVVGLFAS 258 (320)
Q Consensus 188 s~~--~~------~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vle-mQi~~slvAt~~~~vGl~~s 258 (320)
.++ ++ +.++.++.+|+.+++.++.++|+ ...++||++|++..+.+++ +|+ ++.+.++..++++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~----agVy~E~~lK~~~~s~~~~N~qL--~~~gi~~~~~~~~~~ 166 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGF----AGVYFEKLLKRSNVSLWIQNMQL--YLFGILFNLLALLLS 166 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHH----HHHHHHHHhcccchhHHHHHHHH--HHHHHHHHHHHHhcc
Confidence 331 11 12356789999999999999999 7777899999988788886 888 678888888887776
Q ss_pred CCccchhHhhcccCCcceeeehhHHHHHHHHHHH
Q 020855 259 GEWKGLSKEMNGYGEGRVSYLMTLIWTAVTWQIS 292 (320)
Q Consensus 259 gd~~~i~~E~~~F~~G~~~Y~~~lv~~av~WQ~~ 292 (320)
||+++. .++|.+|.+.. +|..|..|..
T Consensus 167 -~~~~~~--~~g~f~G~~~~----~~~~i~~~a~ 193 (244)
T PF04142_consen 167 -DGSAIS--ESGFFHGYSWW----VWIVIFLQAI 193 (244)
T ss_pred -cccccc--cCCchhhcchH----HHHHHHHHHH
Confidence 887765 45799998653 5566666653
No 3
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.48 E-value=2.5e-12 Score=125.43 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=145.6
Q ss_pred chHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhcc
Q 020855 56 SAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLY 135 (320)
Q Consensus 56 ~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~y 135 (320)
..+++|.+- |=+-+..+++..=..-.+..-|..+.++.+ +......++--.-|+.+|++....|++...|+.|
T Consensus 30 ~~s~~l~~~----~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~---~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~y 102 (334)
T PF06027_consen 30 TFSSLLANK----GVNIPTFQSFFNYVLLALVYTPILLYRRGF---KKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQY 102 (334)
T ss_pred HHHHHHHhc----CccCcHHHHHHHHHHHHHHHhhhhhhcccc---ccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555443 666688888766544333333333322111 1111112344467889999999999999999999
Q ss_pred CchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 020855 136 LPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSL 215 (320)
Q Consensus 136 LpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL 215 (320)
.++++.+++.++-..|+++++++++|+|+++.++.++.+...|.+++...|....+++.+..+.++|..+++.|+.+||+
T Consensus 103 TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~ 182 (334)
T PF06027_consen 103 TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAV 182 (334)
T ss_pred ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877644333344556789999999999999999
Q ss_pred HHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchh
Q 020855 216 YLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLS 265 (320)
Q Consensus 216 ~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~ 265 (320)
+-.+. ||..|+.+ ..|+.-..++++++++.+-+++= |+++++
T Consensus 183 ~nV~~----E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~il-e~~~i~ 224 (334)
T PF06027_consen 183 SNVLE----EKLVKKAP---RVEFLGMLGLFGFIISGIQLAIL-ERSGIE 224 (334)
T ss_pred HHHHH----HHhcccCC---HHHHHHHHHHHHHHHHHHHHHhe-ehhhhh
Confidence 77666 55555555 46888888999999998877664 776654
No 4
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.46 E-value=1.2e-12 Score=128.71 Aligned_cols=193 Identities=18% Similarity=0.238 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCC
Q 020855 110 TLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (320)
Q Consensus 110 ~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~ 189 (320)
+.+..+..+|++|.+.||.|+.++.|..|+..+++.+|.-.||..++.+...+|||..++.+|.+...|.+++..+++..
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999988887766544
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHh---hccCCccchhH
Q 020855 190 NTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGL---FASGEWKGLSK 266 (320)
Q Consensus 190 ~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl---~~sgd~~~i~~ 266 (320)
.++.+.++..+|.+.++.+|++||.|..+. +|-..++. --++||++.++++-.-.+.+. ++= |+- .
T Consensus 237 -~~~~~a~~~llG~llaL~sA~~YavY~vll----k~~~~~eg--~rvdi~lffGfvGLfnllllwP~l~iL-~~~--~- 305 (416)
T KOG2765|consen 237 -NSDLPASRPLLGNLLALLSALLYAVYTVLL----KRKIGDEG--ERVDIQLFFGFVGLFNLLLLWPPLIIL-DFF--G- 305 (416)
T ss_pred -cccCCccchhHHHHHHHHHHHHHHHHHHHH----Hhhccccc--ccccHHHHHHHHHHHHHHHHhHHHHHH-HHh--c-
Confidence 445566778999999999999999999988 66555541 267899999988865555443 222 111 1
Q ss_pred hhcccC---Cccee--eehhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHhhccCc
Q 020855 267 EMNGYG---EGRVS--YLMTLIWTAVTWQISSVGLLGLVFEPGLLDGAEDLRIFLPL 318 (320)
Q Consensus 267 E~~~F~---~G~~~--Y~~~lv~~av~WQ~~~~G~~Glif~~SsL~sgv~~~~~lp~ 318 (320)
.++|. .++.. -...++++.++=-+|..|+ +++|+|.+-+-+++.+|+
T Consensus 306 -~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~----~lTs~Lv~TlgmSltIPL 357 (416)
T KOG2765|consen 306 -EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAV----LLTSPLVVTLGMSLTIPL 357 (416)
T ss_pred -cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHH----HhccchhheeeeeEeeeH
Confidence 23442 22322 2345788888876776664 689999999888888886
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.45 E-value=5e-12 Score=119.51 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=180.3
Q ss_pred HHhHHHHhHhCCCC-chhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 020855 58 ATLLGRLYYDKGGN-SKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYL 136 (320)
Q Consensus 58 ~~LL~r~Yf~~gG~-s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yL 136 (320)
+-+..++.-.+.++ ..|+-+++|.+.-.+.-.+......++ +.+..| ..-|+.++++....+.+-+.++.|+
T Consensus 16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP--KSRKIP-----LKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc--CCCcCh-----HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666 799999999998887666554432211 112222 2345666788888889999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCC-CCCCcchHHHHHHHHHHHHHHHH
Q 020855 137 PVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS-GVSKGNYVIGFLCTLGASATYSL 215 (320)
Q Consensus 137 pvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~-~~s~~~y~iGf~~tL~Asal~gL 215 (320)
|++|+.++-++++++++++++++.|+|.++.++.+++++++|.++.+++++++++. +..+.....|..+.+.+-++.|+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~ 168 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF 168 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887665543 33333344599999999999999
Q ss_pred HHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhc--cCCccchhHhhcccCCcceeeehhHHHHHHHHHHHH
Q 020855 216 YLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFA--SGEWKGLSKEMNGYGEGRVSYLMTLIWTAVTWQISS 293 (320)
Q Consensus 216 ~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~--sgd~~~i~~E~~~F~~G~~~Y~~~lv~~av~WQ~~~ 293 (320)
....-|..++|.. ++ ..|+-.+..+.++++....++. .||+.+- .+|-.....-+.-+....++=-++.
T Consensus 169 ~~~~qe~~~~~~~-~~----~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~----~~f~~~~p~~~~~l~~~s~~~~~g~ 239 (303)
T PF08449_consen 169 TGVYQEKLFKKYG-KS----PWELMFYTNLFSLPFLLILLFLLPTGEFRSA----IRFISAHPSVLLYLLLFSLTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHH----HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888888777643 33 2689999999999999999999 8888553 2332222223334444444444444
Q ss_pred hhhhhhhhhhhhhhhhhhHhhccC
Q 020855 294 VGLLGLVFEPGLLDGAEDLRIFLP 317 (320)
Q Consensus 294 ~G~~Glif~~SsL~sgv~~~~~lp 317 (320)
.+..-++=..|++...++.+++-+
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~ 263 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKF 263 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHH
Confidence 455556777888888888887643
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.10 E-value=3.7e-08 Score=92.50 Aligned_cols=190 Identities=16% Similarity=0.092 Sum_probs=128.5
Q ss_pred HHhHHHHhHhCCCCchhHHHHHHhhc-hhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccC
Q 020855 58 ATLLGRLYYDKGGNSKWMATFVQSAG-FPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYL 136 (320)
Q Consensus 58 ~~LL~r~Yf~~gG~s~Wl~t~vQtaG-fPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yL 136 (320)
-.++.+.=. ++.+-++..++.|-.. ..++.+. .....+++ .+..+|-....+.+|++.+.++.+.++|+.|.
T Consensus 17 ~~~~NK~~l-~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 17 FNIYNKKLL-NVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKR-----LKISSALLKLLLPVAIVHTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444333 3457788888888653 3333222 11111111 11223444555667777788888999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 020855 137 PVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLY 216 (320)
Q Consensus 137 pvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~ 216 (320)
++++++++.+++-.|++++++++.|||+++.++.++++.++|.++... + + . +....|++..+.|+..++++
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~-~--~-----~-~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASD-T--E-----L-SFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcC-C--c-----c-cccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987531 1 1 1 11357999999999999996
Q ss_pred HHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHhh
Q 020855 217 LSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKEM 268 (320)
Q Consensus 217 l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E~ 268 (320)
.-.. ||..+++.++ .+++..+....+.++.+...+..+|......|.
T Consensus 161 ~v~~----k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~ 207 (302)
T TIGR00817 161 NIFS----KKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGF 207 (302)
T ss_pred HHHH----HHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHH
Confidence 5554 6655422221 356667777777777777666665544444333
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.07 E-value=7.2e-08 Score=93.75 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhh-chhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHH
Q 020855 42 LRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSA-GFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGL 120 (320)
Q Consensus 42 ~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQta-GfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~ 120 (320)
+.+.+.++.-...+....+..+.=.+. -+-+|..++.|-. ++-+..+.....++++++ -+..++-..-.+.+|+
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPR----IKSLKLFLKNFLPQGL 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC----CCCHHHHHHHHHHHHH
Confidence 344445555555566666666655544 3448999999965 454443333222222111 1111222233334455
Q ss_pred HHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchH
Q 020855 121 LLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYV 200 (320)
Q Consensus 121 l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~ 200 (320)
+....+.....|+++.|+|.++++-++.=+||+++++++.|||+++.++.++++.++|..+...++ . +...
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~--------~-~~~~ 193 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKE--------L-HFTW 193 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheeccc--------c-hhHH
Confidence 444445555599999999999999999999999999999999999999999999999999965321 1 1247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cceeEEehhHHHHHHHHHHHHHhHhhcc
Q 020855 201 IGFLCTLGASATYSLYLSLLQLSFEKVIKK-ETFSVVLDMQIYSSFVATCGCVVGLFAS 258 (320)
Q Consensus 201 iGf~~tL~Asal~gL~l~L~ql~feKv~k~-~t~~~vlemQi~~slvAt~~~~vGl~~s 258 (320)
.|+++++.|++.++++.-+.+...++...+ +.+. .+++..+..+++.++++-..+..
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lp~~~~~ 251 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLT-ASNIYMLLTLIASLISLPLVLFF 251 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888885544331100 0111 22344444666666665544433
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.89 E-value=2.7e-07 Score=83.68 Aligned_cols=127 Identities=19% Similarity=0.216 Sum_probs=95.3
Q ss_pred HHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcch
Q 020855 120 LLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNY 199 (320)
Q Consensus 120 ~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y 199 (320)
+..+.++.+|-+|+.|.|+++-+++.+++=.||++++.++.|||.++.++.++++..+|..++..+++ .+.+
T Consensus 55 ~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--------~~~~ 126 (260)
T TIGR00950 55 LQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--------LSIN 126 (260)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--------cccc
Confidence 34567889999999999999999999999999999999999999999999999999999998763321 1235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccC
Q 020855 200 VIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASG 259 (320)
Q Consensus 200 ~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sg 259 (320)
..|+...+.|++.++.+.... ||..++.+.. ...+..+..+++++++..-....+
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~----k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 181 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLY----KRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLG 181 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999976665 6544332211 112221335666666655555443
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.73 E-value=2.3e-06 Score=84.13 Aligned_cols=164 Identities=14% Similarity=0.073 Sum_probs=110.2
Q ss_pred hccchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhh
Q 020855 53 VGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYG 132 (320)
Q Consensus 53 ~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~g 132 (320)
++..+=..+.|.-+++|=+..-+..+=-..+..+++|..+..+++++ .++..+|.....+.+|++-...+.++.+|
T Consensus 23 ~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~----~~~~~~~~~~~l~l~g~~g~~~~~~~~~g 98 (358)
T PLN00411 23 TSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS----LPPLSVSILSKIGLLGFLGSMYVITGYIG 98 (358)
T ss_pred HHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc----cCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567888888666666554444444445555443333221111 11112233333444555544556678899
Q ss_pred hccCchhhHHHHHhhhhHHHHHHHHHH------hccCCchHHHHHHHHHHHHHHHhhccCCCC---------------C-
Q 020855 133 LLYLPVSTYSLLCATQLAFNAFFSFFL------NSQKFTPFIFNSLVLLTISATLLAVNADSE---------------N- 190 (320)
Q Consensus 133 l~yLpvsT~sLi~sTQL~FTAiFs~~i------~~qkft~~~insvVLLt~~a~LL~l~~~s~---------------~- 190 (320)
++|.|++..+++.+++=+||+++++++ .++|.++.++.++++..+|+.++..+.+.+ +
T Consensus 99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~ 178 (358)
T PLN00411 99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSP 178 (358)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccc
Confidence 999999999999999999999999999 699999999999999999999876543211 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 020855 191 TSGVSKGNYVIGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 191 ~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ 220 (320)
+......+..+|..+.++|++.++++.-+.
T Consensus 179 ~~~~~~~~~~lG~~l~l~aa~~wa~~~il~ 208 (358)
T PLN00411 179 PLSSSNSDWLIGGALLTIQGIFVSVSFILQ 208 (358)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223345779999999999999987666
No 10
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.66 E-value=1.2e-05 Score=75.58 Aligned_cols=163 Identities=17% Similarity=0.097 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhh-chhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHH
Q 020855 39 KWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSA-GFPILLPILCCFSNGSRSANTTDPKISTLVCLYVA 117 (320)
Q Consensus 39 ~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQta-GfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~ 117 (320)
|.-+-++...+++.+=-..+.+..|.=.+ +-+++..+..... +..++++ ++..++++ . + .+|.......
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~----~--~-~~~~~~~~~~ 73 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLA-FLLLRGHP----L--P-TLRQWLNAAL 73 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHH-HHHHhCCC----C--C-cHHHHHHHHH
Confidence 33444445555544444567777785444 4566666666655 4444444 33322211 1 1 1223333455
Q ss_pred HHHHH-HHhHHHHHhhh-ccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 020855 118 FGLLL-TGDNMMYSYGL-LYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVS 195 (320)
Q Consensus 118 lG~l~-a~~N~lYa~gl-~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s 195 (320)
.|.+. ...+.++.++. .+.|++..+++..++=.|+++++.+ +|||.++.++.++++-.+|..++..+++.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~------- 145 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL------- 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc-------
Confidence 66554 45667777888 9999999999999999999999986 69999999999999999998887433211
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH
Q 020855 196 KGNYVIGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 196 ~~~y~iGf~~tL~Asal~gL~l~L~ 220 (320)
+....|....+.|+..|+++.-..
