Query 020857
Match_columns 320
No_of_seqs 240 out of 2231
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:12:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.4E-37 8.1E-42 260.9 18.3 166 30-233 12-181 (213)
2 3smz_A Protein raver-1, ribonu 100.0 5.3E-36 1.8E-40 263.6 21.0 186 2-233 73-264 (284)
3 3md3_A Nuclear and cytoplasmic 100.0 1.9E-35 6.6E-40 238.9 20.0 160 34-232 1-166 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 2.4E-35 8.1E-40 239.0 20.2 159 32-230 2-168 (168)
5 2qfj_A FBP-interacting repress 100.0 3.9E-36 1.3E-40 253.7 15.7 176 30-234 25-206 (216)
6 1fxl_A Paraneoplastic encephal 100.0 4.8E-35 1.6E-39 236.8 20.2 158 33-230 2-167 (167)
7 1l3k_A Heterogeneous nuclear r 100.0 4.6E-35 1.6E-39 243.4 19.8 172 28-235 8-185 (196)
8 3nmr_A Cugbp ELAV-like family 100.0 9.6E-35 3.3E-39 236.9 19.8 161 32-231 2-175 (175)
9 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-34 4.9E-39 255.5 19.5 186 2-233 97-291 (292)
10 3pgw_A U1-A; protein-RNA compl 100.0 9.4E-34 3.2E-38 249.0 24.2 196 29-232 5-282 (282)
11 2adc_A Polypyrimidine tract-bi 100.0 1.1E-33 3.9E-38 241.0 22.5 196 29-233 30-228 (229)
12 2cjk_A Nuclear polyadenylated 100.0 6.1E-35 2.1E-39 236.5 12.5 159 32-233 2-166 (167)
13 1qm9_A Polypyrimidine tract-bi 100.0 1.6E-33 5.6E-38 234.6 19.8 192 33-233 3-197 (198)
14 3tyt_A Heterogeneous nuclear r 100.0 3.7E-33 1.3E-37 233.2 18.7 189 32-230 3-204 (205)
15 1fje_B Nucleolin RBD12, protei 100.0 3.7E-34 1.2E-38 233.8 12.2 165 29-233 9-174 (175)
16 2yh0_A Splicing factor U2AF 65 100.0 7.9E-34 2.7E-38 236.3 14.1 177 32-235 3-196 (198)
17 2g4b_A Splicing factor U2AF 65 100.0 2.7E-32 9.2E-37 221.9 17.1 153 32-231 3-172 (172)
18 3sde_A Paraspeckle component 1 100.0 8.8E-31 3E-35 227.4 19.0 153 29-233 18-179 (261)
19 3smz_A Protein raver-1, ribonu 100.0 2.9E-30 9.9E-35 226.9 20.4 151 31-234 20-176 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-30 1.1E-34 227.4 18.4 158 29-235 37-199 (292)
21 4f25_A Polyadenylate-binding p 99.9 6.3E-25 2.1E-29 166.4 10.8 110 32-170 4-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.9 2.1E-23 7.2E-28 153.4 11.1 82 31-112 17-98 (99)
23 2kn4_A Immunoglobulin G-bindin 99.9 5.4E-23 1.9E-27 164.7 14.5 145 62-235 2-152 (158)
24 2i2y_A Fusion protein consists 99.9 5.2E-23 1.8E-27 163.4 12.4 138 71-233 9-148 (150)
25 3md3_A Nuclear and cytoplasmic 99.9 3.7E-22 1.3E-26 160.6 13.6 110 2-112 57-166 (166)
26 2lxi_A RNA-binding protein 10; 99.9 3.8E-23 1.3E-27 149.7 6.9 84 33-116 1-86 (91)
27 3s8s_A Histone-lysine N-methyl 99.9 3.4E-22 1.2E-26 149.7 11.8 83 31-113 4-86 (110)
28 2dgo_A Cytotoxic granule-assoc 99.9 2.3E-21 8E-26 146.7 14.5 94 24-117 6-99 (115)
29 2cq0_A Eukaryotic translation 99.9 2E-21 6.7E-26 144.1 12.7 90 26-115 8-97 (103)
30 2lkz_A RNA-binding protein 5; 99.9 3E-22 1E-26 145.7 7.9 81 32-112 8-94 (95)
31 2g4b_A Splicing factor U2AF 65 99.9 1.2E-21 4.2E-26 158.7 11.9 106 2-111 67-172 (172)
32 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.5E-21 5.2E-26 140.1 11.0 83 31-113 4-86 (87)
33 2jwn_A Embryonic polyadenylate 99.9 2.6E-22 8.8E-27 154.1 7.1 112 2-114 5-116 (124)
34 2qfj_A FBP-interacting repress 99.9 1.5E-21 5.2E-26 164.1 12.1 114 2-115 86-207 (216)
35 3md1_A Nuclear and cytoplasmic 99.9 3.2E-21 1.1E-25 137.1 11.9 82 33-114 1-82 (83)
36 2cqc_A Arginine/serine-rich sp 99.9 2.5E-21 8.5E-26 141.3 11.6 89 24-112 6-94 (95)
37 1b7f_A Protein (SXL-lethal pro 99.9 2E-21 6.9E-26 156.7 12.2 106 2-110 61-168 (168)
38 2yh0_A Splicing factor U2AF 65 99.9 2.4E-21 8.3E-26 160.6 12.8 112 2-114 67-195 (198)
39 1whw_A Hypothetical protein ri 99.9 3.5E-21 1.2E-25 141.7 12.2 87 29-115 4-90 (99)
40 2i2y_A Fusion protein consists 99.9 7.6E-22 2.6E-26 156.6 9.0 107 2-114 29-149 (150)
41 2dnz_A Probable RNA-binding pr 99.9 4.7E-21 1.6E-25 139.8 12.3 85 31-115 3-87 (95)
42 2cpz_A CUG triplet repeat RNA- 99.9 5E-21 1.7E-25 144.8 12.3 88 28-115 20-107 (115)
43 1x5u_A Splicing factor 3B subu 99.9 4.8E-21 1.6E-25 142.5 11.9 90 27-116 9-98 (105)
44 2dgs_A DAZ-associated protein 99.9 6.3E-21 2.1E-25 140.3 12.4 87 29-116 6-92 (99)
45 2do4_A Squamous cell carcinoma 99.9 7.2E-21 2.5E-25 140.3 12.7 86 28-114 12-97 (100)
46 1x5t_A Splicing factor 3B subu 99.9 3.3E-21 1.1E-25 141.0 10.7 86 31-116 3-89 (96)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.1E-21 1.1E-25 137.8 10.4 82 30-111 4-85 (85)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.9 4.1E-21 1.4E-25 142.1 11.2 89 28-116 7-95 (102)
49 2khc_A Testis-specific RNP-typ 99.9 2.8E-21 9.5E-26 147.0 10.5 86 26-111 33-118 (118)
50 2x1f_A MRNA 3'-END-processing 99.9 4.1E-21 1.4E-25 140.5 10.9 83 32-114 1-83 (96)
51 3p5t_L Cleavage and polyadenyl 99.9 7.1E-22 2.4E-26 142.7 6.6 82 34-115 2-85 (90)
52 2dnm_A SRP46 splicing factor; 99.9 4.4E-21 1.5E-25 142.2 10.9 88 28-115 8-95 (103)
53 2jrs_A RNA-binding protein 39; 99.9 6E-21 2E-25 142.6 11.6 87 28-114 21-107 (108)
54 2d9p_A Polyadenylate-binding p 99.9 8.8E-21 3E-25 140.6 12.5 91 24-116 6-96 (103)
55 1p27_B RNA-binding protein 8A; 99.9 5.4E-21 1.9E-25 142.5 11.4 86 29-114 19-104 (106)
56 1x5s_A Cold-inducible RNA-bind 99.8 4.4E-21 1.5E-25 141.9 10.7 89 28-116 7-95 (102)
57 1x4h_A RNA-binding protein 28; 99.8 8.3E-21 2.9E-25 142.7 12.3 90 27-116 9-104 (111)
58 2e5h_A Zinc finger CCHC-type a 99.8 7.6E-21 2.6E-25 138.5 11.7 84 28-111 11-94 (94)
59 1fxl_A Paraneoplastic encephal 99.8 4.3E-21 1.5E-25 154.5 11.3 106 2-110 60-167 (167)
60 3ns6_A Eukaryotic translation 99.8 1.5E-21 5.1E-26 143.9 7.8 84 30-113 3-93 (100)
61 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-20 3.9E-25 140.5 12.6 88 28-116 10-100 (105)
62 2cph_A RNA binding motif prote 99.8 9.6E-21 3.3E-25 141.4 12.2 89 27-115 9-99 (107)
63 2dng_A Eukaryotic translation 99.8 1.6E-20 5.4E-25 139.2 13.1 87 27-115 9-95 (103)
64 3lqv_A PRE-mRNA branch site pr 99.8 3.7E-21 1.3E-25 145.6 9.6 105 29-179 4-108 (115)
65 2dgp_A Bruno-like 4, RNA bindi 99.8 7.5E-21 2.6E-25 141.7 11.0 89 27-115 7-98 (106)
66 2cpf_A RNA binding motif prote 99.8 7.5E-21 2.6E-25 139.6 10.8 86 31-116 3-91 (98)
67 2kt5_A RNA and export factor-b 99.8 1.6E-20 5.4E-25 144.0 13.0 110 5-115 4-116 (124)
68 2la6_A RNA-binding protein FUS 99.8 1.4E-20 4.9E-25 138.4 11.6 84 28-111 8-99 (99)
69 2fy1_A RNA-binding motif prote 99.8 1.4E-20 4.7E-25 142.5 11.8 85 30-115 4-88 (116)
70 1wi8_A EIF-4B, eukaryotic tran 99.8 1.9E-20 6.5E-25 139.0 12.3 86 28-115 10-96 (104)
71 2kxn_B Transformer-2 protein h 99.8 7.1E-21 2.4E-25 146.7 10.3 88 27-114 40-127 (129)
72 2cqd_A RNA-binding region cont 99.8 1.6E-20 5.6E-25 142.2 12.1 89 27-116 11-99 (116)
73 2div_A TRNA selenocysteine ass 99.8 9.2E-21 3.1E-25 139.4 10.3 85 30-114 6-95 (99)
74 2lea_A Serine/arginine-rich sp 99.8 3.1E-21 1.1E-25 150.0 8.1 111 2-116 20-130 (135)
75 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-20 4.6E-25 141.3 11.3 86 29-114 22-107 (110)
76 2hvz_A Splicing factor, argini 99.8 3.8E-21 1.3E-25 142.1 8.1 76 34-114 1-76 (101)
77 2cpe_A RNA-binding protein EWS 99.8 1.9E-20 6.5E-25 141.2 12.0 88 28-115 10-105 (113)
78 4f02_A Polyadenylate-binding p 99.8 4.6E-21 1.6E-25 161.1 9.3 109 2-113 73-181 (213)
79 2cq3_A RNA-binding protein 9; 99.8 5.6E-20 1.9E-24 136.2 14.0 89 26-116 8-96 (103)
80 2dhg_A TRNA selenocysteine ass 99.8 1.3E-20 4.6E-25 139.8 10.5 87 28-115 4-92 (104)
81 2do0_A HnRNP M, heterogeneous 99.8 6.1E-20 2.1E-24 138.6 14.2 87 27-114 9-95 (114)
82 2ywk_A Putative RNA-binding pr 99.8 1.4E-20 4.9E-25 137.3 10.2 84 28-112 11-94 (95)
83 2cqp_A RNA-binding protein 12; 99.8 1.6E-20 5.5E-25 137.8 10.4 85 29-113 11-95 (98)
84 3s7r_A Heterogeneous nuclear r 99.8 2.1E-20 7.2E-25 134.1 10.7 82 28-110 6-87 (87)
85 2cqg_A TDP-43, TAR DNA-binding 99.8 5.6E-20 1.9E-24 136.2 13.0 90 25-116 7-96 (103)
86 1u6f_A Tcubp1, RNA-binding pro 99.8 2.9E-20 9.9E-25 145.5 12.0 88 29-116 38-125 (139)
87 1p1t_A Cleavage stimulation fa 99.8 6.3E-21 2.1E-25 141.6 7.7 86 30-115 5-90 (104)
88 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-20 1.7E-24 136.5 12.5 87 27-115 9-95 (103)
89 2dh8_A DAZ-associated protein 99.8 1.5E-20 5.2E-25 139.8 9.7 89 27-116 10-98 (105)
90 3ulh_A THO complex subunit 4; 99.8 3.5E-20 1.2E-24 138.3 11.6 83 28-111 24-106 (107)
91 1l3k_A Heterogeneous nuclear r 99.8 2.5E-20 8.7E-25 154.2 11.8 114 2-117 71-187 (196)
92 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-20 5.6E-25 137.9 9.4 82 29-116 12-95 (105)
93 2m2b_A RNA-binding protein 10; 99.8 8.4E-21 2.9E-25 147.0 8.3 87 28-115 18-110 (131)
94 1s79_A Lupus LA protein; RRM, 99.8 1.3E-20 4.6E-25 139.2 9.0 82 29-112 7-88 (103)
95 1fje_B Nucleolin RBD12, protei 99.8 2E-20 6.9E-25 152.0 10.9 105 2-113 70-174 (175)
96 2rs2_A Musashi-1, RNA-binding 99.8 2.7E-20 9.2E-25 139.3 10.6 87 28-115 20-106 (109)
97 2kn4_A Immunoglobulin G-bindin 99.8 1.7E-20 5.9E-25 150.0 10.3 87 29-115 66-152 (158)
98 3n9u_C Cleavage and polyadenyl 99.8 1.9E-20 6.4E-25 149.0 10.3 82 32-113 54-137 (156)
99 3ucg_A Polyadenylate-binding p 99.8 2.4E-20 8.1E-25 134.4 10.0 81 32-113 5-85 (89)
100 4a8x_A RNA-binding protein wit 99.8 2.6E-20 8.8E-25 133.9 9.9 83 32-114 3-86 (88)
101 1x4e_A RNA binding motif, sing 99.8 5.5E-21 1.9E-25 136.5 6.1 82 30-111 2-83 (85)
102 2cq1_A PTB-like protein L; RRM 99.8 8.5E-20 2.9E-24 134.1 12.6 87 24-116 6-94 (101)
103 2dgv_A HnRNP M, heterogeneous 99.8 3.9E-20 1.3E-24 134.1 10.7 84 30-115 5-88 (92)
104 2ek1_A RNA-binding protein 12; 99.8 1.6E-20 5.4E-25 137.0 8.3 83 30-112 12-94 (95)
105 2err_A Ataxin-2-binding protei 99.8 4E-20 1.4E-24 138.4 10.5 88 24-113 20-107 (109)
106 3ex7_B RNA-binding protein 8A; 99.8 4.9E-20 1.7E-24 141.7 10.9 89 28-116 17-105 (126)
107 2dgw_A Probable RNA-binding pr 99.8 1E-19 3.5E-24 131.6 11.9 83 29-114 6-88 (91)
108 2dgx_A KIAA0430 protein; RRM d 99.8 7.8E-20 2.7E-24 133.6 11.3 83 30-115 6-92 (96)
109 1wf1_A RNA-binding protein RAL 99.8 6.1E-20 2.1E-24 137.7 10.8 97 11-115 5-102 (110)
110 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.7E-20 3E-24 145.6 12.3 87 29-115 35-121 (156)
111 2mss_A Protein (musashi1); RNA 99.8 1.7E-20 5.8E-25 130.6 6.9 75 35-110 1-75 (75)
112 2dis_A Unnamed protein product 99.8 6.5E-20 2.2E-24 137.3 10.4 87 30-116 5-95 (109)
113 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.1E-20 7.2E-25 137.7 7.3 84 28-113 14-98 (100)
114 2cpy_A RNA-binding protein 12; 99.8 4.1E-20 1.4E-24 139.5 9.1 86 27-114 9-95 (114)
115 2wbr_A GW182, gawky, LD47780P; 99.8 4.4E-20 1.5E-24 129.5 8.4 73 33-111 7-79 (89)
116 1x4d_A Matrin 3; structural ge 99.8 6.4E-20 2.2E-24 134.7 9.6 83 27-115 9-94 (102)
117 1x5o_A RNA binding motif, sing 99.8 1.4E-19 4.9E-24 136.6 11.7 85 28-113 20-112 (114)
118 1wex_A Hypothetical protein (r 99.8 1.4E-19 4.8E-24 133.7 11.4 85 25-115 7-93 (104)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1E-19 3.5E-24 146.6 11.5 86 30-115 69-154 (165)
120 3nmr_A Cugbp ELAV-like family 99.8 1.1E-19 3.6E-24 147.5 11.8 107 2-111 63-175 (175)
121 1x4b_A Heterogeneous nuclear r 99.8 5E-20 1.7E-24 139.5 9.1 86 30-116 24-109 (116)
122 3r27_A HnRNP L, heterogeneous 99.8 8.8E-20 3E-24 132.7 9.9 81 28-114 16-98 (100)
123 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-20 8.4E-25 130.5 6.5 76 34-110 1-76 (77)
124 2ad9_A Polypyrimidine tract-bi 99.8 1.5E-19 5.1E-24 136.1 11.3 83 28-116 26-110 (119)
125 1wez_A HnRNP H', FTP-3, hetero 99.8 6.8E-20 2.3E-24 135.3 9.1 84 29-115 11-94 (102)
126 2cpi_A CCR4-NOT transcription 99.8 8.8E-20 3E-24 137.0 9.9 86 29-114 11-102 (111)
127 1wg5_A Heterogeneous nuclear r 99.8 1.6E-19 5.3E-24 134.0 10.8 85 28-114 10-95 (104)
128 1x4a_A Splicing factor, argini 99.8 3.2E-19 1.1E-23 133.5 12.5 85 28-115 17-101 (109)
129 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-19 5.3E-24 132.7 10.5 79 153-236 15-95 (105)
130 2fc9_A NCL protein; structure 99.8 2.6E-19 8.9E-24 132.1 11.7 85 27-115 9-93 (101)
131 2cq4_A RNA binding motif prote 99.8 4.7E-20 1.6E-24 139.3 7.8 82 31-113 23-104 (114)
132 2ki2_A SS-DNA binding protein 99.8 1.6E-20 5.4E-25 135.6 4.6 81 34-115 2-82 (90)
133 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.5E-19 5.2E-24 141.5 10.6 83 28-110 58-140 (140)
134 2db1_A Heterogeneous nuclear r 99.8 1E-19 3.6E-24 138.1 9.3 83 29-113 13-98 (118)
135 3tyt_A Heterogeneous nuclear r 99.8 8.4E-20 2.9E-24 152.2 9.3 107 2-110 58-204 (205)
136 2hgl_A HNRPF protein, heteroge 99.8 8.1E-20 2.8E-24 141.5 8.4 84 28-113 39-125 (136)
137 2fc8_A NCL protein; structure 99.8 3.6E-19 1.2E-23 131.5 11.6 86 27-115 9-94 (102)
138 3r27_A HnRNP L, heterogeneous 99.8 2.7E-19 9.1E-24 130.1 10.3 80 150-234 17-98 (100)
139 2nlw_A Eukaryotic translation 99.8 1.7E-19 5.7E-24 134.1 9.5 84 29-114 11-101 (105)
140 2cjk_A Nuclear polyadenylated 99.8 2.7E-20 9.2E-25 150.0 5.1 102 8-113 65-166 (167)
141 2dnn_A RNA-binding protein 12; 99.8 2.3E-19 7.7E-24 133.7 9.6 80 30-112 13-92 (109)
142 1wel_A RNA-binding protein 12; 99.8 6.5E-20 2.2E-24 140.6 6.6 84 29-113 21-104 (124)
143 2a3j_A U1 small nuclear ribonu 99.8 2.4E-19 8.3E-24 137.3 9.7 83 29-114 25-111 (127)
144 2dnq_A RNA-binding protein 4B; 99.8 7.4E-19 2.5E-23 126.8 11.8 80 29-116 4-83 (90)
145 3pgw_A U1-A; protein-RNA compl 99.8 4.1E-19 1.4E-23 155.5 12.4 75 32-111 206-281 (282)
146 1x4c_A Splicing factor, argini 99.8 1.1E-18 3.6E-23 130.4 12.7 82 28-116 10-96 (108)
147 1x4f_A Matrin 3; structural ge 99.8 3.8E-19 1.3E-23 132.4 10.2 83 28-116 20-105 (112)
148 1x4d_A Matrin 3; structural ge 99.8 5.1E-19 1.7E-23 129.9 10.2 79 153-234 14-93 (102)
149 2cpj_A Non-POU domain-containi 99.8 6.9E-19 2.4E-23 129.3 10.7 83 27-115 9-91 (99)
150 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-20 1.1E-24 137.0 3.4 85 29-115 13-97 (101)
151 1why_A Hypothetical protein ri 99.8 8.8E-19 3E-23 128.2 11.1 80 29-114 13-94 (97)
152 1wex_A Hypothetical protein (r 99.8 1.5E-18 5.1E-23 128.2 12.3 83 150-235 11-93 (104)
153 2krb_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 128.2 6.0 73 33-107 1-80 (81)
154 2ytc_A PRE-mRNA-splicing facto 99.8 8.1E-19 2.8E-23 125.1 10.3 78 28-111 7-85 (85)
155 4fxv_A ELAV-like protein 1; RN 99.8 5.2E-19 1.8E-23 129.8 9.5 74 154-232 19-98 (99)
156 2jvr_A Nucleolar protein 3; RN 99.8 3.6E-19 1.2E-23 132.9 8.7 80 30-113 25-105 (111)
157 2lmi_A GRSF-1, G-rich sequence 99.8 1.3E-19 4.4E-24 135.2 6.0 84 28-113 6-92 (107)
158 1iqt_A AUF1, heterogeneous nuc 99.8 9.4E-20 3.2E-24 126.8 4.9 75 35-110 1-75 (75)
159 2cpx_A Hypothetical protein FL 99.8 1.9E-19 6.6E-24 136.1 6.7 87 29-115 21-107 (115)
160 1nu4_A U1A RNA binding domain; 99.8 3.7E-19 1.3E-23 130.3 8.0 83 29-114 4-90 (97)
161 3q2s_C Cleavage and polyadenyl 99.8 2.6E-19 9E-24 151.5 8.3 82 32-113 67-150 (229)
162 1qm9_A Polypyrimidine tract-bi 99.8 7.3E-19 2.5E-23 145.8 10.8 107 2-113 57-197 (198)
163 2cq1_A PTB-like protein L; RRM 99.8 2.9E-18 1E-22 125.9 12.7 80 152-236 13-94 (101)
164 2la4_A Nuclear and cytoplasmic 99.8 6E-19 2E-23 130.1 9.1 78 29-112 23-100 (101)
165 2jvo_A Nucleolar protein 3; nu 99.8 1.1E-18 3.9E-23 130.1 10.5 79 28-114 26-104 (108)
166 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-18 4E-23 130.4 10.6 81 29-115 21-101 (109)
167 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-18 3.7E-23 122.4 9.5 73 154-231 7-79 (89)
168 2adc_A Polypyrimidine tract-bi 99.8 1.5E-18 5E-23 147.4 12.4 107 2-113 88-228 (229)
169 2xs2_A Deleted in azoospermia- 99.8 2.5E-19 8.7E-24 132.4 6.5 84 29-115 5-88 (102)
170 2dgt_A RNA-binding protein 30; 99.8 3.4E-18 1.2E-22 123.8 12.3 80 28-115 5-84 (92)
171 2lcw_A RNA-binding protein FUS 99.6 1.8E-20 6.1E-25 142.0 0.0 87 29-115 3-97 (116)
172 1fjc_A Nucleolin RBD2, protein 99.8 7E-19 2.4E-23 128.5 8.2 83 28-115 11-93 (96)
173 2dgu_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 127.0 11.5 81 29-117 7-87 (103)
174 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-18 5.6E-23 130.4 10.3 80 152-236 29-110 (119)
175 2xnq_A Nuclear polyadenylated 99.8 2.4E-18 8.3E-23 125.8 11.0 78 28-113 17-95 (97)
176 2e5j_A Methenyltetrahydrofolat 99.8 1.5E-18 5.2E-23 127.0 9.9 81 29-114 15-95 (97)
177 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-17 3.6E-22 126.4 14.6 82 151-237 12-99 (115)
178 3sde_A Paraspeckle component 1 99.8 1.5E-18 5.1E-23 150.3 11.1 102 2-113 74-179 (261)
179 2dnp_A RNA-binding protein 14; 99.8 3.1E-18 1E-22 123.5 10.8 79 29-115 5-83 (90)
180 2dha_A FLJ20171 protein; RRM d 99.8 5.2E-19 1.8E-23 134.5 6.8 80 31-112 21-104 (123)
181 2do0_A HnRNP M, heterogeneous 99.8 9.6E-18 3.3E-22 126.4 13.8 83 151-238 12-99 (114)
182 2hgn_A Heterogeneous nuclear r 99.8 3.2E-19 1.1E-23 138.6 5.1 84 29-115 42-125 (139)
183 2kvi_A Nuclear polyadenylated 99.8 2.2E-18 7.4E-23 125.9 9.1 79 29-115 6-85 (96)
184 1x4f_A Matrin 3; structural ge 99.8 4.4E-18 1.5E-22 126.7 10.8 80 151-235 22-104 (112)
185 2cpd_A Apobec-1 stimulating pr 99.8 9.4E-18 3.2E-22 123.2 12.5 80 28-115 10-91 (99)
186 2f3j_A RNA and export factor b 99.8 2.6E-18 8.8E-23 139.6 10.3 83 30-113 85-167 (177)
187 1why_A Hypothetical protein ri 99.8 8.5E-18 2.9E-22 122.9 12.1 78 152-234 15-94 (97)
188 1whx_A Hypothetical protein ri 99.8 2.2E-18 7.5E-23 129.3 9.1 78 31-114 8-85 (111)
189 2hgm_A HNRPF protein, heteroge 99.8 9.7E-19 3.3E-23 133.4 7.1 82 29-113 38-121 (126)
190 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-18 1.3E-22 121.5 9.8 77 150-231 8-85 (85)
191 2cpj_A Non-POU domain-containi 99.8 5.8E-18 2E-22 124.3 11.0 80 151-235 12-91 (99)
192 2cqh_A IGF-II mRNA-binding pro 99.8 3.3E-18 1.1E-22 124.1 9.1 79 30-115 5-85 (93)
193 2j8a_A Histone-lysine N-methyl 99.8 1.8E-18 6.2E-23 129.4 7.7 78 34-111 3-94 (136)
194 2lea_A Serine/arginine-rich sp 99.8 1.7E-18 5.8E-23 134.5 7.8 119 77-236 6-130 (135)
195 1x5p_A Negative elongation fac 99.7 1.5E-17 5.1E-22 121.6 12.4 80 28-115 10-89 (97)
196 1x4a_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 122.6 14.1 80 151-235 19-101 (109)
197 1x4g_A Nucleolysin TIAR; struc 99.7 1.3E-17 4.3E-22 124.8 11.9 78 153-235 24-101 (109)
198 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.2E-17 7.5E-22 122.1 13.1 81 151-236 12-96 (103)
199 2cq3_A RNA-binding protein 9; 99.7 2.8E-17 9.6E-22 121.6 13.5 81 150-235 11-95 (103)
200 1wg1_A KIAA1579 protein, homol 99.7 6.3E-18 2.2E-22 121.3 9.6 76 31-113 3-78 (88)
201 2lkz_A RNA-binding protein 5; 99.7 2.4E-18 8.1E-23 125.0 7.4 78 155-232 10-94 (95)
202 2dnq_A RNA-binding protein 4B; 99.7 2.2E-17 7.5E-22 119.0 12.3 77 152-235 6-82 (90)
203 2e44_A Insulin-like growth fac 99.7 5.4E-18 1.8E-22 123.8 9.1 80 30-113 12-92 (96)
204 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4E-22 121.4 10.6 78 31-114 6-83 (94)
205 1whw_A Hypothetical protein ri 99.7 2.7E-17 9.2E-22 120.7 12.7 79 153-236 7-91 (99)
206 2cq2_A Hypothetical protein LO 99.7 5.3E-18 1.8E-22 126.3 8.9 80 29-114 21-107 (114)
207 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-17 5.2E-22 121.3 11.2 77 153-234 8-91 (96)
208 1sjr_A Polypyrimidine tract-bi 99.7 8.5E-18 2.9E-22 132.9 10.5 82 29-114 42-125 (164)
209 3egn_A RNA-binding protein 40; 99.7 1.4E-18 4.7E-23 136.6 5.8 86 29-114 41-131 (143)
210 1x4c_A Splicing factor, argini 99.7 4.9E-17 1.7E-21 121.3 13.7 78 152-235 13-95 (108)
211 2cph_A RNA binding motif prote 99.7 2.8E-17 9.6E-22 122.4 12.4 80 151-235 12-99 (107)
212 3s8s_A Histone-lysine N-methyl 99.7 9.9E-18 3.4E-22 125.3 9.9 76 153-233 5-86 (110)
