BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020857
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 136/228 (59%), Gaps = 19/228 (8%)
Query: 6 LNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 64
+NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDAR
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 144
Query: 65 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 124
V+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++
Sbjct: 145 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETN 204
Query: 125 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 184
K + ++ N +P+N TVY G +A +T + + F G I
Sbjct: 205 TKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IM 249
Query: 185 EVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
E+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 250 EIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 294
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 55/228 (24%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR----SRGFG----- 78
ED ++VG+LS +VT+ + FS C +++ +Q R S GF
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 79 ------FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELT 132
FV F +DA +A+ + G+ + ++++ NWAT
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-------------------- 102
Query: 133 NGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRV 188
S K+T+N + V+VG+L+PE+T D+ F G A V++++
Sbjct: 103 --PSSQKKDTSN---------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMAT 151
Query: 189 QRDKGFGFVRYSTHAEAALAI-QMGNTTQSSYLFGKQMKCSWGSKPTP 235
+ KG+GFV + +A AI MG +L G+Q++ +W ++ P
Sbjct: 152 GKSKGYGFVSFYNKLDAENAIVHMG----GQWLGGRQIRTNWATRKPP 195
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGDLS 42
AI+ + G+ L G+ I+ NWA S Q +T + ++ G ++
Sbjct: 171 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 43 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102
+TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEG 284
Query: 103 RQIRCNWATKGAGNNEDKQSSD 124
++C W + ++ Q D
Sbjct: 285 HVVKCYWGKESPDMTKNFQQVD 306
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 136/228 (59%), Gaps = 19/228 (8%)
Query: 6 LNGRHLFGQPIKVNWAYA-SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 64
+NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + + F+ + SDAR
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDAR 127
Query: 65 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSD 124
V+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+ + Q ++
Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187
Query: 125 AKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE 184
K + ++ N +P+N TVY G +A +T + + F G I
Sbjct: 188 TKQL---------RFEDVVNQSSPKN----CTVYCGGIASGLTDQLMRQTFSPFGQ--IM 232
Query: 185 EVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
E+RV +KG+ FVR+STH AA AI N T + G +KC WG +
Sbjct: 233 EIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT---IEGHVVKCYWGKE 277
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 44/221 (19%)
Query: 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87
ED ++VG+LS +VT+ + FS C +++ + + + FV F +D
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRD 60
Query: 88 AQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEA 147
A +A+ + G+ + ++++ NWAT S K+T+N
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT----------------------PSSQKKDTSN--- 95
Query: 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHA 203
+ V+VG+L+PE+T D+ F G A V++++ + KG+GFV +
Sbjct: 96 ------HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
Query: 204 EAALAI-QMGNTTQSSYLFGKQMKCSWGSK--PTPPGTSSN 241
+A AI MG +L G+Q++ +W ++ P P T N
Sbjct: 150 DAENAIVHMG----GQWLGGRQIRTNWATRKPPAPKSTQEN 186
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAY------ASGQREDTS-------------GHFNIFVGDLS 42
AI+ + G+ L G+ I+ NWA S Q +T + ++ G ++
Sbjct: 154 AIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 213
Query: 43 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102
+TD + FS + + RV +G+ FV F + A AI + G +
Sbjct: 214 SGLTDQLMRQTFSPFGQIMEIRVF------PEKGYSFVRFSTHESAAHAIVSVNGTTIEG 267
Query: 103 RQIRCNWATKGAGNNEDKQSSD 124
++C W + ++ Q D
Sbjct: 268 HVVKCYWGKESPDMTKNFQQVD 289
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 30/239 (12%)
Query: 6 LNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFAC 53
+NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 54 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113
F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 173
+ S+ K + S D E N +P N TVY G + +T+ + +
Sbjct: 186 PPAPKSTYESNTKQL-------SYD--EVVNQSSPSN----CTVYCGGVTSGLTEQLMRQ 232
Query: 174 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
F G I E+RV DKG+ FVR+++H AA AI N T + G +KC WG +
Sbjct: 233 TFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 31/205 (15%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS ++ S+D +
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTV-----VSTQRSQD---------------HF 106
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-Q 210
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AI Q
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 211 MGNTTQSSYLFGKQMKCSWGSKPTP 235
MG +L G+Q++ +W ++ P
Sbjct: 167 MG----GQWLGGRQIRTNWATRKPP 187
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 135/239 (56%), Gaps = 30/239 (12%)
Query: 6 LNGRHLFGQPIKVNWAYA-SGQREDTSG-----------HFNIFVGDLSPEVTDATLFAC 53
+NGR + G+ +KVNWA S Q++DTS HF++FVGDLSPE+T + A
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 54 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113
F+ + SDARV+ D TG+S+G+GFVSF N+ DA++AI + G+WLG RQIR NWAT+
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 185
Query: 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR 173
+ S+ K + S D E + +P N TVY G + +T+ + +
Sbjct: 186 PPAPKSTYESNTKQL-------SYD--EVVSQSSPNN----CTVYCGGVTSGLTEQLMRQ 232
Query: 174 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
F G I E+RV DKG+ FVR+S+H AA AI N T + G +KC WG +
Sbjct: 233 TFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT---IEGHVVKCYWGKE 286
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 103/205 (50%), Gaps = 31/205 (15%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+LS +VT+A + FS C + +++ D T + + FV F + A +A+ +
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
G+ + ++++ NWAT + +D SS ++ S+D +
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTV-----VSTQRSQD---------------HF 106
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAI-Q 210
V+VG+L+PE+T D+ F G A V++++ + KG+GFV + +A AI Q
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 211 MGNTTQSSYLFGKQMKCSWGSKPTP 235
MG +L G+Q++ +W ++ P
Sbjct: 167 MG----GQWLGGRQIRTNWATRKPP 187
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 14/224 (6%)
Query: 14 QPIKVNWA-YASGQ-REDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQK 70
QP ++NWA +++G+ R +T F+IFVGDL+ +VTD L F S YPS A+V+ D
Sbjct: 155 QPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDAN 214
Query: 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 130
TG S+G+GFV F ++ + A+ ++ G + SR +R AT + ++ SS A V
Sbjct: 215 TGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQYSSQA---VI 271
Query: 131 LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190
L+ G + +G T +++ + + TT++VG L EVT +L + F+ G + V++
Sbjct: 272 LSGGYASNGAATHGSQS-DGDSSNTTIFVGGLDSEVTDEELRQSFNQFGE--VVSVKIPA 328
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 233
KG GFV++S + A AIQ S + GKQ ++ SWG P
Sbjct: 329 GKGCGFVQFSDRSSAQEAIQ----KLSGAIIGKQAVRLSWGRSP 368
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
I++GDL + ++ L +CFS +++ +++TG+S +GFV F A+ +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 96 TGKWLGSRQ--IRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
G + + + R NWA G + SD
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETGSD----------------------------- 176
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++VG+LA +VT L F S GA V+ + KG+GFVR+ +E + A
