Query 020855
Match_columns 320
No_of_seqs 144 out of 207
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 09:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 27.7 18 0.0013 29.0 3.0 9 218-226 367-375 (417)
2 d1pv7a_ f.38.1.2 (A:) Lactose 9.5 3.7E+02 0.027 20.5 15.1 64 156-230 280-343 (417)
3 d1ffta_ f.24.1.1 (A:) Cytochro 7.2 5.2E+02 0.038 23.2 7.8 121 149-271 311-435 (501)
4 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 4.9 1.1E+02 0.0081 19.1 1.0 7 64-70 40-46 (46)
5 d1kqfc_ f.21.1.1 (C:) Formate 4.6 2.4E+02 0.017 21.7 3.2 61 33-93 10-70 (216)
6 d1fftc_ f.25.1.1 (C:) Cytochro 4.5 6.1E+02 0.044 19.0 5.7 18 239-256 130-147 (185)
7 d2dyna_ b.55.1.1 (A:) Dynamin 4.2 1.3E+02 0.0095 20.6 1.0 13 73-85 98-110 (111)
8 d1eysm_ f.26.1.1 (M:) M (mediu 4.1 8E+02 0.059 21.0 6.5 40 147-186 180-219 (318)
9 d1wpga4 f.33.1.1 (A:1-124,A:24 3.4 1.2E+03 0.084 19.8 11.7 15 76-90 371-385 (472)
10 d1l7va_ f.22.1.1 (A:) ABC tran 3.2 1.1E+03 0.081 19.3 7.0 26 205-230 58-83 (324)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=27.74 E-value=18 Score=28.97 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 020855 218 SLLQLSFEK 226 (320)
Q Consensus 218 ~L~ql~feK 226 (320)
.+....+++
T Consensus 367 ~~~G~l~~~ 375 (417)
T d1pv7a_ 367 VLAGNMYES 375 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555554
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.45 E-value=3.7e+02 Score=20.48 Aligned_cols=64 Identities=3% Similarity=-0.111 Sum_probs=30.8
Q ss_pred HHHHhccCCchHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020855 156 SFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKK 230 (320)
Q Consensus 156 s~~i~~qkft~~~insvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~~tL~Asal~gL~l~L~ql~feKv~k~ 230 (320)
..+..|.+-.+....+.++..++..++...+ +...=....+...+.+|...+...-...+..++
T Consensus 280 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 343 (417)
T d1pv7a_ 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred hhhhcccccccchhhhHHHHHHhhhcccccc-----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 3444444444455555555555555555432 122223334444555555555555555554443
No 3
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=5.2e+02 Score=23.19 Aligned_cols=121 Identities=10% Similarity=0.170 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhccCCchHHH---HHHHHHHHHHHHhhccCCCCCCCCCCCcchHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 020855 149 LAFNAFFSFFLNSQKFTPFIF---NSLVLLTISATLLAVNADSENTSGVSKGNYVIGFL-CTLGASATYSLYLSLLQLSF 224 (320)
Q Consensus 149 L~FTAiFs~~i~~qkft~~~i---nsvVLLt~~a~LL~l~~~s~~~~~~s~~~y~iGf~-~tL~Asal~gL~l~L~ql~f 224 (320)
..||-+-+..--+.|++.... ..+++.++|..-=-++.+..-+.-..+.-|+.|-+ .++..++.+++...+. .-+
T Consensus 311 ~~f~w~~tl~~g~~~~~~~~l~~l~fi~~F~~GG~tGi~~a~~~~d~~~H~T~~VvgHFH~~~~~~~v~~~~~~~y-~~~ 389 (501)
T d1ffta_ 311 KIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMT-YWW 389 (501)
T ss_dssp HHHHHHHTTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTTTBHHHHHHHHHHHHTTTHHHHHHHHH-HHH
T ss_pred HHHHHHHHhcCCeeccchhHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhccccccccceeeeecHHHHHHHHHHH-HHH
Confidence 355666665566778887443 34444444443211222221122344556778877 5667777777755544 445
Q ss_pred HHhhcccceeEEehhHHHHHHHHHHHHHhHhhccCCccchhHhhccc
Q 020855 225 EKVIKKETFSVVLDMQIYSSFVATCGCVVGLFASGEWKGLSKEMNGY 271 (320)
Q Consensus 225 eKv~k~~t~~~vlemQi~~slvAt~~~~vGl~~sgd~~~i~~E~~~F 271 (320)
.|.-.|+-..-....|....+++......+|..-| ...++|....|
T Consensus 390 P~l~Gr~l~~~l~~~~f~~~~iG~~~~f~pm~~~G-~~G~pRR~~~y 435 (501)
T d1ffta_ 390 PKAFGFKLNETWGKRAFWFWIIGFFVAFMPLYALG-FMGMTRRLSQQ 435 (501)