213 2dnz_A Probable RNA-binding pr 99.7 2.8E-17 9.7E-22 119.6 12.1 80 153-237 4-89 (95)
214 4f25_A Polyadenylate-binding p 99.7 9.4E-18 3.2E-22 126.7 9.8 75 155-234 6-84 (115)
215 3zzy_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 126.2 11.4 82 28-114 23-107 (130)
216 2la4_A Nuclear and cytoplasmic 99.7 6.5E-18 2.2E-22 124.5 8.5 76 153-233 26-101 (101)
217 2dgu_A Heterogeneous nuclear r 99.7 4.4E-17 1.5E-21 120.5 12.9 78 152-236 9-86 (103)
218 2e5i_A Heterogeneous nuclear r 99.7 2.2E-17 7.6E-22 125.2 11.4 78 31-114 23-103 (124)
219 2dgs_A DAZ-associated protein 99.7 4.3E-17 1.5E-21 119.6 12.6 78 152-235 8-91 (99)
220 2cpz_A CUG triplet repeat RNA- 99.7 3.1E-17 1E-21 123.9 12.0 82 149-235 20-107 (115)
221 2cpf_A RNA binding motif prote 99.7 1.8E-17 6E-22 121.5 10.4 78 154-236 5-91 (98)
222 2diu_A KIAA0430 protein; struc 99.7 2.5E-17 8.6E-22 116.5 10.4 76 33-118 8-89 (96)
223 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.2E-17 4.2E-22 134.3 10.1 136 80-235 11-154 (165)
224 2dnh_A Bruno-like 5, RNA bindi 99.7 4.2E-17 1.4E-21 121.0 12.0 80 152-236 13-100 (105)
225 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.8E-17 6.3E-22 122.3 9.9 80 152-236 10-95 (102)
226 1whx_A Hypothetical protein ri 99.7 2E-17 6.8E-22 124.0 10.2 77 153-234 9-85 (111)
227 2cq0_A Eukaryotic translation 99.7 3.4E-17 1.2E-21 121.1 11.3 80 152-236 13-98 (103)
228 2dnl_A Cytoplasmic polyadenyla 99.7 1.9E-17 6.6E-22 124.8 10.0 78 30-110 5-85 (114)
229 2dgt_A RNA-binding protein 30; 99.7 5.6E-17 1.9E-21 117.4 12.0 78 151-235 7-84 (92)
230 2do4_A Squamous cell carcinoma 99.7 4.8E-17 1.6E-21 119.6 11.8 79 152-235 15-98 (100)
231 2d9p_A Polyadenylate-binding p 99.7 3.4E-17 1.2E-21 121.1 11.0 79 153-236 14-96 (103)
232 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-17 1.1E-21 120.9 10.9 80 152-236 10-95 (102)
233 3md1_A Nuclear and cytoplasmic 99.7 3E-17 1E-21 116.4 10.1 74 155-233 2-81 (83)
234 3d2w_A TAR DNA-binding protein 99.7 1.8E-17 6.3E-22 119.0 9.1 77 29-114 7-85 (89)
235 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-17 6.3E-22 136.5 10.3 105 7-113 77-187 (193)
236 1x5u_A Splicing factor 3B subu 99.7 6.4E-17 2.2E-21 120.0 12.3 80 151-235 12-97 (105)
237 2dgv_A HnRNP M, heterogeneous 99.7 2.4E-17 8.4E-22 119.2 9.7 79 152-235 6-88 (92)
238 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.8E-17 9.6E-22 117.0 9.8 74 153-231 6-85 (85)
239 2dnm_A SRP46 splicing factor; 99.7 3.9E-17 1.3E-21 120.7 10.9 79 152-235 11-95 (103)
240 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.5E-17 8.5E-22 117.9 9.5 76 153-233 5-86 (87)
241 2e5h_A Zinc finger CCHC-type a 99.7 3.7E-17 1.3E-21 118.8 10.4 75 152-231 14-94 (94)
242 2cq2_A Hypothetical protein LO 99.7 3.8E-17 1.3E-21 121.6 10.6 76 153-233 24-106 (114)
243 2pe8_A Splicing factor 45; RRM 99.7 4.6E-17 1.6E-21 120.4 10.8 83 30-112 5-93 (105)
244 1x5t_A Splicing factor 3B subu 99.7 3E-17 1E-21 119.7 9.6 79 153-236 4-89 (96)
245 2dnp_A RNA-binding protein 14; 99.7 6E-17 2.1E-21 116.7 11.1 76 153-235 8-83 (90)
246 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4.1E-21 117.2 12.9 80 151-235 12-91 (99)
247 1x5p_A Negative elongation fac 99.7 1.3E-16 4.6E-21 116.5 13.0 77 152-235 13-89 (97)
248 2fy1_A RNA-binding motif prote 99.7 5.7E-17 2E-21 122.5 11.4 78 154-236 7-89 (116)
249 2x1f_A MRNA 3'-END-processing 99.7 4.3E-17 1.5E-21 119.0 10.3 76 154-234 2-83 (96)
250 2dgp_A Bruno-like 4, RNA bindi 99.7 6.5E-17 2.2E-21 120.2 11.4 80 151-235 10-98 (106)
251 2ywk_A Putative RNA-binding pr 99.7 3.3E-17 1.1E-21 119.3 9.6 78 150-232 12-94 (95)
252 2lxi_A RNA-binding protein 10; 99.7 8.7E-18 3E-22 121.3 6.4 76 155-234 2-84 (91)
253 2cqd_A RNA-binding region cont 99.7 1.9E-16 6.6E-21 119.6 14.1 81 149-235 12-98 (116)
254 2cqh_A IGF-II mRNA-binding pro 99.7 1.5E-17 5.1E-22 120.6 7.6 77 153-235 7-85 (93)
255 3pgw_S U1-70K; protein-RNA com 99.7 3.2E-17 1.1E-21 151.4 11.6 86 30-115 99-184 (437)
256 1p27_B RNA-binding protein 8A; 99.7 3.9E-17 1.3E-21 121.4 9.9 80 150-234 19-104 (106)
257 2cqc_A Arginine/serine-rich sp 99.7 5.4E-17 1.8E-21 118.1 10.4 78 150-232 11-94 (95)
258 1x4h_A RNA-binding protein 28; 99.7 1.1E-16 3.7E-21 120.0 12.3 80 151-235 12-103 (111)
259 2jrs_A RNA-binding protein 39; 99.7 8.3E-17 2.8E-21 120.0 11.4 82 148-234 20-107 (108)
260 3beg_B Splicing factor, argini 99.7 2.2E-17 7.5E-22 124.6 8.3 76 31-113 14-94 (115)
261 4a8x_A RNA-binding protein wit 99.7 6.1E-17 2.1E-21 116.1 10.2 75 155-234 5-86 (88)
262 1oo0_B CG8781-PA, drosophila Y 99.7 6.6E-17 2.3E-21 121.0 10.7 81 150-235 22-108 (110)
263 2err_A Ataxin-2-binding protei 99.7 3.3E-17 1.1E-21 122.4 8.9 80 149-233 24-107 (109)
264 2dhg_A TRNA selenocysteine ass 99.7 5.4E-17 1.8E-21 120.2 9.8 80 153-237 8-94 (104)
265 2bz2_A Negative elongation fac 99.7 5.6E-17 1.9E-21 123.3 10.1 80 28-115 34-113 (121)
266 2hzc_A Splicing factor U2AF 65 99.7 2.7E-17 9.3E-22 117.7 7.9 72 31-109 4-86 (87)
267 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.4E-21 117.1 11.0 76 151-233 19-95 (97)
268 2hvz_A Splicing factor, argini 99.7 5.2E-17 1.8E-21 119.6 9.6 76 155-235 1-77 (101)
269 2jvo_A Nucleolar protein 3; nu 99.7 6.2E-17 2.1E-21 120.6 10.0 77 151-234 28-104 (108)
270 2khc_A Testis-specific RNP-typ 99.7 9.4E-17 3.2E-21 121.7 11.1 78 149-231 35-118 (118)
271 2a3j_A U1 small nuclear ribonu 99.7 7.2E-17 2.4E-21 123.5 10.4 78 152-234 27-111 (127)
272 1wf0_A TDP-43, TAR DNA-binding 99.7 2.5E-17 8.7E-22 118.1 7.2 78 31-115 3-80 (88)
273 2div_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 118.9 9.2 78 153-235 8-96 (99)
274 1wf1_A RNA-binding protein RAL 99.7 1.6E-16 5.6E-21 118.8 11.8 76 153-235 26-102 (110)
275 2dis_A Unnamed protein product 99.7 1.7E-16 5.7E-21 118.6 11.8 78 153-235 7-94 (109)
276 2la6_A RNA-binding protein FUS 99.7 7.8E-17 2.7E-21 118.3 9.7 78 149-231 8-99 (99)
277 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-16 6.5E-21 115.7 11.7 79 152-234 17-95 (97)
278 2cpe_A RNA-binding protein EWS 99.7 1.5E-16 5.1E-21 119.7 11.4 80 151-235 12-105 (113)
279 2kxn_B Transformer-2 protein h 99.7 7E-17 2.4E-21 124.3 9.6 79 151-234 43-127 (129)
280 1u6f_A Tcubp1, RNA-binding pro 99.7 1.9E-16 6.5E-21 123.6 12.0 82 150-236 38-125 (139)
281 3ex7_B RNA-binding protein 8A; 99.7 1E-16 3.4E-21 123.1 10.2 82 149-235 17-104 (126)
282 1nu4_A U1A RNA binding domain; 99.7 9.1E-17 3.1E-21 117.4 9.3 78 152-234 6-90 (97)
283 3pgw_S U1-70K; protein-RNA com 99.7 2.1E-17 7.1E-22 152.6 6.5 77 153-234 101-183 (437)
284 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 114.8 9.1 75 154-234 6-86 (89)
285 2fc9_A NCL protein; structure 99.7 3.1E-16 1.1E-20 115.4 11.5 80 151-235 12-93 (101)
286 3p5t_L Cleavage and polyadenyl 99.7 2.1E-17 7.3E-22 119.1 5.0 77 155-234 2-84 (90)
287 3ulh_A THO complex subunit 4; 99.7 1.8E-16 6E-21 118.0 10.2 76 151-231 26-106 (107)
288 2kvi_A Nuclear polyadenylated 99.7 8.6E-17 3E-21 117.3 8.2 77 152-235 8-85 (96)
289 2e5i_A Heterogeneous nuclear r 99.7 8.6E-16 2.9E-20 116.5 13.7 75 155-234 26-103 (124)
290 2cpi_A CCR4-NOT transcription 99.7 1.4E-16 4.9E-21 119.3 9.3 76 154-234 15-102 (111)
291 2dng_A Eukaryotic translation 99.7 4.6E-16 1.6E-20 114.9 11.9 77 152-235 13-95 (103)
292 3ns6_A Eukaryotic translation 99.7 8.1E-17 2.8E-21 118.4 7.7 74 154-232 6-92 (100)
293 2dh8_A DAZ-associated protein 99.7 1.5E-16 5.2E-21 118.0 9.2 79 151-235 13-97 (105)
294 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-16 4.1E-21 119.2 8.4 76 154-233 28-105 (111)
295 2kt5_A RNA and export factor-b 99.7 1.1E-15 3.7E-20 116.9 13.8 78 152-234 33-115 (124)
296 1wi8_A EIF-4B, eukaryotic tran 99.7 8.3E-16 2.8E-20 113.8 12.3 78 152-236 13-97 (104)
297 1s79_A Lupus LA protein; RRM, 99.7 1.9E-16 6.4E-21 116.8 8.6 72 154-231 11-87 (103)
298 1p1t_A Cleavage stimulation fa 99.7 6E-17 2.1E-21 119.9 5.9 78 152-234 6-89 (104)
299 2cpx_A Hypothetical protein FL 99.7 8.5E-16 2.9E-20 115.9 12.4 80 152-236 23-108 (115)
300 2diu_A KIAA0430 protein; struc 99.7 7.4E-16 2.5E-20 109.0 10.8 73 155-236 10-87 (96)
301 2nlw_A Eukaryotic translation 99.7 3.9E-16 1.3E-20 115.7 9.7 75 154-233 15-100 (105)
302 2cqp_A RNA-binding protein 12; 99.7 1.6E-16 5.4E-21 116.4 7.4 77 152-233 13-95 (98)
303 2cq4_A RNA binding motif prote 99.7 7.2E-17 2.5E-21 121.6 5.6 76 152-233 23-104 (114)
304 2dit_A HIV TAT specific factor 99.7 1.5E-15 5.1E-20 113.9 12.6 85 27-115 9-104 (112)
305 3u1l_A PRE-mRNA-splicing facto 99.7 2.9E-16 9.9E-21 132.3 9.5 103 8-116 108-232 (240)
306 3lqv_A PRE-mRNA branch site pr 99.7 5.6E-16 1.9E-20 116.9 10.2 75 154-233 8-85 (115)
307 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.8E-16 2.3E-20 122.9 11.2 78 152-234 37-120 (156)
308 1x4e_A RNA binding motif, sing 99.7 6.5E-17 2.2E-21 115.2 4.7 75 153-232 4-84 (85)
309 2e5g_A U6 snRNA-specific termi 99.7 9.4E-16 3.2E-20 111.3 10.9 75 154-234 8-83 (94)
310 1x4b_A Heterogeneous nuclear r 99.7 4.9E-16 1.7E-20 117.4 9.7 78 152-235 25-108 (116)
311 1sjr_A Polypyrimidine tract-bi 99.7 5.9E-16 2E-20 122.3 10.5 76 154-234 46-125 (164)
312 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-15 3.4E-20 119.6 11.7 76 150-230 59-140 (140)
313 2rs2_A Musashi-1, RNA-binding 99.6 5.3E-16 1.8E-20 115.8 9.6 78 151-234 22-105 (109)
314 2m2b_A RNA-binding protein 10; 99.6 8.3E-16 2.8E-20 118.7 11.0 85 148-235 17-110 (131)
315 3zzy_A Polypyrimidine tract-bi 99.6 7E-16 2.4E-20 117.5 10.3 77 153-234 27-107 (130)
316 2cqg_A TDP-43, TAR DNA-binding 99.6 1.5E-15 5.2E-20 112.1 11.7 77 152-235 13-95 (103)
317 1x5o_A RNA binding motif, sing 99.6 1.3E-15 4.5E-20 114.6 11.4 77 152-233 23-112 (114)
318 3s7r_A Heterogeneous nuclear r 99.6 5.4E-16 1.8E-20 110.9 8.6 73 152-230 9-87 (87)
319 2jwn_A Embryonic polyadenylate 99.6 5E-16 1.7E-20 118.8 8.9 77 153-235 35-117 (124)
320 1fjc_A Nucleolin RBD2, protein 99.6 3.9E-16 1.3E-20 113.8 7.9 80 151-235 13-93 (96)
321 3n9u_C Cleavage and polyadenyl 99.6 6E-16 2.1E-20 122.9 9.5 77 153-232 54-136 (156)
322 2fc8_A NCL protein; structure 99.6 1.2E-15 4E-20 112.5 10.3 80 152-236 13-95 (102)
323 3beg_B Splicing factor, argini 99.6 6.8E-16 2.3E-20 116.4 9.1 75 153-233 15-94 (115)
324 1wg1_A KIAA1579 protein, homol 99.6 6.2E-16 2.1E-20 110.8 8.2 75 154-234 5-79 (88)
325 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-15 4.2E-20 112.2 9.9 79 153-235 16-97 (101)
326 2ek1_A RNA-binding protein 12; 99.6 1.8E-16 6.1E-21 115.3 5.3 75 153-232 14-94 (95)
327 2krb_A Eukaryotic translation 99.6 4.1E-16 1.4E-20 109.9 6.7 69 155-228 2-81 (81)
328 2bz2_A Negative elongation fac 99.6 9.1E-16 3.1E-20 116.6 9.1 76 152-234 37-112 (121)
329 2mss_A Protein (musashi1); RNA 99.6 3.2E-16 1.1E-20 108.7 6.0 69 156-230 1-75 (75)
330 2ki2_A SS-DNA binding protein 99.6 1.2E-16 4.2E-21 115.0 3.8 74 155-234 2-81 (90)
331 1wg5_A Heterogeneous nuclear r 99.6 3E-15 1E-19 110.7 11.3 76 153-234 14-95 (104)
332 3ue2_A Poly(U)-binding-splicin 99.6 1.3E-15 4.6E-20 114.7 9.4 81 32-112 19-108 (118)
333 3v4m_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 112.6 9.1 82 31-112 3-96 (105)
334 2e44_A Insulin-like growth fac 99.6 1.8E-15 6.2E-20 110.2 9.8 76 153-233 14-92 (96)
335 2db1_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 121.0 3.5 74 153-232 16-97 (118)
336 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.5E-16 1.2E-20 109.1 5.1 70 155-230 1-76 (77)
337 3u1l_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.3E-20 128.4 9.4 79 151-234 131-230 (240)
338 2dgw_A Probable RNA-binding pr 99.6 2.4E-15 8.3E-20 108.4 9.7 74 153-233 9-87 (91)
339 2j76_E EIF-4B, EIF4B, eukaryot 99.6 7.8E-16 2.7E-20 113.1 7.0 76 151-233 16-98 (100)
340 2hzc_A Splicing factor U2AF 65 99.6 3E-15 1E-19 106.9 9.7 73 153-229 5-86 (87)
341 3d2w_A TAR DNA-binding protein 99.6 3E-15 1E-19 107.4 9.5 75 153-234 10-85 (89)
342 1jmt_A Splicing factor U2AF 35 99.6 5.7E-16 1.9E-20 114.4 5.4 72 38-110 20-103 (104)
343 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.7E-20 114.5 7.6 75 153-233 14-94 (114)
344 1wez_A HnRNP H', FTP-3, hetero 99.6 3.4E-15 1.2E-19 109.9 8.6 75 153-234 14-93 (102)
345 3egn_A RNA-binding protein 40; 99.6 4.9E-15 1.7E-19 116.2 9.9 78 153-235 44-132 (143)
346 1wf0_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.1E-20 108.4 6.6 75 154-235 5-80 (88)
347 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4.2E-20 117.9 5.9 73 153-231 43-123 (136)
348 2dnn_A RNA-binding protein 12; 99.6 6.6E-15 2.2E-19 109.5 9.1 74 152-232 14-92 (109)
349 2lmi_A GRSF-1, G-rich sequence 99.6 1.5E-15 5.1E-20 113.0 5.6 74 153-232 10-91 (107)
350 1wel_A RNA-binding protein 12; 99.6 1.6E-15 5.4E-20 116.0 5.5 74 153-232 24-103 (124)
351 2xs2_A Deleted in azoospermia- 99.6 1.9E-15 6.7E-20 111.3 5.7 76 152-234 7-87 (102)
352 2lcw_A RNA-binding protein FUS 99.3 1.8E-16 6.2E-21 119.8 0.0 79 152-235 5-97 (116)
353 1iqt_A AUF1, heterogeneous nuc 99.6 1.5E-15 5.1E-20 105.3 4.6 69 156-230 1-75 (75)
354 2hgn_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 117.8 5.1 74 154-234 46-124 (139)
355 2f3j_A RNA and export factor b 99.6 8.3E-15 2.9E-19 118.8 9.2 79 150-233 84-167 (177)
356 3q2s_C Cleavage and polyadenyl 99.6 4.3E-15 1.5E-19 125.6 7.6 77 153-232 67-149 (229)
357 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.4E-14 2.2E-18 102.2 10.9 66 43-115 27-92 (100)
358 2hgm_A HNRPF protein, heteroge 99.5 1.7E-14 5.9E-19 109.8 7.2 72 153-231 41-119 (126)
359 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.8E-19 110.5 4.8 74 154-231 23-103 (123)
360 2pe8_A Splicing factor 45; RRM 99.5 9.3E-14 3.2E-18 102.5 9.7 75 153-232 7-93 (105)
361 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.7E-18 112.8 11.8 73 154-232 109-186 (193)
362 3tht_A Alkylated DNA repair pr 99.5 7.1E-14 2.4E-18 124.0 9.0 77 29-111 14-97 (345)
363 2dit_A HIV TAT specific factor 99.5 6.4E-13 2.2E-17 99.5 12.3 77 153-234 14-103 (112)
364 2dnl_A Cytoplasmic polyadenyla 99.5 9.9E-14 3.4E-18 104.3 7.6 69 154-230 8-85 (114)
365 3s6e_A RNA-binding protein 39; 99.5 2.7E-13 9.1E-18 101.4 9.8 79 30-112 4-92 (114)
366 3tht_A Alkylated DNA repair pr 99.4 3.7E-13 1.3E-17 119.4 9.6 76 151-231 15-97 (345)
367 2j8a_A Histone-lysine N-methyl 99.4 1.5E-13 5.2E-18 102.8 5.8 73 155-232 3-95 (136)
368 3v4m_A Splicing factor U2AF 65 99.4 6.2E-13 2.1E-17 98.1 9.1 74 153-231 4-95 (105)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.4E-12 1.8E-16 91.9 12.6 64 164-234 27-91 (100)
370 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.1E-16 96.0 8.6 73 154-231 20-107 (118)
371 1jmt_A Splicing factor U2AF 35 99.3 8.9E-13 3E-17 97.1 5.3 67 159-230 20-103 (104)
372 3s6e_A RNA-binding protein 39; 99.3 7.3E-12 2.5E-16 93.5 8.4 73 154-231 7-91 (114)
373 1owx_A Lupus LA protein, SS-B, 99.2 5.1E-11 1.7E-15 89.1 9.0 75 31-111 16-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 5.1E-11 1.8E-15 83.5 7.6 73 32-113 6-86 (91)
375 2dnr_A Synaptojanin-1; RRM dom 99.2 1.2E-10 4E-15 81.7 8.2 73 153-233 6-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.1 2.4E-10 8.1E-15 85.5 9.8 75 150-229 14-92 (121)
377 3dxb_A Thioredoxin N-terminall 99.1 2.8E-10 9.5E-15 95.6 8.3 80 33-112 124-212 (222)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 2.6E-10 9E-15 80.2 5.2 72 31-111 13-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 6.3E-10 2.1E-14 78.3 5.7 73 151-231 12-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 2.9E-08 9.9E-13 83.2 7.6 60 167-231 142-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 1E-07 3.4E-12 68.4 7.4 69 155-228 22-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 2.2E-07 7.4E-12 66.7 8.8 74 30-109 18-96 (117)
383 1wey_A Calcipressin 1; structu 98.4 1.9E-06 6.4E-11 61.7 9.3 73 155-232 6-83 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.3 3.8E-05 1.3E-09 54.7 13.7 71 155-231 9-82 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 1E-05 3.4E-10 57.6 9.7 73 30-111 5-82 (104)
386 1wey_A Calcipressin 1; structu 98.0 1.8E-05 6.3E-10 56.5 7.6 75 32-112 4-83 (104)
387 1uw4_A UPF3X; nonsense mediate 98.0 7E-05 2.4E-09 52.6 9.3 67 34-100 2-70 (91)
388 1whv_A Poly(A)-specific ribonu 97.7 0.00016 5.5E-09 50.8 8.1 54 33-95 16-69 (100)
389 1whv_A Poly(A)-specific ribonu 97.4 0.0015 5.2E-08 45.8 9.3 54 155-213 17-70 (100)
390 1wwh_A Nucleoporin 35, nucleop 97.3 0.0013 4.6E-08 48.3 8.8 74 30-111 21-95 (119)
391 2l08_A Regulator of nonsense t 97.3 0.00058 2E-08 48.2 6.5 69 32-100 8-78 (97)
392 1wwh_A Nucleoporin 35, nucleop 97.2 0.0017 5.9E-08 47.7 8.5 70 154-230 24-94 (119)
393 3ctr_A Poly(A)-specific ribonu 97.2 0.00052 1.8E-08 48.4 5.4 54 35-96 7-60 (101)
394 1uw4_A UPF3X; nonsense mediate 97.2 0.0024 8E-08 44.8 8.7 71 155-230 2-85 (91)
395 3ctr_A Poly(A)-specific ribonu 96.7 0.0021 7.2E-08 45.3 4.9 54 155-213 7-60 (101)
396 3p3d_A Nucleoporin 53; structu 96.2 0.0075 2.5E-07 44.9 5.5 79 32-112 6-98 (132)
397 3pq1_A Poly(A) RNA polymerase; 96.2 0.0017 6E-08 59.4 2.5 57 32-94 52-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 96.0 0.0035 1.2E-07 57.5 3.2 53 155-210 54-107 (464)
399 2l08_A Regulator of nonsense t 95.8 0.013 4.6E-07 41.2 4.8 71 155-230 10-93 (97)
400 3p3d_A Nucleoporin 53; structu 95.5 0.017 5.9E-07 43.0 4.7 69 155-230 8-96 (132)
401 3d45_A Poly(A)-specific ribonu 92.5 0.35 1.2E-05 45.1 8.0 55 33-96 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 86.7 2.5 8.5E-05 39.3 8.7 57 154-215 440-496 (507)
403 4e8u_A Putative uncharacterize 55.0 23 0.00077 27.5 5.4 48 35-85 14-72 (172)
404 2g0c_A ATP-dependent RNA helic 44.5 21 0.00072 23.2 3.3 59 44-111 12-75 (76)
405 4eyt_A Telomerase associated p 38.9 89 0.003 21.1 7.6 55 154-212 12-66 (129)
406 2cu1_A Mitogen-activated prote 36.2 1E+02 0.0035 21.4 5.7 64 161-232 23-87 (103)
407 4e8u_A Putative uncharacterize 34.6 63 0.0022 25.0 5.0 55 156-210 14-81 (172)
408 1xn9_A 30S ribosomal protein S 33.1 22 0.00075 25.0 2.0 49 43-92 28-81 (101)
409 2lfv_A Protein DAMX; cell divi 38.6 9.5 0.00032 27.1 0.0 61 33-98 25-87 (106)
410 2v94_A RPS24, 30S ribosomal pr 32.2 25 0.00086 24.9 2.2 48 43-91 37-89 (107)
411 3u5c_Y RP50, 40S ribosomal pro 30.0 36 0.0012 25.2 2.8 48 43-91 33-85 (135)
412 3lpe_A Putative transcription 28.9 1.4E+02 0.0046 20.2 6.3 46 169-215 27-73 (92)
413 2g1d_A 30S ribosomal protein S 28.4 23 0.00079 24.7 1.4 48 43-91 29-81 (98)
414 2inr_A DNA topoisomerase 4 sub 26.5 1.6E+02 0.0053 27.2 6.9 63 33-97 275-341 (514)
415 2xzm_P RPS24E; ribosome, trans 26.3 45 0.0015 25.1 2.8 48 43-91 31-83 (149)
416 3zzp_A TS9, ribosomal protein 24.1 1.4E+02 0.0049 19.5 4.7 22 155-178 47-68 (77)
417 1ywx_A 30S ribosomal protein S 24.1 1.4E+02 0.0049 20.8 4.9 48 43-91 28-80 (102)
418 3ts2_A Protein LIN-28 homolog 22.7 15 0.0005 27.8 -0.5 28 48-83 2-29 (148)
419 3fut_A Dimethyladenosine trans 22.6 1.1E+02 0.0039 25.3 5.0 32 33-65 110-141 (271)
420 3mfb_A Uncharacterized protein 22.0 1.1E+02 0.0037 23.3 4.2 36 45-80 3-41 (157)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-37 Score=260.85 Aligned_cols=166 Identities=27% Similarity=0.433 Sum_probs=148.6
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..+.++|||+|||+++||++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020857 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+........ ...++|||+|||.++++++|+++|++|| .|.++++.