Sbjct: 177 -FSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRA 235
Query: 209 I 209
+
Sbjct: 236 M 236
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG------FGFVRYSTHAEAALAI 209
T+++G+L + + LH F AG + V++ R+K +GFV ++THA A +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQ--AGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVL 142
Query: 210 QMGNTT 215
Q N T
Sbjct: 143 QSYNGT 148
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 16/226 (7%)
Query: 14 QPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQ 69
QP ++NWA +++G++ + ++FVGDLSP+VTD L FS YPS A+V+ D
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 238
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSV 128
TGRS+G+GFV F ++ + A+ ++ G + +RQ+R AT K A N+ + SS A
Sbjct: 239 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQA--- 295
Query: 129 VELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188
V L G +G +++ + T++VG + P+V DL + F G + V++
Sbjct: 296 VILAGGHGSNGSMGYGSQS-DGESTNATIFVGGIDPDVIDEDLRQPFSQFGE--VVSVKI 352
Query: 189 QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 233
KG GFV+++ A AI+ N T + GK ++ SWG P
Sbjct: 353 PVGKGCGFVQFADRKSAEDAIESLNGT----VIGKNTVRLSWGRSP 394
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 39/199 (19%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VGDL + + L +CFS S +V+ ++ T +S G+GFV F ++ A+ + +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 96 TGKWL--GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
+G + + R NWA+ G A EN P
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEK----------------------------RAVENGPD 201
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+V+VG+L+P+VT + LH F A V+ + R KG+GFVR+ E + A
Sbjct: 202 -LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 209 IQMGNTTQSSYLFGKQMKC 227
+ N +Y +QM+
Sbjct: 261 LTEMN---GAYCSNRQMRV 276
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 147/311 (47%), Gaps = 16/311 (5%)
Query: 3 ILSLNGRHLFGQPI--KVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YP 58
+ + NG + G + ++NWA + SGQ+ D +IFVGDL+P+VTD L F V Y
Sbjct: 82 LQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYS 141
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
S A+V+ D TGRS+G+GFV F + + A+ ++ G + +R +R + AT N
Sbjct: 142 SVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATP-KKNVG 200
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
+Q K+V +T S+ PE++ TT+ V NL VT+ +L + F L
Sbjct: 201 VQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQL 260
Query: 179 GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTPPGT 238
G + V++ KG+G+V++ T A A+Q Q + + ++ SW P G
Sbjct: 261 GEVIY--VKIPATKGYGYVQFKTRPSAEEAVQR---MQGQVIGQQAVRISWSKNPGQDGW 315
Query: 239 SSNPLPPPAAAPIPGLSAADLLAY--ERQIAMSKMGGVHALMHPQ---AQHPLKQAAMGV 293
+ P D AY + ++ GG +PQ + +A G
Sbjct: 316 VTQADPNQWNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAG- 374
Query: 294 GSAGASQAIYD 304
G AGA Q +YD
Sbjct: 375 GVAGAEQELYD 385
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 38/182 (20%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++GDL V + L +CFS +V+ ++ TG+ G+GF+ F + A+ +
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 95 LTGKWLGSRQI--RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
G + ++ R NWA+ G+G D P++
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDA--------------------------GPDH-- 116
Query: 153 QYTTVYVGNLAPEVTQLDLHR----HFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAAL 207
+++VG+LAP+VT L H+ S+ GA V+ + R KG+GFV+++ +E
Sbjct: 117 ---SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNR 173
Query: 208 AI 209
A+
Sbjct: 174 AM 175
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 25/228 (10%)
Query: 14 QPIKVNWA-YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQ 69
QP ++NWA +++G++ + +IFVGDL+P+V+DA L F+ YPS A+V+ D
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDS 249
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT-KGAGNNEDKQSSDAKSV 128
TGRS+G+GFV F ++ + A+ ++ G + SRQ+R AT K A + S A ++
Sbjct: 250 NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTL 309
Query: 129 V--ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 186
NGS DG E+ N +T++VG L +VT+ DL + F G + V
Sbjct: 310 AGGHGGNGSMSDG-ESNN----------STIFVGGLDADVTEEDLMQPFSDFGE--VVSV 356
Query: 187 RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 233
++ KG GFV+++ A AI N T + GK ++ SWG P
Sbjct: 357 KIPVGKGCGFVQFANRQSAEEAIGNLNGT----VIGKNTVRLSWGRSP 400
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 39/199 (19%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VGDL + + L CFS S +V+ +++T +S G+GFV F ++ A+ A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 96 TGKWL--GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
+G + + R NWA+ G A EN P
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEK----------------------------RASENGPD 212
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
+++VG+LAP+V+ L F GA V+ + R KG+GFVR+ E + A
Sbjct: 213 L-SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 209 IQMGNTTQSSYLFGKQMKC 227
+ N ++ +QM+
Sbjct: 272 MTEMN---GAFCSSRQMRV 287
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 30/227 (13%)
Query: 14 QPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQ 69
QP ++NWA +++G++ E+ +IFVGDLSP+V+D L FS YPS A+V+ D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G SR +R AT
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATP----------------- 276
Query: 130 ELTNGSSEDGKETTN--TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187
TNG + G N PE + TT++VG L VT DL + F+ G I V+
Sbjct: 277 RKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGE--IVSVK 334
Query: 188 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 233
+ KG GFV++ A A++ N T + GKQ ++ SWG P
Sbjct: 335 IPVGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQTVRLSWGRNP 377
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFVG L VTD L F+ + ++ +G GFV F N+ +A+ A+ L
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSD 124
G +G + +R +W A +KQ D
Sbjct: 360 NGTVIGKQTVRLSWGRNPA----NKQPRD 384
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 17/225 (7%)
Query: 16 IKVNWAYASGQREDT----SGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQK 70
K+NWA G + + F+IFVGDL P D+ LF F S+YPSC+ A+++ D
Sbjct: 160 FKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPV 219
Query: 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 130
TG SR +GFV F ++++ Q A+ + G R +R + A+ + + S A S +
Sbjct: 220 TGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP-----KSRASIAADSALG 274
Query: 131 LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190
+ S+ + + N + +P TTV+VG LA +++ DL F G I +++
Sbjct: 275 IVPTSTSNRQP--NQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGR--ILNIKIPF 330
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 235
KG GFV+YS + A AI NT Q + + ++ +WG P
Sbjct: 331 GKGCGFVQYSEKSAAEKAI---NTMQGALVGTSHIRLAWGHNTLP 372
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 73/112 (65%), Gaps = 1/112 (0%)
Query: 1 MAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
+A+ +LNG+ + +K+NWA+ S Q+ + FN+FVGDL+ V D TL F +PS
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY 188
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112
VMWD +TG SRG+GFVSF +Q DAQ+A++ + G+ L R +R NWA K
Sbjct: 189 LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+L +T+ L F V ++ ++M D K ++ + FV + DA A+ L
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTL 135
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
GK + + ++ NWA + +QSS +T N
Sbjct: 136 NGKQIENNIVKINWAFQS------QQSS---------------SDDTFN----------- 163
Query: 156 TVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 211
++VG+L V L F L V+ +++ +G+GFV +++ +A A+
Sbjct: 164 -LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM-- 220
Query: 212 GNTTQSSYLFGKQMKCSWGSK 232
++ Q L G+ ++ +W +K
Sbjct: 221 -DSMQGQDLNGRPLRINWAAK 240
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 211
P+ TT Y+GN+ T+ DL F + G I + + +KG F++Y TH +AA+ I
Sbjct: 338 PRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYPEKGCCFIKYDTHEQAAVCI-- 393