T Consensus 146 -~~~~~G~l~~l~a~~~~a~~~~~~ 169 (292)
T PRK11272 146 -SGNPWGAILILIASASWAFGSVWS 169 (292)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHH
Confidence 113579999999999999976554
No 11
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.57 E-value=4.5e-07 Score=81.89 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=120.6
Q ss_pred HHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q 020855 118 FGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKG 197 (320)
Q Consensus 118 lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~ 197 (320)
+..+++.+|.+.-+++.+++..+++.. +.|++.++++...+.++|++..|+-++.++..|....+.+++.++ ....+
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g 81 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFG 81 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--ccccc
Confidence 466788888888899999999999999 999999999999999999999999999999998887665443322 22334
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEeh-hHHHHHHHHHHHHHhHhhccCCccchhHhhcccCCcce
Q 020855 198 NYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLD-MQIYSSFVATCGCVVGLFASGEWKGLSKEMNGYGEGRV 276 (320)
Q Consensus 198 ~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vle-mQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~~G~~ 276 (320)
..+.|..+.++|+...|+ .-.+.||..|+.+-....+ +|+ .+........++..+ |++.++ ..+|..|..
T Consensus 82 ~~~~g~~~~l~a~~~~~~----~~~y~e~~~k~~~~~~~~~~~~l--~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~ 152 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGF----AGVYFEKILKDGDTMFWSRNLQL--PLFGLFSTFSVLLWS-DGTLIS--NFGFFIGYP 152 (222)
T ss_pred cHHHHHHHHHHHHHHHhh----hHHHHHHcccCCCCchHHHHHHH--HHHHHHHHHHHHhhc-ccchhh--ccCcccCCc
Confidence 678999999999999888 5555677666543333332 444 334444445555554 554444 245667766
Q ss_pred eeehhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 020855 277 SYLMTLIWTAVTWQISSVGLLGLVFEPGLLDGAED 311 (320)
Q Consensus 277 ~Y~~~lv~~av~WQ~~~~G~~Glif~~SsL~sgv~ 311 (320)
..+..++.+...=|.| +-+++-..++..-+++
T Consensus 153 ~~~~~~~~~~a~~~~~---v~~vlk~~~~~~~~~~ 184 (222)
T TIGR00803 153 TAVWIVGLLNVGGGLC---IGGVVRYADNTTKSFV 184 (222)
T ss_pred hHHHHHHHHHHhcCce---eeehhHHhHHHHHHHH
Confidence 6655555444333333 2233444444433333
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.48 E-value=1.1e-05 Score=74.03 Aligned_cols=149 Identities=12% Similarity=0.052 Sum_probs=101.4
Q ss_pred chHHhHHHHhHhCCCCchhHHHHHHh-hchhhHHHHhhhcccCCC-CCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhh
Q 020855 56 SAATLLGRLYYDKGGNSKWMATFVQS-AGFPILLPILCCFSNGSR-SANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGL 133 (320)
Q Consensus 56 ~~~~LL~r~Yf~~gG~s~Wl~t~vQt-aGfPlll~pl~~~~~~~~-~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl 133 (320)
....+..|.. .+ -+.+...+... -|.+++++.....+++++ +++.+.+..++........|++.+.++.+|.+|.
T Consensus 15 g~~~~~~k~~--~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 91 (256)
T TIGR00688 15 GYMYYYSKLL--KP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAV 91 (256)
T ss_pred HHHHHHHHHh--cc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667752 22 55555555555 356665443333222110 0010111122344455566777889999999999
Q ss_pred ccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHHH
Q 020855 134 LYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATY 213 (320)
Q Consensus 134 ~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~Asal~ 213 (320)
+|.|+++.+++.++.=+|+++++.++.|||+++.++.++++-.+|.+++..+ +++. . ++.++|++.|
T Consensus 92 ~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~~--------~----~~~l~aa~~~ 158 (256)
T TIGR00688 92 NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGSL--------P----WEALVLAFSF 158 (256)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCCc--------h----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887532 1110 1 3467788888
Q ss_pred HHHHHHH
Q 020855 214 SLYLSLL 220 (320)
Q Consensus 214 gL~l~L~ 220 (320)
+++.-..
T Consensus 159 a~~~i~~ 165 (256)
T TIGR00688 159 TAYGLIR 165 (256)
T ss_pred HHHHHHH
Confidence 8866554
No 13
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.43 E-value=1.6e-05 Score=75.01 Aligned_cols=112 Identities=15% Similarity=0.264 Sum_probs=83.7
Q ss_pred HHHhhhcc-CchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHH
Q 020855 128 MYSYGLLY-LPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCT 206 (320)
Q Consensus 128 lYa~gl~y-LpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~t 206 (320)
+|-.++.| +|++..+++.+++=.++.++++++.|||+++.++.++++..+|..++..++.++ ......|..++
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~~~~~~G~~l~ 148 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------QHVAMLGFMLT 148 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------cchhHHHHHHH
Confidence 44467776 799999999999999999999999999999999999999999998876332111 11125799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHH
Q 020855 207 LGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATC 249 (320)
Q Consensus 207 L~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~ 249 (320)
+.|++.++++.-+. ||..++.+....+.++.+..+++.+
T Consensus 149 l~aal~~a~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (299)
T PRK11453 149 LAAAFSWACGNIFN----KKIMSHSTRPAVMSLVVWSALIPII 187 (299)
T ss_pred HHHHHHHHHHHHHH----HHHhcccCccchhHHHHHHHHHHHH
Confidence 99999999977766 5654443333344556555555443
No 14
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.31 E-value=7.7e-06 Score=64.92 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHH-HHHhHHHHHhhhccC
Q 020855 58 ATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLL-LTGDNMMYSYGLLYL 136 (320)
Q Consensus 58 ~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l-~a~~N~lYa~gl~yL 136 (320)
...+.|.-.++ -+..++..+-...+.+ +++...+...++ .....++-....+.+|++ .+..+.+|.+|+++.
T Consensus 6 ~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 6 YSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKP-----FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhcccc-----ccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 34555555555 5566777777777777 544444433221 111122333445556666 588999999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Q 020855 137 PVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLL 182 (320)
Q Consensus 137 pvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL 182 (320)
|++..+.+..++..+++++++++.+||+++.++.++++..+|.+++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 15
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=9.1e-05 Score=66.73 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHH-HHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 020855 114 LYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSF-FLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS 192 (320)
Q Consensus 114 ~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~-~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~ 192 (320)
..+.-++..+..+.+|-.+..|+|+++.+++.++.-.|+++++. ++.++|+++.++.++++..+|..++..++..+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~ 151 (292)
T COG0697 72 LLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGIL 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhH
Confidence 44445666778889999999999999999999999999999996 77799999999999999999999877554432211
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 020855 193 GVSKGNYVIGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 193 ~~s~~~y~iGf~~tL~Asal~gL~l~L~ 220 (320)
+..|....+.+++.++++....
T Consensus 152 ------~~~g~~~~l~a~~~~a~~~~~~ 173 (292)
T COG0697 152 ------SLLGLLLALAAALLWALYTALV 173 (292)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999755555
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.23 E-value=2.6e-05 Score=74.00 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHh-hhhHHHHHHHHHHhccCCchHH----HHHHHHHHHHHHHhh
Q 020855 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCA-TQLAFNAFFSFFLNSQKFTPFI----FNSLVLLTISATLLA 183 (320)
Q Consensus 109 ~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~s-TQL~FTAiFs~~i~~qkft~~~----insvVLLt~~a~LL~ 183 (320)
+++....+.-|++++..|+.|-.+.+|+.+++...+++ .|..+..+++.++.|+|.|+.+ +.++++..+|..+++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 57888899999999999999999999999999999998 9999999999999999999999 999999999999987
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 020855 184 VNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQ 221 (320)
Q Consensus 184 l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~q 221 (320)
.+++++.. +.++.++..|.+..+.+++.|+++....+
T Consensus 136 ~~~~~~~~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 136 RSKDKSAG-IKSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred eccccccc-cccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 66433221 11112345699999999999999888885
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.22 E-value=0.00023 Score=66.52 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 020855 115 YVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGV 194 (320)
Q Consensus 115 y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~ 194 (320)
.+.-|+..+..++++.+|+.+.|++..+.+..++-.++++++.++.|||+++.++.++++...|..++..+++ ++
T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~-~~---- 140 (281)
T TIGR03340 66 LAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF-AQ---- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc-cc----
Confidence 3344556778888888999999999999999999999999999999999999999999999999998764321 11
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHH
Q 020855 195 SKGNYVIGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 195 s~~~y~iGf~~tL~Asal~gL~l~L~ 220 (320)
. ...|+...+.|+..++.+.-+.
T Consensus 141 ~---~~~g~~~~l~aal~~a~~~i~~ 163 (281)
T TIGR03340 141 H---RRKAYAWALAAALGTAIYSLSD 163 (281)
T ss_pred c---chhHHHHHHHHHHHHHHhhhhc
Confidence 1 1347777888888888866543
No 18
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.21 E-value=1e-05 Score=66.26 Aligned_cols=75 Identities=20% Similarity=0.365 Sum_probs=66.9
Q ss_pred HHHHHHHHHH-HhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCC
Q 020855 114 LYVAFGLLLT-GDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (320)
Q Consensus 114 ~y~~lG~l~a-~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~ 189 (320)
..+..|++.. .++.+|.+|.+|.| +..+.+.++.-+|+++++.++.|||+++..+.++.+.++|.++++.++.++
T Consensus 36 ~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 36 WLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3455567665 88999999999999 588899999999999999999999999999999999999999999887554
No 19
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.16 E-value=8.2e-05 Score=70.25 Aligned_cols=91 Identities=11% Similarity=0.159 Sum_probs=76.1
Q ss_pred HHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 020855 117 AFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSK 196 (320)
Q Consensus 117 ~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~ 196 (320)
.-++..+.++.+|-+|..|+|++..+++..+.=+|++++++++.|||+++.++.++++-.+|.+++.-+ +++.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~~------ 150 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGSL------ 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCCc------
Confidence 445667889999999999999999999999999999999999999999999999999999999987532 1110
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q 020855 197 GNYVIGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 197 ~~y~iGf~~tL~Asal~gL~l~L~ 220 (320)
....++|++.|+++.-+.
T Consensus 151 ------~~~~l~aa~~~a~~~i~~ 168 (296)
T PRK15430 151 ------PIIALGLAFSFAFYGLVR 168 (296)
T ss_pred ------cHHHHHHHHHHHHHHHHH
Confidence 135677889999977554
No 20
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.10 E-value=9.5e-06 Score=68.14 Aligned_cols=115 Identities=16% Similarity=0.042 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHhhcccC--Cc-ceee
Q 020855 202 GFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKEMNGYG--EG-RVSY 278 (320)
Q Consensus 202 Gf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~--~G-~~~Y 278 (320)
|++++++|++++++...++|..++|..++....-.++|+.+++..+++++....+..++++..+.+.+.++ .+ ...+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 89999999999999999999988885333333447899999999999999999999977765554443332 22 5588
Q ss_pred ehhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHhhcc
Q 020855 279 LMTLIWTAVTWQISSVGLLGLVFEPGLLDGAEDLRIFL 316 (320)
Q Consensus 279 ~~~lv~~av~WQ~~~~G~~Glif~~SsL~sgv~~~~~l 316 (320)
+..++.+++.|.+..+....++-.+|++.-+|+..+--
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~ 118 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKR 118 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHH
Confidence 99999999999999999999999999999999887643
No 21
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.02 E-value=0.00037 Score=65.80 Aligned_cols=105 Identities=9% Similarity=0.105 Sum_probs=78.7
Q ss_pred HHHhHHHHHhhh----ccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCC--CC
Q 020855 122 LTGDNMMYSYGL----LYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSG--VS 195 (320)
Q Consensus 122 ~a~~N~lYa~gl----~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~--~s 195 (320)
.+..+.++..|. .+.|+++.+++.+++=+|+++++.++.|||+++.++.++++-.+|.+++..++.+....+ .+
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 150 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINN 150 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhc
Confidence 445555544444 567888899999999999999999999999999999999999999998764432111100 11
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020855 196 KGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKK 230 (320)
Q Consensus 196 ~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~ 230 (320)
......|..+.+.|++.|+++.-+. ||..++
T Consensus 151 ~~~~~~G~~~~l~aa~~~A~~~v~~----k~~~~~ 181 (295)
T PRK11689 151 IASNPLSYGLAFIGAFIWAAYCNVT----RKYARG 181 (295)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHH----hhccCC
Confidence 1234579999999999999987777 664433
No 22
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.98 E-value=0.0012 Score=62.20 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=77.3
Q ss_pred HHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 020855 117 AFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSK 196 (320)
Q Consensus 117 ~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~ 196 (320)
..|++.+..|.++-++++|+|++..+++..|+-+|+++++ ++|..+.++ +.+..+|..++..++ .+. .
T Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~~--~~i~~~Gv~li~~~~-~~~-----~ 143 (293)
T PRK10532 76 FYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFVW--VVLAVLGLWFLLPLG-QDV-----S 143 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHHH--HHHHHHHHheeeecC-CCc-----c
Confidence 4566678888889899999999999999999988888876 356555554 444456665543221 111 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHh
Q 020855 197 GNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVV 253 (320)
Q Consensus 197 ~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~v 253 (320)
+....|..+.++|++.|+.+.-+. ||..++.+. ..+ .+.+++++++...
T Consensus 144 ~~~~~G~ll~l~aa~~~a~~~v~~----r~~~~~~~~---~~~-~~~~~~~~~~l~~ 192 (293)
T PRK10532 144 HVDLTGAALALGAGACWAIYILSG----QRAGAEHGP---ATV-AIGSLIAALIFVP 192 (293)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHH----HHHhccCCc---hHH-HHHHHHHHHHHHH
Confidence 123579999999999999977777 665444432 122 3344555544443
No 23
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.95 E-value=0.0001 Score=72.09 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC
Q 020855 107 KISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 107 ~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~ 186 (320)
..+|++..+++- |.|==+-++++.|.|+|-|+.+=++.++|-.+|+.+.--+|+.+.-...+.+...|..+....+
T Consensus 83 ~Lr~~aPtalat----a~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks 158 (349)
T KOG1443|consen 83 YLRRLAPTALAT----ALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS 158 (349)
T ss_pred HHHHhhhhhhhh----hcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence 356666665544 4455556699999999999999999999999999999999998776666666666655544433
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccceeEEehhHHHHHHHHHHHHHhHhhccCCccch
Q 020855 187 DSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVI--KKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGL 264 (320)
Q Consensus 187 ~s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~--k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i 264 (320)
.+-.+.||..+++||++.|+=-+..|...+|.- +++.+.+.-.+|-.|++ .....++...|-...+
T Consensus 159 ---------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~---~Ll~~~l~fEG~~~~~ 226 (349)
T KOG1443|consen 159 ---------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI---GLLPLSLLFEGLHLIT 226 (349)
T ss_pred ---------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH---HHHHHHHHHcccccch
Confidence 224689999999999999999999999999843 67778888788887753 3344555555555444
Q ss_pred hHhhc-ccCCcc
Q 020855 265 SKEMN-GYGEGR 275 (320)
Q Consensus 265 ~~E~~-~F~~G~ 275 (320)
..+.- +++.|.