T Consensus 92 ~~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~ 136 (213)
T 4f02_A 92 SQRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVV 136 (213)
T ss_dssp CCCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEE
T ss_pred ccccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhcC--CeEEEEee
Confidence 765321110 0115799999999999999999999999 99999988
Q ss_pred CC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 190 RD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 190 ~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
++ +|||||+|.+.++|.+|++.||+. .++|+.|+|.|++++
T Consensus 137 ~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~---~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 137 CDENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFVGRFKSR 181 (213)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEECCCH
T ss_pred ccCCCCceEEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEcCCC
Confidence 65 789999999999999999999999 999999999998653
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=5.3e-36 Score=263.59 Aligned_cols=186 Identities=23% Similarity=0.334 Sum_probs=168.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|++.|||..|.|++|+|.+.. .+++|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+
T Consensus 73 A~~~l~~~~~~g~~i~v~~~~---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 143 (284)
T 3smz_A 73 AINAFHQSRLRERELSVQLQP---------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAE 143 (284)
T ss_dssp HHHHHTTCEETTEECEEEECC---------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred HHHHcCCCeeCCeEEEEEecC---------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEE
Confidence 788899999999999999964 34699999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGN 161 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 161 (320)
|.+.++|.+|++.|+|..+.|++|.|.++.+..... .....++|||+|
T Consensus 144 f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------------------------~~~~~~~l~v~n 191 (284)
T 3smz_A 144 YMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------------------------ALLHSRCLCVDR 191 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT--------------------------------TTTSCSEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc--------------------------------ccCCccEEEEec
Confidence 999999999999999999999999999987643211 112337899999
Q ss_pred CCccC-cHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 162 LAPEV-TQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 162 l~~~~-t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
||.++ ++++|+++|+.|| .|.++.+.++ +|+|||+|.+.++|.+|+..||+. .++|+.|+|.|+.++
T Consensus 192 lp~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVH--SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL---SLGGSHLRVSFCAPG 264 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSS--CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEEECCSS
T ss_pred CCcccCCHHHHHHHhhCCC--CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC---ccCCeEEEEEEecCC
Confidence 99995 9999999999999 8888888775 799999999999999999999999 999999999998654
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=238.92 Aligned_cols=160 Identities=24% Similarity=0.481 Sum_probs=145.4
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
|+|||+|||+++|+++|+++|+.||.|.++++++++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999996 6889999999999999999999999999999999999998654
Q ss_pred CCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--
Q 020857 114 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 191 (320)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-- 191 (320)
... .....++|||+|||.++++++|+++|++|| .|.++.+.++
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCC
Confidence 321 112337899999999999999999999999 9999999755
Q ss_pred ----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 192 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 192 ----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
+|+|||+|.+.++|.+|++.||+. .++|+.|+|+|+++
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCC---ccCCcEEEEEecCC
Confidence 689999999999999999999999 99999999999863
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.4e-35 Score=239.04 Aligned_cols=159 Identities=31% Similarity=0.488 Sum_probs=146.8
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
++++|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC
Q 020857 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~ 191 (320)
+.... ...++|||+|||.++++++|+++|++|| .|.++.+.++
T Consensus 82 ~~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRD 124 (168)
T ss_dssp CCSST-----------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEEC
T ss_pred CCccc-----------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEc
Confidence 54321 1226899999999999999999999999 9999998866
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEec
Q 020857 192 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWG 230 (320)
Q Consensus 192 ------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a 230 (320)
+|+|||+|.+.++|.+|++.||+. .+.| ++|+|+||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNV---IPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCC---EecCCCeEEEEEeC
Confidence 489999999999999999999999 8977 99999986
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=3.9e-36 Score=253.72 Aligned_cols=176 Identities=22% Similarity=0.416 Sum_probs=148.8
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++|||+|||+++||++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee
Q 020857 110 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 189 (320)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~ 189 (320)
+.......... ... .......++|||+|||.++++++|+++|++|| .|.++++.
T Consensus 105 ~~~~~~~~~~~-----~~~-------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~ 158 (216)
T 2qfj_A 105 PSNIGQAQPII-----DQL-------------------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLA 158 (216)
T ss_dssp CSCCGGGHHHH-----HHH-------------------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEE
T ss_pred CCCccccchhh-----hhh-------------------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEE
Confidence 66432111000 000 00012237899999999999999999999999 99999998
Q ss_pred CC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020857 190 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 190 ~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
++ +|+|||+|.+.++|.+|++.||+. .++|+.|+|.|+..+.
T Consensus 159 ~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~---~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 159 RDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF---DLGGQYLRVGKAVTPP 206 (216)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BCSSSBCEEEECSSCS
T ss_pred ecCCCCCcCceEEEEecCHHHHHHHHHHccCC---EeCCcEEEEEEecCCC
Confidence 66 689999999999999999999999 9999999999997653
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.8e-35 Score=236.81 Aligned_cols=158 Identities=28% Similarity=0.464 Sum_probs=144.7
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
+++|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|++..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 67999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-
Q 020857 113 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 191 (320)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~- 191 (320)
.... ...++|||+|||.++++++|+++|++|| .|.++++.++
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecC
Confidence 4211 1126899999999999999999999999 8999998765
Q ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE--eEEEec
Q 020857 192 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKCSWG 230 (320)
Q Consensus 192 -----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~--l~v~~a 230 (320)
+|+|||+|.+.++|.+|++.||+. .+.|+. |+|+||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCC---ccCCCccceEEEeC
Confidence 689999999999999999999999 999964 888886
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.6e-35 Score=243.39 Aligned_cols=172 Identities=24% Similarity=0.421 Sum_probs=146.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
.++...++|||+|||+++||++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456789999999999999999999999999999999999998999999999999999999999955 999999999999
Q ss_pred EeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE
Q 020857 108 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187 (320)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~ 187 (320)
.++........ +......++|||+|||.++++++|+++|++|| .|..+.
T Consensus 87 ~~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~ 135 (196)
T 1l3k_A 87 KRAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIE 135 (196)
T ss_dssp EECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEE
T ss_pred ecccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEE
Confidence 99875432211 01122337899999999999999999999999 899999
Q ss_pred eeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCC
Q 020857 188 VQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 188 ~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~ 235 (320)
+.++ +|||||+|.+.++|.+|+.. ++. .++|+.|.|.|+.++..
T Consensus 136 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~---~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 136 IMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH---TVNGHNCEVRKALSKQE 185 (196)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC---EETTEECEEEECC----
T ss_pred EeecCCCCCccceEEEEECCHHHHHHHHHh-CCc---EECCEEEEEEecCChhH
Confidence 8865 68999999999999999987 788 99999999999976644
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=9.6e-35 Score=236.94 Aligned_cols=161 Identities=25% Similarity=0.390 Sum_probs=143.6
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhCCCeeC---CeeEE
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 106 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~ 106 (320)
++++|||+|||+++||++|+++|++||.|.+++|++++.++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999998775 67888
Q ss_pred EEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEE
Q 020857 107 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 186 (320)
Q Consensus 107 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~ 186 (320)
+.++....... ...++|||+|||.++++++|+++|++|| .|.++
T Consensus 82 ~~~~~~~~~~~----------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNNA----------------------------------VEDRKLFIGMISKKCTENDIRVMFSSFG--QIEEC 125 (175)
T ss_dssp EEECGGGCCSC----------------------------------GGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEE
T ss_pred Ecccccccccc----------------------------------CCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEE
Confidence 88776543211 1237899999999999999999999999 89999
Q ss_pred EeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCccccc---CeEeEEEecC
Q 020857 187 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKCSWGS 231 (320)
Q Consensus 187 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~---g~~l~v~~a~ 231 (320)
.+.++ +|+|||+|.+.++|.+|++.||+. .+. +++|+|.|+.
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA---QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS---CCCTTCSSCCEEEECC
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC---cccCCCCCCeEEEecC
Confidence 99876 789999999999999999999998 565 4999999973
No 9
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-34 Score=255.46 Aligned_cols=186 Identities=16% Similarity=0.224 Sum_probs=158.1
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCC-CeeEEEEeecCCCCCccceEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFV 80 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV 80 (320)
||+ |||..|.|++|.|.+.. .++|||+|||+++|+++|+++|+.|| .|.+|++++++ .|.++|||||
T Consensus 97 A~~-~~~~~~~g~~i~v~~~~----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV 164 (292)
T 2ghp_A 97 AIT-KTHKVVGQNEIIVSHLT----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYI 164 (292)
T ss_dssp HHT-TTTCEETTEECEEEECC----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEE
T ss_pred HHH-hCCcEeCCcEEEEEECC----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEE
Confidence 674 89999999999999873 67999999999999999999999999 99999999986 4889999999
Q ss_pred EecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEEC
Q 020857 81 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVG 160 (320)
Q Consensus 81 ~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 160 (320)
+|.+.++|.+|++.|+|..+.|++|.|.++.+....... .......++|||+
T Consensus 165 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~ 216 (292)
T 2ghp_A 165 DVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIR 216 (292)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------------------------CCTTTEEEEE
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------------------------cccCCCCceEEEE
Confidence 999999999999999999999999999998765432111 0112334789999
Q ss_pred CCCcc-CcHHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 161 NLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 161 nl~~~-~t~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
|||.+ +++++|+++|++|| .|..+++.++ +|+|||+|.+.++|.+|+ .||+. .++|+.|+|.|+++
T Consensus 217 nlp~~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~---~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 217 NLSTELLDENLLRESFEGFG--SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS---LLGNREISVSLADK 290 (292)
T ss_dssp EECTTTCCHHHHHHHHGGGS--CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE---EETTEEEEEEECCC
T ss_pred CCCcccCCHHHHHHHHhccC--CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC---EECCcEEEEEEecC
Confidence 99999 99999999999999 9999999653 689999999999999999 99999 99999999999976
Q ss_pred C
Q 020857 233 P 233 (320)
Q Consensus 233 ~ 233 (320)
+
T Consensus 291 k 291 (292)
T 2ghp_A 291 K 291 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=9.4e-34 Score=248.95 Aligned_cols=196 Identities=21% Similarity=0.313 Sum_probs=151.6
Q ss_pred CCCCceeEEEcCCCccCcHHHHH----HHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
+..++++|||+|||+++|+++|+ ++|+.||.|.+|+|++ +++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999977 8999999999999875 6889999999999999999999999999999999
Q ss_pred EEEEeccCCCCCCCcccCCccccc-------------------c---------ccCCCC---------------------
Q 020857 105 IRCNWATKGAGNNEDKQSSDAKSV-------------------V---------ELTNGS--------------------- 135 (320)
Q Consensus 105 l~v~~a~~~~~~~~~~~~~~~~~~-------------------~---------~~~~~~--------------------- 135 (320)
|+|.|+.................. . ......
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999999665431100000000000 0 000000
Q ss_pred ---------CCCC------------------CCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe
Q 020857 136 ---------SEDG------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188 (320)
Q Consensus 136 ---------~~~~------------------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~ 188 (320)
.... .............+.++|||+|||.++++++|+++|++|| .|.++++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~ 239 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEE
Confidence 0000 0000001113344678999999999999999999999999 9999999
Q ss_pred eCCC-cEEEEEeCCHHHHHHHHHHcCCCCccccc-CeEeEEEecCC
Q 020857 189 QRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSK 232 (320)
Q Consensus 189 ~~~~-g~afV~f~~~~~A~~A~~~l~~~~~~~~~-g~~l~v~~a~~ 232 (320)
.+++ |+|||+|.+.++|.+|++.||+. .+. |+.|+|.|+++
T Consensus 240 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGRHDIAFVEFDNEVQAGAARDALQGF---KITQNNAMKISFAKK 282 (282)
T ss_pred ecCCCcEEEEEeCCHHHHHHHHHHcCCc---EeCCCCEEEEEEecC
Confidence 9886 99999999999999999999999 999 99999999863
No 11
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.1e-33 Score=240.97 Aligned_cols=196 Identities=21% Similarity=0.333 Sum_probs=151.2
Q ss_pred CCCCceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 29 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
...++++|||+|||+ ++|+++|+++|+.||.|.+|+|++++ +|||||+|.+.++|.+|++.|++..+.|++|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445688999999999 99999999999999999999999874 789999999999999999999999999999999
Q ss_pred EeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE
Q 020857 108 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 187 (320)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~ 187 (320)
.++.........................................++.++|||+|||.++++++|+++|++|| ..|.+++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~~i~~v~ 183 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFK 183 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC-CCeeEEE
Confidence 999765332211111100000000000000000000011112234568999999999999999999999998 3688999
Q ss_pred ee-CCCcEEEEEeCCHHHHHHHHHHcCCCCccccc-CeEeEEEecCCC
Q 020857 188 VQ-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 233 (320)
Q Consensus 188 ~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-g~~l~v~~a~~~ 233 (320)
+. +++|+|||+|.+.++|.+|++.||+. .++ |+.|+|.|++++
T Consensus 184 i~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 228 (229)
T ss_dssp ECSSSTTCEEEEESSHHHHHHHHHHHTTC---BSSSSCBCEEEECSSC
T ss_pred EEECCCcEEEEEECCHHHHHHHHHHHCCC---ccCCCCeEEEEEecCC
Confidence 84 47999999999999999999999999 999 999999998764
No 12
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.1e-35 Score=236.45 Aligned_cols=159 Identities=25% Similarity=0.468 Sum_probs=143.2
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
++++|||+|||+++||++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999988999999999999999999999974 678999999998875
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC
Q 020857 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 191 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~ 191 (320)
+.... ...++|||+|||.++++++|+++|++|| .|.++.+.++
T Consensus 80 ~~~~~-----------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDEQ-----------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLD 122 (167)
T ss_dssp CHHHH-----------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCS
T ss_pred chhhc-----------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEc
Confidence 43110 1126899999999999999999999999 8999998765
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 192 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 192 ------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
+|+|||+|.+.++|.+|++ +++. .++|+.|+|.|+.++
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFI---DFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEE---CSSSSCEEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCE---EeCCeEEEEeecCCC
Confidence 5899999999999999998 8999 999999999998764
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.6e-33 Score=234.62 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=148.8
Q ss_pred ceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 33 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 33 ~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
+++|||+|||+ ++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57999999999 99999999999999999999998774 7899999999999999999999999999999999997
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC-
Q 020857 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 190 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~- 190 (320)
........................................++.++|||+|||.++++++|+++|++|| ..|.++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 65432221111110000000000000000011111122234578999999999999999999999998 3678888854
Q ss_pred CCcEEEEEeCCHHHHHHHHHHcCCCCccccc-CeEeEEEecCCC
Q 020857 191 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKCSWGSKP 233 (320)
Q Consensus 191 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~-g~~l~v~~a~~~ 233 (320)
++|+|||+|.+.++|.+|++.||+. .++ |+.|+|.|++++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS---CCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC---ccCCCCeEEEEeeccc
Confidence 6899999999999999999999999 899 999999998764
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=3.7e-33 Score=233.20 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=140.6
Q ss_pred CceeEEEcCCC-ccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 32 GHFNIFVGDLS-PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 32 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
++++|||+||| +++|+++|+++|+.||.|.+|+|+++ .+|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred cCCCCCCCcc-cCCccccccccCCCCCCCCCCC-CCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccE--EEE
Q 020857 111 TKGAGNNEDK-QSSDAKSVVELTNGSSEDGKET-TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI--EEV 186 (320)
Q Consensus 111 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i--~~~ 186 (320)
.......... ...+.................. .........++.++|||+|||+++++++|+++|++|| .| ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEE
Confidence 7544211100 0000000000000000000000 0000011234568999999999999999999999999 66 888
Q ss_pred EeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe----EeEEEec
Q 020857 187 RVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK----QMKCSWG 230 (320)
Q Consensus 187 ~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~----~l~v~~a 230 (320)
++.++ +|+|||+|.+.++|.+|+..||+. .+.|+ ++.|+|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~---~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHY---QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTC---EECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCC---CccCCCCCcceEEEec
Confidence 88765 589999999999999999999999 88875 5666654
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.7e-34 Score=233.79 Aligned_cols=165 Identities=22% Similarity=0.366 Sum_probs=143.0
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+.++++|||+|||+++|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|+ +|++..+.|++|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 5567899999999999999999999999998877 34455568999999999999999999999 699999999999999
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEE-
Q 020857 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR- 187 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~- 187 (320)
++....... ....++|||+|||.++++++|+++|++|| .|..+.
T Consensus 87 ~~~~~~~~~---------------------------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~~~ 131 (175)
T 1fje_B 87 KPKGRDSKK---------------------------------VRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQ 131 (175)
T ss_dssp CCCCSSCST---------------------------------TGGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEECS
T ss_pred cCCCccccc---------------------------------cccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEecC
Confidence 987643211 12347999999999999999999999999 777771
Q ss_pred eeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 188 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 188 ~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
..+++|+|||+|.+.++|.+|++.||+. .++|+.|+|+|++++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEE---EETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEecCCC
Confidence 1234899999999999999999999999 999999999998764
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=7.9e-34 Score=236.31 Aligned_cols=177 Identities=14% Similarity=0.242 Sum_probs=142.4
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCC-----------CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYP-----------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G-----------~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
.+++|||+|||+++||++|+++|+.|| .|.++++ +.++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4555444 456899999999999999999 8999999
Q ss_pred CCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCC
Q 020857 101 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180 (320)
Q Consensus 101 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~ 180 (320)
.|++|.|.++.............. ...............++|||+|||.++++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G- 139 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG- 139 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS-
T ss_pred cCceEEEeCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-
Confidence 999999999876533221110000 0000001112224558999999999999999999999999
Q ss_pred ccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCC
Q 020857 181 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 181 ~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~ 235 (320)
.|.++.+.++ +|+|||+|.+.++|.+|++.||+. .++|+.|+|.|++++..
T Consensus 140 -~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 140 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRASVGAK 196 (198)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC---EETTEECEEEESCCCCC
T ss_pred -CccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEECCCCCC
Confidence 8999999866 689999999999999999999999 99999999999976543
No 17
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.7e-32 Score=221.93 Aligned_cols=153 Identities=16% Similarity=0.312 Sum_probs=136.0
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccC----C-------CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
++++|||+|||+++|+++|+++|+.| | .|.++++. .++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 66666664 35799999999999999999 9999999
Q ss_pred CCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCC
Q 020857 101 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 180 (320)
Q Consensus 101 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~ 180 (320)
.|++|.|.++....... ..++|||+|||.++++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~~-----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G- 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPLP-----------------------------------GAHKLFIGGLPNYLNDDQVKELLTSFG- 119 (172)
T ss_dssp TTEECEEECCSSCCCCT-----------------------------------TTTCEEEECCCTTCCHHHHHHHHHTTS-
T ss_pred cCceeeecCCcccCCCC-----------------------------------CCCEEEEEcCCCcCCHHHHHHHHHhcC-
Confidence 99999999865432111 126799999999999999999999999
Q ss_pred ccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 181 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 181 ~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.|.++.+.++ +|+|||+|.+.++|.+|++.||+. .++|+.|+|+||.
