Query 020855
Match_columns 320
No_of_seqs 144 out of 207
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.3 0.0011 3.8E-08 53.6 9.4 67 120-186 38-105 (110)
2 2i68_A Protein EMRE; transmemb 97.2 0.00058 2E-08 57.9 6.4 68 120-187 38-106 (137)
3 2lly_A Neuronal acetylcholine 13.5 4.9E+02 0.017 21.1 6.8 100 152-258 24-131 (137)
4 4gc0_A D-xylose-proton symport 12.9 3.9E+02 0.013 24.2 6.6 17 77-93 319-335 (491)
5 2gfp_A EMRD, multidrug resista 10.3 8E+02 0.027 21.1 9.9 38 46-86 128-165 (375)
6 1ihs_I Hirutonin; hydrolase(se 10.0 78 0.0027 19.4 0.5 11 258-268 9-19 (26)
7 3d31_C Sulfate/molybdate ABC t 9.1 1.9E+02 0.0064 25.6 2.9 13 54-66 50-62 (295)
8 5gds_I Hirunorm V; serine prot 8.2 1E+02 0.0035 18.9 0.5 10 258-267 14-23 (26)
9 1pw4_A Glycerol-3-phosphate tr 7.2 1.1E+03 0.039 20.5 20.8 28 43-70 156-183 (451)
10 3j01_B Preprotein translocase 6.7 3.9E+02 0.013 21.5 3.5 87 143-229 8-109 (116)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.34 E-value=0.0011 Score=53.56 Aligned_cols=67 Identities=9% Similarity=0.187 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHhhhccCchhhHHHH-HhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC
Q 020855 120 LLLTGDNMMYSYGLLYLPVSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 120 ~l~a~~N~lYa~gl~yLpvsT~sLi-~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~ 186 (320)
+.++..-++++++++++|.|+..-+ ..+..+++++.++++.+||+|+.++.++++...|..++...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667899999999999998777 899999999999999999999999999999999999987654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.19 E-value=0.00058 Score=57.90 Aligned_cols=68 Identities=9% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHhHHHHHhhhccCchhhHHHH-HhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCC
Q 020855 120 LLLTGDNMMYSYGLLYLPVSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (320)
Q Consensus 120 ~l~a~~N~lYa~gl~yLpvsT~sLi-~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~ 187 (320)
+.++..-+++++++.++|+++..-+ ....-++++++++++.++++|+.++.++.+..+|..++...+.
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~~ 106 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666899999999999977666 8999999999999999999999999999999999999987543
No 3
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=13.50 E-value=4.9e+02 Score=21.13 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=53.6
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc
Q 020855 152 NAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS-GVSKGNYVIGFLCTLGASATYSLYLSLLQLSFE-KVIK 229 (320)
Q Consensus 152 TAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~-~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~fe-Kv~k 229 (320)
-...++.+..+.--+...+--++|+....++.+++.-.+.+ ..+-=.....+.+.+...+ +.|-+.- +..+
T Consensus 24 Ls~~~F~lp~~s~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v~~s-------l~~tv~V~~~~~ 96 (137)
T 2lly_A 24 LTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLS-------IVITVFVLNVHH 96 (137)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHHHHH-------HHHHHHHHHCCS
T ss_pred HHHHheeeCCCCCCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHHHHH-------hhhhhhhhhHHh
Confidence 35667888877767777778888888877777665432222 2222222333333322211 1222211 1222
Q ss_pred cc--ce---eEEeh-hHHHHHHHHHHHHHhHhhcc
Q 020855 230 KE--TF---SVVLD-MQIYSSFVATCGCVVGLFAS 258 (320)
Q Consensus 230 ~~--t~---~~vle-mQi~~slvAt~~~~vGl~~s 258 (320)
|+ +. ..|++ +-++.-.+...++++|.+.+
T Consensus 97 r~~~~~~mp~~~~dr~~lwif~~~~~~gt~~i~~~ 131 (137)
T 2lly_A 97 RSPETHTGGGGGIDRIFLWMFIIVCLLGTVGLFLP 131 (137)
T ss_dssp SCSSCCSSCSSSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCccCccchHHHHHHHHHHHHHHHHHhhhhheec
Confidence 21 22 24666 77766666677888888877