T Consensus 227 ~s~~f~~~d~~~ 238 (349)
T KOG1443|consen 227 SSSIFRFQDTGL 238 (349)
T ss_pred hhhHHHhcCccH
Confidence 33332 334444
No 24
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.89 E-value=1.6e-05 Score=76.53 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=112.6
Q ss_pred HHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC-----C--CCCCCCCCCcch
Q 020855 127 MMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA-----D--SENTSGVSKGNY 199 (320)
Q Consensus 127 ~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~-----~--s~~~~~~s~~~y 199 (320)
.+| |++.|+|.+-.++|.-+.=.||++|++.++|+|||++.....+....|++|+.-++ + +++.+.++ ..
T Consensus 113 lmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~--~~ 189 (346)
T KOG4510|consen 113 LMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVE--YD 189 (346)
T ss_pred HHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccc--cc
Confidence 466 99999999999999999999999999999999999999999988888888776332 1 12211111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccc----------------
Q 020855 200 VIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKG---------------- 263 (320)
Q Consensus 200 ~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~---------------- 263 (320)
.-| ..|+....+..+-+=...+++-|+-.+.|.+. |.+++++++.++|+..=|+|+-
T Consensus 190 ~~g----t~aai~s~lf~asvyIilR~iGk~~h~~msvs---yf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvf 262 (346)
T KOG4510|consen 190 IPG----TVAAISSVLFGASVYIILRYIGKNAHAIMSVS---YFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVF 262 (346)
T ss_pred CCc----hHHHHHhHhhhhhHHHHHHHhhccccEEEEeh---HHHHHHHHHHHHHHhhccceecCccccceEEEEEehhh
Confidence 222 22222222222333344577667777777664 6678889999999999888763
Q ss_pred -----------hhHhhcccCCcceeee-hhHHHHHHHHHHHHhh-------hhhhhhhhhhhhhh
Q 020855 264 -----------LSKEMNGYGEGRVSYL-MTLIWTAVTWQISSVG-------LLGLVFEPGLLDGA 309 (320)
Q Consensus 264 -----------i~~E~~~F~~G~~~Y~-~~lv~~av~WQ~~~~G-------~~Glif~~SsL~sg 309 (320)
+++| +-|+.+-- -+=|--|+.||+.+-| .+|.+..+||-.--
T Consensus 263 gfigQIllTm~lQiE----rAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIE----RAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred hhHHHHHHHHHhhhh----ccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 3333 23443321 1223458899998876 46777777775543
No 25
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.47 E-value=0.0026 Score=53.30 Aligned_cols=125 Identities=19% Similarity=0.165 Sum_probs=96.4
Q ss_pred hHHhHHHHhHhC------CCCchhHHHHHHhhchhhHHHHhhhcccCCCCCC----CC--CCchhHHHHHHHHHHHHHHH
Q 020855 57 AATLLGRLYYDK------GGNSKWMATFVQSAGFPILLPILCCFSNGSRSAN----TT--DPKISTLVCLYVAFGLLLTG 124 (320)
Q Consensus 57 ~~~LL~r~Yf~~------gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~----~~--~p~~~~l~~~y~~lG~l~a~ 124 (320)
.-..+.+.++.+ +.+..=+..+.+..++++++|+.++....+.... .. .+..++....-+.-|++...
T Consensus 14 l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (153)
T PF03151_consen 14 LRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFL 93 (153)
T ss_pred HHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 334455555555 3344457788889999999998877644331111 11 01144667777777899999
Q ss_pred hHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Q 020855 125 DNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (320)
Q Consensus 125 ~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~L 181 (320)
.|+..-.-..+..+.|++++...|-+.+.+++.++.++++|+.++.++++.++|..+
T Consensus 94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999999999999999999999999998765
No 26
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.46 E-value=0.0013 Score=54.73 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=60.9
Q ss_pred HHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 120 LLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 120 ~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
+.++...++++++++++|.|+...+-++..+++++.++++.+||+|+.++.++++..+|.++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55778889999999999999999888899999999999999999999999999999999998874
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.32 E-value=0.0028 Score=60.22 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=90.4
Q ss_pred cchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhc
Q 020855 55 QSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLL 134 (320)
Q Consensus 55 ~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~ 134 (320)
.....+..|.. +-+.+-.++.|..|..+--..+++.+. + . +|..++.....+..|++++..|.+|..|..
T Consensus 164 y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~---~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~ 233 (290)
T TIGR00776 164 YLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGHI-L--A---KPLKKYAILLNILPGLMWGIGNFFYLFSAQ 233 (290)
T ss_pred HHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHHh-c--c---cchHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555532 256677777777765554333333221 1 1 233444555566699999999999999999
Q ss_pred -cCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHH----HHHHHHHHHHHHhhc
Q 020855 135 -YLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIF----NSLVLLTISATLLAV 184 (320)
Q Consensus 135 -yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~i----nsvVLLt~~a~LL~l 184 (320)
++++++.+.+.+..-..+.++++++.+|++++.++ .+.++...|+.++++
T Consensus 234 ~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 234 PKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999 999999999988765
No 28
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.32 E-value=0.0078 Score=54.58 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=75.8
Q ss_pred hHHhHHHHhHhCCCCch-hHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHH-HHHhHHHHHhhhc
Q 020855 57 AATLLGRLYYDKGGNSK-WMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLL-LTGDNMMYSYGLL 134 (320)
Q Consensus 57 ~~~LL~r~Yf~~gG~s~-Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l-~a~~N~lYa~gl~ 134 (320)
....+.|....+-+... .+..+....|.++++|.......+ ... .++....-+.+|++ ......+|.++..
T Consensus 142 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 214 (260)
T TIGR00950 142 LGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN----PQA---LSLQWGALLYLGLIGTALAYFLWNKGLT 214 (260)
T ss_pred HHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC----CCc---chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555565554433323 333344455555555544432211 111 11222222333444 3456678889999
Q ss_pred cCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 020855 135 YLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISA 179 (320)
Q Consensus 135 yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a 179 (320)
++|+++.+.+..++-.+++++++++.++|+++.++.+.++...|.
T Consensus 215 ~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 215 LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988764
No 29
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.27 E-value=0.013 Score=55.21 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=60.6
Q ss_pred HHHHH-HHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhcc
Q 020855 117 AFGLL-LTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (320)
Q Consensus 117 ~lG~l-~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~ 185 (320)
.+|+. ......+|.+++++.|+++.+++...|-.|++++++++.++++++.++.+.++...|..+....
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34555 3455668999999999999999999999999999999999999999999999999988887544
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.25 E-value=0.01 Score=58.69 Aligned_cols=77 Identities=6% Similarity=-0.016 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCC
Q 020855 111 LVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (320)
Q Consensus 111 l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~ 189 (320)
+..+|.+++ .+..-++++++..+++++..++..-.+=+|++++++++.++++++.++.+.++...|..+...+...|
T Consensus 257 ~~i~y~~i~--t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 257 ITIVTMAII--TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 345565443 45566688899999999999999999999999999999999999999999999999988876554433
No 31
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.05 E-value=0.012 Score=57.47 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=83.6
Q ss_pred CchhHHHHHHHHHHHH-HHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 106 PKISTLVCLYVAFGLL-LTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 106 p~~~~l~~~y~~lG~l-~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
|..|+++.. +++. .+...+|| .|+.+..+|.|+.+--.-++|+++|+.-++++++++.+|.++.-...|.+.++.
T Consensus 83 pf~p~lfl~---Pal~Di~gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 83 PFNPVLFLP---PALCDIAGSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred CCCcceecC---hHHHHHhhhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 544555444 2222 34556778 999999999999999999999999999999999999999999999999888876
Q ss_pred cCCC-CCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 020855 185 NADS-ENTSGVSKGNYVIGFLCTLGASATYSLYLSL 219 (320)
Q Consensus 185 ~~~s-~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L 219 (320)
.|-. +..+-...++-+.|..+.+.|-...+.-...
T Consensus 159 ~d~~~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~ 194 (372)
T KOG3912|consen 159 LDVHLVTDPYTDYSSIITGDLLIIIAQIIVAIQMVC 194 (372)
T ss_pred eecccccCCccccccchhhhHHHHHHHHHHHHHHHH
Confidence 5421 1112222346799999999999988874333
No 32
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.05 E-value=0.017 Score=55.65 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhccCchhhH-HHHHhhhhHHHHHHHHHHhccCCchHHH----HHHHHHHHHHHHhh
Q 020855 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTY-SLLCATQLAFNAFFSFFLNSQKFTPFIF----NSLVLLTISATLLA 183 (320)
Q Consensus 109 ~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~-sLi~sTQL~FTAiFs~~i~~qkft~~~i----nsvVLLt~~a~LL~ 183 (320)
++.+..++.-|+.|+.-+..--.++.++.+|.- =+-...||..|+++.+++.++--+..++ .|++++.+|+.+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 488899999999999999888888888776643 3334899999999999999997775554 59999999999988
Q ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 020855 184 VNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQL 222 (320)
Q Consensus 184 l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql 222 (320)
.++++++.+ +++++..-|....+.++..|.+|....+.
T Consensus 122 ~~~~~~~~~-~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 122 YQDKKSDKS-SSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred ccccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 776654422 23556677888999999999999888755
No 33
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.95 E-value=0.005 Score=60.33 Aligned_cols=195 Identities=16% Similarity=0.200 Sum_probs=122.2
Q ss_pred hHHHHHHHHHHHHhccchHHhHHHHhHhC--CCCchhHHHHHHhhchhhH-HHHhhhcccCCCCCCCCCCchhHHHHHHH
Q 020855 40 WWLRVILYVVCLLVGQSAATLLGRLYYDK--GGNSKWMATFVQSAGFPIL-LPILCCFSNGSRSANTTDPKISTLVCLYV 116 (320)
Q Consensus 40 ~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~--gG~s~Wl~t~vQtaGfPll-l~pl~~~~~~~~~~~~~~p~~~~l~~~y~ 116 (320)
+.....+++.+=.+.+ .+..+.+-|=-+ |++=+|.-|.++.+-=-+. +....+ ..+++++.+++...++++.
T Consensus 14 ~~~~~~~~~~~w~~~~-v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l-~~~~~~~~~~~~~~~~llp--- 88 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVLS-VGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVL-KLVPPSKISSKLPLRTLLP--- 88 (316)
T ss_pred hhHHHHHHHHHHhhhh-eeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCCCccccccchHHHHH---
Confidence 3444545555544444 444444444444 8888998888854432222 222222 2221111111112334444
Q ss_pred HHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Q 020855 117 AFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSK 196 (320)
Q Consensus 117 ~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~ 196 (320)
+|+..+....+=+.++.|.|||+++.+=++.-.||.++++++.++++++....+++..+.|.++-... +.
T Consensus 89 -l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~---------e~ 158 (316)
T KOG1441|consen 89 -LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT---------EL 158 (316)
T ss_pred -HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec---------cc
Confidence 45555566677778999999999999999999999999999999999999999999888887774432 22
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccce-eEEehhHHHHHHHHHHHHHh
Q 020855 197 GNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETF-SVVLDMQIYSSFVATCGCVV 253 (320)
Q Consensus 197 ~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~-~~vlemQi~~slvAt~~~~v 253 (320)
+-...|+++++++-+.+.+-.-+. +|..+++.. .-.|+.--+++-++.++.++
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~----~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~ 212 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILS----KKLLTSKGESLNSMNLLYYTAPISLIFLLI 212 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH----HHhhhccccccCchHHHHHhhhHHHHHHhc
Confidence 246999999999999999855555 444422111 11334444555555555554
No 34
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.79 E-value=0.048 Score=54.16 Aligned_cols=109 Identities=11% Similarity=0.154 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhhhccCchh-hHHHHHhhhhHHHHHHHHHHhcc-------CCchHHHHHHHHHHHHHH
Q 020855 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPVS-TYSLLCATQLAFNAFFSFFLNSQ-------KFTPFIFNSLVLLTISAT 180 (320)
Q Consensus 109 ~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvs-T~sLi~sTQL~FTAiFs~~i~~q-------kft~~~insvVLLt~~a~ 180 (320)
++.....+.-|++++.-|..+-.+.+|+-+| +..+-..+||+++.++..++..+ +.-..-+.+++++++|.+
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999999998 46677789999999999888542 222457889999999999
Q ss_pred Hhhc----cCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 020855 181 LLAV----NADSENTSGVSKGNYVIGFLCTLGASATYSLYL 217 (320)
Q Consensus 181 LL~l----~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~l 217 (320)
+.+. .|.+++.++.++++..-|....+.+..+|+.+.
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 9987 544332222456788999999999999999987
No 35
>PRK11689 aromatic amino acid exporter; Provisional
Probab=96.75 E-value=0.034 Score=52.56 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=60.9
Q ss_pred HHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 118 FGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 118 lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
.|+..+...++|.++++++|+++.+.+...+-.+++++++++.+|++|+.++.+.++..+|..+...
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3455677889999999999999999999999999999999999999999999999999999877543
No 36
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=96.72 E-value=0.0024 Score=59.71 Aligned_cols=113 Identities=22% Similarity=0.384 Sum_probs=92.4
Q ss_pred HHHHHHHH-HHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCC
Q 020855 110 TLVCLYVA-FGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (320)
Q Consensus 110 ~l~~~y~~-lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s 188 (320)
|++..|.. +-++|...||+|-.++..+.+|.-|-+.+-.-+|--+.+.+.++.||.-+.+.|+++-.-|.++++--
T Consensus 50 k~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~--- 126 (290)
T KOG4314|consen 50 KLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA--- 126 (290)
T ss_pred eeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec---
Confidence 44444432 35678899999999999999999999999999999999999999999999999999988888876632
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccce
Q 020855 189 ENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETF 233 (320)
Q Consensus 189 ~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~ 233 (320)
+++.+..++|..|+++.+...++ -...|+..+...+|
T Consensus 127 ----DN~~a~e~iGi~~AV~SA~~aAl----YKV~FK~~iGnAn~ 163 (290)
T KOG4314|consen 127 ----DNEHADEIIGIACAVGSAFMAAL----YKVLFKMFIGNANF 163 (290)
T ss_pred ----cchhhhhhhhHHHHHHHHHHHHH----HHHHHHHHhccCcc
Confidence 23455679999999999998888 45666887776653
No 37
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.027 Score=54.95 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=148.6
Q ss_pred ccchhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCc--hhHHHHHHhhchhhHHHHhh-hcccCCCCCCCCCCchhHHH
Q 020855 36 KHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNS--KWMATFVQSAGFPILLPILC-CFSNGSRSANTTDPKISTLV 112 (320)
Q Consensus 36 k~~~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s--~Wl~t~vQtaGfPlll~pl~-~~~~~~~~~~~~~p~~~~l~ 112 (320)
.+..+|.--.+|+.-++.+-..---+..+-|+.-|=| -|.-|++|-.=....-...+ .... ++ ..-|+.
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~-k~---r~iP~r---- 107 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQT-KR---RVIPWR---- 107 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecc-cc---eecchh----
Confidence 3455688888888878877777777788878777766 79999999532211111111 1111 11 122332
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCC
Q 020855 113 CLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS 192 (320)
Q Consensus 113 ~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~ 192 (320)
.|..++.+.-..-=|-+-++.||..-|--+--.+|++=-.+-+.||-++|-...-..|-.++.+|-++-.+.|+...