T Consensus 120 -~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRAS 172 (172)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC---EETTEECEEEECC
T ss_pred -CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC---EECCeEEEEEeCC
Confidence 8999999766 689999999999999999999999 9999999999973
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=8.8e-31 Score=227.41 Aligned_cols=153 Identities=28% Similarity=0.454 Sum_probs=138.0
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
....+++|||+|||+++|+++|+++|+.||.|.+|+|.++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456789999999999999999999999999999999643 6899999999999999999999999999999999
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe
Q 020857 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~ 188 (320)
++.+. ++|||+|||.++|+++|+++|+.|| .|.++.+
T Consensus 92 ~a~~~-----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i 128 (261)
T 3sde_A 92 FATHG-----------------------------------------AALTVKNLSPVVSNELLEQAFSQFG--PVEKAVV 128 (261)
T ss_dssp ECCCS-----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEE
T ss_pred ecccC-----------------------------------------CcccccCCCCCCCHHHHHHHHHhcC--CeEEEEe
Confidence 97641 5799999999999999999999999 9999998
Q ss_pred eCC-----CcEEEEEeCCHHHHHHHHHHcCC-CCccccc---CeEeEEEecCCC
Q 020857 189 QRD-----KGFGFVRYSTHAEAALAIQMGNT-TQSSYLF---GKQMKCSWGSKP 233 (320)
Q Consensus 189 ~~~-----~g~afV~f~~~~~A~~A~~~l~~-~~~~~~~---g~~l~v~~a~~~ 233 (320)
.++ +|+|||+|.+.++|.+|+..||+ . .+. +++|.|.++...
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~---~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 129 VVDDRGRATGKGFVEFAAKPPARKALERCGDGA---FLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC---EESSSSCCBCEEEECCCE
T ss_pred eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe---EEecCCCceEEEeecccc
Confidence 765 79999999999999999999954 4 333 899999998754
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.9e-30 Score=226.93 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=138.2
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.++++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++.|++..+.|++|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3578999999999999999999999999 998888 457899999999999999999999999999999999974
Q ss_pred cCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC
Q 020857 111 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 190 (320)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~ 190 (320)
... ++|||+|||.++++++|+++|++|| .|..+.+.+
T Consensus 93 ~~~-----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~ 129 (284)
T 3smz_A 93 PTD-----------------------------------------ALLCVANLPPSLTQQQFEELVRPFG--SLERCFLVY 129 (284)
T ss_dssp CCS-----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEE
T ss_pred CCC-----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcC--CeeEEEEEe
Confidence 321 6899999999999999999999999 899998875
Q ss_pred C------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020857 191 D------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 191 ~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
+ +|+|||+|.+.++|.+|+..||+. .++|+.|+|.|+.++.
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~---~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGK---PLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEECCGGG
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCC---EeCCcEEEEEECCCCC
Confidence 4 689999999999999999999999 9999999999987643
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.3e-30 Score=227.45 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=137.9
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+..+++|||+|||+++|+++|+++|+.||.|.+|+|++++. + ++|||||+|.+.++|.+|+ .+++..+.|++|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 456689999999999999999999999999999999999863 3 5899999999999999999 599999999999999
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe
Q 020857 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 188 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~ 188 (320)
++.. ++|||+|||.++++++|+++|+.|| ..|.++.+
T Consensus 114 ~~~~------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G-~~i~~v~i 150 (292)
T 2ghp_A 114 HLTE------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDIN-VVALSIRL 150 (292)
T ss_dssp ECCS------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTT-CCCCEEEC
T ss_pred ECCC------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhC-CCeEEEEE
Confidence 8531 6899999999999999999999998 35777777
Q ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCCC
Q 020857 189 QR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 189 ~~-----~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~~ 235 (320)
.+ .+|+|||+|.+.++|.+|+..||+. .+.|+.|+|.|+.+...
T Consensus 151 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 151 PSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL---KIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp C-------CCEEEEECSSHHHHHHHHHHHTTC---EETTEECEEEECCCC--
T ss_pred EeCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EeCCcEEEEEECCCCcc
Confidence 65 4799999999999999999999999 99999999999876543
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=6.3e-25 Score=166.35 Aligned_cols=110 Identities=26% Similarity=0.515 Sum_probs=75.4
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
.+++|||+|||+++||++|+++|+.||.|.+|+|++|+ +.++|||||+|.+.++|.+|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999995 5589999999999999999999999999999999999987
Q ss_pred CCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHH
Q 020857 112 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 170 (320)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 170 (320)
++....... .......++|||+|||+++|++-
T Consensus 82 ~~~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-------------------------------------------------------
T ss_pred Ccccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 643321111 01112235799999999999863
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=153.37 Aligned_cols=82 Identities=32% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+++|||+|||+++||++|+++|++||+|.+|+|++|+.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 020857 111 TK 112 (320)
Q Consensus 111 ~~ 112 (320)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 65
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=5.4e-23 Score=164.69 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=107.7
Q ss_pred EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCC
Q 020857 62 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKE 141 (320)
Q Consensus 62 ~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (320)
+++|+++. ..++|||||+|.+.++|++|++.+++....+..+.+............
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 57 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG---------------------- 57 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC----------------------
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc----------------------
Confidence 46777774 479999999999999999999888764333322322211110000000
Q ss_pred CCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCC
Q 020857 142 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 142 ~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
.............++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00001112223458999999999999999999999999 9999999865 689999999999999999999999
Q ss_pred CcccccCeEeEEEecCCCCC
Q 020857 216 QSSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 216 ~~~~~~g~~l~v~~a~~~~~ 235 (320)
.+.|+.|+|.|++++.+
T Consensus 136 ---~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 136 ---VLDGRELRVQMARYGRP 152 (158)
T ss_dssp ---ESSSSEEEEEEECCSSC
T ss_pred ---EECCeEEEEEECCCCCC
Confidence 99999999999987543
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=5.2e-23 Score=163.36 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=113.2
Q ss_pred CCCccceEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCC
Q 020857 71 TGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 149 (320)
Q Consensus 71 ~g~~~G~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (320)
....+|+++|+|.+.++|++|++.+ |+..+.| .+.+.++........... .........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~ 68 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-------------------HHHHHMHRD 68 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-------------------SCCCCSCSS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-------------------ccccccccc
Confidence 4578999999999999999999999 9999999 999997764321100000 000011122
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.....++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|+..||+. .+.|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR---TLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS---CSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEE
Confidence 334458999999999999999999999999 9999999988 999999999999999999999999 9999999999
Q ss_pred ecCCC
Q 020857 229 WGSKP 233 (320)
Q Consensus 229 ~a~~~ 233 (320)
|++++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98765
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.7e-22 Score=160.63 Aligned_cols=110 Identities=46% Similarity=0.848 Sum_probs=102.1
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|++.|||..|.|++|+|.++..... ....+.++|||+|||.++|+++|+++|+.||.|.++.+++++.+|.++|||||+
T Consensus 57 A~~~l~~~~~~g~~i~v~~~~~~~~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 135 (166)
T 3md3_A 57 ALQTLNGKQIENNIVKINWAFQSQQ-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVS 135 (166)
T ss_dssp HHHHHTTCEETTEECEEEECCCCCC-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEE
T ss_pred HHHHcCCCccCCCeeEEEEcCCCCC-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEE
Confidence 7788999999999999999976553 445568899999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
|.+.++|.+|++.|||..+.|++|+|.|+.+
T Consensus 136 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 136 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999999999999863
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=3.8e-23 Score=149.68 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=77.6
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCC-CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEec
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWA 110 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~v~~a 110 (320)
+++|||+|||+++||++|+++|++|| .|.+|+|++|+.+|.++|||||+|.+.++|.+|++.+ ++..+.|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999887 456799999999999
Q ss_pred cCCCCC
Q 020857 111 TKGAGN 116 (320)
Q Consensus 111 ~~~~~~ 116 (320)
.++...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876544
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=149.70 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=79.3
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.+.++|||+|||+++||++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 020857 111 TKG 113 (320)
Q Consensus 111 ~~~ 113 (320)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 28
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=2.3e-21 Score=146.69 Aligned_cols=94 Identities=54% Similarity=0.926 Sum_probs=86.3
Q ss_pred CCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 24 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+....+..+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 6 SGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33455677899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCC
Q 020857 104 QIRCNWATKGAGNN 117 (320)
Q Consensus 104 ~l~v~~a~~~~~~~ 117 (320)
.|+|.|+.++....
T Consensus 86 ~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 86 QIRTNWATRKPPAP 99 (115)
T ss_dssp ECEEEESSCCCCCS
T ss_pred EEEEEEccCCCCCC
Confidence 99999998765543
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2e-21 Score=144.10 Aligned_cols=90 Identities=27% Similarity=0.431 Sum_probs=83.9
Q ss_pred CCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 26 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
.+....++++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 8 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp SCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34456678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 020857 106 RCNWATKGAG 115 (320)
Q Consensus 106 ~v~~a~~~~~ 115 (320)
+|.++.++..
T Consensus 88 ~v~~a~~~~~ 97 (103)
T 2cq0_A 88 NVEWAKPSTN 97 (103)
T ss_dssp EEEESSCCCC
T ss_pred EEEECCCCCC
Confidence 9999987654
No 30
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=145.65 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=75.4
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCC--eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCC----eeCCeeE
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPS--CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGSRQI 105 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~----~~~g~~l 105 (320)
.=.+|||+|||+++||++|+++|++||. |.+|++++|+.||++||||||+|.+.++|.+|++.||+. .+.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 679999999999999999999999999999999999987 5899999
Q ss_pred EEEeccC
Q 020857 106 RCNWATK 112 (320)
Q Consensus 106 ~v~~a~~ 112 (320)
.|.|+..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.86 E-value=1.2e-21 Score=158.69 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=98.2
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|+ .|||..|.|++|+|.++.... .....++|||+|||.++|+++|+++|++||.|.++++++++.+|.++|||||+
T Consensus 67 A~-~~~~~~~~g~~i~v~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~ 142 (172)
T 2g4b_A 67 AM-AFDGIIFQGQSLKIRRPHDYQ---PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCE 142 (172)
T ss_dssp HG-GGTTCEETTEECEEECCSSCC---CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEE
T ss_pred HH-HhCCcEecCceeeecCCcccC---CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEE
Confidence 67 799999999999999986543 33457899999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
|.+.++|.+|++.|||..+.|++|.|.|+.
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 143 YVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp ESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999999873
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=140.08 Aligned_cols=83 Identities=55% Similarity=0.976 Sum_probs=77.3
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.++++|||+|||.++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 020857 111 TKG 113 (320)
Q Consensus 111 ~~~ 113 (320)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 33
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=2.6e-22 Score=154.10 Aligned_cols=112 Identities=15% Similarity=0.249 Sum_probs=93.4
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
+|..++|+.+.|.-.......+......+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|.++|||||+
T Consensus 5 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~ 84 (124)
T 2jwn_A 5 CMQTTHSKMTAGAYTEGPPQPLSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIE 84 (124)
T ss_dssp CSCCCCCCCCCSCSCCCSCCSCCHHHHHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEE
T ss_pred hhhhcCCcccCCccCCCCCCCccccccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEE
Confidence 67889999988863222222111112233457899999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
|.+.++|.+|+ .|+|..+.|+.|+|.++....
T Consensus 85 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 85 FAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp ESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred ECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 99999999999 899999999999999987643
No 34
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.86 E-value=1.5e-21 Score=164.07 Aligned_cols=114 Identities=24% Similarity=0.406 Sum_probs=102.3
Q ss_pred hhccccCcccCCCceEEEecccCCCCc--------CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQRE--------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR 73 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~--------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~ 73 (320)
||+.|||..|.|++|+|.++....... .....++|||+|||.++|+++|+++|++||.|.+++|++++.+|.
T Consensus 86 A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~ 165 (216)
T 2qfj_A 86 ALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGK 165 (216)
T ss_dssp HHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCC
T ss_pred HHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 778899999999999999987654321 235678999999999999999999999999999999999988999
Q ss_pred ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020857 74 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 74 ~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..+..
T Consensus 166 ~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 166 HKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred cCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999999999999999999999999987644
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=3.2e-21 Score=137.10 Aligned_cols=82 Identities=50% Similarity=0.867 Sum_probs=78.4
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccC
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 112 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~ 112 (320)
+.+|||+|||.++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 020857 113 GA 114 (320)
Q Consensus 113 ~~ 114 (320)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.5e-21 Score=141.33 Aligned_cols=89 Identities=35% Similarity=0.474 Sum_probs=83.0
Q ss_pred CCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 24 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+..+....++++|||+|||+++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 6 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 6 SGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 33455677789999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred eEEEEeccC
Q 020857 104 QIRCNWATK 112 (320)
Q Consensus 104 ~l~v~~a~~ 112 (320)
+|+|.++..
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999864
No 37
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.86 E-value=2e-21 Score=156.74 Aligned_cols=106 Identities=30% Similarity=0.477 Sum_probs=98.5
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|++.|||..|.|++|+|.|+.+.. ....+++|||+|||.++|+++|+++|++||.|.++++++++.+|.++|||||+
T Consensus 61 a~~~l~~~~~~g~~l~v~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~ 137 (168)
T 1b7f_A 61 AIKVLNGITVRNKRLKVSYARPGG---ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVR 137 (168)
T ss_dssp HHHHHTTCEETTEECEEEECCCCS---STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred HHHhcCCCEeCCcEEEEEecCCCc---ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEE
Confidence 678899999999999999997654 34567899999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCC--eeEEEEec
Q 020857 82 FRNQQDAQSAINDLTGKWLGS--RQIRCNWA 110 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g--~~l~v~~a 110 (320)
|.+.++|.+|++.|||..+.| ++|+|.|+
T Consensus 138 f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 138 YNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999999987 99999885
No 38
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.86 E-value=2.4e-21 Score=160.61 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=101.2
Q ss_pred hhccccCcccCCCceEEEecccCCCC-----------------cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 64 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~-----------------~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~ 64 (320)
|| .|||..|.|++|+|.++...... ......++|||+|||.++|+++|+++|++||.|.+++
T Consensus 67 Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~ 145 (198)
T 2yh0_A 67 AM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 145 (198)
T ss_dssp HG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEE
T ss_pred HH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEE
Confidence 67 79999999999999998764321 1125679999999999999999999999999999999
Q ss_pred EeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020857 65 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 65 i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
+++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.++.
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99998899999999999999999999999999999999999999998754
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-21 Score=141.70 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=82.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...++++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=7.6e-22 Score=156.58 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=95.0
Q ss_pred hhccc-cCcccCCCceEEEecccC-------------CCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEee
Q 020857 2 AILSL-NGRHLFGQPIKVNWAYAS-------------GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 67 (320)
Q Consensus 2 ai~~l-~g~~~~g~~i~v~~~~~~-------------~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~ 67 (320)
|++.| ||..+.| +|++.++..+ .........++|||+|||+++|+++|+++|+.||.|.+|+|++
T Consensus 29 a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 107 (150)
T 2i2y_A 29 VFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVAR 107 (150)
T ss_dssp THHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECS
T ss_pred HHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEee
Confidence 67788 9999999 9999988652 1233456689999999999999999999999999999999987
Q ss_pred cCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCC
Q 020857 68 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 114 (320)
Q Consensus 68 ~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~ 114 (320)
+ ++|||||+|.+.++|.+|++.|||..+.|++|+|.++.++.
T Consensus 108 ~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 108 N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 6 58999999999999999999999999999999999987753
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=4.7e-21 Score=139.84 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=80.8
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
.++++|||+|||.++|+++|+++|++||.|.++++++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020857 111 TKGAG 115 (320)
Q Consensus 111 ~~~~~ 115 (320)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=5e-21 Score=144.85 Aligned_cols=88 Identities=27% Similarity=0.465 Sum_probs=82.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 43
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.8e-21 Score=142.53 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=83.7
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.......++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34566788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 020857 107 CNWATKGAGN 116 (320)
Q Consensus 107 v~~a~~~~~~ 116 (320)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999876543
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=140.32 Aligned_cols=87 Identities=22% Similarity=0.442 Sum_probs=81.2
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++ |++..+.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999997 99999999999999
Q ss_pred eccCCCCC
Q 020857 109 WATKGAGN 116 (320)
Q Consensus 109 ~a~~~~~~ 116 (320)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=140.26 Aligned_cols=86 Identities=17% Similarity=0.361 Sum_probs=80.9
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345668899999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 020857 108 NWATKGA 114 (320)
Q Consensus 108 ~~a~~~~ 114 (320)
.++.++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9998754
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.3e-21 Score=141.00 Aligned_cols=86 Identities=31% Similarity=0.654 Sum_probs=81.1
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEE-EEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
.++++|||+|||+++|+++|+++|+.||.|.++ +|++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 020857 110 ATKGAGN 116 (320)
Q Consensus 110 a~~~~~~ 116 (320)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=3.1e-21 Score=137.81 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=78.3
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+.++++|||+|||+++++++|+++|++||.|.++++++++.++.++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 020857 110 AT 111 (320)
Q Consensus 110 a~ 111 (320)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=142.11 Aligned_cols=89 Identities=31% Similarity=0.439 Sum_probs=82.8
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34556889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 020857 108 NWATKGAGN 116 (320)
Q Consensus 108 ~~a~~~~~~ 116 (320)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 49
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=2.8e-21 Score=146.96 Aligned_cols=86 Identities=30% Similarity=0.498 Sum_probs=80.3
Q ss_pred CCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 26 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
...++.+.++|||+|||+++|+++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecc
Q 020857 106 RCNWAT 111 (320)
Q Consensus 106 ~v~~a~ 111 (320)
+|.+++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999863
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=4.1e-21 Score=140.48 Aligned_cols=83 Identities=27% Similarity=0.590 Sum_probs=79.5
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
++++|||+|||.++++++|+++|+.||.|.+++|++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 020857 112 KGA 114 (320)
Q Consensus 112 ~~~ 114 (320)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 51
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=7.1e-22 Score=142.75 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=73.0
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCC--CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
.+|||+|||+++||++|+++|+.|| .|.+++|++|+.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q 020857 112 KGAG 115 (320)
Q Consensus 112 ~~~~ 115 (320)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=142.24 Aligned_cols=88 Identities=28% Similarity=0.446 Sum_probs=82.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34566889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987543
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=142.61 Aligned_cols=87 Identities=28% Similarity=0.563 Sum_probs=82.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
..+.+.++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|+|..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45667899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 020857 108 NWATKGA 114 (320)
Q Consensus 108 ~~a~~~~ 114 (320)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9987653
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=140.57 Aligned_cols=91 Identities=29% Similarity=0.556 Sum_probs=83.3
Q ss_pred CCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 24 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+..+....+.++|||+|||+++|+++|+++|+.||.|.+|+|+++ ++.++|||||+|.+.++|.+|++.||+..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 6 SGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 334456677899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred eEEEEeccCCCCC
Q 020857 104 QIRCNWATKGAGN 116 (320)
Q Consensus 104 ~l~v~~a~~~~~~ 116 (320)
+|.|.++.++...
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 84 PLYVALAQRKEER 96 (103)
T ss_dssp BCEEEECSSCCCC
T ss_pred EEEEEEecccccC
Confidence 9999999876543
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=142.47 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=81.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...++++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 020857 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987654
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.4e-21 Score=141.94 Aligned_cols=89 Identities=40% Similarity=0.576 Sum_probs=82.9
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 020857 108 NWATKGAGN 116 (320)
Q Consensus 108 ~~a~~~~~~ 116 (320)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x5s_A 87 DQAGKSSDN 95 (102)
T ss_dssp EEEECCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=142.67 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=83.5
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC------CCee
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT------GKWL 100 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~------~~~~ 100 (320)
.....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|+ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3455678899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeeEEEEeccCCCCC
Q 020857 101 GSRQIRCNWATKGAGN 116 (320)
Q Consensus 101 ~g~~l~v~~a~~~~~~ 116 (320)
.|++|+|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999876543
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=7.6e-21 Score=138.45 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=79.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++++++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred Eecc
Q 020857 108 NWAT 111 (320)
Q Consensus 108 ~~a~ 111 (320)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9874
No 59
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.85 E-value=4.3e-21 Score=154.53 Aligned_cols=106 Identities=35% Similarity=0.502 Sum_probs=97.2
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|++.|||..|.|++|+|.++.+.. .....++|||+|||.++|+++|+++|++||.|.++++++++.+|.++|||||+
T Consensus 60 a~~~l~~~~~~g~~l~v~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 60 AINTLNGLRLQTKTIKVSYARPSS---ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp HHHHHTTCEETTEECEEEECCCCC---GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred HHHHcCCCccCCceEEEEecCCCc---ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 678899999999999999997654 33456799999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCee--EEEEec
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQ--IRCNWA 110 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~--l~v~~a 110 (320)
|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 137 f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 137 FDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999965 888875
No 60
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=1.5e-21 Score=143.87 Aligned_cols=84 Identities=23% Similarity=0.253 Sum_probs=79.4
Q ss_pred CCCceeEEEcCCCc------cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC-
Q 020857 30 TSGHFNIFVGDLSP------EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS- 102 (320)
Q Consensus 30 ~~~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g- 102 (320)
+..+++|||+|||+ ++++++|+++|++||.|.+|+|++++.||+++|||||+|.+.++|.+|++.|||..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCC
Q 020857 103 RQIRCNWATKG 113 (320)
Q Consensus 103 ~~l~v~~a~~~ 113 (320)
++|+|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999998653
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=1.1e-20 Score=140.45 Aligned_cols=88 Identities=22% Similarity=0.388 Sum_probs=81.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC---ee
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS---RQ 104 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g---~~ 104 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.||+..+.| ++
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999997 89999999999999999999999999999988 99
Q ss_pred EEEEeccCCCCC
Q 020857 105 IRCNWATKGAGN 116 (320)
Q Consensus 105 l~v~~a~~~~~~ 116 (320)
|+|.++..+...
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999876543
No 62
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.6e-21 Score=141.36 Aligned_cols=89 Identities=27% Similarity=0.418 Sum_probs=83.0
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeec-CCCCCccceEEEEecCHHHHHHHHHHh-CCCeeCCee
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQ 104 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~~g~~~G~afV~f~~~~~A~~A~~~l-~~~~~~g~~ 104 (320)
...+...++|||+|||+++|+++|+++|+.||.|.+|+|+++ +.++.++|||||+|.+.++|.+|++.| |+..+.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 445667899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEEeccCCCC
Q 020857 105 IRCNWATKGAG 115 (320)
Q Consensus 105 l~v~~a~~~~~ 115 (320)
|+|.++.++..
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987654
No 63
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=139.18 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=81.0
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
...+.+.++|||+|||+++|+++|+++|+.|| |.+|+|++++.++.++|||||+|.+.++|.+|+ .|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34566789999999999999999999999997 999999999989999999999999999999999 9999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999987654
No 64
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.85 E-value=3.7e-21 Score=145.58 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=93.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+.++++|||+|||+++|+++|+++|+.||.|.+|+|+++ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999865 5569999999999999999999999999999999999
Q ss_pred eccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEEEECCCCccCcHHHHHHHHhccC
Q 020857 109 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 179 (320)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 179 (320)
++.+.... .+++...++++|+++|++||
T Consensus 81 ~a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 81 YYNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp ECCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred EecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 98753211 46788889999999999998
No 65
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=7.5e-21 Score=141.70 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=82.8
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee---CCe
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSR 103 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~---~g~ 103 (320)
...+.+.++|||+|||.++||++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 44566789999999999999999999999999999999999998999999999999999999999999999987 899
Q ss_pred eEEEEeccCCCC
Q 020857 104 QIRCNWATKGAG 115 (320)
Q Consensus 104 ~l~v~~a~~~~~ 115 (320)
+|+|.++..+..
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.5e-21 Score=139.62 Aligned_cols=86 Identities=23% Similarity=0.395 Sum_probs=79.8
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCC---CCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~---~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
.++++|||+|||+++|+++|+++|+.||.|.+|+|++++. ++.++|||||+|.+.++|.+|++.|++..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4578999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 020857 108 NWATKGAGN 116 (320)
Q Consensus 108 ~~a~~~~~~ 116 (320)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 67
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=1.6e-20 Score=144.03 Aligned_cols=110 Identities=23% Similarity=0.293 Sum_probs=93.8
Q ss_pred cccCcccCCCceEEEecccCCC---CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 5 SLNGRHLFGQPIKVNWAYASGQ---REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 5 ~l~g~~~~g~~i~v~~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
.+||..+.+.+........... ......+++|||+|||+++++++|+++|+.||.|.+|+|++++ +|.++|||||+
T Consensus 4 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~ 82 (124)
T 2kt5_A 4 MTGGQQMGRDPDKWQHDLFDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVH 82 (124)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEE
T ss_pred ccCcccccCCCccccccccccCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEE
Confidence 3688888887765443322221 2345668999999999999999999999999999999999998 99999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
|.+.++|.+|++.|++..+.|++|+|.++.....
T Consensus 83 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 83 FERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp ESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999999999999999987543
No 68
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=138.40 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=79.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE--------EEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 99 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~ 99 (320)
......++|||+|||+++|+++|+++|+.||.|.+ ++|++++.+|.++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566889999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCeeEEEEecc
Q 020857 100 LGSRQIRCNWAT 111 (320)
Q Consensus 100 ~~g~~l~v~~a~ 111 (320)
+.|++|+|.++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=142.48 Aligned_cols=85 Identities=32% Similarity=0.485 Sum_probs=80.1
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++|||+|||+++|+++|+++|+.||.|.+|+|+.++ +|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4457899999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020857 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
+.++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 70
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=139.01 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=80.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCC-CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
....+.++|||+|||+++|+++|+++|+.|| |.+|+|++++.+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4456789999999999999999999999999 999999999887 999999999999999999999 9999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=7.1e-21 Score=146.73 Aligned_cols=88 Identities=33% Similarity=0.466 Sum_probs=82.8
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
+..+.++++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.|++..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44567789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99987654
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=142.21 Aligned_cols=89 Identities=33% Similarity=0.492 Sum_probs=82.1
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
...+...++|||+|||+++||++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34566789999999999999999999999999999999999998999999999999999999999999998 89999999
Q ss_pred EEeccCCCCC
Q 020857 107 CNWATKGAGN 116 (320)
Q Consensus 107 v~~a~~~~~~ 116 (320)
|.++......