Query: 212 GNTTQSSYLF-GKQMKCSWGSK 232
+++ F G+ ++ WG +
Sbjct: 394 --VALANFPFQGRNLRTGWGKE 413
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 27/225 (12%)
Query: 14 QPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKT 71
Q ++NWA +SG + D S + IFVGDL+ +VTD L F YPS A+V+ D+ T
Sbjct: 134 QLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVT 193
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT--KGAGNNEDKQSSDAKSVV 129
GR++G+GFV F ++ + A+ ++ G +R +R A KG D S A V
Sbjct: 194 GRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVT 253
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+N+P TTV+VG L VT L F G I V++
Sbjct: 254 T------------------DNDPNNTTVFVGGLDASVTDDHLKNVFSQYGE--IVHVKIP 293
Query: 190 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234
K GFV++S + A A++M N Q L G ++ SWG P+
Sbjct: 294 AGKRCGFVQFSEKSCAEEALRMLNGVQ---LGGTTVRLSWGRSPS 335
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+++GDL + + L+ CF+ A+V+ +++TG+ G+GF+ F + A+ +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 96 TGKWLGS---RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
+ S + R NWA+ +G+ D ++P
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRD------------------------------DSP 153
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHAEAAL 207
Y T++VG+LA +VT L F + GA V+ + R KG+GFVR+S +E
Sbjct: 154 DY-TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIR 212
Query: 208 AIQMGN 213
A+ N
Sbjct: 213 AMTEMN 218
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 148/320 (46%), Gaps = 57/320 (17%)
Query: 4 LSLNGR------HLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACF 54
+S+N + HLF K+NWA G RE + + ++IFVGDLSP V + +++ F
Sbjct: 151 MSMNNKPIPGTNHLF----KLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLF 206
Query: 55 -SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113
S Y SC A++M D +T SRG+GFV F ++ D +SA+ ++ G+ G R IR AT
Sbjct: 207 ASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATP- 265
Query: 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY-----TTVYVGNLAPEVTQ 168
K + S V + S A + PQ+ +TV+VG L+ V++
Sbjct: 266 ------KSKAHVFSPVNVVPVSM---PPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSE 316
Query: 169 LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228
+L F + G V V++ KG GFV++ A +AI N Q L +++ S
Sbjct: 317 EELKYLFQNFGEIVY--VKIPPGKGCGFVQFVNRQSAEIAI---NQLQGYPLGNSRIRLS 371
Query: 229 WG-----------------SKPTPPGTSSNP---LPPPAA-APIPGLSAADLLAYER--Q 265
WG S+ T P TS P LPP A +P P ++ + L R
Sbjct: 372 WGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLALQTRGAP 431
Query: 266 IAMSKMGGVHALMHPQAQHP 285
I M G AL+ Q P
Sbjct: 432 IGMEISIGSPALVPDQMHIP 451
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 37/199 (18%)
Query: 22 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81
Y S + E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 82 FRNQQDAQSAINDLTGKWLGSRQI-RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGK 140
F + +A SA++ G+ + + NWA+ G +
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWASGGG------------------------LR 176
Query: 141 ETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFG 195
E + ++A E +++VG+L+P V + D++ F S A ++ + + +G+G
Sbjct: 177 EKSISKASE-----YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
Query: 196 FVRYSTHAE--AALAIQMG 212
FVR++ + +ALA G
Sbjct: 232 FVRFTDENDQKSALAEMQG 250
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 23/223 (10%)
Query: 14 QPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQKT 71
Q ++NWA +G+R D S IFVGDL+ +VTD L F SVY S A+V+ D+ T
Sbjct: 155 QNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRIT 214
Query: 72 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVEL 131
GRS+G+GFV F ++ + A+ ++ G +R +R G N+ + K+ +
Sbjct: 215 GRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRI-----GPAANKKPVGTPQKATYQ- 268
Query: 132 TNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191
N + G E++P TT++VG L P V + L + F G V V++
Sbjct: 269 -NPQATQG---------ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELV--HVKIVAG 316
Query: 192 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234
K GFV++ T A A A+ N TQ L G+ ++ SWG P+
Sbjct: 317 KRCGFVQFGTRASAEQALSSLNGTQ---LGGQSIRLSWGRSPS 356
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 38/182 (20%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL + + L CF A+V+ +++TG+S G+GF+ FR+ A++ +
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 95 LTGKWLGS--RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
G + + + R NWA+ GAG D +
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEH---------------------------- 176
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAAL 207
T++VG+LA +VT L F S+ GA V+ + R KG+GFV+++ +E
Sbjct: 177 ---TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLR 233
Query: 208 AI 209
A+
Sbjct: 234 AM 235
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 85
Q E + IFVG L P V + L FS Y +++ ++ G FV F +
Sbjct: 274 QGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG------FVQFGTR 327
Query: 86 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
A+ A++ L G LG + IR +W + D+
Sbjct: 328 ASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQTDQ 362
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 142 TTN-TEAPENNP-QYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVRVQRDKGFG 195
TTN +P NP + ++++G+L + + L F+ G A VI + + +G+G
Sbjct: 69 TTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYG 128
Query: 196 FVRYSTHAEAALAIQMGNTT 215
F+ + +HA A +Q N T
Sbjct: 129 FLEFRSHAAAETILQTYNGT 148
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 26/225 (11%)
Query: 14 QPIKVNWA-YASGQR--EDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQ 69
QP ++NWA +++G++ E+ +IFVGDL+P+V+DA L FS YPS A+V+ D
Sbjct: 176 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA 235
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G SR +R AT N +Q
Sbjct: 236 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ-------- 287
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
G T +E N TT++VG L VT DL + F G I V++
Sbjct: 288 ----GGYMPSGAFTRSEGDTIN---TTIFVGGLDSSVTDEDLKQPFSEFGE--IVSVKIP 338
Query: 190 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MKCSWGSKP 233
KG GFV++ A A++ N T + GKQ ++ SWG P
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGT----VIGKQTVRLSWGRNP 379
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
IFVG L VTD L FS + ++ +G GFV F N+ +A+ A+ L
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKL 361
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSD 124
G +G + +R +W A +KQ D
Sbjct: 362 NGTVIGKQTVRLSWGRNPA----NKQPRD 386
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 25/224 (11%)
Query: 14 QPIKVNWAYASG--QREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQ 69
Q ++NWA A +R T G IFVGDL+PEVTD L F +VY S A+V+ D+
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 70 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVV 129
TGRS+G+GFV F ++ + A+ ++ G++ +R +R A K+ +
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAAN-------------KNAL 237
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+ ++ T A +N+P TT++VG L VT +L F G + V++
Sbjct: 238 PMQPAMYQN---TQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGE--LLHVKIP 292
Query: 190 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233
K GFV+Y+ A A A+ + N TQ L G+ ++ SWG P
Sbjct: 293 PGKRCGFVQYANKASAEHALSVLNGTQ---LGGQSIRLSWGRSP 333
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
+++GDL + + + + F+ + A+V+ ++ TG+S G+GF+ F + A+ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 96 TGKWLGSRQ--IRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQ 153
G + S + R NWA GA G++ TE P++
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGA------------------------GEKRFQTEGPDH--- 154
Query: 154 YTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALA 208
T++VG+LAPEVT L F ++ GA V+ + R KG+GFVR++ E A
Sbjct: 155 --TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 209 I 209
+