T Consensus 108 -tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s-- 184 (367)
T KOG1582|consen 108 -TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS-- 184 (367)
T ss_pred -HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC--
Confidence 45555555544444555677788888888888899999999999999999999999999999999998887765443
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCc
Q 020855 193 GVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEW 261 (320)
Q Consensus 193 ~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~ 261 (320)
.+-..+|..+.-+|=..=+++.-+-|-.+++ .+.+ .+||-+|.--++.++..++|..+||.
T Consensus 185 ---PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~-~~~s----s~EmvfySy~iG~vflf~~mvlTge~ 245 (367)
T KOG1582|consen 185 ---PNFNLIGVMMISGALLADAVIGNVQEKAMKM-NPAS----SSEMVFYSYGIGFVFLFAPMVLTGEL 245 (367)
T ss_pred ---CCcceeeHHHHHHHHHHHHHhhHHHHHHHhh-CCCC----cceEEEeeecccHHHHHHHHHhcccc
Confidence 3345789998888888888877777666664 2333 37999999899999999999999984
No 38
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=96.50 E-value=0.087 Score=49.62 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=59.0
Q ss_pred HHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhcc
Q 020855 122 LTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (320)
Q Consensus 122 ~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~ 185 (320)
.+...++|.++..++|+++.+++...+-++++++++++.+|++|+.++.+.++...|..++..+
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999999999999999887543
No 39
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.44 E-value=0.01 Score=57.32 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=62.0
Q ss_pred HHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCC
Q 020855 121 LLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN 190 (320)
Q Consensus 121 l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~ 190 (320)
+++..+.+--.++.+.|.+.-+=+.+.++++|++++.+++++|+++..+.+.++..+|++++..+...++
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~ 128 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEE 128 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCC
Confidence 4456667777899999999999999999999999999999999999999999999999998887664443
No 40
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.32 E-value=0.1 Score=49.29 Aligned_cols=71 Identities=11% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Q 020855 113 CLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (320)
Q Consensus 113 ~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~ 183 (320)
...+..|+..+.-.++|.++++++|+++-+++.-.+-.++.++++++.+|++|+.++.+.++..++..+..
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444555677788999999999999999999999999999999999999999999999999888777654
No 41
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.30 E-value=0.041 Score=46.97 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=59.3
Q ss_pred HHHHHHhHHHHHhhhccCchhh-HHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 119 GLLLTGDNMMYSYGLLYLPVST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 119 G~l~a~~N~lYa~gl~yLpvsT-~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
-+.++..=++.+.++.++|.++ |++....-.+.+++.+.++.+|++|..++..+.++.+|.+++.+.+.
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3445556688889999999986 66667889999999999999999999999999999999998876553
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.20 E-value=0.027 Score=52.63 Aligned_cols=67 Identities=16% Similarity=0.320 Sum_probs=59.4
Q ss_pred HHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHh
Q 020855 116 VAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLL 182 (320)
Q Consensus 116 ~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL 182 (320)
...++..+..+.+|.++++++|+++.+.....+-.++.++++++.+||.|+.++.+.++..+|..++
T Consensus 215 ~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 215 TLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 3344556678889999999999999999999999999999999999999999999999999988763
No 43
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=96.14 E-value=0.027 Score=52.98 Aligned_cols=63 Identities=11% Similarity=-0.082 Sum_probs=57.2
Q ss_pred HHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 122 LTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 122 ~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
+..-|.++.++..+++++|.++....+=.+++++++++.++++|+.++.+.++...|..+...
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 445567777899999999999999999999999999999999999999999999999888664
No 44
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=95.98 E-value=0.092 Score=51.16 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
.||.+...+.-+++++.|=.+|-|+..+=-+---|+=|=-.=.++.+...+..|+|+++.|+.||++-++|+.....+.+
T Consensus 68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 35888888999999999999999998874444445555555678999999999999999999999999999998877655
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ceeEEehhHH
Q 020855 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKE-TFSVVLDMQI 241 (320)
Q Consensus 188 s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~-t~~~vlemQi 241 (320)
+=. +.+++=|..||+|.-+ ||..|-+ -..+.+|+-.
T Consensus 148 ~lp-------------wval~la~sf~~Ygl~-----RK~~~v~a~~g~~lE~l~ 184 (293)
T COG2962 148 SLP-------------WVALALALSFGLYGLL-----RKKLKVDALTGLTLETLL 184 (293)
T ss_pred CCc-------------HHHHHHHHHHHHHHHH-----HHhcCCchHHhHHHHHHH
Confidence 421 3455556667776543 6655543 4566777544
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=0.19 Score=49.44 Aligned_cols=124 Identities=16% Similarity=0.256 Sum_probs=94.9
Q ss_pred HHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHH
Q 020855 127 MMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCT 206 (320)
Q Consensus 127 ~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~t 206 (320)
+-=..++.|+|+.+|+++=..-.+++|+-=..+.+.|++...+.|+++..+++...+..|.+.+ ..|..+.
T Consensus 92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~---------~~gY~w~ 162 (314)
T KOG1444|consen 92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN---------LRGYSWA 162 (314)
T ss_pred HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceec---------chhHHHH
Confidence 3345788999999999999999999999999999999999999999999999988776665543 2277777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccch
Q 020855 207 LGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGL 264 (320)
Q Consensus 207 L~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i 264 (320)
+..++.-......+ ||.++.... -..||-.|=++.+.....+=-+.-|||+++
T Consensus 163 ~~n~~~~a~~~v~~----kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l 215 (314)
T KOG1444|consen 163 LANCLTTAAFVVYV----KKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDAL 215 (314)
T ss_pred HHHHHHHHHHHHHH----HHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHH
Confidence 77777666644444 665554432 122455566777788888888899999843
No 46
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=95.65 E-value=0.092 Score=51.30 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhc-cCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCC-
Q 020855 114 LYVAFGLLLTGDNMMYSYGLL-YLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENT- 191 (320)
Q Consensus 114 ~y~~lG~l~a~~N~lYa~gl~-yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~- 191 (320)
-|+..=++....|..=++++. +.|.--.-+.-+-.+.-|.+.+.+++++|-+..|+.|++++|+|.++-.+.++.|-.
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 344444555555555555554 344444556667778889999999999999999999999999999987765544321
Q ss_pred ---------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCcc
Q 020855 192 ---------SGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWK 262 (320)
Q Consensus 192 ---------~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~ 262 (320)
+..+.....+|+.+-..|..+++...---|..|||.-|... |+-.|.-+...++-+ .. .+
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~-----EalFytH~LsLP~Fl----f~--~~ 214 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK-----EALFYTHFLSLPLFL----FM--GD 214 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH-----HHHHHHHHhccchHH----Hh--cc
Confidence 11233356788888888888888888888999999888776 888887655544332 12 23
Q ss_pred chhHhhcccCCcc-----------eeeehhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 020855 263 GLSKEMNGYGEGR-----------VSYLMTLIWTAVTWQISSVGLLGLVFEPGLLD 307 (320)
Q Consensus 263 ~i~~E~~~F~~G~-----------~~Y~~~lv~~av~WQ~~~~G~~Glif~~SsL~ 307 (320)
+|..|.+...++| .+-+.-|..+.++=-.|.=|+--|--++|||.
T Consensus 215 div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLT 270 (330)
T KOG1583|consen 215 DIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLT 270 (330)
T ss_pred hHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceE
Confidence 4555555444444 12233344444444445555555555555553
No 47
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=95.45 E-value=0.59 Score=44.18 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC
Q 020855 111 LVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 111 l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~ 186 (320)
...+|.++.. .+..-++|..+..++++++.+.+...+=.+++++++++.+|++|+.++.+.++...|..+...+.
T Consensus 215 ~~l~~l~i~~-t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 215 LSLMYLAFVA-TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 3344443222 33455678899999999999999999999999999999999999999999999998887755444
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=95.32 E-value=0.053 Score=47.47 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhh
Q 020855 70 GNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQL 149 (320)
Q Consensus 70 G~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL 149 (320)
|..+=++|.+.+----+.+...++..-+.....+.. +|-..--+.-|+..++.-++|=++++.=++|--.=+..+..
T Consensus 28 ~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~---~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~sv 104 (140)
T COG2510 28 GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG---PKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSV 104 (140)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccC---cceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccH
Confidence 344556666666443333333333332221111112 23333334457777888899989999888887777888999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 150 AFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 150 ~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
+|+++|+.+.+++|.|.-++..++|.++|++++++
T Consensus 105 vl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 105 VLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999998764
No 49
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=95.07 E-value=0.17 Score=42.48 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHhHHHHHhhhccCchhh-HHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Q 020855 119 GLLLTGDNMMYSYGLLYLPVST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (320)
Q Consensus 119 G~l~a~~N~lYa~gl~yLpvsT-~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~ 183 (320)
-+.++..-++.+.+++++|+++ |++-...-.+.+++.+.++.+|++|+.++.++.+...|.+++-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3445556688889999999986 7888888999999999999999999999999999999988763
No 50
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.00 E-value=0.21 Score=41.63 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=55.7
Q ss_pred HHHHhHHHHHhhhccCchhh-HHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 121 LLTGDNMMYSYGLLYLPVST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 121 l~a~~N~lYa~gl~yLpvsT-~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
.++..=++.+.+++++|.++ |++-...-.+.+++.++++.+||+|+.++..+.+..+|.+.+-+
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34445577889999999986 78888899999999999999999999999999999999988754
No 51
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=94.81 E-value=1.4 Score=39.68 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHH-HhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhcc
Q 020855 112 VCLYVAFGLLLT-GDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (320)
Q Consensus 112 ~~~y~~lG~l~a-~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~ 185 (320)
......+|++.. ..-+++.+++.+.|++..+.+..++..++.++++++.++++++.++.+..+.+.|..+...+
T Consensus 214 ~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 214 WLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 334444454444 46677779999999999999999999999999999999999999999998888888776554
No 52
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=94.80 E-value=0.31 Score=40.84 Aligned_cols=62 Identities=11% Similarity=0.262 Sum_probs=53.6
Q ss_pred hHHHHHhhhccCchhh-HHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC
Q 020855 125 DNMMYSYGLLYLPVST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 125 ~N~lYa~gl~yLpvsT-~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~ 186 (320)
.=++.+.++.++|.++ |.+-...-.+.+++.+.++.+|++|+.++..+.+..+|.+++.+.+
T Consensus 43 sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3366789999999986 5666778899999999999999999999999999999999986543
No 53
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.50 E-value=0.083 Score=47.69 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=83.3
Q ss_pred HhccchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcc--cCCCCCCCCCCc---hhHHHHHHHHHHHHHHHhH
Q 020855 52 LVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFS--NGSRSANTTDPK---ISTLVCLYVAFGLLLTGDN 126 (320)
Q Consensus 52 l~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~--~~~~~~~~~~p~---~~~l~~~y~~lG~l~a~~N 126 (320)
+.+++...=+...|.+++-+++=..-+.|...-|+..++..+.. .......+..+. ++.. ...++++.+...
T Consensus 90 ~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~ 166 (222)
T TIGR00803 90 VLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTA---VWIVGLLNVGGG 166 (222)
T ss_pred HHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchH---HHHHHHHHHhcC
Confidence 33344445567788888744432446677777777766642211 111000011111 1222 233345566677
Q ss_pred HHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Q 020855 127 MMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISA 179 (320)
Q Consensus 127 ~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a 179 (320)
.+.++-+.|.+..+.+.+.++...++++.++++.++++|+.++.+..+...|.
T Consensus 167 ~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~ 219 (222)
T TIGR00803 167 LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219 (222)
T ss_pred ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence 77889999999999999999999999999999999999999999998876653
No 54
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=94.31 E-value=0.38 Score=40.51 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHHHhhhccCchhh-HHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhcc
Q 020855 126 NMMYSYGLLYLPVST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (320)
Q Consensus 126 N~lYa~gl~yLpvsT-~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~ 185 (320)
=++.+.++.++|+++ |.+-...-.+-|++.++++.+||+++.++.++.|+..|.+.+-+.
T Consensus 44 f~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 44 FYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 377889999999987 788889999999999999999999999999999999998887543
No 55
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.08 E-value=0.95 Score=45.11 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=75.7
Q ss_pred CCCchhHHHHHHhhchh----hHHHHhhhcccCCCCC-----C--CCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCc
Q 020855 69 GGNSKWMATFVQSAGFP----ILLPILCCFSNGSRSA-----N--TTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLP 137 (320)
Q Consensus 69 gG~s~Wl~t~vQtaGfP----lll~pl~~~~~~~~~~-----~--~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLp 137 (320)
.|.+.|-..+.|..|-= +.-+.++....+|.++ + .++|...|-.+.++.-|++++.+|+.|.+|-..++
T Consensus 206 ~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g 285 (345)
T PRK13499 206 LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLG 285 (345)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777888888876322 2223333322111111 1 12333457778889999999999999999999996
Q ss_pred hhhHH----HHHhhhhHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHHHhhccC
Q 020855 138 VSTYS----LLCATQLAFNAFFSFFLNSQKFT------PFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 138 vsT~s----Li~sTQL~FTAiFs~~i~~qkft------~~~insvVLLt~~a~LL~l~~ 186 (320)
+++.- +-.|+-..+..+=.. +.||+=+ +..+..++++.+|+++++++.
T Consensus 286 ~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 286 AQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred CccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 66443 333666566666666 4676655 778888888888888887653
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=94.02 E-value=0.37 Score=41.31 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=53.1
Q ss_pred HHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHH--HhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 122 LTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFF--LNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 122 ~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~--i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
++..-+++.+++..+|+|+..=+.+.--.+.++.++. +.+|++|+.++.++++..+|..+++.++.
T Consensus 58 ~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 58 YALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 4444567778899999998776666655678888885 79999999999999999999999875443
No 57
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=0.095 Score=51.26 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
.+++.-..++.=.++..||+. +.|.|++-|.+=-+.-+.||.+++|.++|||=+..-..+-.+..+| .-+|++++
T Consensus 102 ~r~vlplsvVfi~mI~fnnlc----L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~G-F~lGvdqE 176 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNLC----LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILG-FGLGVDQE 176 (347)
T ss_pred HHhhcchhheeeeehhcccee----hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheeh-heeccccc
Confidence 356666777777888899965 6889999999888999999999999999999776654433332222 22233332
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHh
Q 020855 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKE 267 (320)
Q Consensus 188 s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E 267 (320)
+. ++.--.+|.+.-..||..-++ --++=+|++... -.-.-+...|.+..|.+..+--+..+||++++.