T Consensus 90 V~~a~~~~~~ 99 (116)
T 2cqd_A 90 VNLAYLGAKP 99 (116)
T ss_dssp EEESTTTCCC
T ss_pred EEEcccCCCc
Confidence 9999765443
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=139.42 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=80.3
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCee-EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee----
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ---- 104 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~---- 104 (320)
...+++|||+|||+++||++|+++|+.||.|. +++|++++.++.++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44678999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 020857 105 IRCNWATKGA 114 (320)
Q Consensus 105 l~v~~a~~~~ 114 (320)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 74
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=3.1e-21 Score=150.05 Aligned_cols=111 Identities=27% Similarity=0.450 Sum_probs=84.1
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|++.|+|-..+|+.- ..+.. ...+..+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+
T Consensus 20 a~~~~~g~~~~g~~~-~~~~~---~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 95 (135)
T 2lea_A 20 HMASMTGGQQMGRGS-MSYGR---PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 95 (135)
T ss_dssp ----------------CCSCC---SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEE
T ss_pred hhhhccCCCCCCCCC-CCcCC---CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEE
Confidence 677888877766542 12221 22345567899999999999999999999999999999999998899999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGN 116 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 116 (320)
|.+.++|++|++.|++..+.|++|+|.++.+....
T Consensus 96 F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 96 FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 99999999999999999999999999999875543
No 75
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.4e-20 Score=141.29 Aligned_cols=86 Identities=20% Similarity=0.400 Sum_probs=81.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...++++|||+|||.++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.|+|..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCC
Q 020857 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 76
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=142.05 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=72.1
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
++|||+|||+++|+++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 7899999999999999999999999999999999999876
Q ss_pred C
Q 020857 114 A 114 (320)
Q Consensus 114 ~ 114 (320)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=141.18 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=82.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCee--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 99 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~ 99 (320)
.+....++|||+|||+++|+++|+++|+.||.|. .|+|+.++.++.++|||||+|.+.++|.+|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 4566789999999999999999999999999999 69999998899999999999999999999999999999
Q ss_pred eCCeeEEEEeccCCCC
Q 020857 100 LGSRQIRCNWATKGAG 115 (320)
Q Consensus 100 ~~g~~l~v~~a~~~~~ 115 (320)
+.|+.|+|.++.++..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 78
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=4.6e-21 Score=161.09 Aligned_cols=109 Identities=27% Similarity=0.513 Sum_probs=97.8
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||+.|||..+.|++|++.++...... .....++|||+|||+++|+++|+++|+.||.|.+++|++|+ +.++|||||+
T Consensus 73 Ai~~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~ 149 (213)
T 4f02_A 73 ALDTMNFDVIKGKPVRIMWSQRDPSL-RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVH 149 (213)
T ss_dssp HHHHHTTCEETTEECEEEECCCCTHH-HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEE
T ss_pred HHHHhhhhhcCCcccccccccccccc-cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEE
Confidence 78899999999999999998754432 22345689999999999999999999999999999999985 5589999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
|.+.++|.+|++.|||..|.|++|.|.++.++
T Consensus 150 f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 150 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 99999999999999999999999999998764
No 79
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-20 Score=136.19 Aligned_cols=89 Identities=28% Similarity=0.447 Sum_probs=80.9
Q ss_pred CCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 26 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 26 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
........++|||+|||+++|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345567789999999999999999999999999999999999853 389999999999999999999999999999999
Q ss_pred EEEeccCCCCC
Q 020857 106 RCNWATKGAGN 116 (320)
Q Consensus 106 ~v~~a~~~~~~ 116 (320)
+|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=139.84 Aligned_cols=87 Identities=38% Similarity=0.759 Sum_probs=81.2
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhcc-CCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe-eCCeeE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQI 105 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~-~~g~~l 105 (320)
.+..++++|||+|||+++|+++|+++|+. ||.|.+|+|++++ +|.++|||||+|.+.++|.+|++.|++.. +.|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567889999999999999999999999 9999999999998 99999999999999999999999999999 999999
Q ss_pred EEEeccCCCC
Q 020857 106 RCNWATKGAG 115 (320)
Q Consensus 106 ~v~~a~~~~~ 115 (320)
+|.++.++..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999876544
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=138.58 Aligned_cols=87 Identities=25% Similarity=0.333 Sum_probs=80.6
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.....++++|||+|||+++|+++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455668899999999999999999999999999999999997 699999999999999999999999999999999999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99987543
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=137.27 Aligned_cols=84 Identities=25% Similarity=0.438 Sum_probs=78.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
..+.+.++|||+|||+++++++|+++|+.||.|.+|+|++++ ++.++|||||+|.+.++|.+|++.||+..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 455678999999999999999999999999999999999997 4999999999999999999999999999999999999
Q ss_pred EeccC
Q 020857 108 NWATK 112 (320)
Q Consensus 108 ~~a~~ 112 (320)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 98764
No 83
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=137.84 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=79.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++|+++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCC
Q 020857 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
++..+
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.83 E-value=2.1e-20 Score=134.09 Aligned_cols=82 Identities=29% Similarity=0.485 Sum_probs=76.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
..+.+.++|||+|||+++|+++|+++|++||.|.+++|++++.+|.++|||||+|.+.++|.+|+ .+++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999989999999999999999999999 55888999999999
Q ss_pred Eec
Q 020857 108 NWA 110 (320)
Q Consensus 108 ~~a 110 (320)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 85
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.6e-20 Score=136.20 Aligned_cols=90 Identities=23% Similarity=0.366 Sum_probs=81.7
Q ss_pred CCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 25 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 25 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
..+....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++ ++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 344566778999999999999999999999999999999999999899999999999999999999997 477899999
Q ss_pred EEEEeccCCCCC
Q 020857 105 IRCNWATKGAGN 116 (320)
Q Consensus 105 l~v~~a~~~~~~ 116 (320)
|.|.++.++...
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999876543
No 86
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=145.50 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=82.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+...++|||+|||.++||++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 020857 109 WATKGAGN 116 (320)
Q Consensus 109 ~a~~~~~~ 116 (320)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-21 Score=141.62 Aligned_cols=86 Identities=28% Similarity=0.534 Sum_probs=80.7
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+...++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020857 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
+.+...
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987543
No 88
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=136.53 Aligned_cols=87 Identities=25% Similarity=0.543 Sum_probs=79.4
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.......++|||+|||+++|+++|+++|+.||.|.+|+|++++. .++|||||+|.+.++|.+|++.|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 34566789999999999999999999999999999999999853 3799999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987654
No 89
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=139.81 Aligned_cols=89 Identities=29% Similarity=0.388 Sum_probs=82.3
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
...+.+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999988 99999999999
Q ss_pred EEeccCCCCC
Q 020857 107 CNWATKGAGN 116 (320)
Q Consensus 107 v~~a~~~~~~ 116 (320)
|.++.++...
T Consensus 89 V~~a~~~~~~ 98 (105)
T 2dh8_A 89 PKPCTPRGMQ 98 (105)
T ss_dssp CCCSCCSSCC
T ss_pred EEEccCCCCC
Confidence 9998876543
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=3.5e-20 Score=138.27 Aligned_cols=83 Identities=27% Similarity=0.365 Sum_probs=79.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|.+|+|++++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 455678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred Eecc
Q 020857 108 NWAT 111 (320)
Q Consensus 108 ~~a~ 111 (320)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 91
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.83 E-value=2.5e-20 Score=154.18 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=93.8
Q ss_pred hhccccCcccCCCceEEEecccCCCCc---CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 78 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~---~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a 78 (320)
||+. ++..|.|++|+|.++.+..... .....++|||+|||+++|+++|+++|+.||.|.+++|++++.+|.++|||
T Consensus 71 A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~a 149 (196)
T 1l3k_A 71 AMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFA 149 (196)
T ss_dssp HHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEE
T ss_pred HHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceE
Confidence 5554 8999999999999997655432 23456899999999999999999999999999999999998899999999
Q ss_pred EEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCC
Q 020857 79 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNN 117 (320)
Q Consensus 79 fV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~ 117 (320)
||+|.+.++|.+|++. ++..+.|+.|.|.++.++....
T Consensus 150 fV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 150 FVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9999999999999965 8999999999999998765543
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=137.89 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC--CCeeCCeeEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~--~~~~~g~~l~ 106 (320)
.+.++++|||+|||+++||++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|+ +..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999999865 6899999999999999999886 4789999999
Q ss_pred EEeccCCCCC
Q 020857 107 CNWATKGAGN 116 (320)
Q Consensus 107 v~~a~~~~~~ 116 (320)
|.|+..+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999875443
No 93
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=8.4e-21 Score=146.97 Aligned_cols=87 Identities=21% Similarity=0.375 Sum_probs=81.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE--EEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCC----eeC
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLG 101 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~----~~~ 101 (320)
..+..+++|||+|||+++||++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.||+. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 44567889999999999999999999999999976 99999999999999999999999 999999999999 999
Q ss_pred CeeEEEEeccCCCC
Q 020857 102 SRQIRCNWATKGAG 115 (320)
Q Consensus 102 g~~l~v~~a~~~~~ 115 (320)
|++|+|.++.+...
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987543
No 94
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-20 Score=139.22 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+...++|||+|||+++|+++|+++|+.||.|.+|+|++|+. |.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999999986 9999999999999999999997 89999999999999
Q ss_pred eccC
Q 020857 109 WATK 112 (320)
Q Consensus 109 ~a~~ 112 (320)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8754
No 95
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=2e-20 Score=152.03 Aligned_cols=105 Identities=19% Similarity=0.376 Sum_probs=94.1
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
|| .|||..|.|++|+|.++.+... ......++|||+|||.++|+++|+++|+.||.|..+ ..++.++|||||+
T Consensus 70 A~-~l~g~~~~g~~l~v~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~ 142 (175)
T 1fje_B 70 AL-ELTGLKVFGNEIKLEKPKGRDS-KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIE 142 (175)
T ss_dssp HH-HGGGEEETTEEEEEECCCCSSC-STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEE
T ss_pred HH-hcCCCEeCCeEEEEecCCCccc-cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEE
Confidence 67 4999999999999999986543 334567899999999999999999999999988765 3589999999999
Q ss_pred ecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 82 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 82 f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
|.+.++|.+|++.|||..+.|++|+|.|+.++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999765
No 96
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=2.7e-20 Score=139.33 Aligned_cols=87 Identities=30% Similarity=0.388 Sum_probs=76.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
+.+.+.++|||+|||+++|+++|+++|+.||.|.+|+|++++.+|.++|||||+|.+.++|.+|++.+ +..+.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 45667899999999999999999999999999999999999989999999999999999999999776 58999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987543
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1.7e-20 Score=150.04 Aligned_cols=87 Identities=31% Similarity=0.495 Sum_probs=81.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++|+.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.++..
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987543
No 98
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=149.04 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=77.6
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCC--CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 020857 110 ATKG 113 (320)
Q Consensus 110 a~~~ 113 (320)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8753
No 99
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.4e-20 Score=134.37 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=77.4
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
..++|||+|||+++|+++|+++|+.||.|.++++++++.++.++|||||+|.+.++|.+|+ .+++..+.|++|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3679999999999999999999999999999999999889999999999999999999999 999999999999999987
Q ss_pred CC
Q 020857 112 KG 113 (320)
Q Consensus 112 ~~ 113 (320)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=133.87 Aligned_cols=83 Identities=19% Similarity=0.360 Sum_probs=77.6
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCC-ccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR-SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~-~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..++|||+|||.++|+++|+++|+.||.|.+++|+.++.++. ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 9999999999999999999999999999999999998
Q ss_pred cCCC
Q 020857 111 TKGA 114 (320)
Q Consensus 111 ~~~~ 114 (320)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-21 Score=136.53 Aligned_cols=82 Identities=23% Similarity=0.444 Sum_probs=77.2
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+.++++|||+|||+++++++|+++|+.||.|.+++|++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999998876
Q ss_pred cc
Q 020857 110 AT 111 (320)
Q Consensus 110 a~ 111 (320)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 102
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-20 Score=134.10 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=76.3
Q ss_pred CCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh--CCCeeC
Q 020857 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL--TGKWLG 101 (320)
Q Consensus 24 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l--~~~~~~ 101 (320)
...+....++++|||+|||+++||++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|++.| ++..+.
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334556677899999999999999999999999999999999864 689999999999999999976 577899
Q ss_pred CeeEEEEeccCCCCC
Q 020857 102 SRQIRCNWATKGAGN 116 (320)
Q Consensus 102 g~~l~v~~a~~~~~~ 116 (320)
|++|+|.|+..+...
T Consensus 80 Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 80 NQPIYIQYSNHKELK 94 (101)
T ss_dssp TEECEEEECSCSSCC
T ss_pred CcEEEEEEcCcccCc
Confidence 999999999875543
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=3.9e-20 Score=134.09 Aligned_cols=84 Identities=27% Similarity=0.373 Sum_probs=78.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..+.++|||+|||+++|+++|+++|+.||.|.+++|+++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999985 799999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020857 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987543
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.6e-20 Score=137.03 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=76.4
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++|||+|||+++|+++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++.||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ccC
Q 020857 110 ATK 112 (320)
Q Consensus 110 a~~ 112 (320)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 105
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4e-20 Score=138.42 Aligned_cols=88 Identities=28% Similarity=0.442 Sum_probs=79.3
Q ss_pred CCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 24 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 24 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+...+.....++|||+|||.++|+++|+++|+.||.|.+++|++++ +.++|||||+|.+.++|.+|++.|+|..+.|+
T Consensus 20 S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 20 HMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp --CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3344556678999999999999999999999999999999999985 45999999999999999999999999999999
Q ss_pred eEEEEeccCC
Q 020857 104 QIRCNWATKG 113 (320)
Q Consensus 104 ~l~v~~a~~~ 113 (320)
+|+|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998765
No 106
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.9e-20 Score=141.70 Aligned_cols=89 Identities=21% Similarity=0.420 Sum_probs=82.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....++++|||+|||+++|+++|+++|+.||.|.+|.|+.++.++.++|||||+|.+.++|.+|++.||+..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 020857 108 NWATKGAGN 116 (320)
Q Consensus 108 ~~a~~~~~~ 116 (320)
.++..+...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999766543
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=131.61 Aligned_cols=83 Identities=17% Similarity=0.343 Sum_probs=77.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++|+++|+++|+.| .|.+|+|+++ .+|+++|||||+|.+.++|.+|++ ||+..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 689999999999999999999998 99999999999999
Q ss_pred eccCCC
Q 020857 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 988754
No 108
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.8e-20 Score=133.60 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=76.4
Q ss_pred CCCceeEEEcCCCccCcHHHHH----HHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
....++|||+|||+++++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3457899999999999999999 99999999999999998754 8999999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 020857 106 RCNWATKGAG 115 (320)
Q Consensus 106 ~v~~a~~~~~ 115 (320)
+|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 109
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=6.1e-20 Score=137.71 Aligned_cols=97 Identities=22% Similarity=0.396 Sum_probs=87.0
Q ss_pred cCCCceEEEecccCCCCcCCCCceeEEEcCCCcc-CcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHH
Q 020857 11 LFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 89 (320)
Q Consensus 11 ~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 89 (320)
..|.+|++..+...........+++|||+|||++ +|+++|+++|++||.|.+|+| ++|||||+|.+.++|.
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3578888888877766666777899999999999 999999999999999999998 5689999999999999
Q ss_pred HHHHHhCCCeeCCeeEEEEeccCCCC
Q 020857 90 SAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 90 ~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
+|++.|++..+.|+.|+|.++..+..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999975443
No 110
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=8.7e-20 Score=145.62 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=82.0
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+.++|||+|||+++||++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
|+.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987544
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.7e-20 Score=130.63 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=72.1
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999996 9999999999999875
No 112
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=137.30 Aligned_cols=87 Identities=22% Similarity=0.346 Sum_probs=79.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCC-eeEEEEe-ecCCCCCccceEEEEecCHHHHHHHHHHhC--CCeeCCeeE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQI 105 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~-~~~~~g~~~G~afV~f~~~~~A~~A~~~l~--~~~~~g~~l 105 (320)
+.++++|||+|||+++|+++|+++|+.||. |.++.++ .++.+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEeccCCCCC
Q 020857 106 RCNWATKGAGN 116 (320)
Q Consensus 106 ~v~~a~~~~~~ 116 (320)
+|.|+.++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 113
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=137.72 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=75.1
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecC-CCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
......++|||+|||+++|+++|+++|+.|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|+|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455689999999999999999999999999 9999999998 58999999999999999999999 9999999999999
Q ss_pred EEeccCC
Q 020857 107 CNWATKG 113 (320)
Q Consensus 107 v~~a~~~ 113 (320)
|.++.++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998764
No 114
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=139.51 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=79.2
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCe-eEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
...+.+.++|||+|||+++|+++|+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|.+|++. ++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3456678999999999999999999999999999 899999998 999999999999999999999966 9999999999
Q ss_pred EEEeccCCC
Q 020857 106 RCNWATKGA 114 (320)
Q Consensus 106 ~v~~a~~~~ 114 (320)
.|.++.++.
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999987643
No 115
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=4.4e-20 Score=129.47 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=69.3
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|.+|++.||+..+.|++|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 66899999999999999999999999999999964 68999999999999999999999999999999999884
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-20 Score=134.66 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=73.5
Q ss_pred CcCCCCceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCC--CeeCCe
Q 020857 27 REDTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--KWLGSR 103 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~--~~~~g~ 103 (320)
+....++++|||+|||+ ++||+||+++|++||.|.+|+|++++ |||||+|.+.++|.+|++.|++ ..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 33455789999999999 99999999999999999999998653 7999999999999999999875 459999
Q ss_pred eEEEEeccCCCC
Q 020857 104 QIRCNWATKGAG 115 (320)
Q Consensus 104 ~l~v~~a~~~~~ 115 (320)
+|+|.++.....
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 1x4d_A 83 PVRVHLSQKYKR 94 (102)
T ss_dssp ECEEEEECCCTT
T ss_pred EEEEEECCCCCC
Confidence 999999986543
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=136.56 Aligned_cols=85 Identities=18% Similarity=0.482 Sum_probs=79.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee-------
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL------- 100 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~------- 100 (320)
..+.+.++|||+|||+++|+++|+++|+.||.|.+++|++++ ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345567899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred -CCeeEEEEeccCC
Q 020857 101 -GSRQIRCNWATKG 113 (320)
Q Consensus 101 -~g~~l~v~~a~~~ 113 (320)
.+++|.|.|+.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 6888999998854
No 118
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=133.74 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=74.6
Q ss_pred CCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCC--CeeCC
Q 020857 25 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG--KWLGS 102 (320)
Q Consensus 25 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~--~~~~g 102 (320)
..+....++++|||+|||+++||++|+++|++||.|.+|.|+++ ||||||+|.+.++|.+|++.|++ ..+.|
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34455667899999999999999999999999999999999754 68999999999999999998865 45899
Q ss_pred eeEEEEeccCCCC
Q 020857 103 RQIRCNWATKGAG 115 (320)
Q Consensus 103 ~~l~v~~a~~~~~ 115 (320)
++|+|.|+..+..
T Consensus 81 r~l~V~~a~~~~~ 93 (104)
T 1wex_A 81 QQAFFNYSTSKRI 93 (104)
T ss_dssp SBCEEEECSSSSC
T ss_pred EEEEEEEccCccc
Confidence 9999999987544
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1e-19 Score=146.59 Aligned_cols=86 Identities=20% Similarity=0.395 Sum_probs=80.1
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..++++|||+|||+++|+++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|.+|++.|||..|.|++|.|.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020857 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
+.++..
T Consensus 149 a~~~~~ 154 (165)
T 1rk8_A 149 CFVKGP 154 (165)
T ss_dssp SEECC-
T ss_pred ecCCCC
Confidence 987544
No 120
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.81 E-value=1.1e-19 Score=147.53 Aligned_cols=107 Identities=23% Similarity=0.366 Sum_probs=94.7
Q ss_pred hhccccCcccC---CCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE
Q 020857 2 AILSLNGRHLF---GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 78 (320)
Q Consensus 2 ai~~l~g~~~~---g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a 78 (320)
|++.|||..+. +++|.+.+..+.. ......++|||+|||.++|+++|+++|++||.|.++++++++ +|.++|||
T Consensus 63 A~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~a 139 (175)
T 3nmr_A 63 AQNALHNMKVLPGMHHPIQMKPADSEK--NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCA 139 (175)
T ss_dssp HHHHHTTTCCCTTCSSCCEEEECGGGC--CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEE
T ss_pred HHHHhcCcEEccCCccceEEccccccc--cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEE
Confidence 78889998877 5788888876554 334567899999999999999999999999999999999996 69999999
Q ss_pred EEEecCHHHHHHHHHHhCCCeeC---CeeEEEEecc
Q 020857 79 FVSFRNQQDAQSAINDLTGKWLG---SRQIRCNWAT 111 (320)
Q Consensus 79 fV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~~a~ 111 (320)
||+|.+.++|.+|++.|||..+. +++|.|.|++
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 140 FVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999998775 4999999874
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5e-20 Score=139.53 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=79.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
+...++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|++. ++..+.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 34468999999999999999999999999999999999998999999999999999999999977 99999999999999
Q ss_pred ccCCCCC
Q 020857 110 ATKGAGN 116 (320)
Q Consensus 110 a~~~~~~ 116 (320)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9876543
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=8.8e-20 Score=132.66 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=72.6
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe--eCCeeE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW--LGSRQI 105 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~--~~g~~l 105 (320)
....++++|||+|||.++||++|+++|++||.|.++++++ .||||||+|.+.++|.+|++.|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456788999999999999999999999999999999985 35899999999999999999998875 789999
Q ss_pred EEEeccCCC
Q 020857 106 RCNWATKGA 114 (320)
Q Consensus 106 ~v~~a~~~~ 114 (320)
+|.|+.++.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998653
No 123
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=130.49 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=73.2
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
++|||+|||+++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999988 9999999999986
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=136.13 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=74.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC--CCeeCCeeE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQI 105 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~--~~~~~g~~l 105 (320)
....++++|||+|||+++||++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.|+ +..+.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34566889999999999999999999999999999999875 6899999999999999999887 468999999
Q ss_pred EEEeccCCCCC
Q 020857 106 RCNWATKGAGN 116 (320)
Q Consensus 106 ~v~~a~~~~~~ 116 (320)
+|.++..+...
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999875543
No 125
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.8e-20 Score=135.30 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++||+||+++|+.||.+ +|+|++|+ +++++|||||+|.+.++|++|+ .+|+..+.||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 44567899999999999999999999999954 99999997 8999999999999999999999 689999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.....
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 8876543
No 126
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=137.01 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCCCceeEEEcCCCccCcHHHHH---HHhccCCCeeEEEEeecCCCC---CccceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQKTG---RSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~i~~~~~~g---~~~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
.....++|||+|||++++|++|+ ++|++||.|.+|+|++++.++ .++|||||+|.+.++|.+|++.||+..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34457899999999999999999 999999999999999987654 566999999999999999999999999999
Q ss_pred eeEEEEeccCCC
Q 020857 103 RQIRCNWATKGA 114 (320)
Q Consensus 103 ~~l~v~~a~~~~ 114 (320)
++|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=134.00 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=77.6
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE-EEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.+....++|||+|||+++||++|+++|+.||.|.+ |+|+.+ .+|+++|||||+|.+.++|.+|++. ++..+.||.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34556789999999999999999999999999987 889988 6899999999999999999999976 99999999999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99887643
No 128
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=133.53 Aligned_cols=85 Identities=22% Similarity=0.419 Sum_probs=77.2
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
..+.+.++|||+|||+++|+++|+++|+.||.|.+|+|.. ++.++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3455678999999999999999999999999999999964 4568999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99977543
No 129
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=132.69 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=72.6
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCC--CCcccccCeEeEEEec
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKCSWG 230 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~~~~g~~l~v~~a 230 (320)
+.++|||+|||+++++++|+++|++|| .|.++++.++||||||+|.+.++|..|++.+++ . .+.|++|+|.|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCC---EETTEECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEEEEc
Confidence 348999999999999999999999999 999999999999999999999999999998864 6 899999999999
Q ss_pred CCCCCC
Q 020857 231 SKPTPP 236 (320)
Q Consensus 231 ~~~~~~ 236 (320)
+.+...