Sbjct: 213 M 213
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 25/224 (11%)
Query: 14 QPIKVNWA-YASGQREDTSG-HFNIFVGDLSPEVTDATLFACF-SVYPSCSDARVMWDQK 70
Q ++NWA +G+R G +FVGDL+P+VTD L F +VY S A+V+ D+
Sbjct: 151 QAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRT 210
Query: 71 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVE 130
TGRS+G+GFV F ++ + A+ ++ G++ SR +R G N+ + S
Sbjct: 211 TGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRT-----GPAANKKPLTMQPASY-- 263
Query: 131 LTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190
+ T + E++P TT++VG + VT+ DL F G V V++
Sbjct: 264 ----------QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELV--HVKIPA 311
Query: 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234
K GFV+Y+ A A A+ + N TQ L G+ ++ SWG P+
Sbjct: 312 GKRCGFVQYANRACAEQALSVLNGTQ---LGGQSIRLSWGRSPS 352
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 37/182 (20%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL P + + L F + + A+V+ +++ G S G+GF+ F N A+ +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 95 LTGKWLGSRQ--IRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNP 152
G + S + R NWA GAG E E PE+
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAG-------------------------ERRQAEGPEH-- 173
Query: 153 QYTTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAAL 207
TV+VG+LAP+VT L F ++ GA V+ + R KG+GFVR++ +E
Sbjct: 174 ---TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIR 230
Query: 208 AI 209
A+
Sbjct: 231 AM 232
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 112/268 (41%), Gaps = 54/268 (20%)
Query: 12 FGQPIKVNWAYASGQRED--TSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWD 68
F + ++NWA + + ++ F++FVGDLSP T+A L + F + S RVM D
Sbjct: 168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTD 227
Query: 69 QKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK---------------- 112
TG SR FGFV F ++ + + A+ +++GKW R +R +AT
Sbjct: 228 PLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQ 287
Query: 113 --------------------GAGNNEDKQSSDAKSVVELTNGSSEDGKE------TTNTE 146
NN + +S+ + L N E N
Sbjct: 288 QLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDS 347
Query: 147 APEN----NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH 202
P N +P TTV+VG L P+ T+ L F G I VR+ K GFV++
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGP--ILNVRIPNGKNCGFVKFEKR 405
Query: 203 AEAALAIQMGNTTQSSYLFGKQMKCSWG 230
+A +IQ Q + G ++ SWG
Sbjct: 406 IDAEASIQ---GLQGFIVGGSPIRLSWG 430
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 16 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSR 75
++VN + S + +FVG L P+ T+ L + F + + R+ +
Sbjct: 342 MRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI------PNGK 395
Query: 76 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
GFV F + DA+++I L G +G IR +W + N
Sbjct: 396 NCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSN 436
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 47/256 (18%)
Query: 14 QPIKVNWAYASGQRE-------DTSGHFNIFVGDLSPEVTDATLFACF-SVYPSCSDARV 65
+ +K+NWA +S + + +IFVGDL+P VT++ LF F + Y S S A++
Sbjct: 136 KKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKI 195
Query: 66 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG-----AGNNEDK 120
+ DQ TG S+G+GFV F N + Q A++++ G +L R I+ T G +GNN+
Sbjct: 196 VHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVG-PTSGQQQHVSGNNDYN 254
Query: 121 QSS--------DAKSVVE----LTNGSSEDGKETTNT--------EAPENN----PQYTT 156
+SS D++ + + L+NG++ G + + + P N P TT
Sbjct: 255 RSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTT 314
Query: 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH--AEAALAIQMGNT 214
V++G L+ VT+ +L +F G I V++ K GFV+Y AEAA+A G
Sbjct: 315 VFIGGLSSLVTEDELRAYFQPF--GTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFP 372
Query: 215 TQSSYLFGKQMKCSWG 230
+S +++ SWG
Sbjct: 373 IANS-----RVRLSWG 383
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 36/217 (16%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ +LN LF +PI++ + SG NIF+ +L + + LF FS + +
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNRDPSTR-LSGKGNIFIKNLDASIDNKALFETFSSFGTIL 163
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V D TGRS+G+GFV F ++ AQ+AI+ L G + +Q+ + D
Sbjct: 164 SCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD-- 220
Query: 122 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 181
E T T P++T VYV NL E+ + +L + F G
Sbjct: 221 -------------------ENTPT------PRFTNVYVKNLPKEIGEDELRKTFGKF--G 253
Query: 182 VIEEVRVQRDKG-----FGFVRYSTHAEAALAIQMGN 213
VI V RD+ FGFV + AA A++ N
Sbjct: 254 VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N++V +L E+ + L F + S A VM DQ +G SR FGFV+F + A SA+
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEK 288
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ G LG + A K + E+ + + + S Q
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKS-----------------QG 331
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQM 211
+Y+ NL V L F G +V + +GFGFV YS EA A+
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSE 391
Query: 212 GN 213
N
Sbjct: 392 MN 393
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L V D L FS Y + + ++VM + + G SRGFGFV++ N ++A A+++
Sbjct: 333 NLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSE 391
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQS 122
+ GK +G + + A + ED+++
Sbjct: 392 MNGKMIGRKPLYIALAQR----KEDRRA 415
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 38/221 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
AI LN + G+P ++ W+ QR+ + G NI++ +L P + + +L FS +
Sbjct: 95 AIEQLNYTLIKGKPCRIMWS----QRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFG 150
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V D+ G SRGFGFV F N+ DA+ AI + G + +++ + +
Sbjct: 151 NILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHV----SKK 205
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
D+QS + E ++T VYV N+ E +Q + F
Sbjct: 206 DRQS-----------------------KLEEVKAKFTNVYVKNIDQETSQEEFEELFGKY 242
Query: 179 G---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 216
G + V+E+ + +GFGFV + HA AA A+ N +
Sbjct: 243 GKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELE 283
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+FV +L + D L F+ + + + A+VM D+ TG SRGFGFV F ++A AI +
Sbjct: 323 NLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITE 381
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 142 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFG 195
TT +E P+ ++YVG L P V++ L+ F +G+ + +RV RD G+
Sbjct: 25 TTESETPKVETSGASLYVGELEPTVSEALLYDIFSPIGS--VSSIRVCRDAITNTSLGYA 82
Query: 196 FVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+V + H AI+ N T + GK + W +
Sbjct: 83 YVNFHDHEAGPKAIEQLNYT---LIKGKPCRIMWSQR 116
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 99/217 (45%), Gaps = 38/217 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAY--ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 59
AI LN L+G+PI+V +++ S +R SG NIF+ +L + L FS + +
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRR---SGAGNIFIKNLDESIDHKALHDTFSSFGN 149
Query: 60 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNED 119
+V D +G+S+G+GFV + N++ AQ AI L G L +Q+ +
Sbjct: 150 IVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR------- 201
Query: 120 KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 179
+Q D+ + N ++T VYV NLA T DL F G
Sbjct: 202 RQERDSTA----------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239
Query: 180 ---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213
+ V+ + + KGFGFV + +AA A++ N
Sbjct: 240 KITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 28/216 (12%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHF---NIFVGDLSPEVTDATLFACFSVYP 58
AI LNG L + + V +R+ T+ N++V +L+ TD L F Y
Sbjct: 180 AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ A VM D + G+S+GFGFV+F N DA A+ L G ++ W A
Sbjct: 240 KITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKE----WYVGRAQKKS 294