T Consensus 177 ~~-----~~~ls~~GvifGVlaSl~vAl----naiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~-- 244 (347)
T KOG1442|consen 177 GS-----TGTLSWIGVIFGVLASLAVAL----NAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVV-- 244 (347)
T ss_pred cc-----cCccchhhhHHHHHHHHHHHH----HHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHc--
Confidence 21 122235666666666554444 333334544332 222345778889999999999999999998865
Q ss_pred hcccCCcceeeehhHHHHHHHHHHHHhh
Q 020855 268 MNGYGEGRVSYLMTLIWTAVTWQISSVG 295 (320)
Q Consensus 268 ~~~F~~G~~~Y~~~lv~~av~WQ~~~~G 295 (320)
+|.+ .|+.=-||+..+|
T Consensus 245 --~~~~---------l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 245 --GFPH---------LPAIKFWILMTLS 261 (347)
T ss_pred --Cccc---------chHHHHHHHHHHH
Confidence 4422 3455567766654
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=92.25 E-value=1.1 Score=44.38 Aligned_cols=145 Identities=16% Similarity=0.089 Sum_probs=100.3
Q ss_pred cchhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHH
Q 020855 37 HYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYV 116 (320)
Q Consensus 37 ~~~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~ 116 (320)
+....+++++..++-.+ +..+... +.++-++.=+..++..-|+.+..|...+..++.- +.-++..+.....+
T Consensus 166 ~i~GDll~l~~a~lya~----~nV~~E~-~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i---~~~~w~~~~~~~~v 237 (334)
T PF06027_consen 166 PILGDLLALLGAILYAV----SNVLEEK-LVKKAPRVEFLGMLGLFGFIISGIQLAILERSGI---ESIHWTSQVIGLLV 237 (334)
T ss_pred cchhHHHHHHHHHHHHH----HHHHHHH-hcccCCHHHHHHHHHHHHHHHHHHHHHheehhhh---hccCCChhhHHHHH
Confidence 34445555555544433 3344554 4445555556688999999998887776543321 11223344555555
Q ss_pred HHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCC
Q 020855 117 AFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (320)
Q Consensus 117 ~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~ 189 (320)
+.++.......+-.+.+.+-++..+++=..|--.++.++..++-++|+++..+.|.++..+|-++....+..+
T Consensus 238 ~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 238 GYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 5555555666666778888888888888888889999999999999999999999999999999887766443
No 59
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.43 E-value=1.4 Score=42.90 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHhHH-HHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Q 020855 108 ISTLVCLYVAFGLLLTGDNM-MYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~-lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~L 181 (320)
.|.++.+....|++..+--| +=..++..+|.+||+++.+.+=++.|+-..+++.|..|+.||.++++...+++=
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 57888999999998877655 335789999999999999999999999999999999999999999998887763
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=91.28 E-value=4.6 Score=39.57 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHHhHHHHH----hhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Q 020855 120 LLLTGDNMMYS----YGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (320)
Q Consensus 120 ~l~a~~N~lYa----~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~ 183 (320)
+..+.-.++|+ +++.++++.|+++.+..|=.++.++++++.++++|+.++.+.++...|..+.+
T Consensus 280 ~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 280 FFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 33455566666 59999999999999999999999999999999999999999999999988764
No 61
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=91.23 E-value=0.054 Score=52.51 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=113.0
Q ss_pred CCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhh
Q 020855 70 GNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQL 149 (320)
Q Consensus 70 G~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL 149 (320)
=|-+=.+|++.=+---+..-|+..+++ +..+-..-=|+.+|+.=.-.||.-.-+++|..-.+-+++-.--.
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR~---------~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwai 115 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFRR---------KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAI 115 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhhh---------HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhh
Confidence 445667777766655555555554432 11111112288888888888999889999999988888888888
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC--CCCCCCCCCcchHHHHHHHHHHH-----------------
Q 020855 150 AFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD--SENTSGVSKGNYVIGFLCTLGAS----------------- 210 (320)
Q Consensus 150 ~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~--s~~~~~~s~~~y~iGf~~tL~As----------------- 210 (320)
.--.+.++++++-|-...++.+|+.+..|.+++.+.|- +|+. ...+...|....++++
T Consensus 116 p~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~a---ggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~ 192 (336)
T KOG2766|consen 116 PCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRA---GGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA 192 (336)
T ss_pred HHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccccc---CCCCCccCcEEEEecceeeeeccccHHHHHhcC
Confidence 88899999999999999999999999999988765431 2221 1112233333333322
Q ss_pred ---------HHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHH
Q 020855 211 ---------ATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCV 252 (320)
Q Consensus 211 ---------al~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~ 252 (320)
-+||-+.+.+|..+++ .+..+.+..-+|-.+..+.-+.||+
T Consensus 193 d~~elm~~lgLfGaIIsaIQ~i~~~-~~~~tl~w~~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 193 DRVELMGFLGLFGAIISAIQFIFER-HHVSTLHWDSAIFLYLRFALTMFLL 242 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhc-cceeeEeehHHHHHHHHHHHHHHHH
Confidence 4677777778888876 3444444444577776666666664
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=90.45 E-value=1 Score=36.10 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=33.4
Q ss_pred HHHHhHHHHHhhhccCchhhH-HHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHH
Q 020855 121 LLTGDNMMYSYGLLYLPVSTY-SLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLL 175 (320)
Q Consensus 121 l~a~~N~lYa~gl~yLpvsT~-sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLL 175 (320)
.++..-++++.+++++|.++- .+....-.+.+++.+.++.+|++|+.++.++.+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 456666999999999999975 6677788999999999999999999999988763
No 63
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.20 E-value=4 Score=40.84 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=103.4
Q ss_pred HHHHHHHHHhccchHHhHHHHh--HhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCC-C--CCCCchhHHHHHHHHH
Q 020855 44 VILYVVCLLVGQSAATLLGRLY--YDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSA-N--TTDPKISTLVCLYVAF 118 (320)
Q Consensus 44 v~~~~~~ll~G~~~~~LL~r~Y--f~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~-~--~~~p~~~~l~~~y~~l 118 (320)
+++-+++-.+|..++ +-+| |+|=-+=+|=+.|+--.=|.-++.|+......-+.- + +..| ...+...+..
T Consensus 5 ii~Gii~h~iGg~~~---~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~--~~~l~~~~l~ 79 (344)
T PF06379_consen 5 IILGIIFHAIGGFAS---GSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATP--ASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHHh---hhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCC--hhHHHHHHHH
Confidence 344455545543222 2233 333334478888888777888888876654322110 0 2222 1345556778
Q ss_pred HHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHH---hc--------cCCchHHHHHHHHHHHHHHHhhcc--
Q 020855 119 GLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFL---NS--------QKFTPFIFNSLVLLTISATLLAVN-- 185 (320)
Q Consensus 119 G~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i---~~--------qkft~~~insvVLLt~~a~LL~l~-- 185 (320)
|++|+.-+..|..+..||-+| |-.+--+..+++|..++ .. ++-....+..+++..+|.++.+.-
T Consensus 80 G~lWGIGgltfGl~mryLGvS---LG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVS---LGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHH---HHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 999999999999999999984 44455566666665544 12 223457888888888888887742
Q ss_pred -CCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 020855 186 -ADSENTSGVSKGNYVIGFLCTLGASATYSL 215 (320)
Q Consensus 186 -~~s~~~~~~s~~~y~iGf~~tL~Asal~gL 215 (320)
.+.|.+++.++.+...|...++.+.++++.
T Consensus 157 ~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~ 187 (344)
T PF06379_consen 157 MKEKELGEEAKEFNFKKGLIIAVLSGVMSAC 187 (344)
T ss_pred hhhhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 223334456677888999998887776665
No 64
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=89.40 E-value=5.3 Score=37.92 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=50.4
Q ss_pred hHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhc
Q 020855 125 DNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (320)
Q Consensus 125 ~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l 184 (320)
++..+ +-...-.+.|.+++..+.-++|.+++.++.++++|+.+|.++++...|..+-..
T Consensus 239 ~~~i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 239 QFFIF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 44555 346778888999999999999999999999999999999999998888877544
No 65
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=89.02 E-value=9.2 Score=38.00 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 020855 115 YVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGV 194 (320)
Q Consensus 115 y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~ 194 (320)
|..+++.-.....+==-++.|++.-|..|-=+.|++=..+-..++-|+|.+...-....|.+.|+.+-.+.+.+|.+.+.
T Consensus 86 y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~ 165 (327)
T KOG1581|consen 86 YSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKS 165 (327)
T ss_pred HhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcccc
Confidence 44444444444444337899999999999999999999999999999999999999999999999988887766644444
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCcc
Q 020855 195 SKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWK 262 (320)
Q Consensus 195 s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~ 262 (320)
-+.+-.+|+.+-.+-=+.=|+...-- +|+.|+.. .--..|-.++.+..++.+.+++.-.|.+.
T Consensus 166 g~~ns~~G~~Ll~~~L~fDgfTn~tQ----d~lf~~~k-~s~~~mM~~vNLf~~i~~~~~li~qg~~~ 228 (327)
T KOG1581|consen 166 GRENSPIGILLLFGYLLFDGFTNATQ----DSLFKKYK-VSSLHMMFGVNLFSAILNGTYLILQGHLL 228 (327)
T ss_pred CCCCchHhHHHHHHHHHHHhhHHhHH----HHHhccCC-ccHhHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence 44466888887666555556633333 44444221 11346888889999999999988888764
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.47 E-value=0.8 Score=45.46 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=54.6
Q ss_pred hhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCC
Q 020855 131 YGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENT 191 (320)
Q Consensus 131 ~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~ 191 (320)
.+|.+=|.+--+=+.+.+..++|+++.+++++|++..-..+-++..+|++++..|...+++
T Consensus 83 aAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 83 AAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 6777888888888889999999999999999999999999999999999999988765543
No 67
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=76.81 E-value=28 Score=33.75 Aligned_cols=103 Identities=24% Similarity=0.230 Sum_probs=68.2
Q ss_pred CchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhH
Q 020855 71 NSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLA 150 (320)
Q Consensus 71 ~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~ 150 (320)
-+.|=.-+-|.-|-=+-...+.+.. ++ +...|-..--+.-|++|+..|+.|-++...+-+++.--+.|+...
T Consensus 162 ~~~~~~~lPqaiGm~i~a~i~~~~~-~~-------~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vv 233 (269)
T PF06800_consen 162 VSGWSAFLPQAIGMLIGAFIFNLFS-KK-------PFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVV 233 (269)
T ss_pred CChhHhHHHHHHHHHHHHHHHhhcc-cc-------cccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHH
Confidence 4456666677777644333332221 11 111122334466799999999999999999999999888888888
Q ss_pred HHHHHHHHHhccCCchH----HHHHHHHHHHHHHH
Q 020855 151 FNAFFSFFLNSQKFTPF----IFNSLVLLTISATL 181 (320)
Q Consensus 151 FTAiFs~~i~~qkft~~----~insvVLLt~~a~L 181 (320)
-..+-+-++.|||=|+. .+.+++|..+|+++
T Consensus 234 IStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 234 ISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 88888888888776654 34455555555543
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=76.61 E-value=30 Score=29.87 Aligned_cols=104 Identities=21% Similarity=0.199 Sum_probs=68.1
Q ss_pred chhHHH-HHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHH-HHHhhhh
Q 020855 72 SKWMAT-FVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYS-LLCATQL 149 (320)
Q Consensus 72 s~Wl~t-~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~s-Li~sTQL 149 (320)
|+|.++ +....|+-+++..+++.+.++.+.-++.| +.....=.+|+.+ =+...+....+.+++.. ++...|+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p---~w~~lGG~lG~~~---V~~~~~~vp~lG~~~~~~l~~~GQl 102 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVP---WWAYLGGLLGVFF---VLSNIILVPRLGAALTTILIVAGQL 102 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC---hHHhccHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 455555 55788999888877776543111112223 3333333334333 34444566778776654 5668899
Q ss_pred HHHHHHHHH----HhccCCchHHHHHHHHHHHHHHH
Q 020855 150 AFNAFFSFF----LNSQKFTPFIFNSLVLLTISATL 181 (320)
Q Consensus 150 ~FTAiFs~~----i~~qkft~~~insvVLLt~~a~L 181 (320)
....+.=.| .-|+|+|+..+.++.++.+|..+
T Consensus 103 ~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 103 IASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999998877 77999999999999999998754
No 69
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=74.05 E-value=97 Score=30.72 Aligned_cols=193 Identities=16% Similarity=0.222 Sum_probs=97.7
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhh---HHHHhhhcccCCCCCCCCCCchh
Q 020855 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPI---LLPILCCFSNGSRSANTTDPKIS 109 (320)
Q Consensus 33 ~~~k~~~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPl---ll~pl~~~~~~~~~~~~~~p~~~ 109 (320)
|...+-+.-...+.++.++++|.+.++++++++. +.|+.-+.-..|--+ +.+|....|..+.+..+... +|
T Consensus 94 P~~~~~~~i~~tF~~ssIlLl~~Siss~iG~YiL-----apl~~~i~~~~gAaila~iviP~~~~y~ln~~~~s~~~-~R 167 (299)
T PF05884_consen 94 PEKLSTSSIVETFSWSSILLLGFSISSFIGGYIL-----APLFGIIFGPFGAAILAYIVIPLIAYYYLNKEDGSLAE-SR 167 (299)
T ss_pred CcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcchhHHHHHHHHHHHHHHhhcccccCchHH-HH
Confidence 4445555566777888888889899999998876 356665555555444 45555544422111111111 11
Q ss_pred -HHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCC
Q 020855 110 -TLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (320)
Q Consensus 110 -~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s 188 (320)
-++..++.=|++++. +++|+-.+.-=+..=|+++-+.+..+...+ .-+|..+.+. ++|+.++. |
T Consensus 168 ~~ll~~a~~QGvL~Ga-------~ls~~~l~sePf~~LT~iv~sfi~~~i~~~-~~~R~~lLg~---~vg~s~l~-H--- 232 (299)
T PF05884_consen 168 LALLFFALFQGVLVGA-------GLSHLYLSSEPFIALTPIVSSFIYPLIAGH-GTNRQKLLGI---VVGTSFLF-H--- 232 (299)
T ss_pred HHHHHHHHHHHHHHHH-------HhhcccccCCcHHHHHHHHHHHHHHHHccC-CcchHHHHHH---HHHHHHHH-H---
Confidence 244556666666663 444444434444555666655555555533 5566555433 33333321 1
Q ss_pred CCCCCCCCcchHHHHHHH------HHHHHHHHH-HHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhcc
Q 020855 189 ENTSGVSKGNYVIGFLCT------LGASATYSL-YLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFAS 258 (320)
Q Consensus 189 ~~~~~~s~~~y~iGf~~t------L~Asal~gL-~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~s 258 (320)
..+|.+.- +.=+++|.+ ..++.|++|+. .++.+ ..-..|+++...+.+=..+-|.|-+
T Consensus 233 ----------~~iG~i~G~Ls~~YllLt~lYTl~s~~~IQIa~r~-~~~~~-~~~y~~~lV~~~i~sK~~vy~ifG~ 297 (299)
T PF05884_consen 233 ----------LLIGIIFGSLSFSYLLLTALYTLASIAPIQIAFRN-QTDID-MHLYQMLLVFLTIFSKCFVYGIFGS 297 (299)
T ss_pred ----------HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHhcc-cCccc-hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23332221 222344443 34678998885 33332 2222355555444444444455443
No 70
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=72.26 E-value=9.6 Score=32.41 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhccCchhhHHHH-HhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Q 020855 114 LYVAFGLLLTGDNMMYSYGLLYLPVSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (320)
Q Consensus 114 ~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi-~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~L 181 (320)
-|+..=++......+|-+.+..-|.|.-.=+ |+...+||++.++++-++..++..+..+.|...|.++
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3555556677777888888899998876655 7999999999999998888888889999998887654
No 71
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=71.53 E-value=88 Score=29.18 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=13.9
Q ss_pred Eeh-hHHHHHHHHHHHHHhHhhccC
Q 020855 236 VLD-MQIYSSFVATCGCVVGLFASG 259 (320)
Q Consensus 236 vle-mQi~~slvAt~~~~vGl~~sg 259 (320)
.+| +.--...++.++.++|++.-.