T ss_dssp HHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCBTTCSCC
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCcCCC
Confidence 77776663333446899999999999999999985 67777665444
No 4
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.91 E-value=1.1e+02 Score=19.11 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=4.0
Q ss_pred HhHhCCC
Q 020855 64 LYYDKGG 70 (320)
Q Consensus 64 ~Yf~~gG 70 (320)
.||++||
T Consensus 40 ~yfe~gg 46 (46)
T d1v92a_ 40 SFYEDGG 46 (46)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 4566655
No 5
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=4.62 E-value=2.4e+02 Score=21.72 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=35.1
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHhHHHHhHhCCCCchhHHHHHHhhchhhHHHHhhh
Q 020855 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPILCC 93 (320)
Q Consensus 33 ~~~k~~~~w~lv~~~~~~ll~G~~~~~LL~r~Yf~~gG~s~Wl~t~vQtaGfPlll~pl~~ 93 (320)
+..-|.-||..++.-+++++.|-....--...-..-.|...|...+-..+|+.++...++.
T Consensus 10 ~~~~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~~ 70 (216)
T d1kqfc_ 10 KFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM 70 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345577888888777778777433210111112334455666777777887776555443
No 6
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=6.1e+02 Score=18.99 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHhHhh
Q 020855 239 MQIYSSFVATCGCVVGLF 256 (320)
Q Consensus 239 mQi~~slvAt~~~~vGl~ 256 (320)
+.+..+++...++.....
T Consensus 130 lHV~~Gli~L~~~~~r~~ 147 (185)
T d1fftc_ 130 LHVTSGLIWMAVLMVQIA 147 (185)
T ss_dssp THHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 7
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.17 E-value=1.3e+02 Score=20.64 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=12.0
Q ss_pred hhHHHHHHhhchh
Q 020855 73 KWMATFVQSAGFP 85 (320)
Q Consensus 73 ~Wl~t~vQtaGfP 85 (320)
.|+.++.+.+.+|
T Consensus 98 ~W~~al~~A~~~p 110 (111)
T d2dyna_ 98 SWKASFLRAGVYP 110 (111)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCC
Confidence 8999999998888
No 8
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.10 E-value=8e+02 Score=21.01 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhccC
Q 020855 147 TQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (320)
Q Consensus 147 TQL~FTAiFs~~i~~qkft~~~insvVLLt~~a~LL~l~~ 186 (320)
+.|=+|..|++-...--.||+-..|++.+.-++.++++|-
T Consensus 180 ~HLDW~~~fs~~ygN~~YNPfHmlsIafl~gsaLl~AmHG 219 (318)
T d1eysm_ 180 PHLDWTAAFSIRYGNLYYNPFHMLSIAFLYGSALLFAMHG 219 (318)
T ss_dssp HHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhceeeeCHHHHHHHHHHHHHHHHHHHhh
Confidence 4566888899888888899999999999999999888763
No 9
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.36 E-value=1.2e+03 Score=19.75 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=7.4
Q ss_pred HHHHHhhchhhHHHH
Q 020855 76 ATFVQSAGFPILLPI 90 (320)
Q Consensus 76 ~t~vQtaGfPlll~p 90 (320)
...-||..|=.+...
T Consensus 371 ~~~a~T~~F~~lv~~ 385 (472)
T d1wpga4 371 APEPMTMALSVLVTI 385 (472)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 344556655544433
No 10
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=3.23 E-value=1.1e+03 Score=19.30 Aligned_cols=26 Identities=8% Similarity=-0.047 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020855 205 CTLGASATYSLYLSLLQLSFEKVIKK 230 (320)
Q Consensus 205 ~tL~Asal~gL~l~L~ql~feKv~k~ 230 (320)
+=+.++.+-|..+++....+|.+.|.
T Consensus 58 PR~l~a~l~Ga~La~sG~~lQ~~~rN 83 (324)
T d1l7va_ 58 PRTLAVLLVGAALAISGAVMQALFEN 83 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33455555555555555555555443
Done!