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++++ EL ++ KE + Q + +YV NL P ++ L F
Sbjct: 295 ERET-------ELRVRYEQNLKEAADKF------QSSNLYVKNLDPSISDEKLKEIFSPF 341
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 209
G + +V RD KG GFV ++T EA A+
Sbjct: 342 --GTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALA 208
T++YVG+L VT L F +G V VRV RD G+G+V ++ +AA A
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVT--VRVCRDLVTRRSLGYGYVNFTNPQDAARA 93
Query: 209 IQMGNTTQSSYLFGKQMKCSWGSK 232
IQ N L+GK ++ + +
Sbjct: 94 IQELNYIP---LYGKPIRVMYSHR 114
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1
Length = 392
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 90
S F IF GDL EV D L FS YPS A+V+ D++TG+++G+GFVSF++ D
Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVR 349
Query: 91 AINDLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
A+ ++ GK++GSR I+ W + KQ K
Sbjct: 350 AMREMNGKYVGSRPIKLRKSQWKDRNMDVVRKKQREKKK 388
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 38/221 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+
Sbjct: 95 AIEQLNYTPIKGRLCRIMWS----QRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFG 150
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+++ D+ G+S+GFGFV F + A+ AI+ L G L ++I
Sbjct: 151 DILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV----------- 198
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
+ ++ +++ E YT +YV N+ E T F
Sbjct: 199 ----------------APHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKF 242
Query: 179 GAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQ 216
G V + D KGFGFV Y H +A A++ N ++
Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 283
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 93/226 (41%), Gaps = 38/226 (16%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI +LNG L GQ I V + +R E+T H+ N++V +++ E TD F+
Sbjct: 182 AIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAK 241
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ A + D G+ +GFGFV++ +DA A+ L L ++ A K
Sbjct: 242 FGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK---K 297
Query: 117 NED----KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 172
NE K+ +A + ++ Q ++V NL V L
Sbjct: 298 NERMHVLKKQYEAYRLEKMAKY------------------QGVNLFVKNLDDSVDDEKLE 339
Query: 173 RHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGN 213
F G I +V R KGFGFV +ST EA AI N
Sbjct: 340 EEFAPY--GTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
Query: 126 KSVVELTNGSSEDGKE--TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI 183
K+ +L N + +D ++ T +E+ ++YVG+L P V++ L+ F +G+ +
Sbjct: 7 KTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGS--V 64
Query: 184 EEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV RD G+ +V ++ H AI+ N T + G+ + W +
Sbjct: 65 SSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTP---IKGRLCRIMWSQR 116
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
A+ SLN + +PI++ + SG N+F+ +L + + L+ FS + +
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTIL 173
Query: 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQ 121
+V D GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +D+
Sbjct: 174 SCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRA 228
Query: 122 SSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG-- 179
S++ +V P +T VYV NL E+T +L + F G
Sbjct: 229 RSESGAV-----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDI 265
Query: 180 -AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213
+ V+ + + + FGFV + + AA+A++ N
Sbjct: 266 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 300
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 78/185 (42%), Gaps = 27/185 (14%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N++V +L E+TD L F Y S A VM DQ +G SR FGFV+F + + A A+
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 95 LTGKWLGSRQIRCNWATKGAGNNED---KQSSDAKSVVELTNGSSEDGKETTNTEAPENN 151
+ G LG + A K + E+ K + S E GS+
Sbjct: 299 MNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN--------------- 343
Query: 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALA 208
+Y+ NL V L F G +V + +GFGFV YS EA LA
Sbjct: 344 -----LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 398
Query: 209 IQMGN 213
++ N
Sbjct: 399 MKEMN 403
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L V D L FS Y + + +VM + + G SRGFGFV++ N ++A A+ +
Sbjct: 343 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKE 401
Query: 95 LTGKWLGSRQIRCNWATK 112
+ GK +G + + A +
Sbjct: 402 MNGKMIGRKPLYVALAQR 419
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 37/182 (20%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P V ++ L F+ + RV D T RS G+ +V+F N +DA A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMES 118
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
L + R IR + N D + + GK
Sbjct: 119 LNYAPIRDRPIRIMLS------NRDPSTRLS-------------GK-------------- 145
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR---VQRDKGFGFVRYSTHAEAALAIQM 211
V++ NL + L+ F S G + +V V R KG+GFV++ A AI
Sbjct: 146 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 212 GN 213
N
Sbjct: 206 LN 207
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 39/223 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N L GQPI++ W+ G R+ SG NIF+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEMLKGQPIRIMWSQRDPGLRK--SGVGNIFIKNLEDSIDNKALYDTFSTFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V D+ SRGFGFV F + AQ AIN + G L R++ G+ + +
Sbjct: 126 LSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV-------FVGHFKSR 176
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
+ +A EL + E +T +YV NL +V + L F G
Sbjct: 177 REREA----ELGARALE----------------FTNIYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 181 GVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSS 218
+ V+V RD + FGFV + H EA A+ N + S
Sbjct: 217 ML--SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVS 257
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
+++VGDL P+VT+A L+ FS RV D T RS G+ +++F+ DA+ A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ + L + IR W+ + G KS V
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLR--------KSGV------------------------- 98
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQ 210
+++ NL + L+ F + G I +V D +GFGFV + TH A AI
Sbjct: 99 GNIFIKNLEDSIDNKALYDTFSTFGN--ILSCKVACDEHGSRGFGFVHFETHEAAQQAIN 156
Query: 211 MGN 213
N
Sbjct: 157 TMN 159
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 31/222 (13%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G NI+V +L +V + L FS
Sbjct: 154 AINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQ 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D +G SR FGFV+F ++AQ A+ + GK + R + A K
Sbjct: 214 FGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVER 272
Query: 117 -NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175
NE K+ + L Q +YV NL + L + F
Sbjct: 273 QNELKRRFEQMKQDRL------------------RRYQGVNLYVKNLDDSIDDDKLRKEF 314
Query: 176 HSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGN 213
GVI +V + KGFGFV +S+ EA A+ N
Sbjct: 315 SPY--GVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVT 46
A++ +NG+ + G+ + A +R++ N++V +L +
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS Y + A+VM + G S+GFGFV F + ++A A+ ++ G+ +G++ +
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLY 364
Query: 107 CNWATK 112
A +
Sbjct: 365 VALAQR 370
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+VT+ L+ F AG I +RV RD G+ ++ + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T L G+ ++ W +
Sbjct: 70 ---DTMNFEMLKGQPIRIMWSQR 89
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG----HF-NIFVGDLSPEVTDATLFACFSV 56
AI +NG L G+ + V + +RE G F N+++ + ++ D L F
Sbjct: 154 AIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ ++ E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRTF--------EQMKQDRITRY-----QVVNLYVKNLDDGIDDERLRKAFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 213