T Consensus 146 ~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 146 TLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355 333345567777777766443
No 72
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=70.80 E-value=31 Score=33.70 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=91.9
Q ss_pred HHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHH
Q 020855 129 YSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLG 208 (320)
Q Consensus 129 Ya~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~ 208 (320)
-+.+++|+|.-|--+=-+-|=+=-.++..++.+++-.+..-..|.+..+|+++.--.+. +-.+.+++..-.|=++-+.
T Consensus 102 sN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~--Kv~g~e~~t~g~GElLL~l 179 (337)
T KOG1580|consen 102 SNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN--KVGGAEDKTFGFGELLLIL 179 (337)
T ss_pred ccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc--ccCCCcccccchHHHHHHH
Confidence 34688999999988777888888889999999999999999999999999888654332 2345566666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCc
Q 020855 209 ASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEW 261 (320)
Q Consensus 209 Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~ 261 (320)
.=++=|+- .-.-++ +|...-+---.|-.++.+-.|...-+|+...||-
T Consensus 180 SL~mDGlT----g~~Qdr-ira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGEl 227 (337)
T KOG1580|consen 180 SLAMDGLT----GSIQDR-IRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGEL 227 (337)
T ss_pred HHHhcccc----hhHHHH-HHHhhccCchhhHHHHHHHHHHHhhhhheehhhH
Confidence 77777773 333343 2222111122577777888899999999999774
No 73
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=67.02 E-value=39 Score=33.36 Aligned_cols=128 Identities=16% Similarity=0.247 Sum_probs=89.5
Q ss_pred hHHhHHHHhHhCCCCc-hhHHHH----------HHhhchhhHHHHhhhcc------cCCCC-CC----------------
Q 020855 57 AATLLGRLYYDKGGNS-KWMATF----------VQSAGFPILLPILCCFS------NGSRS-AN---------------- 102 (320)
Q Consensus 57 ~~~LL~r~Yf~~gG~s-~Wl~t~----------vQtaGfPlll~pl~~~~------~~~~~-~~---------------- 102 (320)
...+++|+++.+.=++ +|++=. ++..++|..-+-+++++ +|+-+ +.
T Consensus 111 ~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~a~~g~~lE~l~l~p~al 190 (293)
T COG2962 111 VNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLLLPVAL 190 (293)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCchHHhHHHHHHHHhHHHH
Confidence 3568899999877776 676543 45566777655555543 22111 00
Q ss_pred ------CCCC-----chhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHH
Q 020855 103 ------TTDP-----KISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNS 171 (320)
Q Consensus 103 ------~~~p-----~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~ins 171 (320)
..++ ...+.....+..|+..+.-=.+|+.|...+|.||..++.=-.=.--.+.+.++.+++|++-+..+
T Consensus 191 ~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~ 270 (293)
T COG2962 191 IYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT 270 (293)
T ss_pred HHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 1222 23567778888899999999999999999999999988755555556678888889999888777
Q ss_pred HHHHHHHHHHhhc
Q 020855 172 LVLLTISATLLAV 184 (320)
Q Consensus 172 vVLLt~~a~LL~l 184 (320)
-+++-.|-++.+.
T Consensus 271 F~~IW~aL~l~~~ 283 (293)
T COG2962 271 FAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666543
No 74
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=56.24 E-value=1.7e+02 Score=27.41 Aligned_cols=113 Identities=14% Similarity=0.084 Sum_probs=68.4
Q ss_pred chHHhHHHHhHhCCCCchhHHHH-HHhhchhhHHHHhhhcccCCCCCCC-CCCchhHHHHHHHHHHHHHHHhHHHHHhhh
Q 020855 56 SAATLLGRLYYDKGGNSKWMATF-VQSAGFPILLPILCCFSNGSRSANT-TDPKISTLVCLYVAFGLLLTGDNMMYSYGL 133 (320)
Q Consensus 56 ~~~~LL~r~Yf~~gG~s~Wl~t~-vQtaGfPlll~pl~~~~~~~~~~~~-~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl 133 (320)
.++..-.++.= +++.+.|++.. +-..|-|+.++..+.....+.++.. ..... ... ..+=++.+...++.++-+
T Consensus 128 ~agVy~E~~lK-~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~-~~~---~~~i~~~a~gGllva~v~ 202 (244)
T PF04142_consen 128 FAGVYFEKLLK-RSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYS-WWV---WIVIFLQAIGGLLVAFVL 202 (244)
T ss_pred HHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcc-hHH---HHHHHHHHHhhHHHHHHH
Confidence 34444444433 34477887764 2445556665554443222111111 01111 111 122235566777888888
Q ss_pred ccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHH
Q 020855 134 LYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLV 173 (320)
Q Consensus 134 ~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvV 173 (320)
.|+|.-+=..-.+..++.|+++++++.+.++|...+.+.+
T Consensus 203 KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 203 KYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 9999988899999999999999999999999987765543
No 75
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=55.44 E-value=1.2e+02 Score=30.71 Aligned_cols=149 Identities=15% Similarity=0.195 Sum_probs=85.1
Q ss_pred ccchhHHHHHHHHHHHHhccch----HHhHHHHhHhCCCCchhHHHH-----HHhhchhhHHHHhhhcccCCCC-----C
Q 020855 36 KHYKWWLRVILYVVCLLVGQSA----ATLLGRLYYDKGGNSKWMATF-----VQSAGFPILLPILCCFSNGSRS-----A 101 (320)
Q Consensus 36 k~~~~w~lv~~~~~~ll~G~~~----~~LL~r~Yf~~gG~s~Wl~t~-----vQtaGfPlll~pl~~~~~~~~~-----~ 101 (320)
++.++=+++++-+-.+-.+... +.-+-..= .+.|.+.+.+++ +-..||-..++ +|+.+..+.| .
T Consensus 169 fn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a-~a~G~~~l~~~l~~~vvv~~GGf~tN~~-yc~~~l~~~k~~s~~~ 246 (344)
T PF06379_consen 169 FNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAA-VAAGVNPLYANLPVYVVVLWGGFITNLI-YCLILLAKNKNWSWKG 246 (344)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHcCCCcHHHhCchhhhhhhhHHHHHHH-HHHHHHhhcCCCcccc
Confidence 4555567776655554443322 11122111 234666666554 34456655543 5554422211 1
Q ss_pred C--CCCCchhHHHHHHHHHHHHHHHhHHHHHhhhccCc----hhhHHHHHhhhhHHHHHHHHHHh-----ccCCchHHHH
Q 020855 102 N--TTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLP----VSTYSLLCATQLAFNAFFSFFLN-----SQKFTPFIFN 170 (320)
Q Consensus 102 ~--~~~p~~~~l~~~y~~lG~l~a~~N~lYa~gl~yLp----vsT~sLi~sTQL~FTAiFs~~i~-----~qkft~~~in 170 (320)
+ ..+|...+=...++.-|+++-.|-+.|.+|-..++ ++...+..++-++|.-+-.+++- ++|=-+..+.
T Consensus 247 d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~~ 326 (344)
T PF06379_consen 247 DYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLVL 326 (344)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHHH
Confidence 1 12343345566777789999999999999999988 45566666665555555555542 3444455667
Q ss_pred HHHHHHHHHHHhhccC
Q 020855 171 SLVLLTISATLLAVNA 186 (320)
Q Consensus 171 svVLLt~~a~LL~l~~ 186 (320)
.+.++.+++++++.+.
T Consensus 327 G~~vlI~s~~ivG~G~ 342 (344)
T PF06379_consen 327 GIAVLILSVVIVGYGM 342 (344)
T ss_pred HHHHHHHHHHHHhccc
Confidence 7777777777777653
No 76
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=54.52 E-value=42 Score=32.18 Aligned_cols=125 Identities=22% Similarity=0.309 Sum_probs=68.4
Q ss_pred HHHHhhhccC----chhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHH
Q 020855 127 MMYSYGLLYL----PVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIG 202 (320)
Q Consensus 127 ~lYa~gl~yL----pvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iG 202 (320)
++| ||+.-- =...-+.=+.-|..+..+|.+.=.|+| +-....++++..++...+-.....+ +..++...+|
T Consensus 55 Wl~-YG~~~~~d~llitIN~~G~~ie~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~lG 129 (243)
T KOG1623|consen 55 WLY-YGLLKVHDYLLITINGIGLVIETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFH---DPERRVSVLG 129 (243)
T ss_pred HHH-hhhhccCceEEEEEehhcHHHHHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcC---Ccceeeeeee
Confidence 555 664333 222223334456778888888888888 3333333333333333222111111 1134467899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-eeEEehhHHHHHHHHHHHHHhHhhccCCc
Q 020855 203 FLCTLGASATYSLYLSLLQLSFEKVIKKET-FSVVLDMQIYSSFVATCGCVVGLFASGEW 261 (320)
Q Consensus 203 f~~tL~Asal~gL~l~L~ql~feKv~k~~t-~~~vlemQi~~slvAt~~~~vGl~~sgd~ 261 (320)
++|+...-..||-=++-+ +|++|+.+ =.|-.-+++..-+++..=++=|+..+ |+
T Consensus 130 ~vc~~~nI~~~~sPL~~m----~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~-D~ 184 (243)
T KOG1623|consen 130 IVCAVFNISMFAAPLSVI----RKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIK-DF 184 (243)
T ss_pred hhhhhhhHHhhhccHHhh----hhheecCceeeechHHHHHHHHHHHHHHHHHHHhc-Ce
Confidence 999988877777644444 58887653 22333355555555555567788874 54
No 77
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=52.51 E-value=1.7e+02 Score=26.15 Aligned_cols=88 Identities=25% Similarity=0.404 Sum_probs=48.6
Q ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccce---------eEEeh-hHHHHHHHHHHHHHhHhhccCCccchhH
Q 020855 198 NYVIGFLCTLG-ASATYSLYLSLLQLSFEKVIKKETF---------SVVLD-MQIYSSFVATCGCVVGLFASGEWKGLSK 266 (320)
Q Consensus 198 ~y~iGf~~tL~-Asal~gL~l~L~ql~feKv~k~~t~---------~~vle-mQi~~slvAt~~~~vGl~~sgd~~~i~~ 266 (320)
-++.-....++ |++..+...+++.+..||.+|+... ...+| +.-....++.++.++|++.-.-|. +
T Consensus 72 l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~~~~~gf~~lti~l~~G~~wa---~ 148 (214)
T PF01578_consen 72 LYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYRLILIGFILLTIGLITGAIWA---K 148 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHccHHHHH---H
Confidence 34433344444 6777777778888877776644211 12233 333345667777788877665553 1
Q ss_pred hhcccCCcceeeeh---hHHHHHHHHHHHHh
Q 020855 267 EMNGYGEGRVSYLM---TLIWTAVTWQISSV 294 (320)
Q Consensus 267 E~~~F~~G~~~Y~~---~lv~~av~WQ~~~~ 294 (320)
|. -..|+. -.+|+.++|-++..
T Consensus 149 ~~------wG~~w~wDpk~~~sli~Wl~y~~ 173 (214)
T PF01578_consen 149 DS------WGSYWSWDPKEVWSLITWLVYGA 173 (214)
T ss_pred Hh------ccchhHHhHHHHHHHHHHHHHHH
Confidence 11 112333 56777778866554
No 78
>COG4711 Predicted membrane protein [Function unknown]
Probab=52.19 E-value=49 Score=31.27 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=82.5
Q ss_pred HHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHH--HHHhccCCchHHHHHHHHHHHHHHHhhccCCCCC--CC
Q 020855 117 AFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFS--FFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN--TS 192 (320)
Q Consensus 117 ~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs--~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~--~~ 192 (320)
.+|.+.+-+.+. =.|+.=-+-.++-+--++|+-.+. ..+..+|.||+-..++++.+++-+-..+-..+.+ ++
T Consensus 76 ~~g~~l~r~~lg----~~~~~Dl~q~vIGAi~lA~pfapTeEvwllA~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~~ 151 (217)
T COG4711 76 LLGELLERNQLG----DGTLADLVQEVIGAIVLAFPFAPTEEVWLLAYRISPYHSLALVLVVLVIMYSFVYTAKFGNDKK 151 (217)
T ss_pred HHHHHhcccccc----cccHHHHHHHHHHHHhhccccCchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 345555544432 134455566777777777777664 6778999999999999998887664444332221 11
Q ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHH
Q 020855 193 -GVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCG 250 (320)
Q Consensus 193 -~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~ 250 (320)
++..+---.=+.-++..++...+...++=..|++..+.+ ++..++--++.+++|++-
T Consensus 152 ~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~~~~~~-~t~~i~At~vl~~favIG 209 (217)
T COG4711 152 REEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTRFDFTT-VTQAIKATLVLGLFAVIG 209 (217)
T ss_pred cccccceeeeehHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHccHHHHH
Confidence 111111122345788899999999999999999865555 666666666665555443
No 79
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=48.81 E-value=10 Score=34.12 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhHhhccCCccchhHhhcccCCcceeeehhHHHHHHHHHHHHhhhhhhhh
Q 020855 240 QIYSSFVATCGCVVGLFASGEWKGLSKEMNGYGEGRVSYLMTLIWTAVTWQISSVGLLGLVF 301 (320)
Q Consensus 240 Qi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~~G~~~Y~~~lv~~av~WQ~~~~G~~Glif 301 (320)
.+....++.++|.+|-..= |+..+++.++|.++|......+......||++|+.+-|-=|
T Consensus 69 II~~E~~~a~l~~~G~~~l--~~~~~~~a~~F~~Ak~~a~~Gl~~~~l~w~~gF~~iGGeWF 128 (160)
T PF09933_consen 69 IIAWEALAALLCWIGAWRL--LRARRASAAAFNRAKRWAIAGLTLGFLLWFFGFMVIGGEWF 128 (160)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777775533 55566778899999999999999999999999998877544
No 80
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=47.81 E-value=2.7e+02 Score=28.05 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhh
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~ 183 (320)
++..+.-.+.-++++-.-.+.|++-..+. ++|+.+|.+ |.++..+++ |...+-..+.+|+.+-+
T Consensus 208 ~r~al~Gai~a~vl~~~~~~~f~~yv~~~--~~y~~iYGs---~a~v~i~Ll-------Wlyls~~I~L~Gael~~ 271 (412)
T PRK04214 208 LRHALPGALLTAVLLELVKWGFGFYLGNF--QTYQRIYGA---FAAVPILLL-------WIYLLWVLVLLGASLTS 271 (412)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHH---HHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45666677778888888888887766555 567777754 667777666 55555555556666544
No 81
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=46.80 E-value=63 Score=29.49 Aligned_cols=44 Identities=20% Similarity=0.199 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHH
Q 020855 116 VAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFL 159 (320)
Q Consensus 116 ~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i 159 (320)
+.+|+..+.-.++|.+|+.|+|+++.++..-.+=.++++++.++
T Consensus 212 ~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 212 VLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677888999999999999999999999999999999775
No 82
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=45.93 E-value=3.7e+02 Score=27.99 Aligned_cols=259 Identities=14% Similarity=0.225 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHhccchHHhHHHHhHh-CCCCchhHHHH---HHhhchhhHHHHhhhcccCCCCCC---CCCCch--hHH
Q 020855 41 WLRVILYVVCLLVGQSAATLLGRLYYD-KGGNSKWMATF---VQSAGFPILLPILCCFSNGSRSAN---TTDPKI--STL 111 (320)
Q Consensus 41 w~lv~~~~~~ll~G~~~~~LL~r~Yf~-~gG~s~Wl~t~---vQtaGfPlll~pl~~~~~~~~~~~---~~~p~~--~~l 111 (320)
-+.+.+-.+.|+.| +|-|.---|=- +-|++-|.+.+ +--.|.|++-+.-.- +.+..-++ +-.|.+ --.