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 766443
No 130
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=132.08 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=76.9
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.+.+.+.++|||+|||+++|+++|+++|+.||.| +++++ .++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456678999999999999999999999999977 56776 5899999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999987644
No 131
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=139.26 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
...++|||+|||+++|+++|+++|+.||.|.+|+|++++.++.++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999989999999999999999999999 99999999999999998
Q ss_pred cCC
Q 020857 111 TKG 113 (320)
Q Consensus 111 ~~~ 113 (320)
..+
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=1.6e-20 Score=135.63 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=74.3
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
++|||+|||.++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.+ |.+|++.|||..+.|++|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999999875
Q ss_pred CC
Q 020857 114 AG 115 (320)
Q Consensus 114 ~~ 115 (320)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 133
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=141.48 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=78.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||.++|+++|+++|+.||.|.+++|++++.++.++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eec
Q 020857 108 NWA 110 (320)
Q Consensus 108 ~~a 110 (320)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 134
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=1e-19 Score=138.06 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=77.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCC---eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
.....++|||+|||+++||++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|.+|++ +|+..+.|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4456789999999999999999999999999 89999999975 9999999999999999999997 99999999999
Q ss_pred EEEeccCC
Q 020857 106 RCNWATKG 113 (320)
Q Consensus 106 ~v~~a~~~ 113 (320)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998654
No 135
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.80 E-value=8.4e-20 Score=152.16 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=90.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCc----------------------------------CCCCceeEEEcCCCccCcH
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQRE----------------------------------DTSGHFNIFVGDLSPEVTD 47 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~----------------------------------~~~~~~~l~V~nLp~~~te 47 (320)
||+.|||..|.|++|+|.+++.....+ ...++++|||+|||+++||
T Consensus 58 Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~ 137 (205)
T 3tyt_A 58 AITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE 137 (205)
T ss_dssp HHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCH
T ss_pred HHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCH
Confidence 889999999999999999986432100 0124568999999999999
Q ss_pred HHHHHHhccCCCe--eEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe----eEEEEec
Q 020857 48 ATLFACFSVYPSC--SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR----QIRCNWA 110 (320)
Q Consensus 48 ~~l~~~F~~~G~i--~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~----~l~v~~a 110 (320)
++|+++|++||.| .+++++.++ +..+|||||+|.+.++|.+|+..|||..+.|+ ++.|.++
T Consensus 138 ~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 138 ENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999 899998874 56679999999999999999999999999776 5666654
No 136
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=8.1e-20 Score=141.54 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=77.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCC---eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
......++|||+|||+++||++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|.+|++ +|+..+.||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34556789999999999999999999999999 89999999986 9999999999999999999997 9999999999
Q ss_pred EEEEeccCC
Q 020857 105 IRCNWATKG 113 (320)
Q Consensus 105 l~v~~a~~~ 113 (320)
|.|.++..+
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999988643
No 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=131.54 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=78.3
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.....+.++|||+|||+++|+++|+++|+.|+ +++++.++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44566789999999999999999999999773 688888988999999999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987654
No 138
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=130.12 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCccc--ccCeEeEE
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSY--LFGKQMKC 227 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~--~~g~~l~v 227 (320)
..+++++|||+|||.++|+++|+++|++|| .|.++++.++||+|||+|.+.++|..|++.|++. . +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~---~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMPKKRQALVEFEDVLGACNAVNYAADN---QIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS---CEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCC---CceeCCcEEEE
Confidence 344568999999999999999999999999 9999999999999999999999999999999987 5 78999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
+|++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997653
No 139
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=134.10 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCCceeEEEcCCCccC------cHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020857 29 DTSGHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
.+..+++|||+|||+++ |+++|+++|++||.|.+|+|++ .+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44557899999999999 8899999999999999999983 589999999999999999999999999999999
Q ss_pred e-eEEEEeccCCC
Q 020857 103 R-QIRCNWATKGA 114 (320)
Q Consensus 103 ~-~l~v~~a~~~~ 114 (320)
+ +|+|.++....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999987543
No 140
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=2.7e-20 Score=150.01 Aligned_cols=102 Identities=27% Similarity=0.391 Sum_probs=92.5
Q ss_pred CcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHH
Q 020857 8 GRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 87 (320)
Q Consensus 8 g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 87 (320)
+..+.|++|.+.++.++. .....++|||+|||.++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++
T Consensus 65 ~~~~~g~~i~v~~~~~~~---~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 65 QHILDGKVIDPKRAIPRD---EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CCEETTEECCCEECCCHH---HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred ccccCCeEcccccccchh---hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 577899999999886543 23456799999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 88 AQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 88 A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
|.+|++ +++..+.|++|.|.++.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999996 8999999999999999764
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=133.74 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
....++|||+|||+++||+||+++|+.| .|.+|+|++|+ +|+++|||||+|.+.++|.+|+ .+|+..+.||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999 89999999997 5999999999999999999999 7999999999999988
Q ss_pred ccC
Q 020857 110 ATK 112 (320)
Q Consensus 110 a~~ 112 (320)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-20 Score=140.58 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=77.0
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++||++|+++|+.||.|.++.++.+..+|+++|||||+|.+.++|.+|++ +|+..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999986677776799999999999999999999998 99999999999999
Q ss_pred eccCC
Q 020857 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 143
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=137.26 Aligned_cols=83 Identities=18% Similarity=0.237 Sum_probs=75.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHH----HHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
+..++++|||+|||+++++++|+ ++|++||.|.+|.+. .++.++|||||+|.+.++|..|++.|||..+.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 45567899999999999999876 699999999998875 36889999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 020857 105 IRCNWATKGA 114 (320)
Q Consensus 105 l~v~~a~~~~ 114 (320)
|+|.|+..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997654
No 144
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=126.80 Aligned_cols=80 Identities=23% Similarity=0.440 Sum_probs=73.8
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+.+.++|||+|||+++|+++|+++|+.||.|.+++++ +|||||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999997 5799999999999999999999999999999999
Q ss_pred eccCCCCC
Q 020857 109 WATKGAGN 116 (320)
Q Consensus 109 ~a~~~~~~ 116 (320)
++.++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 145
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.79 E-value=4.1e-19 Score=155.52 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=70.6
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEec
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWA 110 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a 110 (320)
++++|||+|||.++|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 56889999999999999999999999999999998664 589999999999999999999999999 999999998
Q ss_pred c
Q 020857 111 T 111 (320)
Q Consensus 111 ~ 111 (320)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 146
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=130.43 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=75.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC-----
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS----- 102 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g----- 102 (320)
......++|||+|||+++|+++|+++|+.||+|.+|+|+.+ |||||+|.+.++|++|++.||+..+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34456889999999999999999999999999999999876 799999999999999999999999999
Q ss_pred eeEEEEeccCCCCC
Q 020857 103 RQIRCNWATKGAGN 116 (320)
Q Consensus 103 ~~l~v~~a~~~~~~ 116 (320)
+.|+|.++.++...
T Consensus 83 ~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 83 AYIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEEESSCCSCC
T ss_pred eEEEEEeCCCCCCC
Confidence 99999999875543
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=132.40 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=73.4
Q ss_pred cCCCCceeEEEcCCCcc-CcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC--CCeeCCee
Q 020857 28 EDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQ 104 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~--~~~~~g~~ 104 (320)
....++++|||+|||++ +||++|+++|++||.|.+|+|++ +||||||+|.+.++|.+|++.|+ +..+.|++
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34667899999999998 99999999999999999999974 46899999999999999999885 45699999
Q ss_pred EEEEeccCCCCC
Q 020857 105 IRCNWATKGAGN 116 (320)
Q Consensus 105 l~v~~a~~~~~~ 116 (320)
|+|.++..+...
T Consensus 94 l~V~~a~~~~~~ 105 (112)
T 1x4f_A 94 VKVDLSEKYKKL 105 (112)
T ss_dssp CEEEEECSCSSS
T ss_pred EEEEECcccccc
Confidence 999999775543
No 148
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=129.87 Aligned_cols=79 Identities=19% Similarity=0.271 Sum_probs=71.8
Q ss_pred cceEEEECCCCc-cCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 153 QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 153 ~~~~l~V~nl~~-~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
+.++|||+|||+ ++++++|+++|++|| .|.++.+.+++|+|||+|.+.++|..|++.||+. ...+.|++|+|.|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~-~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--VISNHLILNKINEAFIEMATTEDAQAAVDYYTTT-PALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS--CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHS-CCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCC-CceECCcEEEEEECC
Confidence 458999999999 999999999999999 9999999999999999999999999999998864 005999999999998
Q ss_pred CCC
Q 020857 232 KPT 234 (320)
Q Consensus 232 ~~~ 234 (320)
...
T Consensus 91 ~~~ 93 (102)
T 1x4d_A 91 KYK 93 (102)
T ss_dssp CCT
T ss_pred CCC
Confidence 644
No 149
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=129.31 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=75.4
Q ss_pred CcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 27 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.....+.++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344566789999999999999999999999999999999854 68999999999999999999999999999999
Q ss_pred EEeccCCCC
Q 020857 107 CNWATKGAG 115 (320)
Q Consensus 107 v~~a~~~~~ 115 (320)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpj_A 83 VRFACHSAS 91 (99)
T ss_dssp EEESSCCSC
T ss_pred EEEcCCCCC
Confidence 999987543
No 150
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-20 Score=137.02 Aligned_cols=85 Identities=29% Similarity=0.491 Sum_probs=77.6
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++|+++|+++|+.||.|.+ .++.++.+|.++|||||+|.+.++|.+|++ |++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456889999999999999999999999999988 777777789999999999999999999998 99999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9977543
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=128.24 Aligned_cols=80 Identities=24% Similarity=0.423 Sum_probs=73.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC--CeeEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG--SRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~--g~~l~ 106 (320)
...++++|||+|||+++|+++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.||+..+. |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3445789999999999999999999999999999999754 689999999999999999999999999 99999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.++.++.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998754
No 152
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=128.21 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
..++.++|||+|||+++++++|+++|++|| .|.++.+.++||||||+|.+.++|.+|++.|++.. ..+.|++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~-~~i~Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPFKRQALVEFENIDSAKECVTFAADVP-VYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSC-CBSSSSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCC-ceECCEEEEEEE
Confidence 345568999999999999999999999999 99999999999999999999999999999886540 059999999999
Q ss_pred cCCCCC
Q 020857 230 GSKPTP 235 (320)
Q Consensus 230 a~~~~~ 235 (320)
++.+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 986543
No 153
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=128.25 Aligned_cols=73 Identities=16% Similarity=0.284 Sum_probs=68.3
Q ss_pred ceeEEEcCCCccC------cHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe-eE
Q 020857 33 HFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QI 105 (320)
Q Consensus 33 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~-~l 105 (320)
+++|||+|||.++ |+++|+++|++||.|.+++|++ .+|.++|||||+|.+.++|.+|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4689999999999 7899999999999999999883 5899999999999999999999999999999999 88
Q ss_pred EE
Q 020857 106 RC 107 (320)
Q Consensus 106 ~v 107 (320)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 154
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.1e-19 Score=125.14 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=72.0
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh-CCCeeCCeeEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l-~~~~~~g~~l~ 106 (320)
..+...++|||+|||.++|+++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.| ++..+.|++|+
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 44566889999999999999999999999999999999864 689999999999999999989 99999999999
Q ss_pred EEecc
Q 020857 107 CNWAT 111 (320)
Q Consensus 107 v~~a~ 111 (320)
|.|+.
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99873
No 155
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=129.79 Aligned_cols=74 Identities=35% Similarity=0.484 Sum_probs=69.4
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++|||+|||.++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~gr~l~V 93 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL---RLQSKTIKV 93 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC---EECCEEEEE
Confidence 37899999999999999999999999 9999999764 689999999999999999999999 999999999
Q ss_pred EecCC
Q 020857 228 SWGSK 232 (320)
Q Consensus 228 ~~a~~ 232 (320)
+|+++
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99864
No 156
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=3.6e-19 Score=132.89 Aligned_cols=80 Identities=13% Similarity=0.065 Sum_probs=72.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCC-CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
+...++|||+|||+++|+++|+++|+.|| +|..++|.. +.++|||||+|.+.++|++|++.|||..+.|++|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 33578999999999999999999999999 999998853 3488999999999999999999999999999999999
Q ss_pred eccCC
Q 020857 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
++..+
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 157
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=135.16 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=77.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCC---eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
......++|||+|||+++|+++|+++|+.||. |.+|+|++++. |+++|||||+|.+.++|.+|++ +++..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34556789999999999999999999999988 89999999986 9999999999999999999997 9999999999
Q ss_pred EEEEeccCC
Q 020857 105 IRCNWATKG 113 (320)
Q Consensus 105 l~v~~a~~~ 113 (320)
|.|.++.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988653
No 158
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=9.4e-20 Score=126.82 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=71.4
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
+|||+|||+++|+++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999899999999999999999999996 5889999999999875
No 159
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-19 Score=136.06 Aligned_cols=87 Identities=22% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...++++|||+|||+++|+++|+++|+.||.|.++.+..+..++.++|||||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999544333333378999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987654
No 160
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3.7e-19 Score=130.25 Aligned_cols=83 Identities=23% Similarity=0.373 Sum_probs=75.6
Q ss_pred CCCCceeEEEcCCCccCcHHHHH----HHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
+..++++|||+|||.++++++|+ ++|+.||.|.+|++++ +|.++|||||+|.+.++|.+|++.|+|..+.|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34568899999999999999999 9999999999999873 5789999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 020857 105 IRCNWATKGA 114 (320)
Q Consensus 105 l~v~~a~~~~ 114 (320)
|+|.++.++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998754
No 161
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=2.6e-19 Score=151.52 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=77.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCC--CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.++++||||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 020857 110 ATKG 113 (320)
Q Consensus 110 a~~~ 113 (320)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 162
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.78 E-value=7.3e-19 Score=145.77 Aligned_cols=107 Identities=20% Similarity=0.364 Sum_probs=93.3
Q ss_pred hhccccCcccCCCceEEEecccCCCC--------------------------------cCCCCceeEEEcCCCccCcHHH
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQR--------------------------------EDTSGHFNIFVGDLSPEVTDAT 49 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~--------------------------------~~~~~~~~l~V~nLp~~~te~~ 49 (320)
||+.|||..|.|++|+|.++...... ....++++|||+|||.++|+++
T Consensus 57 A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 136 (198)
T 1qm9_A 57 AMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED 136 (198)
T ss_dssp HHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHH
T ss_pred HHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHH
Confidence 77889999999999999998754210 0113478999999999999999
Q ss_pred HHHHhccCC-CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeccCC
Q 020857 50 LFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 113 (320)
Q Consensus 50 l~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 113 (320)
|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|++.|||..+. |++|+|.|+.++
T Consensus 137 l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 137 LKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999 9999999764 2689999999999999999999999999 999999998763
No 163
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=125.87 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=73.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHc--CCCCcccccCeEeEEEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG--NTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l--~~~~~~~~~g~~l~v~~ 229 (320)
++.++|||+|||+++++++|+++|++|| .|.++.+.+++|||||+|.+.++|..|++.| ++. .+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG--~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~---~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFG--KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP---HLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC---EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc---eECCcEEEEEE
Confidence 4558999999999999999999999999 9999999999999999999999999999987 466 79999999999
Q ss_pred cCCCCCC
Q 020857 230 GSKPTPP 236 (320)
Q Consensus 230 a~~~~~~ 236 (320)
++.+...
T Consensus 88 a~~~~~~ 94 (101)
T 2cq1_A 88 SNHKELK 94 (101)
T ss_dssp CSCSSCC
T ss_pred cCcccCc
Confidence 9866543
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=6e-19 Score=130.13 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=72.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+..+++|||+|||.++|+++|+++|+.||.|.++++. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34457899999999999999999999999999999997 357899999999999999999999999999999999
Q ss_pred eccC
Q 020857 109 WATK 112 (320)
Q Consensus 109 ~a~~ 112 (320)
|+.+
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 165
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.78 E-value=1.1e-18 Score=130.14 Aligned_cols=79 Identities=22% Similarity=0.456 Sum_probs=72.8
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
..+..+++|||+|||+++|+++|+++|+.||.|.+++++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456678999999999999999999999999999999997 689999999999999999999999999999999
Q ss_pred EeccCCC
Q 020857 108 NWATKGA 114 (320)
Q Consensus 108 ~~a~~~~ 114 (320)
.++..+.
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987754
No 166
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=130.41 Aligned_cols=81 Identities=21% Similarity=0.523 Sum_probs=75.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+...++|||+|||.++|+++|+++|+.||.|.+|+|+++ +|||||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999876 6899999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
|+.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987654
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=1.1e-18 Score=122.42 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=70.4
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
...|||+||++.+|+++|+++|.+|| .|.++++..++|||||+|.+.++|.+|++.||+. .+.|+.|+|++++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~---~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYLNQGIALCKYTTREEANKAQMALNNC---VLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE---EETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC---EECCcEEEEEECC
Confidence 36799999999999999999999999 9999999999999999999999999999999999 9999999999984
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.78 E-value=1.5e-18 Score=147.37 Aligned_cols=107 Identities=20% Similarity=0.364 Sum_probs=93.0
Q ss_pred hhccccCcccCCCceEEEecccCCCC--------------------------------cCCCCceeEEEcCCCccCcHHH
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQR--------------------------------EDTSGHFNIFVGDLSPEVTDAT 49 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~--------------------------------~~~~~~~~l~V~nLp~~~te~~ 49 (320)
||+.|||..|.|++|+|.+++..... ....++++|||+|||.++|+++
T Consensus 88 Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 167 (229)
T 2adc_A 88 AMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEED 167 (229)
T ss_dssp HHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHH
T ss_pred HHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHH
Confidence 78889999999999999998754210 0013368999999999999999
Q ss_pred HHHHhccCC-CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeccCC
Q 020857 50 LFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 113 (320)
Q Consensus 50 l~~~F~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~-g~~l~v~~a~~~ 113 (320)
|+++|++|| .|.+++++.+ .+|||||+|.+.++|.+|++.|+|..+. |++|+|.|+.++
T Consensus 168 l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 168 LKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999 9999999753 3689999999999999999999999999 999999998763
No 169
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=2.5e-19 Score=132.40 Aligned_cols=84 Identities=24% Similarity=0.444 Sum_probs=77.4
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+..+++|||+|||+++|+++|+++|+.||.|.+++|++++ +|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 34457899999999999999999999999999999999998 99999999999999999999996 9999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.++..
T Consensus 82 ~a~~~~~ 88 (102)
T 2xs2_A 82 PAIRKQN 88 (102)
T ss_dssp EEEECC-
T ss_pred ECCcCcc
Confidence 9876543
No 170
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=123.82 Aligned_cols=80 Identities=23% Similarity=0.382 Sum_probs=73.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
......++|||+|||+++|+++|+++|+.||.|.+++++++ ||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999743 9999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99987644
No 171
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-20 Score=142.01 Aligned_cols=87 Identities=29% Similarity=0.382 Sum_probs=81.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeE--------EEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
+..++++|||+|||+++|+++|+++|+.||.|.+ |+|++++.++.++|||||+|.+.++|.+|++.||+..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCeeEEEEeccCCCC
Q 020857 101 GSRQIRCNWATKGAG 115 (320)
Q Consensus 101 ~g~~l~v~~a~~~~~ 115 (320)
.|++|+|.++.++..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987643
No 172
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=7e-19 Score=128.51 Aligned_cols=83 Identities=17% Similarity=0.361 Sum_probs=74.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345568899999999999999999999999988766 247899999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99977543
No 173
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=2.8e-18 Score=126.99 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=73.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|++..+.|++|.|.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 44567899999999999999999999999999999986 3599999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 020857 109 WATKGAGNN 117 (320)
Q Consensus 109 ~a~~~~~~~ 117 (320)
++.++....
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998765443
No 174
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=130.42 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=73.2
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcC--CCCcccccCeEeEEEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKCSW 229 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~--~~~~~~~~g~~l~v~~ 229 (320)
++.++|||+|||+++++++|+++|++|| .|.++++.++||||||+|.+.++|.+|++.++ +. .+.|++|+|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG--~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~---~l~Gr~l~V~~ 103 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQF 103 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTS--CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCC---CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCc---eECCeEEEEEE
Confidence 3458999999999999999999999999 99999999999999999999999999999887 46 79999999999
Q ss_pred cCCCCCC
Q 020857 230 GSKPTPP 236 (320)
Q Consensus 230 a~~~~~~ 236 (320)
++.+...
T Consensus 104 a~~k~~~ 110 (119)
T 2ad9_A 104 SNHKELK 110 (119)
T ss_dssp CSSSSCC
T ss_pred ccCCCCC
Confidence 9866543
No 175
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.4e-18 Score=125.81 Aligned_cols=78 Identities=22% Similarity=0.392 Sum_probs=71.3
Q ss_pred cCCCCceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 28 EDTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
....++++|||+|||+ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|+|..+.|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456789999999998 99999999999999999999983 68999999999999999999999999999999
Q ss_pred EEeccCC
Q 020857 107 CNWATKG 113 (320)
Q Consensus 107 v~~a~~~ 113 (320)
|.++..+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 176
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=126.97 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
....+++|||+|||+++|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445578999999999999999999999999997 677644 588999999999999999999999999999999999
Q ss_pred eccCCC
Q 020857 109 WATKGA 114 (320)
Q Consensus 109 ~a~~~~ 114 (320)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998754
No 177
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=1.1e-17 Score=126.41 Aligned_cols=82 Identities=34% Similarity=0.652 Sum_probs=74.4
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
....++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQ 86 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC---EETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCEE
Confidence 34458999999999999999999999999 8999999876 589999999999999999999999 999999
Q ss_pred eEEEecCCCCCCC
Q 020857 225 MKCSWGSKPTPPG 237 (320)
Q Consensus 225 l~v~~a~~~~~~~ 237 (320)
|+|.|++++....
T Consensus 87 l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 87 IRTNWATRKPPAP 99 (115)
T ss_dssp CEEEESSCCCCCS
T ss_pred EEEEEccCCCCCC
Confidence 9999998765443
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.77 E-value=1.5e-18 Score=150.26 Aligned_cols=102 Identities=28% Similarity=0.411 Sum_probs=93.6
Q ss_pred hhccccCcccCCCceEEEecccCCCCcCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEE
Q 020857 2 AILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 81 (320)
Q Consensus 2 ai~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~ 81 (320)
||..|||..|.|++|+|.++.+ +++|||+|||.++|+++|+++|+.||.|.+|+|++| .+|.++|||||+
T Consensus 74 A~~~l~g~~i~g~~l~v~~a~~---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~ 143 (261)
T 3sde_A 74 AKAELDGTILKSRPLRIRFATH---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVE 143 (261)
T ss_dssp HHHHHTTCEETTEECEEEECCC---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEE
T ss_pred HHHHcCCcEECCceeEeeeccc---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEE
Confidence 7788999999999999999864 458999999999999999999999999999999999 589999999999
Q ss_pred ecCHHHHHHHHHHh-CCCeeC---CeeEEEEeccCC
Q 020857 82 FRNQQDAQSAINDL-TGKWLG---SRQIRCNWATKG 113 (320)
Q Consensus 82 f~~~~~A~~A~~~l-~~~~~~---g~~l~v~~a~~~ 113 (320)
|.+.++|.+|++.| ++..+. +++|.|.++...
T Consensus 144 f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 144 FAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred eCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999999999 555554 999999998764
No 179
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=123.52 Aligned_cols=79 Identities=28% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.+.+.++|||+|||+++|+++|+++|+.||.|.++++++ +||||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456688999999999999999999999999999999974 399999999999999999999999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 180
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=134.53 Aligned_cols=80 Identities=23% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCe----eEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSC----SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
...++|||+|||+++||+||+++|+.||.| .+|+|++|+ +|+++|||||+|.+.++|.+|++. ++..+.||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999985 689999995 899999999999999999999965 99999999999
Q ss_pred EEeccC
Q 020857 107 CNWATK 112 (320)
Q Consensus 107 v~~a~~ 112 (320)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 181
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.6e-18 Score=126.44 Aligned_cols=83 Identities=30% Similarity=0.432 Sum_probs=74.4
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
....++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAG--VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ---LLFDRPM 86 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC---EeCCCEE
Confidence 34458899999999999999999999999 9999999876 789999999999999999999999 9999999
Q ss_pred EEEecCCCCCCCC
Q 020857 226 KCSWGSKPTPPGT 238 (320)
Q Consensus 226 ~v~~a~~~~~~~~ 238 (320)
+|.|++.......