G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 101/239 (42%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIFV +L + + L+ S +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ V+ D+ S+G+GFV F + A+ AI + G L R++ G +
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV-------FVGQFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E + VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FPNVYIKNFGEDMDDERLKDLFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ D + N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 150 NNPQYTT--VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYST 201
+ P Y T +YVG+L P+VT+ L+ F AG I +R+ RD + +V +
Sbjct: 4 STPSYPTASLYVGDLHPDVTEAMLYEKFSP--AGPILSIRICRDLITSGSSNYAYVNFQH 61
Query: 202 HAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+A A+ +T + GK ++ W +
Sbjct: 62 TKDAEHAL---DTMNFDVIKGKPVRIMWSQR 89
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1
Length = 392
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS YPS A+V+ D++TG+++G+GFVSF++ D A
Sbjct: 293 FRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRATR 352
Query: 94 DLTGKWLGSRQIRCN---WATKGAGNNEDKQSSDAK 126
++ GK++GSR I+ W + KQ K
Sbjct: 353 EMNGKYVGSRPIKLRKSQWKDRNIDVVRKKQREKKK 388
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 38/221 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
AI LN + G+ ++ W+ QR+ + G NIF+ +L P++ + L+ FSV+
Sbjct: 92 AIEKLNFTPIKGKLCRIMWS----QRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFG 147
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ ++V D+ TG+S+GFG+V F + A AI+ L G L ++I G +
Sbjct: 148 NILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV-------GPHL 199
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHR---HF 175
K+ ++K E +T VY+ N+ E T + F
Sbjct: 200 SKKERESK--------------------FEEMKANFTNVYIKNINTETTDKEFEELVAKF 239
Query: 176 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQ 216
+ V+E +KGFGFV + H +A ++ N T+
Sbjct: 240 GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTE 280
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE----DTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI +LNG L GQ I V + +RE + +F N+++ +++ E TD +
Sbjct: 179 AIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAK 238
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +D+ V+ G ++GFGFV+F N +DA + +L + + N A K
Sbjct: 239 F-GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYER 297
Query: 117 NED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175
++ K+ +A + ++ Q +++ NL + L F
Sbjct: 298 QQELKKQYEATRMEKMAKY------------------QGINLFIKNLDDSIDDKKLEEEF 339
Query: 176 HSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 213
G +V + KGFGFV +ST EA AI N
Sbjct: 340 APYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 126 KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 185
K+ +L N S +D +E TN E ++ ++YVG+L P V++ L+ F +GA +
Sbjct: 7 KTAEQLENLSLQDKQEGTNEEN-QSETVSASLYVGDLDPSVSEAHLYDIFSPIGA--VSS 63
Query: 186 VRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+RV RD G+ +V ++ H A AI+ N T + GK + W +
Sbjct: 64 IRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTP---IKGKLCRIMWSQR 113
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 28 EDTS------GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81
EDTS F IF GDL EV D L FS YPS A+V+ D++TG+++G+GFVS
Sbjct: 291 EDTSLLEWETDDFRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVS 350
Query: 82 FRNQQDAQSAINDLTGKWLGSRQIRCN 108
F++ D A+ ++ G+++GSR I+
Sbjct: 351 FKDPNDYVRAMREMNGRYVGSRPIKLR 377
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 213
G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E +T VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ + F N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+VT+ L+ F AG I +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + GK ++ W +
Sbjct: 70 ---DTMNFDVIKGKPVRIMWSQR 89
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAI 209
G +V ++ R KGFGFV +S+ EA A+
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV 350
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E +T VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ + F N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+VT+ L+ F AG I +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + GK ++ W +
Sbjct: 70 ---DTMNFDVIKGKPVRIMWSQR 89
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 42/223 (18%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
AI LN + G+P ++ W+ QR+ + SG NIF+ +L P + + L FS +
Sbjct: 124 AIEELNYTPVEGRPCRIMWS----QRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG 179
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+V D G+S+ FGFV + ++ AQ+AI + G L R++ G +
Sbjct: 180 KILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYV-------GKHV 231
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
K+ ++K E YT +YV N+ T+ + F
Sbjct: 232 SKKDRESK--------------------LEEMKANYTNIYVKNIDLAYTEKEFEELFAPF 271
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQ 216
G I + +++D KGFGFV + H AA A++ N +
Sbjct: 272 GK--ITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKE 312
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 40/183 (21%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG+L+P V +ATLF FS + RV D + +S G+ +V++ +D + AI +L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
+ R R W+ + + ++S D
Sbjct: 129 NYTPVEGRPCRIMWSQR---DPSARRSGDG------------------------------ 155
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQ 210
+++ NL P + LH F + G I V+V D K FGFV Y T A AI+
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGK--ILSVKVATDDLGQSKCFGFVHYETEEAAQAAIE 213
Query: 211 MGN 213
N
Sbjct: 214 SVN 216
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 28/217 (12%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT-----SGHFNIFVGDLSPEVTDATLFACFSV 56
AI S+NG L + + V + RE + + NI+V ++ T+ F+
Sbjct: 211 AIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAP 270
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + + D + G+S+GFGFV+F + A A+ +L K + ++I A K
Sbjct: 271 FGKITSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRER 329
Query: 117 NED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175
E+ K+ +A + +L+ Q ++V NL ++ L F
Sbjct: 330 TEELKKQYEAVRLEKLSKY------------------QGVNLFVKNLDEQIDSEKLEEEF 371
Query: 176 HSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
G +V V + KGFGFV +ST EA AI
Sbjct: 372 KPFGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAI 408
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQR-EDTSGHF--------------NIFVGDLSPEVT 46
A+ LN + + GQ I V A +R E+ + N+FV +L ++
Sbjct: 304 AVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQID 363
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
L F + + + ++VM D G+S+GFGFV F ++A AI ++ + + + +
Sbjct: 364 SEKLEEEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLY 422
Query: 107 CNWA-TKGAGNNEDKQSSDAKSVVELTNGSSEDG 139
A K ++ +Q A++ + + N ++ G
Sbjct: 423 VALAQRKDVRRSQLEQQIQARNQMRMQNAAAAGG 456
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
+SSDA S + + E G+ + E ++YVG L P V + L F +G
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAE------NSASLYVGELNPSVNEATLFEIFSPIGQ 92
Query: 181 GVIEEVRVQRDK------GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
+ +RV RD G+ +V Y + AI+ N T + G+ + W +
Sbjct: 93 --VASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTP---VEGRPCRIMWSQR 145
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 434
Query: 94 DLTGKWLGSRQIRCN 108
++ GK++GSR I+
Sbjct: 435 EMNGKYVGSRPIKLR 449
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1
Length = 480
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 440
Query: 94 DLTGKWLGSRQIRCN 108
++ GK++GSR I+
Sbjct: 441 EMNGKYVGSRPIKLR 455
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 408
Query: 94 DLTGKWLGSRQIRCN 108
++ GK++GSR I+
Sbjct: 409 EMNGKYVGSRPIKLR 423
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1
Length = 474
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
F IF GDL EV D L FS +PS A+V+ D++TG+++G+GFVSF++ D A+
Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMR 434