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=12.85 E-value=3.9e+02 Score=24.19 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=7.0
Q ss_pred HHHHhhchhhHHHHhhh
Q 020855 77 TFVQSAGFPILLPILCC 93 (320)
Q Consensus 77 t~vQtaGfPlll~pl~~ 93 (320)
......+++..++..++
T Consensus 319 ~~~~~~~~~~~~~~~~l 335 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMT 335 (491)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=10.29 E-value=8e+02 Score=21.14 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhh
Q 020855 46 LYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPI 86 (320)
Q Consensus 46 ~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPl 86 (320)
+.....-+|...+++++.+-.++.| |-..+.-.+...+
T Consensus 128 ~~~~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~ 165 (375)
T 2gfp_A 128 LLNMGILVSPLLAPLIGGLLDTMWN---WRACYLFLLVLCA 165 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhcc---HHHHHHHHHHHHH
Confidence 3444445566777777766554322 5444443444333
No 6
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=9.98 E-value=78 Score=19.41 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=9.1
Q ss_pred cCCccchhHhh
Q 020855 258 SGEWKGLSKEM 268 (320)
Q Consensus 258 sgd~~~i~~E~ 268 (320)
+|||+.|++|-
T Consensus 9 ~gDFe~IPEeY 19 (26)
T 1ihs_I 9 DGDFEEIPEEY 19 (26)
T ss_pred CCCCCcCCHHH
Confidence 58999999774
No 7
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=9.13 E-value=1.9e+02 Score=25.64 Aligned_cols=13 Identities=15% Similarity=-0.100 Sum_probs=7.4
Q ss_pred ccchHHhHHHHhH
Q 020855 54 GQSAATLLGRLYY 66 (320)
Q Consensus 54 G~~~~~LL~r~Yf 66 (320)
.....|++.-++.
T Consensus 50 ~~~~~P~~~~~~~ 62 (295)
T 3d31_C 50 LFIFLTLSNMIFE 62 (295)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345666666665
No 8
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=8.19 E-value=1e+02 Score=18.92 Aligned_cols=10 Identities=10% Similarity=0.567 Sum_probs=7.6
Q ss_pred cCCccchhHh
Q 020855 258 SGEWKGLSKE 267 (320)
Q Consensus 258 sgd~~~i~~E 267 (320)
.|||+.|+.|
T Consensus 14 ~gDfe~IPee 23 (26)
T 5gds_I 14 GGDYEEIPAA 23 (26)
T ss_pred CCCcccCcHh
Confidence 4788888865
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.20 E-value=1.1e+03 Score=20.53 Aligned_cols=28 Identities=21% Similarity=-0.006 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccchHHhHHHHhHhCCC
Q 020855 43 RVILYVVCLLVGQSAATLLGRLYYDKGG 70 (320)
Q Consensus 43 lv~~~~~~ll~G~~~~~LL~r~Yf~~gG 70 (320)
...+.....-+|...+++++....++.|
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667788888888876555555
No 10
>3j01_B Preprotein translocase SECE subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Z 2aki_Z
Probab=6.73 E-value=3.9e+02 Score=21.50 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCC---------------CCcchHHHHHHHH
Q 020855 143 LLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGV---------------SKGNYVIGFLCTL 207 (320)
Q Consensus 143 Li~sTQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~---------------s~~~y~iGf~~tL 207 (320)
++.+.=+.-.+++++....+.-......+++.+.+.+..++...+.++.-.. ++++-.--...++
T Consensus 8 ~~~~~~l~~~~v~g~~~~~~~~~~~R~~~~~~~~~~a~~v~~~t~~g~~~~~F~kev~~ElkKV~WPtr~E~~~~T~vVi 87 (116)
T 3j01_B 8 WVVVVALLLVAIVGNYLYRDIMLPLRALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVA 87 (116)
T ss_dssp THHHHHHHTTHHHHHHHTTTCCSCSSCCCTHHHHHHHHHHHHHHTTTSCTTTCSSSHHHHHHHHHTTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhheeeCcCHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 020855 208 GASATYSLYLSLLQLSFEKVIK 229 (320)
Q Consensus 208 ~Asal~gL~l~L~ql~feKv~k 229 (320)
..++..++++.++...+++.++
T Consensus 88 v~vii~al~l~~vD~~~~~~v~ 109 (116)
T 3j01_B 88 AVTAVMSLILWGLDGILVRLVS 109 (116)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!