T Consensus 87 ~v~~a~~~~~~~~ 99 (114)
T 2do0_A 87 HVKMDERALPKGD 99 (114)
T ss_dssp EEEECSCCCCCSC
T ss_pred EEEEcccCCCCCC
Confidence 9999976554433
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=3.2e-19 Score=138.63 Aligned_cols=84 Identities=15% Similarity=0.201 Sum_probs=75.3
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
.....++|||+|||+++||+||+++|+.|| |.+|+|++|+. |+++|||||+|.+.++|++|+ .+|+..+.||.|.|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 77999999974 999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 020857 109 WATKGAG 115 (320)
Q Consensus 109 ~a~~~~~ 115 (320)
++.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 8876543
No 183
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.2e-18 Score=125.88 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=71.3
Q ss_pred CCCCceeEEEcCCCc-cCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 29 DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
...++++|||+|||+ ++|+++|+++|++||.|.+++|. +|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999998 99999999999999999999984 689999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99976544
No 184
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-18 Score=126.68 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=72.5
Q ss_pred CCcceEEEECCCCcc-CcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCC--CCcccccCeEeEE
Q 020857 151 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKC 227 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~--~~~~~~~g~~l~v 227 (320)
..+.++|||+|||++ +++++|+++|++|| .|.++.+.+++|||||+|.+.++|..|++.|++ . .+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKAL---WFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCC---CSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEE
Confidence 344689999999998 99999999999999 999999999999999999999999999998864 5 699999999
Q ss_pred EecCCCCC
Q 020857 228 SWGSKPTP 235 (320)
Q Consensus 228 ~~a~~~~~ 235 (320)
.|++....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99976544
No 185
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.4e-18 Score=123.19 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=72.4
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccC--CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
....+.++|||+|||+++|+++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.||+..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999988874 5699999999999999999999999999999
Q ss_pred EEEeccCCCC
Q 020857 106 RCNWATKGAG 115 (320)
Q Consensus 106 ~v~~a~~~~~ 115 (320)
+|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987543
No 186
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.76 E-value=2.6e-18 Score=139.63 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=78.6
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
...+++|||+|||+++++++|+++|+.||.|.+|.|+.++ ++.++|||||+|.+.++|.+|++.|++..+.|++|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 020857 110 ATKG 113 (320)
Q Consensus 110 a~~~ 113 (320)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8764
No 187
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-18 Score=122.93 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=73.4
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCccccc--CeEeEEEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKCSW 229 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~--g~~l~v~~ 229 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.+++|||||+|.+.++|.+|++.||+. .+. |+.|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF---PLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC---BCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC---EeCCCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999999999999999999999999999 999 99999999
Q ss_pred cCCCC
Q 020857 230 GSKPT 234 (320)
Q Consensus 230 a~~~~ 234 (320)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=129.27 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=71.9
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+++|||+|||+++|+++|+++|++||.|.+|.|++ ++|||||+|.+.++|.+|++.|||..+.|++|.|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999998864 5689999999999999999999999999999999998
Q ss_pred cCCC
Q 020857 111 TKGA 114 (320)
Q Consensus 111 ~~~~ 114 (320)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 189
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=9.7e-19 Score=133.35 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=73.7
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCee--EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
.....++|||+|||+++||++|+++|+.| .|. +|+|++|+. |+++|||||+|.+.++|.+|++ +++..+.||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999999999 676 899999975 9999999999999999999996 578999999999
Q ss_pred EEeccCC
Q 020857 107 CNWATKG 113 (320)
Q Consensus 107 v~~a~~~ 113 (320)
|.++.++
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987643
No 190
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=121.53 Aligned_cols=77 Identities=29% Similarity=0.594 Sum_probs=72.1
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHc-CCCCcccccCeEeEEE
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKCS 228 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~g~~l~v~ 228 (320)
...+.++|||+|||.++++++|+++|++|| .|.++.+.+++|+|||+|.+.++|.+|++.| ++. .+.|+.|+|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v~ 82 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL---IVNGRRLNVK 82 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC---EETTEECCEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe---eECCCEEEEE
Confidence 344558899999999999999999999999 9999999999999999999999999999999 999 9999999999
Q ss_pred ecC
Q 020857 229 WGS 231 (320)
Q Consensus 229 ~a~ 231 (320)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 191
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=124.34 Aligned_cols=80 Identities=31% Similarity=0.554 Sum_probs=74.6
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
..+.++|||+|||.++++++|+++|++|| .|.++.+.+++|||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM---PLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC---CBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---EeCCceEEEEEc
Confidence 34458999999999999999999999999 8999999999999999999999999999999999 999999999999
Q ss_pred CCCCC
Q 020857 231 SKPTP 235 (320)
Q Consensus 231 ~~~~~ 235 (320)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 77543
No 192
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=124.12 Aligned_cols=79 Identities=25% Similarity=0.408 Sum_probs=70.7
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCC-eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCC-CeeCCeeEEE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-KWLGSRQIRC 107 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~-~~~~g~~l~v 107 (320)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666663 468999999999999999999999 9999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99987543
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.8e-18 Score=129.37 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=71.1
Q ss_pred eeEEEcCC----CccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecC----HHH----HHHHHH--HhCCCe
Q 020857 34 FNIFVGDL----SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN----QQD----AQSAIN--DLTGKW 99 (320)
Q Consensus 34 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~----~~~----A~~A~~--~l~~~~ 99 (320)
.+|||+|| |+.++|++|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 433 889988 789999
Q ss_pred eCCeeEEEEecc
Q 020857 100 LGSRQIRCNWAT 111 (320)
Q Consensus 100 ~~g~~l~v~~a~ 111 (320)
|.|++|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999654
No 194
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.7e-18 Score=134.51 Aligned_cols=119 Identities=23% Similarity=0.346 Sum_probs=73.6
Q ss_pred eEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceE
Q 020857 77 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 156 (320)
Q Consensus 77 ~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (320)
+.|++|++...+..|++.+++....|+.- ..+.. .+......++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------------------------~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------------------------PPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CCSCC-----------------------------------SCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------------------------CCCCCCCCCE
Confidence 67888888999999998888765554421 11110 0111223478
Q ss_pred EEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 157 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 157 l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~---~i~g~~l~V~~a 124 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA---VLDGRELRVQMA 124 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC---CSSSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 99999999999999999999999 8999998754 689999999999999999999999 999999999999
Q ss_pred CCCCCC
Q 020857 231 SKPTPP 236 (320)
Q Consensus 231 ~~~~~~ 236 (320)
+...++
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 195
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=121.65 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=72.3
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....+.++|||+|| ++|+++|+++|++||.|.+|+|. .++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44556789999996 99999999999999999999984 46789999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.++.++..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99977644
No 196
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-17 Score=122.57 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=73.1
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
....++|||+|||.++++++|+++|++|| .|..+.+..+ +|||||+|.+.++|.+|++.||+. .+.|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYG--AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY---DYDGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEE
Confidence 34558999999999999999999999999 8999998765 689999999999999999999999 999999999
Q ss_pred EecCCCCC
Q 020857 228 SWGSKPTP 235 (320)
Q Consensus 228 ~~a~~~~~ 235 (320)
.|++....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99977543
No 197
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=124.76 Aligned_cols=78 Identities=40% Similarity=0.656 Sum_probs=73.9
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
..++|||+|||.++++++|+++|++|| .|.++++.+++|||||+|.+.++|.+|++.||+. .+.|+.|+|.|+++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG--QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT---TIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC---EETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC---EECCcEEEEEecCC
Confidence 448999999999999999999999999 9999999999999999999999999999999999 99999999999987
Q ss_pred CCC
Q 020857 233 PTP 235 (320)
Q Consensus 233 ~~~ 235 (320)
...
T Consensus 99 ~~~ 101 (109)
T 1x4g_A 99 SPD 101 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 198
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-17 Score=122.11 Aligned_cols=81 Identities=28% Similarity=0.556 Sum_probs=74.1
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
....++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR---KILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC---CcCCCeEE
Confidence 34558999999999999999999999999 9999999874 789999999999999999999999 99999999
Q ss_pred EEecCCCCCC
Q 020857 227 CSWGSKPTPP 236 (320)
Q Consensus 227 v~~a~~~~~~ 236 (320)
|.|++.+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-17 Score=121.55 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=74.2
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.....++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTS--CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEE
Confidence 334558999999999999999999999999 9999999876 789999999999999999999999 9999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|++++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999977644
No 200
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=6.3e-18 Score=121.31 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=70.4
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+++|||+|||+++||++|+++|++| .|.++++. .++|||||+|.+.++|.+|++.|||..+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356899999999999999999999999 99999884 57899999999999999999999999999999999998
Q ss_pred cCC
Q 020857 111 TKG 113 (320)
Q Consensus 111 ~~~ 113 (320)
...
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 201
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=124.96 Aligned_cols=78 Identities=19% Similarity=0.378 Sum_probs=68.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCc-ccccCeEeEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQS-SYLFGKQMKC 227 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~-~~~~g~~l~v 227 (320)
.+|||+|||+++|+++|+++|++||...+.+|++.++ +|||||+|.+.++|.+|++.||+... ..++|++|+|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 6899999999999999999999999656778888765 78999999999999999999998711 1389999999
Q ss_pred EecCC
Q 020857 228 SWGSK 232 (320)
Q Consensus 228 ~~a~~ 232 (320)
+||++
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99975
No 202
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=118.99 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=71.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+. +|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG--KVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY---KLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS--CEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC---ccCCcEEEEEECC
Confidence 3458999999999999999999999999 99999998 689999999999999999999999 9999999999997
Q ss_pred CCCC
Q 020857 232 KPTP 235 (320)
Q Consensus 232 ~~~~ 235 (320)
++..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 203
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=123.76 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=72.8
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEE-EEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 108 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 108 (320)
...+++|||+|||+++|+++|+++|+.||.|.++ .|+.++.++ .|||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4457899999999999999999999999999999 588776544 39999999999999999999999999999999
Q ss_pred eccCC
Q 020857 109 WATKG 113 (320)
Q Consensus 109 ~a~~~ 113 (320)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 204
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=121.44 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=69.9
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
...++|||+|||+++|+++|+++|+.||.|.+| +.++.++. ||||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456799999999999999999999999999987 55655665 99999999999999998 9999999999999987
Q ss_pred cCCC
Q 020857 111 TKGA 114 (320)
Q Consensus 111 ~~~~ 114 (320)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 205
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=120.71 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=72.9
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 81 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYG--PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ---VFQGRMLH 81 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE---ESSSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC---EECCcEEE
Confidence 448999999999999999999999999 9999999865 599999999999999999999999 99999999
Q ss_pred EEecCCCCCC
Q 020857 227 CSWGSKPTPP 236 (320)
Q Consensus 227 v~~a~~~~~~ 236 (320)
|.|++++...
T Consensus 82 V~~a~~~~~~ 91 (99)
T 1whw_A 82 VLPSTIKKEA 91 (99)
T ss_dssp EEECCCCSTT
T ss_pred EEEcCCCccc
Confidence 9999876543
No 206
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.3e-18 Score=126.28 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCCCceeEEE--cCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee-----C
Q 020857 29 DTSGHFNIFV--GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-----G 101 (320)
Q Consensus 29 ~~~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~-----~ 101 (320)
...++++||| +||++++||++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4456789999 77999999999999999999999998863 368999999999999999999999988 7
Q ss_pred CeeEEEEeccCCC
Q 020857 102 SRQIRCNWATKGA 114 (320)
Q Consensus 102 g~~l~v~~a~~~~ 114 (320)
|++|.|.++..-+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 9999999987543
No 207
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=121.34 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=72.0
Q ss_pred cceEEEECCCCccCcHHHHH----HHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~----~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
..++|||+|||.++++++|+ ++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~---~~~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY---KIGSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 34899999999999999999 9999999 9999999976 899999999999999999999999 9999999
Q ss_pred EEEecCCCC
Q 020857 226 KCSWGSKPT 234 (320)
Q Consensus 226 ~v~~a~~~~ 234 (320)
+|+|+++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 208
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=8.5e-18 Score=132.89 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC--eeEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS--RQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g--~~l~ 106 (320)
.++.-.+|||+||++++||++|+++|++||+|++|+|+.++ ++|||||+|.+.++|++|++.|||..|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34556789999999999999999999999999999997542 57899999999999999999999999965 9999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.|+.++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998764
No 209
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=136.58 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEE--E---eecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR--V---MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--i---~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
...++++|||+|||+++|+++|+++|+.||.|.++. + ++...+|.++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 456788999999999999999999999999997741 1 11124789999999999999999999999999999999
Q ss_pred eEEEEeccCCC
Q 020857 104 QIRCNWATKGA 114 (320)
Q Consensus 104 ~l~v~~a~~~~ 114 (320)
+|.|.++....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 210
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-17 Score=121.33 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=73.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccC-----eEeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-----KQMK 226 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g-----~~l~ 226 (320)
...++|||+|||.++++++|+++|++|| .|.++.+.++ |||||+|.+.++|.+|++.||+. .+.| +.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE---EEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC---CccCCcCcceEEE
Confidence 3458999999999999999999999999 9999999998 99999999999999999999999 9999 9999
Q ss_pred EEecCCCCC
Q 020857 227 CSWGSKPTP 235 (320)
Q Consensus 227 v~~a~~~~~ 235 (320)
|.+++++..
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999987544
No 211
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.8e-17 Score=122.40 Aligned_cols=80 Identities=24% Similarity=0.528 Sum_probs=73.6
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHc-CCCCcccccC
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMG-NTTQSSYLFG 222 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~g 222 (320)
....++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.| |+. .+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~---~~~g 86 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFG--ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST---HLYG 86 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC---BSSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccC--CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC---eECC
Confidence 34458899999999999999999999999 9999999876 799999999999999999999 999 9999
Q ss_pred eEeEEEecCCCCC
Q 020857 223 KQMKCSWGSKPTP 235 (320)
Q Consensus 223 ~~l~v~~a~~~~~ 235 (320)
+.|+|.|++++..
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999987654
No 212
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=9.9e-18 Score=125.30 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=70.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+||++++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G--~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~---~~~gr~i~ 79 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYG--EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT---SVMGNIIH 79 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC---EECCeEEE
Confidence 347899999999999999999999999 9999998754 689999999999999999999999 99999999
Q ss_pred EEecCCC
Q 020857 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9998654
No 213
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=119.62 Aligned_cols=80 Identities=28% Similarity=0.438 Sum_probs=73.2
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 78 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFG--KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF---ELAGRPMR 78 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC---CSSSSCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC---eeCCcEEE
Confidence 347999999999999999999999999 9999999875 689999999999999999999999 99999999
Q ss_pred EEecCCCCCCC
Q 020857 227 CSWGSKPTPPG 237 (320)
Q Consensus 227 v~~a~~~~~~~ 237 (320)
|.|++++....
T Consensus 79 V~~a~~~~~~~ 89 (95)
T 2dnz_A 79 VGHVTERLDGG 89 (95)
T ss_dssp EEESSCCCCCC
T ss_pred EEEcccccCCC
Confidence 99998765543
No 214
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=9.4e-18 Score=126.68 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=70.3
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++|||+|||+++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.++
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~---~~~g~~i~V~~a 80 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFVGRF 80 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEEES
T ss_pred CEEEECCCCCCCCHHHHHHHHhccC--CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 6799999999999999999999999 9999999865 689999999999999999999999 999999999998
Q ss_pred CCCC
Q 020857 231 SKPT 234 (320)
Q Consensus 231 ~~~~ 234 (320)
.++.
T Consensus 81 ~~~~ 84 (115)
T 4f25_A 81 KSRK 84 (115)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7653
No 215
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=1.9e-17 Score=126.19 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=72.7
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccce-EEEEecCHHHHHHHHHHhCCCeeCC--ee
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF-GFVSFRNQQDAQSAINDLTGKWLGS--RQ 104 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~A~~~l~~~~~~g--~~ 104 (320)
..++.-.+|||+||++.+||++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|.+|++.|||..|.| +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 34455678999999999999999999999999999999864 2577 9999999999999999999999988 99
Q ss_pred EEEEeccCCC
Q 020857 105 IRCNWATKGA 114 (320)
Q Consensus 105 l~v~~a~~~~ 114 (320)
|+|+|++...
T Consensus 98 LrI~~ak~~~ 107 (130)
T 3zzy_A 98 LRIDFSKLTS 107 (130)
T ss_dssp EEEEECSCSS
T ss_pred EEEEecCCCc
Confidence 9999998754
No 216
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.5e-18 Score=124.54 Aligned_cols=76 Identities=30% Similarity=0.562 Sum_probs=72.1
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
..++|||+|||.++++++|+++|++|| .|.++++.+++|||||+|.+.++|.+|++.||+. .+.|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF---PFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---EETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEeccC
Confidence 348999999999999999999999999 8999999999999999999999999999999999 99999999999875
Q ss_pred C
Q 020857 233 P 233 (320)
Q Consensus 233 ~ 233 (320)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=4.4e-17 Score=120.50 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=71.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.+ +||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFG--KLERVKKLK--DYAFIHFDERDGAVKAMEEMNGK---DLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHS--CEEEEEECS--SCEEEEESSHHHHHHHHHHHTTE---EETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEC--CEEEEEeCCHHHHHHHHHHHCCC---ccCCCEEEEEEcC
Confidence 3458899999999999999999999999 999999985 59999999999999999999999 9999999999997
Q ss_pred CCCCC
Q 020857 232 KPTPP 236 (320)
Q Consensus 232 ~~~~~ 236 (320)
++...
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 218
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2.2e-17 Score=125.25 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=69.2
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccce-EEEEecCHHHHHHHHHHhCCCeeCC--eeEEE
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGF-GFVSFRNQQDAQSAINDLTGKWLGS--RQIRC 107 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~A~~~l~~~~~~g--~~l~v 107 (320)
+.-..|||+||++.+|+++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 33456789999999999999999999999999999752 276 9999999999999999999999987 69999
Q ss_pred EeccCCC
Q 020857 108 NWATKGA 114 (320)
Q Consensus 108 ~~a~~~~ 114 (320)
.++.++.
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9998764
No 219
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.3e-17 Score=119.64 Aligned_cols=78 Identities=21% Similarity=0.467 Sum_probs=71.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++ ||+. .+.|+.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFG--VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH---DIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSS--CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC---BSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC---EECCeEE
Confidence 3458999999999999999999999999 9999999764 7899999999999999998 9999 9999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|++++..
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999986644
No 220
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=3.1e-17 Score=123.87 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
...+..++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g 94 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFG--NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF---QIGM 94 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGS--CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETT
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC---EECC
Confidence 3344558999999999999999999999999 8888888765 489999999999999999999999 9999
Q ss_pred eEeEEEecCCCCC
Q 020857 223 KQMKCSWGSKPTP 235 (320)
Q Consensus 223 ~~l~v~~a~~~~~ 235 (320)
+.|+|.|++++..
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 9999999977654
No 221
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=121.47 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=71.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC---------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~---------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.++|||+|||.++++++|+++|++|| .|..+.+.+ .+|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 79 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVG--AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH---TVDGHK 79 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC---EETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC---eeCCeE
Confidence 47899999999999999999999999 899998874 3579999999999999999999999 999999
Q ss_pred eEEEecCCCCCC
Q 020857 225 MKCSWGSKPTPP 236 (320)
Q Consensus 225 l~v~~a~~~~~~ 236 (320)
|+|.|++++...
T Consensus 80 l~V~~a~~~~~~ 91 (98)
T 2cpf_A 80 LEVRISERATKP 91 (98)
T ss_dssp CEEECSSCSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999776543
No 222
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=116.54 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=67.1
Q ss_pred cee-EEEcCCCccCcHHH----HHHHhccC-CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 33 HFN-IFVGDLSPEVTDAT----LFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 33 ~~~-l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
+.+ |||+|||+++++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999998 55899999 599887 34 9999999999999999999999999999999
Q ss_pred EEeccCCCCCCC
Q 020857 107 CNWATKGAGNNE 118 (320)
Q Consensus 107 v~~a~~~~~~~~ 118 (320)
|.++..+...-.
T Consensus 78 v~~A~~~sd~~~ 89 (96)
T 2diu_A 78 VSFTPKNRELCE 89 (96)
T ss_dssp EESSCCSCCCCC
T ss_pred EEecCCCcceeE
Confidence 999987765433
No 223
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.2e-17 Score=134.33 Aligned_cols=136 Identities=21% Similarity=0.342 Sum_probs=73.7
Q ss_pred EEecCHHHHHHHHHHhCCCeeC--CeeEEEEeccCCCCCCCcccCCccccccccCCCCCCCCCCCCCCCCCCCCCcceEE
Q 020857 80 VSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 157 (320)
Q Consensus 80 V~f~~~~~A~~A~~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (320)
.+|.+.++|..++..+++.... |+.+...+........ .....+ .........+......++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~----------~~~~~~-----s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS----------YERVRN-----EDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC----------cccccc-----CCCCCCCCCCCCCCCCCEE
Confidence 7899999999999999887554 6655555432211000 000000 0000011223344556899
Q ss_pred EECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 158 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 158 ~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
||+|||.++++++|+++|++|| .|..|.+.++ +|||||+|.+.++|..|+..||+. .|.|+.|+|.|+.
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQTIQVDWCF 150 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEESE
T ss_pred EEeCCCCCCCHHHHHHHhhcCC--CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEEEec
Confidence 9999999999999999999999 9999999865 699999999999999999999999 9999999999997
Q ss_pred CCCC
Q 020857 232 KPTP 235 (320)
Q Consensus 232 ~~~~ 235 (320)
++..
T Consensus 151 ~~~~ 154 (165)
T 1rk8_A 151 VKGP 154 (165)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6543
No 224
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=4.2e-17 Score=121.00 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=73.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccC---e
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG---K 223 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g---~ 223 (320)
...++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.| +
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~gg~~~ 87 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFG--VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGS---QTMPGASS 87 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSC---CCCTTCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCC---ccCCCCCc
Confidence 3458999999999999999999999999 8999999876 799999999999999999999999 8888 9
Q ss_pred EeEEEecCCCCCC
Q 020857 224 QMKCSWGSKPTPP 236 (320)
Q Consensus 224 ~l~v~~a~~~~~~ 236 (320)
.|+|.|++.+...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876543
No 225
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=122.30 Aligned_cols=80 Identities=31% Similarity=0.517 Sum_probs=73.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTS--CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEE
Confidence 3458899999999999999999999999 8999999764 799999999999999999999999 9999999
Q ss_pred EEEecCCCCCC
Q 020857 226 KCSWGSKPTPP 236 (320)
Q Consensus 226 ~v~~a~~~~~~ 236 (320)
+|.|++++...
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 2cqb_A 85 RVNLAKPMRIK 95 (102)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 226
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=124.00 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=72.9
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
..++|||+|||.++++++|+++|++|| .|.++.+.+++|+|||+|.+.++|.+|+..||+. .+.|+.|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS---KFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC---BSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC---EECCeEEEEEECCC
Confidence 347999999999999999999999999 9999999999999999999999999999999999 99999999999976
Q ss_pred CC
Q 020857 233 PT 234 (320)
Q Consensus 233 ~~ 234 (320)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 227
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=121.08 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=73.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 87 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFG--SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF---GYDHLIL 87 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTC--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC---eeCCcEE
Confidence 3458999999999999999999999999 8999999865 579999999999999999999999 9999999
Q ss_pred EEEecCCCCCC
Q 020857 226 KCSWGSKPTPP 236 (320)
Q Consensus 226 ~v~~a~~~~~~ 236 (320)
+|.|++++...
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 228
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=124.78 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=68.5
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCC---CCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
...+++|||+|||+++||++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 45678999999999999999999999999999 888888777 7999999999999999999999883 36777776
Q ss_pred EEec
Q 020857 107 CNWA 110 (320)
Q Consensus 107 v~~a 110 (320)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6643
No 229
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=117.35 Aligned_cols=78 Identities=26% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
....++|||+|||.++++++|+++|++|| .|.++.+.++ ||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYG--PVIECDIVKD--YAFVHMERAEDAVEAIRGLDNT---EFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTS--CCCEEEECSS--EEEEEESCHHHHHHHHHHHTTE---EETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---eeCCcEEEEEEc
Confidence 34458999999999999999999999999 8999999865 9999999999999999999999 999999999999
Q ss_pred CCCCC
Q 020857 231 SKPTP 235 (320)
Q Consensus 231 ~~~~~ 235 (320)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 76644
No 230
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=119.60 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=72.3
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
...++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHG--TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM---TIKENIIK 89 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE---ESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC---EECCEEEE
Confidence 4457899999999999999999999999 8999999865 489999999999999999999999 99999999
Q ss_pred EEecCCCCC
Q 020857 227 CSWGSKPTP 235 (320)
Q Consensus 227 v~~a~~~~~ 235 (320)
|.|++++..
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999976543
No 231
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=121.06 Aligned_cols=79 Identities=28% Similarity=0.435 Sum_probs=72.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
..++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~ 88 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFG--TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR---IVATKPLYVA 88 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTS--CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC---EeCCcEEEEE
Confidence 447899999999999999999999999 8999999854 899999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q 020857 229 WGSKPTPP 236 (320)
Q Consensus 229 ~a~~~~~~ 236 (320)
|++++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2d9p_A 89 LAQRKEER 96 (103)
T ss_dssp ECSSCCCC
T ss_pred EecccccC
Confidence 99876543
No 232
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=120.92 Aligned_cols=80 Identities=28% Similarity=0.454 Sum_probs=72.9
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYG--QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK---SVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHS--CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC---CTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 3448999999999999999999999999 8999999864 689999999999999999999999 9999999
Q ss_pred EEEecCCCCCC
Q 020857 226 KCSWGSKPTPP 236 (320)
Q Consensus 226 ~v~~a~~~~~~ 236 (320)
+|.|++++...
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999776543
No 233
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=3e-17 Score=116.37 Aligned_cols=74 Identities=24% Similarity=0.472 Sum_probs=70.1
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.+|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRIN 76 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTST--TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC---eeCCcEEEEE
Confidence 6899999999999999999999999 9999999866 789999999999999999999999 9999999999
Q ss_pred ecCCC
Q 020857 229 WGSKP 233 (320)
Q Consensus 229 ~a~~~ 233 (320)
|++++
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99765
No 234
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.8e-17 Score=119.03 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=63.1
Q ss_pred CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe--eCCeeEE
Q 020857 29 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW--LGSRQIR 106 (320)
Q Consensus 29 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~--~~g~~l~ 106 (320)
...+.++|||+|||+++||++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ +++.. +.|++|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4556789999999999999999999999999999999864 78999999999999984 45554 4699999
Q ss_pred EEeccCCC
Q 020857 107 CNWATKGA 114 (320)
Q Consensus 107 v~~a~~~~ 114 (320)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987654
No 235
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=1.8e-17 Score=136.52 Aligned_cols=105 Identities=9% Similarity=0.069 Sum_probs=85.1
Q ss_pred cCcccCCCceEEEecccCCCCc------CCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEE
Q 020857 7 NGRHLFGQPIKVNWAYASGQRE------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFV 80 (320)
Q Consensus 7 ~g~~~~g~~i~v~~~~~~~~~~------~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV 80 (320)
+...+.+...+|.+.......+ .+...++|||+|||+++|+++|+++|+.||.|.+|+|++++ ++.++|||||
T Consensus 77 ~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFV 155 (193)
T 2voo_A 77 ELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFV 155 (193)
T ss_dssp CCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEE
T ss_pred ceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEE
Confidence 4455666667776663221111 12346899999999999999999999999999999999986 6999999999
Q ss_pred EecCHHHHHHHHHHhCCCeeCCeeEEEEeccCC
Q 020857 81 SFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 113 (320)
Q Consensus 81 ~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~ 113 (320)
+|.+.++|.+|++.+ +..+.|++|.|.++...