Query: 94 DLTGKWLGSRQIRCN 108
++ GK++GSR I+
Sbjct: 435 EMNGKYVGSRPIKLR 449
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 34/216 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
AI LN + G+P ++ W+ R+ SG NIF+ +L P + + L FS +
Sbjct: 107 AIQELNYAEINGRPCRIMWSERDPAIRKKGSG--NIFIKNLHPAIDNKALHETFSTFGEV 164
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V D+ G SRGFGFV F+ + DA+ AI + G + ++
Sbjct: 165 LSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVP-------- 215
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
D S +E EA N +T +YV N+ E T + + F G
Sbjct: 216 -KKDRISKLE---------------EAKAN---FTNIYVKNIDVETTDEEFEQLFSQYGE 256
Query: 181 GV---IEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213
V +E+ + KGFGFV + H AA A++ N
Sbjct: 257 IVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELN 292
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQR----EDTSGHF-NIFVGDLSPEVTDATLFACFSV 56
AI ++NG + G + V R E+ +F NI+V ++ E TD FS
Sbjct: 194 AIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQ 253
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
Y A + D + G+ +GFGFV+F + A A+ +L GK S+ + A K
Sbjct: 254 YGEIVSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYER 312
Query: 117 NED-KQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 175
E+ K+ + + +L Q +++ NL + L F
Sbjct: 313 AEELKKQYEQYRLEKLAKF------------------QGVNLFIKNLDDSIDDEKLKEEF 354
Query: 176 HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 213
G I RV RD KGFGFV +S+ EA A+ N
Sbjct: 355 APYG--TITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKN 395
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 213
G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E +T VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ + F N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+VT+ L+ F AG I +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + GK ++ W +
Sbjct: 70 ---DTMNFDVIKGKPVRIMWSQR 89
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 213
G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E +T VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ + F N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+VT+ L+ F AG I +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + GK ++ W +
Sbjct: 70 ---DTMNFDVIKGKPVRIMWSQR 89
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI +NG L + + V + +RE G N+++ + ++ D L F
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGK 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ +VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K
Sbjct: 214 FGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++Q+ + E K+ T Q +YV NL + L + F
Sbjct: 271 --ERQTELKRKF--------EQMKQDRITRY-----QGVNLYVKNLDDGIDDERLRKEFS 315
Query: 177 SLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGN 213
G +V ++ R KGFGFV +S+ EA A+ N
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 46/239 (19%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ ++N + G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
+ +V+ D+ S+G+GFV F Q+ A+ AI + G L R++ G +
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFK 174
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
++ +A EL + E +T VY+ N ++ L F
Sbjct: 175 SRKEREA----ELGARAKE----------------FTNVYIKNFGEDMDDERLKDLFGKF 214
Query: 179 GAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232
G + V+V D KGFGFV + H +A A+ N + L GKQ+ K
Sbjct: 215 GPAL--SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE---LNGKQIYVGRAQK 268
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE-DTSGHF--------------NIFVGDLSPEVT 46
A+ +NG+ L G+ I V A +R+ + F N++V +L +
Sbjct: 247 AVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L FS + + + A+VM + GRS+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 364
Query: 107 CNWATKGAGNNEDKQS 122
A + E++Q+
Sbjct: 365 VALAQR----KEERQA 376
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 209
++YVG+L P+ T+ L+ F AG I +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + GK ++ W +
Sbjct: 70 ---DTMNFDVIKGKPVRIMWSQR 89
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 30/205 (14%)
Query: 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 88
D G ++VG++ + + L + + A VM+D+ +GRSR FGFV+ + +DA
Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138
Query: 89 QSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAP 148
+ I L +G R+I+ N K +E + ++ +++ E+P
Sbjct: 139 NAVIEKLNDTEIGGRKIKVNITEKP---------------LEGMDIATTQAEDSQFVESP 183
Query: 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHS-----LGAGVIEEVRVQRDKGFGFVRYSTHA 203
VY+GNLA VT +L + F S LGA V + GFGFV +S+
Sbjct: 184 ------YKVYIGNLAKTVTN-ELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEE 236
Query: 204 EAALAIQMGNTTQSSYLFGKQMKCS 228
E AIQ N +S L G++++ +
Sbjct: 237 EVEAAIQALN---NSVLEGQKIRVN 258
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 2 AILSLNGRHLFGQPIKVNWA--------YASGQREDT---SGHFNIFVGDLSPEVTDATL 50
I LN + G+ IKVN A+ Q ED+ + +++G+L+ VT+ L
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELL 200
Query: 51 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110
FS A+V T +S GFGFVSF ++++ ++AI L L ++IR N A
Sbjct: 201 KDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS 61
AI LN L+G+PIKVN A A + D NIFVG+L PEV + L+ FS +
Sbjct: 70 AIKILNMIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 62 DA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112
++M D +G S+GF F++F + + + +A+ + G++L +R I ++A K
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 44/203 (21%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
I+VG L +V+++ L+ + D+ T +GFGFV F ++DA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
L + I+ N A+ N + N
Sbjct: 75 NMIKLYGKPIKVNKAS----------------------------AHEKNMDVGAN----- 101
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
++VGNL PEV + L+ F + G +++ ++ RD KGF F+ +++ + A+
Sbjct: 102 -IFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+ N +L + + S+ K
Sbjct: 160 EAMN---GQFLCNRAITVSYAFK 179
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 29/217 (13%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSG-----HFNIFVGDLSPEVTDATLFACFSV 56
AI ++NG L + + V + +RE G N+++ + ++ D L FS
Sbjct: 154 AIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSA 213
Query: 57 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116
+ + +VM D +GRSRGFGFV++ N ++AQ A++++ GK + R I A K
Sbjct: 214 FGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI-- 270
Query: 117 NEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 176
++QS EL + +E N Q +YV NL + L + F
Sbjct: 271 --ERQS-------ELKRKFEQIKQERINRY------QGVNLYVKNLDDGIDDDRLRKEF- 314
Query: 177 SLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAI 209
L G I +V + KGFGFV +S+ EA A+
Sbjct: 315 -LPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAV 350
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 2 AILSLNGRHLFGQPIKVNWAYAS-GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 60
A+ ++N + G+PI++ W+ G R+ SG N+F+ +L + + L+ FS + +
Sbjct: 68 ALDTMNFEVIKGRPIRIMWSQRDPGLRK--SGVGNVFIKNLDESIDNKALYDTFSAFGNI 125
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
+V+ D+ SRG+GFV F + A AI + G L R++ + E +
Sbjct: 126 LSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERE 180
Query: 121 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180
AK V+E TN VY+ N ++ L F + G
Sbjct: 181 LEYGAK-VMEFTN-----------------------VYIKNFGEDMDDKRLREIFSAFGN 216
Query: 181 GVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGN 213
+ +V + R +GFGFV Y H EA A+ N
Sbjct: 217 TLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
++++GDL P+VT+A L+ FS RV D T RS + +++F+ DA+ A++
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 95 LTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQY 154
+ + + R IR W+ + G KS V
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLR--------KSGV------------------------- 98
Query: 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQ 210
V++ NL + L+ F + G I +V D +G+GFV + TH A AIQ
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGN--ILSCKVVCDEHGSRGYGFVHFETHEAANRAIQ 156