T Consensus 10 ~l~iG~~LFamFFG--AGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava-~~~g~~~~l~~rv~~~f~~~f~ 86 (439)
T PRK15433 10 IIALGFMTFALFVG--AGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA-KVGGGVDSLSTPIGKVAGVLLA 86 (439)
T ss_pred HHHHHHHHHHHHhc--CcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHhhhcchHHHHHHH
Confidence 34555666667766 44443333332 34555554432 445677776543322 22110011 222322 233
Q ss_pred HHHHHHHHHHHHH---hHHHHHhhhc-cCchhhHHHHHhhhhHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHH
Q 020855 112 VCLYVAFGLLLTG---DNMMYSYGLL-YLPVSTYSLLCATQLAFNAFFSFFLNS--------QKFTPFIFNSLVLLTISA 179 (320)
Q Consensus 112 ~~~y~~lG~l~a~---~N~lYa~gl~-yLpvsT~sLi~sTQL~FTAiFs~~i~~--------qkft~~~insvVLLt~~a 179 (320)
..+|.++|.+.+. .+.-|..|.+ ++|-+..+++.-|=+.|...+-.-++. +=+||.-+..++++.+.+
T Consensus 87 ~~i~l~IGP~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~ 166 (439)
T PRK15433 87 TVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAA 166 (439)
T ss_pred HHHHHHHhhccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5688899988774 4566776665 355322233222222232233333333 346888888888888777
Q ss_pred HHhhccCCCCCCCCCC-CcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHH---
Q 020855 180 TLLAVNADSENTSGVS-KGNYVIGFL-----CTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCG--- 250 (320)
Q Consensus 180 ~LL~l~~~s~~~~~~s-~~~y~iGf~-----~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~--- 250 (320)
.+--.++. ..|.+.. ++...-||. ++..||..||.+..-. .-+|-.+++. -+...-+..+++|...
T Consensus 167 i~~p~g~~-~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~--i~~~G~~~~~--~~~k~t~~ag~ia~~~L~~ 241 (439)
T PRK15433 167 IVWPAGSI-STATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNA--ARSRGVTEAR--LLTRYTVWAGLMAGVGLTL 241 (439)
T ss_pred HhcCCCCC-CCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHHcCCCCHH--HHHHHHHHHHHHHHHHHHH
Confidence 66332221 1121211 233556664 7889999999754332 1122122111 0112222233433332
Q ss_pred -----HHhHhhccC------CccchhHhhcccCCcceeeehhHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 020855 251 -----CVVGLFASG------EWKGLSKEMNGYGEGRVSYLMTLIWTAVTWQISSVGLLGLVFEPGLLDGAE 310 (320)
Q Consensus 251 -----~~vGl~~sg------d~~~i~~E~~~F~~G~~~Y~~~lv~~av~WQ~~~~G~~Glif~~SsL~sgv 310 (320)
+-+|-..++ |..++..+.-....|+. ...+-..+.|-.|.==++|+++..+.=|...
T Consensus 242 vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~---G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 242 LYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGG---GSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred HHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223433333 33445544445555553 3445567788889999999999888776654
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=45.55 E-value=35 Score=35.06 Aligned_cols=70 Identities=4% Similarity=0.131 Sum_probs=58.7
Q ss_pred HHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCC
Q 020855 119 GLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (320)
Q Consensus 119 G~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s 188 (320)
.+...+.+|+.+.|..-.+.-+-++=-+.|+--..++=.++-++++|++.+.+-....+|=+.+...+..
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 4455678999999999888888888888888888888899999999999999999988888777665543
No 84
>COG1950 Predicted membrane protein [Function unknown]
Probab=44.24 E-value=85 Score=27.22 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
+++-+.+++.+|++-+.--=.- -..-+|..-. | --+|. +.+|++.+...+... +
T Consensus 30 ~~~aliaa~IlglvNalIRPIL--~ilslPltil-----T----lGLF~----------fVINai~l~laa~~~-~---- 83 (120)
T COG1950 30 FGAALIAAVILGLVNALIRPIL--LILSLPLTIL-----T----LGLFT----------FVINAIMLWLAAALV-G---- 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHH-----H----HHHHH----------HHHHHHHHHHHHHHh-C----
Confidence 5677888888888766544332 3344553211 1 11222 456888887776655 1
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 020855 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQ 221 (320)
Q Consensus 188 s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~q 221 (320)
..-.+-||+.++-+|...+++..+.+
T Consensus 84 --------~~fqi~gFgaAi~gaivLsiis~li~ 109 (120)
T COG1950 84 --------GGFQIDGFGAAILGAIVLSIISWLIN 109 (120)
T ss_pred --------CchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 13468899999999999999999987
No 85
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=41.37 E-value=2.7e+02 Score=25.13 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=24.4
Q ss_pred HHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhhH
Q 020855 44 VILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPIL 87 (320)
Q Consensus 44 v~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPll 87 (320)
..+.....-+|...+++++.+-.++.| |=..+.=.+..-++
T Consensus 123 ~~~~~~~~~~g~~~g~~l~~~l~~~~~---~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 123 FGILSAGFSLGSILGPLLGGFLISYFG---WRWAFLISAILSLI 163 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHCH---HCCHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccchhhhhhhccc---cccccccccchhhh
Confidence 345556667777888888887776555 43334434444333
No 86
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=41.25 E-value=1.2e+02 Score=28.41 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=57.3
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccceeEEehhHHHHHHHHHHHHHhHhhc------cC
Q 020855 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKV--IKKETFSVVLDMQIYSSFVATCGCVVGLFA------SG 259 (320)
Q Consensus 188 s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv--~k~~t~~~vlemQi~~slvAt~~~~vGl~~------sg 259 (320)
++++.++.+..+..|.=-+...-..++..++++-+.+-.- .++.. . =...+..++|++++.+|..+ .-
T Consensus 88 ~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~-a---i~~~v~~~ia~l~S~~g~~iF~~~a~~~ 163 (211)
T PF07062_consen 88 GNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSF-A---IFYTVLVFIAALLSLIGLGIFFFNAHMV 163 (211)
T ss_pred cCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666665444333333333333343333221 22221 1 12333345556666555432 12
Q ss_pred CccchhHhhccc--CCcceeeehhHHHHHHHHHHHHhhhhhhhh
Q 020855 260 EWKGLSKEMNGY--GEGRVSYLMTLIWTAVTWQISSVGLLGLVF 301 (320)
Q Consensus 260 d~~~i~~E~~~F--~~G~~~Y~~~lv~~av~WQ~~~~G~~Glif 301 (320)
|-+-+++|.+.| +.|. +||+-+.++.+-|-.+.+++++..|
T Consensus 164 d~r~~~g~~~tYeq~~G~-afYl~~~g~l~~~~a~l~sv~~~~~ 206 (211)
T PF07062_consen 164 DNRFVQGIVGTYEQHYGY-AFYLHLAGSLLLLFAFLFSVFVTYF 206 (211)
T ss_pred hhheeecccceEEEeeeH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666 4455 6788888888888888887776543
No 87
>PRK01844 hypothetical protein; Provisional
Probab=40.75 E-value=29 Score=27.54 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhccchHHhHHHHhHhC
Q 020855 41 WLRVILYVVCLLVGQSAATLLGRLYYDK 68 (320)
Q Consensus 41 w~lv~~~~~~ll~G~~~~~LL~r~Yf~~ 68 (320)
|+.+.+-++.+++|-.++..+.|-|+.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677789999999999999999876
No 88
>PRK00523 hypothetical protein; Provisional
Probab=34.78 E-value=41 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhccchHHhHHHHhHhC
Q 020855 41 WLRVILYVVCLLVGQSAATLLGRLYYDK 68 (320)
Q Consensus 41 w~lv~~~~~~ll~G~~~~~LL~r~Yf~~ 68 (320)
|+.+.+-++++++|-.++..+.|.|+.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778999999999999999976
No 89
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.75 E-value=1.9e+02 Score=27.26 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHh---hchhhHHHHhhhcccCCCCCCCCCCchhHHHH
Q 020855 43 RVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQS---AGFPILLPILCCFSNGSRSANTTDPKISTLVC 113 (320)
Q Consensus 43 lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQt---aGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~ 113 (320)
++++..+.++-|-+ -||.++-.-.=+.|++-+ +||-.++.-+|+.+.+. .++.+|.+.|-++
T Consensus 102 Ll~lg~~aLlsgit-------aff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~a--d~sqr~~~~K~~l 166 (226)
T COG4858 102 LLFLGAMALLSGIT-------AFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRA--DNSQRPGTWKYLL 166 (226)
T ss_pred HHHHHHHHHHHHHH-------HHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhc--ccccCCchHHHHH
Confidence 55566666665532 367666555556666654 58888766555543322 2344554434333
No 90
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=34.74 E-value=5.7e+02 Score=26.98 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=44.7
Q ss_pred cccchhHHHHHHHHHHHHhccchHHhHHHHhH---hCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHH
Q 020855 35 LKHYKWWLRVILYVVCLLVGQSAATLLGRLYY---DKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTL 111 (320)
Q Consensus 35 ~k~~~~w~lv~~~~~~ll~G~~~~~LL~r~Yf---~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l 111 (320)
+.+||--.+..+|.++.-+..+....-+-=|= |+|+.-..+-=-+....---+++-+.+..+++++...+.|..
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli--- 106 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI--- 106 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH---
Confidence 33444444555666666665544333333333 345555443222222111113333444444433322344531
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhccCch-hhH
Q 020855 112 VCLYVAFGLLLTGDNMMYSYGLLYLPV-STY 141 (320)
Q Consensus 112 ~~~y~~lG~l~a~~N~lYa~gl~yLpv-sT~ 141 (320)
. =.++.+..|.+| .++.|.|. .-|
T Consensus 107 -~----s~ii~~~g~llY-~~l~~~~~~~~y 131 (488)
T KOG2325|consen 107 -V----SFLIAIIGNLLY-LALAYVPNGVKY 131 (488)
T ss_pred -H----HHHHHHHHHHHH-HHHHhcccchHH
Confidence 1 123445678999 67777777 444
No 91
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.12 E-value=89 Score=30.42 Aligned_cols=137 Identities=19% Similarity=0.258 Sum_probs=88.5
Q ss_pred HHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCC--CCCCCCcchHHHHH
Q 020855 127 MMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN--TSGVSKGNYVIGFL 204 (320)
Q Consensus 127 ~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~--~~~~s~~~y~iGf~ 204 (320)
|--+=+++|||+..|++.--..++--|.--.+..+.|.|...+.|-.|+.++++.-.-+|.... .++.-+..|.+=+.
T Consensus 83 yt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~ 162 (309)
T COG5070 83 YTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFT 162 (309)
T ss_pred HhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEeh
Confidence 3345678899999999998888888888888999999999999999999999988444332111 11222223433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHhhcccCC
Q 020855 205 CTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKEMNGYGE 273 (320)
Q Consensus 205 ~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~~ 273 (320)
=.+ .+++ .-+..||.+|-+.|. -.|--.|-.+.+.++.+.=-+.-.||..- .-+++|+.
T Consensus 163 Ncl-ssaa-------fVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~ 221 (309)
T COG5070 163 NCL-SSAA-------FVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSV 221 (309)
T ss_pred hhH-hHHH-------HHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCCh
Confidence 222 2222 233458877644332 23556777788888877766666798652 22445543
No 92
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=33.50 E-value=3.6e+02 Score=26.64 Aligned_cols=154 Identities=23% Similarity=0.293 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhhcccCCCCCCCCCCchhHHHHHHHHHHH
Q 020855 41 WLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCCFSNGSRSANTTDPKISTLVCLYVAFGL 120 (320)
Q Consensus 41 w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~~~~~~~~~~~~~p~~~~l~~~y~~lG~ 120 (320)
-+.+.++++.+=.|.+.+..| |.+-| .|--|++..+-=-+++.++ +.|+++ |-+ .+ .++.+ +..|+
T Consensus 14 ~~~ll~amvsiq~Gas~Ak~L----FP~vG--~~g~t~lRl~~aaLIll~l-~RPwr~-r~~--~~-~~~~~---~~yGv 79 (292)
T COG5006 14 ILALLVAMVSIQSGASFAKSL----FPLVG--AAGVTALRLAIAALILLAL-FRPWRR-RLS--KP-QRLAL---LAYGV 79 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHH----ccccC--hhhHHHHHHHHHHHHHHHH-hhHHHh-ccC--hh-hhHHH---HHHHH
Confidence 355666666666666555444 44444 3445555554333333322 222222 111 11 12222 33477
Q ss_pred HHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchH
Q 020855 121 LLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYV 200 (320)
Q Consensus 121 l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~ 200 (320)
-.+.-|++|=.++..+|.++-- +-+..=..+++. +.++|..-+.|.++.++-+. ++.-...+. ..---
T Consensus 80 sLg~MNl~FY~si~riPlGiAV---AiEF~GPL~vA~-~~sRr~~d~vwvaLAvlGi~--lL~p~~~~~------~~lDp 147 (292)
T COG5006 80 SLGGMNLLFYLSIERIPLGIAV---AIEFTGPLAVAL-LSSRRLRDFVWVALAVLGIW--LLLPLGQSV------WSLDP 147 (292)
T ss_pred HHHHHHHHHHHHHHhccchhhh---hhhhccHHHHHH-HhccchhhHHHHHHHHHHHH--hheeccCCc------CcCCH
Confidence 7777888888999999998753 333333344444 44677777888887776554 332111111 11236
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020855 201 IGFLCTLGASATYSLYLSLL 220 (320)
Q Consensus 201 iGf~~tL~Asal~gL~l~L~ 220 (320)
.|..++++|.++..+|.-.-
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 148 VGVALALGAGACWALYIVLG 167 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHc
Confidence 89999999999999988877
No 93
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=33.36 E-value=3.8e+02 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHH
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFL 159 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i 159 (320)
.+..+.-++.-++++..-++.+.+=..+.. +++.++. .+..++..++
T Consensus 191 ~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~--~~~~~YG---~l~~li~~Ll 237 (260)
T PF03631_consen 191 WRAALPGALFAAVLWFLLSYGFSLYLSYVS--SYSSVYG---SLGSLIILLL 237 (260)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhh---hHHHHHHHHH
Confidence 445566666667777777777765444433 4555554 2334444444
No 94
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=32.72 E-value=1.7e+02 Score=26.97 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHhhcccCCcceeeehhH
Q 020855 203 FLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKEMNGYGEGRVSYLMTL 282 (320)
Q Consensus 203 f~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~~G~~~Y~~~l 282 (320)
...++.+|..-+... ...+ ..+|++ =.|.+.++++.++|..--..+|| .|+.|..-+
T Consensus 27 L~~aliaA~~~a~~~----~v~R-L~r~~~-----~~~a~~gl~gV~i~a~~A~~tG~-------------A~~~Fl~gi 83 (187)
T PF11361_consen 27 LTPALIAALAVAVVI----VVWR-LVRRES-----VQPALSGLFGVAISAAIAWRTGS-------------AKDFFLPGI 83 (187)
T ss_pred hHHHHHHHHHHHHHH----HHHH-HHhcCc-----cHHHHHHHHHHHHHHHHHHHHCC-------------hhhhhHHHH
Confidence 335566666655544 3335 456665 23778899999999766666655 334566666
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhh
Q 020855 283 IWTAVTWQISSVGLLGLVFEPGLLD 307 (320)
Q Consensus 283 v~~av~WQ~~~~G~~Glif~~SsL~ 307 (320)
..+++ .+++|.+|-+.