Query: 211 MGN 213
N
Sbjct: 157 TMN 159
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPEVT 46
A+ +NG+ + G+ I V A +R+ N++V +L +
Sbjct: 247 AVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGID 306
Query: 47 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106
D L F Y + + A+VM + G S+GFGFV F + ++A A+ ++ G+ + ++ +
Sbjct: 307 DDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLY 364
Query: 107 CNWATK 112
A +
Sbjct: 365 VALAQR 370
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG------FGFVRYSTHAEAALAI 209
++Y+G+L P+VT+ L+ F AG I +RV RD + ++ + A+A A+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSP--AGPIMSIRVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+T + G+ ++ W +
Sbjct: 70 ---DTMNFEVIKGRPIRIMWSQR 89
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 8/115 (6%)
Query: 6 LNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNWATKGA 114
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKA 177
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWLG----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 149
+ GK L +++ + N+AT G + P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--------------------------------KQPD 91
Query: 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGFVRYSTHA 203
N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GFV+++
Sbjct: 92 NSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGFVKFTDEL 148
Query: 204 EAALAI 209
E A+
Sbjct: 149 EQKRAL 154
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 70/115 (60%), Gaps = 8/115 (6%)
Query: 6 LNGRHLFG----QPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPSC 60
+NG+ L G + K+N+A G++ D S +++FVGDL+P+V D L+ F VYPSC
Sbjct: 65 INGKPLPGATPAKRFKLNYA-TYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC 123
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNWATKGA 114
+V+ DQ TG S+G+GFV F ++ + + A+ + G LGS+ +R + A A
Sbjct: 124 RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 177
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 35 NIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 93
++++GDL P + + + F+ + +++ ++ TG G+ FV F + A+ ++
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 94 DLTGKWLG----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 149
+ GK L +++ + N+AT G + P+
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG--------------------------------KQPD 91
Query: 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSL------GAGVIEEVRVQRDKGFGFVRYSTHA 203
N+P+Y+ ++VG+L P+V L+ F + G V+++ V KG+GFV+++
Sbjct: 92 NSPEYS-LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS--KGYGFVKFTDEL 148
Query: 204 EAALAI 209
E A+
Sbjct: 149 EQKRAL 154
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 54/209 (25%)
Query: 17 KVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRG 76
K + G +ED + +++VG+L P VT+A LF F+ + RV D T RS G
Sbjct: 29 KTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLG 88
Query: 77 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK-------GAGNNEDKQSSDAKSVV 129
+ +V+F NQ D A+ +L + R R W+ + GAGN
Sbjct: 89 YAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDPALRKTGAGN------------- 135
Query: 130 ELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189
+Y+ NL P + LH F + G I ++
Sbjct: 136 ---------------------------IYIKNLDPAIDNKALHDTFSAFGQ--ILSCKIA 166
Query: 190 RD-----KGFGFVRYSTHAEAALAIQMGN 213
D +GFGFV Y + A AIQ N
Sbjct: 167 TDEFGNSRGFGFVHYESAESAESAIQHVN 195
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 38/214 (17%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYP 58
A+ LN + +P ++ W+ QR+ +G NI++ +L P + + L FS +
Sbjct: 103 ALEELNYSPIKERPCRIMWS----QRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFG 158
Query: 59 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNE 118
++ D+ G SRGFGFV + + + A+SAI + G L +++
Sbjct: 159 QILSCKIATDE-FGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHV------- 210
Query: 119 DKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSL 178
+S +S E N +T V++ NL E+T+ + +
Sbjct: 211 -PKSDRMQSFEEQKNS-------------------FTNVFIKNLGTEITEAEFEELVNKF 250
Query: 179 GAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
G + + GFGFV Y H A AI
Sbjct: 251 GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAI 284
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 23/210 (10%)
Query: 4 LSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA 63
+ LN + +F P E + N+F+ +L E+T+A + + S
Sbjct: 197 MLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSV 256
Query: 64 RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWATKGAGNNEDKQS 122
+ + + G+ GFGFV ++ A AI+ L+ ++ G++ K +E ++
Sbjct: 257 HLSTNDE-GKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQ 315
Query: 123 SDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 182
+A + +L N Q +Y+ NL + L F G
Sbjct: 316 YEASRLEKL------------------NKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTIT 357
Query: 183 IEEVRVQ---RDKGFGFVRYSTHAEAALAI 209
+V V + KGFGFV YS+ EA A+
Sbjct: 358 SAKVMVDEAGKSKGFGFVCYSSPEEATKAV 387
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94
N+++ +L + D L A F+ + + + A+VM D+ G+S+GFGFV + + ++A A+ +
Sbjct: 331 NLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDE-AGKSKGFGFVCYSSPEEATKAVTE 389
Query: 95 LTGKWLGSRQIRCNWATK 112
+ + + + + A +
Sbjct: 390 MNHRLVAGKPLYVVLAQR 407
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC- 60
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE 137
S A+ ++ N S+
Sbjct: 187 HGSAAERLLAAQNPLSQ 203
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 44/203 (21%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG L +V++ L+ F + + D+ TG+ +G+GFV F +++DA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
L + IR N K + +N++ L G++
Sbjct: 75 NMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------------------- 101
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+ N YL + + S+ K
Sbjct: 160 EAMN---GQYLCNRPITVSYAFK 179
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC- 60
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE 137
S A+ ++ N S+
Sbjct: 187 HGSAAERLLAAQNPLSQ 203
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 44/203 (21%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG L +V++ L+ F + + D+ TG+ +G+GFV F +++DA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
L + IR N K + +N++ L G++
Sbjct: 75 NMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------------------- 101
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+ N YL + + S+ K
Sbjct: 160 EAMN---GQYLCNRPITVSYAFK 179
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC- 60
AI +N L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS +
Sbjct: 70 AIKIMNMIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVIL 127
Query: 61 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 120
++M D TG S+G+ F++F + + +AI + G++L +R I ++A K E +
Sbjct: 128 QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGE-R 186
Query: 121 QSSDAKSVVELTNGSSE 137
S A+ ++ N S+
Sbjct: 187 HGSAAERLLAAQNPLSQ 203
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 44/203 (21%)
Query: 36 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95
++VG L +V++ L+ F + + D+ TG+ +G+GFV F +++DA AI +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 96 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 155
L + IR N K + +N++ L G++
Sbjct: 75 NMIKLYGKPIRVN---KASAHNKN-----------LDVGAN------------------- 101
Query: 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 209
+++GNL PE+ + L+ F + G +++ ++ RD KG+ F+ +++ + AI
Sbjct: 102 -IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 210 QMGNTTQSSYLFGKQMKCSWGSK 232
+ N YL + + S+ K
Sbjct: 160 EAMN---GQYLCNRPITVSYAFK 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,579,579
Number of Sequences: 539616
Number of extensions: 5310281
Number of successful extensions: 26485
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 23976
Number of HSP's gapped (non-prelim): 2241
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)