T Consensus 84 ~~n~~---------~~~~~l~S~lv 99 (187)
T PF11361_consen 84 WTNAV---------YAVVFLVSVLV 99 (187)
T ss_pred HHHHH---------HHHHHHHHHHH
Confidence 55554 56777777653
No 95
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=31.86 E-value=2.1e+02 Score=28.34 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----ceeEEe-hhHHHHHHHHHHHHHhHhhccCCccchhHhhcccCCcceeeeh
Q 020855 207 LGASATYSLYLSLLQLSFEKVIKKE-----TFSVVL-DMQIYSSFVATCGCVVGLFASGEWKGLSKEMNGYGEGRVSYLM 280 (320)
Q Consensus 207 L~Asal~gL~l~L~ql~feKv~k~~-----t~~~vl-emQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F~~G~~~Y~~ 280 (320)
++-|++||+.+.+.=...+|+-|+. .+..+= +.|=|-.++..+..++++|.+=| .+|+-.-+ +
T Consensus 51 I~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~ID-------VDR~yl~~----~ 119 (296)
T PF10361_consen 51 IAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSID-------VDRYYLQG----L 119 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeee-------ecHHhccc----c
Confidence 3445666666666666778876431 244444 59999988888888999998844 34332222 3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhh
Q 020855 281 TLIWTAVTWQISSVGLLGLVFEP 303 (320)
Q Consensus 281 ~lv~~av~WQ~~~~G~~Glif~~ 303 (320)
-++-+.+.|+++..|++.+|-++
T Consensus 120 piil~sfF~~l~~~~~lA~vWE~ 142 (296)
T PF10361_consen 120 PIILQSFFWYLMQPGTLAAVWEA 142 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999988764
No 96
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=31.57 E-value=1.7e+02 Score=26.23 Aligned_cols=63 Identities=19% Similarity=0.375 Sum_probs=38.3
Q ss_pred HHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCC-cc--chh----HhhcccCCcce----eeehhHHHHH
Q 020855 220 LQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGE-WK--GLS----KEMNGYGEGRV----SYLMTLIWTA 286 (320)
Q Consensus 220 ~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd-~~--~i~----~E~~~F~~G~~----~Y~~~lv~~a 286 (320)
.-...+.+.+|+.|.+.--||. +|.+..++|+.+-.+ |+ +++ +|++.|+.|+- .|++..++.+
T Consensus 93 ~~~c~~~~~~~sv~~i~g~~Q~----~A~l~~~~g~~~yP~Gw~s~~v~~~CG~~s~~y~~g~C~~gwa~~la~~~~~ 166 (181)
T PF10242_consen 93 FSCCFRSICSRSVFKICGWLQF----VAGLCLLLGCLLYPAGWDSPEVRQLCGPDSDPYKLGDCSLGWAYYLAIIGVA 166 (181)
T ss_pred HHHHHhccCCceEeeechHHHH----HHHHHHHHhheeecCccCCcHHHhhhcCCCCceeCCCCCCChHHHHHHHHHH
Confidence 3334466666766666666666 446667777776543 22 233 35678888863 5777776664
No 97
>KOG4026 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.31 E-value=3.3e+02 Score=25.70 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCcc------chhHh-hcc
Q 020855 198 NYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWK------GLSKE-MNG 270 (320)
Q Consensus 198 ~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~------~i~~E-~~~ 270 (320)
-...+|+..++-...+.++.+++=+.+ .++++ +.+|--++..+|+++..+|+++-.|+= ++=+| ++.
T Consensus 77 ~~~a~f~vlla~~Lill~i~~~~l~~~---c~~~s---i~~~cg~~q~~a~l~milGc~lyP~GW~s~~vr~~CG~~a~k 150 (207)
T KOG4026|consen 77 FKLAAFFVLLAFVLILLLIVFLALLGC---CRSKS---IFNMCGWMQGIAGLCMILGCALYPDGWDSPEVRRMCGAKAGK 150 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---hchhh---hhhhhHHHHHHHHHHHHHHHHhcCCccCCHHHHHHhccccCC
Confidence 345566655555555555555442222 33333 556777777788999999999877642 22222 236
Q ss_pred cCCcc----eeeehhHHHHHHHHHHHHhh
Q 020855 271 YGEGR----VSYLMTLIWTAVTWQISSVG 295 (320)
Q Consensus 271 F~~G~----~~Y~~~lv~~av~WQ~~~~G 295 (320)
|+.|+ ..|++..++..-+--+++++
T Consensus 151 y~lG~CsIgWaY~lAIig~~daliL~~ls 179 (207)
T KOG4026|consen 151 YYLGDCSIGWAYYLAIIGILDALILAFLS 179 (207)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 77775 35777777766655555443
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=29.28 E-value=1.9e+02 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020855 198 NYVIGFLCTLGASATYSLYLSLLQLSFEK 226 (320)
Q Consensus 198 ~y~iGf~~tL~Asal~gL~l~L~ql~feK 226 (320)
++++|..+++.+.++||.-..=+++.-++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 68999999999999999988888777665
No 99
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=28.54 E-value=7.7e+02 Score=26.55 Aligned_cols=104 Identities=24% Similarity=0.292 Sum_probs=51.5
Q ss_pred HHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHH-------H-hccCCchHHHHHHHHHHHHHHHhhccCCCC
Q 020855 118 FGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFF-------L-NSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (320)
Q Consensus 118 lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~-------i-~~qkft~~~insvVLLt~~a~LL~l~~~s~ 189 (320)
-|++.+..+.+-..+..--...||.+++. +..++|.++ . .+.|-++..-..+....+...+....+. +
T Consensus 117 ~Gll~gl~~ll~~~g~~~~~s~~~~~l~~---i~~a~f~fLPiliays~Ak~~~~np~~g~~ig~~l~~p~l~~~~~~-~ 192 (610)
T TIGR01995 117 AGLLKAVLTLLTMTGLISADSQTYQILNA---MGDAVFYFLPILLAITAAKRFKVNPYLAAAIGAALLHPTLVAMVGS-G 192 (610)
T ss_pred HHHHHHHHHHHHhccccCcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhHHHHhhhcc-C
Confidence 35555555555444532222356666653 223333322 1 1445566554444443333333332221 1
Q ss_pred CC-C--C--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020855 190 NT-S--G--VSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIK 229 (320)
Q Consensus 190 ~~-~--~--~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k 229 (320)
.+ + + .....|.-|++.++.++.+.+- .|..++|.++
T Consensus 193 ~~~~~lGi~v~~~~y~~gvip~Il~~~l~~~----iek~~~k~vP 233 (610)
T TIGR01995 193 KPVTFFGIPVTLMSYSSSVIPVILAVWLMSY----VEKFLKKVIP 233 (610)
T ss_pred CceeecCcceeccCCcccHHHHHHHHHHHHH----HHHHHHhhCh
Confidence 11 1 1 2233577888888888887777 7777777544
No 100
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=26.75 E-value=5.6e+02 Score=24.34 Aligned_cols=19 Identities=11% Similarity=-0.032 Sum_probs=12.1
Q ss_pred hccchHHhHHHHhHhCCCC
Q 020855 53 VGQSAATLLGRLYYDKGGN 71 (320)
Q Consensus 53 ~G~~~~~LL~r~Yf~~gG~ 71 (320)
+|...+++++-+-+++-|-
T Consensus 139 lg~~igp~lgg~l~~~~g~ 157 (382)
T PRK11128 139 IAFVIGSALTGKLVSWFGE 157 (382)
T ss_pred HHHHHHHHHHHHHHHHcCh
Confidence 4666777777766666443
No 101
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=26.12 E-value=4.7e+02 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHHHHHHhccchHHhHHHHhHhCCC
Q 020855 44 VILYVVCLLVGQSAATLLGRLYYDKGG 70 (320)
Q Consensus 44 v~~~~~~ll~G~~~~~LL~r~Yf~~gG 70 (320)
..+....--+|+..++.+.....++.|
T Consensus 125 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (352)
T cd06174 125 LGLFSAGFGLGALLGPLLGGLLAESLG 151 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555566777788888887777765
No 102
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.92 E-value=80 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=19.0
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHhHHHH
Q 020855 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRL 64 (320)
Q Consensus 33 ~~~k~~~~w~lv~~~~~~ll~G~~~~~LL~r~ 64 (320)
-++|+.|.|.++++-+..+..=.-.|-+|+|+
T Consensus 23 VER~PFrP~~Ll~~li~Vv~gl~llS~ll~~l 54 (55)
T PF11293_consen 23 VERKPFRPWRLLIVLIVVVIGLGLLSRLLSRL 54 (55)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888887765544443333455666654
No 103
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=25.35 E-value=42 Score=32.79 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhhhccCchhhHHHHHhhhhHHHHHHHHHHhccCCchH----HHHHHHHHHHHHHHhh
Q 020855 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPVSTYSLLCATQLAFNAFFSFFLNSQKFTPF----IFNSLVLLTISATLLA 183 (320)
Q Consensus 108 ~~~l~~~y~~lG~l~a~~N~lYa~gl~yLpvsT~sLi~sTQL~FTAiFs~~i~~qkft~~----~insvVLLt~~a~LL~ 183 (320)
..|-...-...|++|+..|+-+-++-+..-++|.=-++|+--.-.-+=.-+++|||=|+- .+..++|..+|+++++
T Consensus 205 ~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 205 FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 446667778899999999999988888888887655666555545555556667766653 4456666677776665
Q ss_pred c
Q 020855 184 V 184 (320)
Q Consensus 184 l 184 (320)
+
T Consensus 285 ~ 285 (288)
T COG4975 285 I 285 (288)
T ss_pred e
Confidence 4
No 104
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=24.68 E-value=9.7e+02 Score=26.44 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=10.5
Q ss_pred HHHHHHhccchHHhHHHHhHhC
Q 020855 47 YVVCLLVGQSAATLLGRLYYDK 68 (320)
Q Consensus 47 ~~~~ll~G~~~~~LL~r~Yf~~ 68 (320)
......+|...+++++-+....
T Consensus 144 ~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 144 LEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555544443
No 105
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=24.44 E-value=2.6e+02 Score=26.93 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=57.9
Q ss_pred HhhhhHHHHHHHHHHh-ccCCc------hHH-HHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q 020855 145 CATQLAFNAFFSFFLN-SQKFT------PFI-FNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLY 216 (320)
Q Consensus 145 ~sTQL~FTAiFs~~i~-~qkft------~~~-insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~ 216 (320)
.+-||+-|+.++++.. .+.+. ++. +.+++...+...-++-...- ...+..+++...+.|++.|.+.|+.
T Consensus 55 l~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c~~~~---r~k~P~N~ilL~iFT~a~s~~~g~~ 131 (237)
T KOG2322|consen 55 LSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLACCEGL---RRKSPVNLILLGIFTLAEAFMTGLV 131 (237)
T ss_pred HHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHccCcc---cccCcHHHhHHHHHHHHHHHHHHHH
Confidence 3456666666655433 33332 222 66677777776666654433 2345557999999999999999995
Q ss_pred HHHHHHHHHHhhcccceeEEehhHHHHHHHHHHHHHhHhhcc
Q 020855 217 LSLLQLSFEKVIKKETFSVVLDMQIYSSFVATCGCVVGLFAS 258 (320)
Q Consensus 217 l~L~ql~feKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~s 258 (320)
-+-. ++ ..|+| ++.-|..+++++.+-
T Consensus 132 ~a~~----~~-------~~VL~-----Al~IT~~V~~slt~~ 157 (237)
T KOG2322|consen 132 TAFY----DA-------KVVLL-----ALIITTVVVLSLTLF 157 (237)
T ss_pred HHHH----hh-------HHHHH-----HHHHHHhheeeEEEE
Confidence 5444 32 11333 333477777887776
No 106
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.55 E-value=3.3e+02 Score=30.29 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=71.3
Q ss_pred HhccchHHhHHHHhHhCCCCc--------hhHHHH----HHhhchhh-HHHHhhhcccCCCCC-------------CCC-
Q 020855 52 LVGQSAATLLGRLYYDKGGNS--------KWMATF----VQSAGFPI-LLPILCCFSNGSRSA-------------NTT- 104 (320)
Q Consensus 52 l~G~~~~~LL~r~Yf~~gG~s--------~Wl~t~----vQtaGfPl-ll~pl~~~~~~~~~~-------------~~~- 104 (320)
++|...++++.|+|.|-|-.. +|+-+| +-.++..+ ..+|++++|+..+++ ++.
T Consensus 287 aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~ 366 (735)
T KOG3626|consen 287 AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESG 366 (735)
T ss_pred HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccc
Confidence 457778889999999996221 666665 33333333 345666665432210 000
Q ss_pred ----CC-----------chhHHHH--HHHHHHHHHHHhHHHHHhhhc-----------cCchhhHHHHHhhhhHHHHHH-
Q 020855 105 ----DP-----------KISTLVC--LYVAFGLLLTGDNMMYSYGLL-----------YLPVSTYSLLCATQLAFNAFF- 155 (320)
Q Consensus 105 ----~p-----------~~~~l~~--~y~~lG~l~a~~N~lYa~gl~-----------yLpvsT~sLi~sTQL~FTAiF- 155 (320)
.+ ..+|++- +|+..-+....+-+.+ .|+. -+|.|..+++..+=-++.+..
T Consensus 367 ~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~-~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~G 445 (735)
T KOG3626|consen 367 GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAI-TGYITFLPKYLETQFGISASLANILTGSIGVPAAAVG 445 (735)
T ss_pred cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-hhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhh
Confidence 01 1233332 4444444444454554 2322 356777777765544444433
Q ss_pred ----HHHHhccCCchHHHHHHHHHHHHHHHh
Q 020855 156 ----SFFLNSQKFTPFIFNSLVLLTISATLL 182 (320)
Q Consensus 156 ----s~~i~~qkft~~~insvVLLt~~a~LL 182 (320)
.+++.|.|+++-.....++.+.-..++
T Consensus 446 i~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 446 IFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred hhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 567889999998887777665544433
No 107
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=21.93 E-value=4e+02 Score=21.02 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCc--------h---hHHHHHHhhchhhHHHHhhh
Q 020855 39 KWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNS--------K---WMATFVQSAGFPILLPILCC 93 (320)
Q Consensus 39 ~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s--------~---Wl~t~vQtaGfPlll~pl~~ 93 (320)
..|.-..++++-..+|....-.++|.+-.+...+ + +...++|--|++.++...+.
T Consensus 15 g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 15 GPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566777788888888889999999887422211 2 25566666677665544443
Done!