T Consensus 156 eF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 156 VFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp EESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred EECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 999999999999655 56899999999987654
No 236
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.4e-17 Score=120.04 Aligned_cols=80 Identities=29% Similarity=0.498 Sum_probs=73.1
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
....++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAG--PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI---KLYGKP 86 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC---BCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC---eECCeE
Confidence 34458999999999999999999999999 9999999865 589999999999999999999999 999999
Q ss_pred eEEEecCCCCC
Q 020857 225 MKCSWGSKPTP 235 (320)
Q Consensus 225 l~v~~a~~~~~ 235 (320)
|+|.|++++..
T Consensus 87 l~v~~a~~~~~ 97 (105)
T 1x5u_A 87 IRVNKASAHNK 97 (105)
T ss_dssp CEEEETTTTSC
T ss_pred EEEEECCCCCc
Confidence 99999977644
No 237
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.4e-17 Score=119.22 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=72.4
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECG--HVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM---KLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTS--CEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC---CBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCcEEEE
Confidence 3458999999999999999999999999 8999998863 789999999999999999999999 999999999
Q ss_pred EecCCCCC
Q 020857 228 SWGSKPTP 235 (320)
Q Consensus 228 ~~a~~~~~ 235 (320)
.|+++...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99977644
No 238
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.8e-17 Score=117.04 Aligned_cols=74 Identities=34% Similarity=0.587 Sum_probs=69.3
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 80 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGRTIR 80 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccC--CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC---EECCcEEE
Confidence 448999999999999999999999999 9999998654 799999999999999999999999 99999999
Q ss_pred EEecC
Q 020857 227 CSWGS 231 (320)
Q Consensus 227 v~~a~ 231 (320)
|+|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
No 239
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=120.74 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=72.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 85 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYG--RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA---ELDGREL 85 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC---CBTTBCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC---EECCcEE
Confidence 3458999999999999999999999999 9999999764 689999999999999999999999 9999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|++....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dnm_A 86 RVQVARYGRR 95 (103)
T ss_dssp EEEECSSCCS
T ss_pred EEEECCcCCC
Confidence 9999986544
No 240
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=117.87 Aligned_cols=76 Identities=34% Similarity=0.648 Sum_probs=69.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~ 79 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFG--RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ---WLGGRQIR 79 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCeEEE
Confidence 348999999999999999999999999 8999999865 689999999999999999999999 99999999
Q ss_pred EEecCCC
Q 020857 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|.|++++
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9998764
No 241
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=118.78 Aligned_cols=75 Identities=33% Similarity=0.495 Sum_probs=69.8
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
++.++|||+|||.++++++|+++|++|| .|..+.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 88 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYG--KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK---QLFGRVI 88 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTS--CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE---EETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC---eeCCcEE
Confidence 4457899999999999999999999999 8999999764 689999999999999999999999 9999999
Q ss_pred EEEecC
Q 020857 226 KCSWGS 231 (320)
Q Consensus 226 ~v~~a~ 231 (320)
+|.|++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999975
No 242
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.8e-17 Score=121.64 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=70.6
Q ss_pred cceEEEE--CCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccc-----cCeEe
Q 020857 153 QYTTVYV--GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-----FGKQM 225 (320)
Q Consensus 153 ~~~~l~V--~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-----~g~~l 225 (320)
+.++||| +||+.++++++|+++|++|| .|.++.+..++|||||+|.+.++|.+|++.|||. .+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~---~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK---EVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC---EEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EEccccCCCcEE
Confidence 3478999 77999999999999999999 9999999999999999999999999999999999 77 68999
Q ss_pred EEEecCCC
Q 020857 226 KCSWGSKP 233 (320)
Q Consensus 226 ~v~~a~~~ 233 (320)
.|.|+..-
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99998754
No 243
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=4.6e-17 Score=120.40 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=74.1
Q ss_pred CCCceeEEEcCCCc-----cCcHHHHHHHhccCCCeeEEEEeecCCC-CCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 30 TSGHFNIFVGDLSP-----EVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 30 ~~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
..++++|+|+||.. +-++++|++.|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|++.|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999973 3478999999999999999999998654 68999999999999999999999999999999
Q ss_pred eEEEEeccC
Q 020857 104 QIRCNWATK 112 (320)
Q Consensus 104 ~l~v~~a~~ 112 (320)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 244
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=119.73 Aligned_cols=79 Identities=28% Similarity=0.563 Sum_probs=72.0
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEE-EeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-RVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~-~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
+.++|||+|||.++++++|+++|++|| .|.++ ++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFG--VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ---YLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTS--CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC---EETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC---EECCEEE
Confidence 348999999999999999999999999 88888 88765 799999999999999999999999 9999999
Q ss_pred EEEecCCCCCC
Q 020857 226 KCSWGSKPTPP 236 (320)
Q Consensus 226 ~v~~a~~~~~~ 236 (320)
+|.|++++...
T Consensus 79 ~v~~a~~~~~~ 89 (96)
T 1x5t_A 79 TVSYAFKKDSK 89 (96)
T ss_dssp EEEESCCCCCC
T ss_pred EEEEecccCCC
Confidence 99999776543
No 245
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=116.66 Aligned_cols=76 Identities=26% Similarity=0.391 Sum_probs=70.7
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
..++|||+|||.++++++|+++|++|| .|.++.+.++ ||||+|.+.++|.+|++.||+. .+.|+.|+|.|+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRG--RVIECDVVKD--YAFVHMEKEADAKAAIAQLNGK---EVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHS--CEEEEEECSS--CEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCC--CEEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEECCC
Confidence 447899999999999999999999999 8999999865 9999999999999999999999 99999999999977
Q ss_pred CCC
Q 020857 233 PTP 235 (320)
Q Consensus 233 ~~~ 235 (320)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 246
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=117.22 Aligned_cols=80 Identities=20% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
..+.++|||+|||.++++++|+++|++||...|.++.+. +|||||+|.+.++|.+|+..||+. .+.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK---VLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE---EETTEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC---EeCCcEEEEEEC
Confidence 345589999999999999999999999922289999876 579999999999999999999999 999999999999
Q ss_pred CCCCC
Q 020857 231 SKPTP 235 (320)
Q Consensus 231 ~~~~~ 235 (320)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 247
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=116.52 Aligned_cols=77 Identities=23% Similarity=0.256 Sum_probs=71.4
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.+.++|||+|+ ++++++|+++|++|| .|.++.+.+.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE---EETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCC--CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEECC
Confidence 34589999996 899999999999999 9999999999999999999999999999999999 9999999999997
Q ss_pred CCCC
Q 020857 232 KPTP 235 (320)
Q Consensus 232 ~~~~ 235 (320)
++..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7644
No 248
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=5.7e-17 Score=122.48 Aligned_cols=78 Identities=29% Similarity=0.436 Sum_probs=72.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~~~g~~l~V~ 81 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHG--PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK---SLHGKAIKVE 81 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSS--CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC---BCSSSBCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEE
Confidence 37899999999999999999999999 8999999876 599999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q 020857 229 WGSKPTPP 236 (320)
Q Consensus 229 ~a~~~~~~ 236 (320)
|++++...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 249
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=4.3e-17 Score=118.95 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=71.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .++|+.|+|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V 76 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVG--PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY---QLGSRFLKC 76 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC---eECCeEEEE
Confidence 37899999999999999999999999 9999999765 799999999999999999999999 999999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
.|++++.
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9997654
No 250
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=6.5e-17 Score=120.21 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=72.5
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccc---c
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYL---F 221 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~---~ 221 (320)
....++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+ .
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~~ 84 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFG--KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ---KTLPGM 84 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHS--CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT---CCCTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC---cccCCC
Confidence 34558999999999999999999999999 8999999864 689999999999999999999998 76 8
Q ss_pred CeEeEEEecCCCCC
Q 020857 222 GKQMKCSWGSKPTP 235 (320)
Q Consensus 222 g~~l~v~~a~~~~~ 235 (320)
|+.|+|.|++++..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 99999999987654
No 251
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=119.28 Aligned_cols=78 Identities=31% Similarity=0.454 Sum_probs=71.9
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.....++|||+|||.++++++|+++|++|| .|.++++.++ +|+|||+|.+.++|.+|++.||+. .+.|+.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~ 86 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAG--PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI---RLYGRP 86 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC---EECCCE
Confidence 344568999999999999999999999999 9999999865 689999999999999999999999 999999
Q ss_pred eEEEecCC
Q 020857 225 MKCSWGSK 232 (320)
Q Consensus 225 l~v~~a~~ 232 (320)
|+|.|++.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999864
No 252
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-18 Score=121.29 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=67.4
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHc-CCCCcccccCeEeEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKC 227 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l-~~~~~~~~~g~~l~v 227 (320)
++|||+|||.++|+++|+++|++||. .|.++++.++ +|||||+|.+.++|.+|++.+ ++. .++|++|+|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~---~~~gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSL---NILGQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEE---EETTEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCe---EECCEEEEE
Confidence 68999999999999999999999982 5888888754 799999999999999999987 456 799999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
+|+.++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9997654
No 253
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-16 Score=119.63 Aligned_cols=81 Identities=27% Similarity=0.455 Sum_probs=71.8
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
....+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.+++ .+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~----~~~g 85 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFG--DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP----IIDG 85 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTS--CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC----EETT
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC----cCCC
Confidence 3445568999999999999999999999999 8999999875 68999999999999999999885 4999
Q ss_pred eEeEEEecCCCCC
Q 020857 223 KQMKCSWGSKPTP 235 (320)
Q Consensus 223 ~~l~v~~a~~~~~ 235 (320)
+.|+|.|+.....
T Consensus 86 ~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 86 RKANVNLAYLGAK 98 (116)
T ss_dssp EECEEEESTTTCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999976543
No 254
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=120.64 Aligned_cols=77 Identities=27% Similarity=0.410 Sum_probs=68.1
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCcc-EEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCC-CCcccccCeEeEEEec
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT-TQSSYLFGKQMKCSWG 230 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~-~~~~~~~g~~l~v~~a 230 (320)
..++|||+|||.++++++|+++|++|| . |..+.+ ..+|||||+|.+.++|.+|++.||+ . .+.|+.|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK--LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKV---ELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT--CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTC---EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCe---eECCEEEEEEEc
Confidence 347899999999999999999999999 6 444444 5689999999999999999999999 8 999999999999
Q ss_pred CCCCC
Q 020857 231 SKPTP 235 (320)
Q Consensus 231 ~~~~~ 235 (320)
+++..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87644
No 255
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=3.2e-17 Score=151.36 Aligned_cols=86 Identities=20% Similarity=0.438 Sum_probs=80.8
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 109 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 109 (320)
..+.++|||+|||+++|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 020857 110 ATKGAG 115 (320)
Q Consensus 110 a~~~~~ 115 (320)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976543
No 256
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=121.43 Aligned_cols=80 Identities=26% Similarity=0.422 Sum_probs=72.8
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
.....++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 93 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---DLMGQ 93 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC---BSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC---EECCc
Confidence 334558999999999999999999999999 9999999754 689999999999999999999999 99999
Q ss_pred EeEEEecCCCC
Q 020857 224 QMKCSWGSKPT 234 (320)
Q Consensus 224 ~l~v~~a~~~~ 234 (320)
.|+|.|++++.
T Consensus 94 ~l~V~~a~~~~ 104 (106)
T 1p27_B 94 PISVDWCFVRG 104 (106)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEeecCCC
Confidence 99999987653
No 257
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=118.11 Aligned_cols=78 Identities=28% Similarity=0.332 Sum_probs=71.4
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
...+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~ 85 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM---ELDGR 85 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTS--CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE---EETTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC---EECCE
Confidence 344568999999999999999999999999 8999999754 689999999999999999999999 99999
Q ss_pred EeEEEecCC
Q 020857 224 QMKCSWGSK 232 (320)
Q Consensus 224 ~l~v~~a~~ 232 (320)
.|+|.|+++
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999865
No 258
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=119.98 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=72.8
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcC------CCCcc
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGN------TTQSS 218 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~------~~~~~ 218 (320)
..+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.|| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~--- 86 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFG--DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL--- 86 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE---
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc---
Confidence 34458899999999999999999999999 9999999854 7899999999999999999999 99
Q ss_pred cccCeEeEEEecCCCCC
Q 020857 219 YLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 219 ~~~g~~l~v~~a~~~~~ 235 (320)
.+.|+.|+|.|+.++..
T Consensus 87 ~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp ESSSCEEEEECCCCCCC
T ss_pred EEcCEEEEEEECCCCcc
Confidence 99999999999976543
No 259
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=119.98 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=73.7
Q ss_pred CCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 148 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
+...+..++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~---~i~ 94 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFG--RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF---ELA 94 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTS--CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC---CSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC---EEC
Confidence 34445568999999999999999999999999 8999998754 689999999999999999999999 999
Q ss_pred CeEeEEEecCCCC
Q 020857 222 GKQMKCSWGSKPT 234 (320)
Q Consensus 222 g~~l~v~~a~~~~ 234 (320)
|+.|+|.|++++.
T Consensus 95 g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 GRPMKVGHVTERT 107 (108)
T ss_dssp SSCCEEECSCSSC
T ss_pred CEEEEEEEcccCC
Confidence 9999999987653
No 260
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=2.2e-17 Score=124.62 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=66.7
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee-----E
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ-----I 105 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~-----l 105 (320)
...++|||+|||+++||++|+++|+.||+|.+|.|+.+ |||||+|.+.++|++|++.||+..|.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999765 89999999999999999999999999998 7
Q ss_pred EEEeccCC
Q 020857 106 RCNWATKG 113 (320)
Q Consensus 106 ~v~~a~~~ 113 (320)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77766553
No 261
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=116.06 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=69.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC-------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
++|||+|||.++++++|+++|++|| .|.++.+.+ .+|+|||+|.+.++|.+|++.||+. .++|+.|+|
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v 79 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYG--KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG---QIDGQEITA 79 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTS--CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC---eECCeEEEE
Confidence 7899999999999999999999999 999998864 4789999999999999999999999 999999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
+++.++.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9986653
No 262
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=6.6e-17 Score=121.01 Aligned_cols=81 Identities=22% Similarity=0.439 Sum_probs=73.6
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
.....++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|+..||+. .+.|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~ 96 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQ 96 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGS--CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC---EETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCc
Confidence 344568999999999999999999999999 9999999765 699999999999999999999999 99999
Q ss_pred EeEEEecCCCCC
Q 020857 224 QMKCSWGSKPTP 235 (320)
Q Consensus 224 ~l~v~~a~~~~~ 235 (320)
.|+|.|++++.+
T Consensus 97 ~l~V~~a~~~~~ 108 (110)
T 1oo0_B 97 TIQVDWCFVKGP 108 (110)
T ss_dssp ECEEEESEESSC
T ss_pred EEEEEEcccCCC
Confidence 999999976543
No 263
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=122.42 Aligned_cols=80 Identities=28% Similarity=0.399 Sum_probs=73.1
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
......++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .++|+.
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTC--CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC---EETTEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcC--CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC---EECCEE
Confidence 3344558999999999999999999999999 8999999866 799999999999999999999999 999999
Q ss_pred eEEEecCCC
Q 020857 225 MKCSWGSKP 233 (320)
Q Consensus 225 l~v~~a~~~ 233 (320)
|+|.|++++
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998764
No 264
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=120.21 Aligned_cols=80 Identities=24% Similarity=0.314 Sum_probs=72.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhc-cCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCccc-ccCeEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSY-LFGKQM 225 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~-~~g~~l 225 (320)
+.++|||+|||.++++++|+++|++ || .|.++.+.++ +|||||+|.+.++|.+|++.||+. . +.|+.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G--~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~g~~l 82 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYP--SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA---VGLGSKPV 82 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCT--TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC---CSSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC---cccCCEeE
Confidence 3478999999999999999999999 99 9999999865 799999999999999999999999 8 999999
Q ss_pred EEEecCCCCCCC
Q 020857 226 KCSWGSKPTPPG 237 (320)
Q Consensus 226 ~v~~a~~~~~~~ 237 (320)
+|.|+.++....
T Consensus 83 ~v~~a~~~~~~~ 94 (104)
T 2dhg_A 83 RLSVAIPKASRV 94 (104)
T ss_dssp CCCBCCCCCSCC
T ss_pred EEEEccCCCcCC
Confidence 999997665433
No 265
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=5.6e-17 Score=123.34 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=71.9
Q ss_pred cCCCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 020857 28 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 107 (320)
Q Consensus 28 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 107 (320)
....++++|||+|| ++|+++|+++|+.||.|.+|+|. .++|||||+|.+.++|.+|++.|++..+.|++|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999996 79999999999999999999985 46789999999999999999999999999999999
Q ss_pred EeccCCCC
Q 020857 108 NWATKGAG 115 (320)
Q Consensus 108 ~~a~~~~~ 115 (320)
.|+.++..
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 266
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=2.7e-17 Score=117.65 Aligned_cols=72 Identities=15% Similarity=0.398 Sum_probs=67.0
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccC----C-------CeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 99 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~ 99 (320)
.+.++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8999998754 689999999999999999 999999
Q ss_pred eCCeeEEEEe
Q 020857 100 LGSRQIRCNW 109 (320)
Q Consensus 100 ~~g~~l~v~~ 109 (320)
+.|++|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 267
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1e-16 Score=117.14 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=70.5
Q ss_pred CCcceEEEECCCCc-cCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 151 NPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 151 ~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
.++.++|||+|||. ++++++|+++|++|| .|.++.+. +|||||+|.+.++|.+|++.||+. .+.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE---MNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGS--CEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS---EETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEe
Confidence 34568999999998 999999999999999 99999985 789999999999999999999999 99999999999
Q ss_pred cCCC
Q 020857 230 GSKP 233 (320)
Q Consensus 230 a~~~ 233 (320)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8764
No 268
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=119.62 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=71.8
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYG--PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK---VICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHC--CCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHS---CSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCC---eECCcEEEEEEccCC
Confidence 4799999999999999999999999 8999999987 999999999999999999999999 999999999999876
Q ss_pred CC
Q 020857 234 TP 235 (320)
Q Consensus 234 ~~ 235 (320)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 269
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=6.2e-17 Score=120.65 Aligned_cols=77 Identities=22% Similarity=0.420 Sum_probs=71.5
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
....++|||+|||.++++++|+++|++|| .|.++.+. +|||||+|.+.++|.+|++.||+. .+.|+.|+|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK---SFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC---EETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEEe
Confidence 34558999999999999999999999999 89999888 799999999999999999999999 999999999999
Q ss_pred CCCC
Q 020857 231 SKPT 234 (320)
Q Consensus 231 ~~~~ 234 (320)
+.+.
T Consensus 101 ~~~~ 104 (108)
T 2jvo_A 101 KLPA 104 (108)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 270
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.70 E-value=9.4e-17 Score=121.74 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=71.3
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
......++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .++|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g 109 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFG--NVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF---QVGT 109 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSC--EEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC---EETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC---EECC
Confidence 3445668999999999999999999999999 9999999765 789999999999999999999999 9999
Q ss_pred eEeEEEecC
Q 020857 223 KQMKCSWGS 231 (320)
Q Consensus 223 ~~l~v~~a~ 231 (320)
+.|+|+|++
T Consensus 110 ~~l~V~~ak 118 (118)
T 2khc_A 110 KRLKVQLKK 118 (118)
T ss_dssp EECCEEEC-
T ss_pred EEEEEEecC
Confidence 999999974
No 271
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=123.48 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=70.4
Q ss_pred CcceEEEECCCCccCcHHHHH----HHHhccCCccEEEEEeeC---CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~~~i~~~~~~~---~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.+.++|||+|||+++++++|+ ++|++|| .|.+|.+.+ .+|||||+|.+.++|..|+..|||. .+.|+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G--~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~---~l~gr~ 101 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQG--DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY---PFQGNP 101 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC---CCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC--CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC---EeCCCE
Confidence 445899999999999999876 7999999 899998864 4899999999999999999999999 999999
Q ss_pred eEEEecCCCC
Q 020857 225 MKCSWGSKPT 234 (320)
Q Consensus 225 l~v~~a~~~~ 234 (320)
|+|.|++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997653
No 272
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=118.14 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=66.5
Q ss_pred CCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEec
Q 020857 31 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 110 (320)
Q Consensus 31 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a 110 (320)
..+++|||+|||+++||++|+++|+.||.|.+|+|+++ ++|||||+|.+.++|+++... ...+.|++|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45789999999999999999999999999999999764 789999999999999765321 33458999999998
Q ss_pred cCCCC
Q 020857 111 TKGAG 115 (320)
Q Consensus 111 ~~~~~ 115 (320)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77644
No 273
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.9e-17 Score=118.89 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=71.0
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEE-EEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE-
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE-EVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ- 224 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~-~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~- 224 (320)
..++|||+|||.++++++|+++|++|| .|. ++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~~ 82 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMG--ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK---PLPGATP 82 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTT--CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS---EESSCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhC--CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC---ccCCCCc
Confidence 448999999999999999999999999 888 8888765 489999999999999999999999 999999
Q ss_pred ---eEEEecCCCCC
Q 020857 225 ---MKCSWGSKPTP 235 (320)
Q Consensus 225 ---l~v~~a~~~~~ 235 (320)
|+|.|++....
T Consensus 83 ~~~l~v~~a~~~~~ 96 (99)
T 2div_A 83 AKRFKLNYATYSGP 96 (99)
T ss_dssp CEECCEEETTCCSS
T ss_pred ceeEEEeecCCCCC
Confidence 99999976543
No 274
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=1.6e-16 Score=118.84 Aligned_cols=76 Identities=29% Similarity=0.516 Sum_probs=70.1
Q ss_pred cceEEEECCCCcc-CcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 153 QYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 153 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
..++|||+|||.+ +++++|+++|++|| .|.++.+ .+|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV--HKGYAFVQYSNERHARAAVLGENGR---VLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTC---EETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 3479999999999 99999999999999 8888888 5789999999999999999999999 9999999999997
Q ss_pred CCCC
Q 020857 232 KPTP 235 (320)
Q Consensus 232 ~~~~ 235 (320)
.+..
T Consensus 99 ~~~~ 102 (110)
T 1wf1_A 99 EPKP 102 (110)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 275
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=118.57 Aligned_cols=78 Identities=21% Similarity=0.425 Sum_probs=71.0
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCcc-EEEEEee-------CCCcEEEEEeCCHHHHHHHHHHcC--CCCcccccC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQ-------RDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFG 222 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~-i~~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~--~~~~~~~~g 222 (320)
+.++|||+|||.++++++|+++|++|| . |.++.+. +.+|||||+|.+.++|.+|++.|| +. .+.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G--~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~---~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVT--EGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI---QLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHS--TTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS---CBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhc--CCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc---eecC
Confidence 348999999999999999999999999 7 9999998 458999999999999999999996 58 8999
Q ss_pred eEeEEEecCCCCC
Q 020857 223 KQMKCSWGSKPTP 235 (320)
Q Consensus 223 ~~l~v~~a~~~~~ 235 (320)
+.|+|.|+++...
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999976544
No 276
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=118.25 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=69.9
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEE--------EEeeCC------CcEEEEEeCCHHHHHHHHHHcCC
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------VRVQRD------KGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~--------~~~~~~------~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
......++|||+|||.++++++|+++|++|| .|.. +++.++ +|+|||+|.+.++|.+|++.||+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTS--CBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3344558999999999999999999999999 7877 777654 68999999999999999999999
Q ss_pred CCcccccCeEeEEEecC
Q 020857 215 TQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 215 ~~~~~~~g~~l~v~~a~ 231 (320)
. .+.|+.|+|+|++
T Consensus 86 ~---~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 K---EFSGNPIKVSFAT 99 (99)
T ss_dssp C---BSSSSBCEEEECC
T ss_pred C---EeCCcEEEEEecC
Confidence 9 9999999999974
No 277
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=115.71 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=68.7
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
...++|||+|||.++++++|+++|++||.+. ..+...+.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL---RLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---CSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEcC
Confidence 3457999999999999999999999999432 33444566999999999999999999999999 9999999999997
Q ss_pred CCC
Q 020857 232 KPT 234 (320)
Q Consensus 232 ~~~ 234 (320)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 278
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=119.66 Aligned_cols=80 Identities=28% Similarity=0.397 Sum_probs=71.8
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEE--------EEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCC
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE--------EVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQ 216 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~--------~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~ 216 (320)
....++|||+|||.++++++|+++|++|| .|. .+++..+ +|||||+|.+.++|.+|++.||+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~- 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK- 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-
Confidence 34558999999999999999999999999 777 5777755 789999999999999999999999
Q ss_pred cccccCeEeEEEecCCCCC
Q 020857 217 SSYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 217 ~~~~~g~~l~v~~a~~~~~ 235 (320)
.+.|+.|+|.|++.+..
T Consensus 89 --~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 --DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp --EETTEECEEECSSCCCC
T ss_pred --ccCCCEEEEEECCCCCC
Confidence 99999999999987654
No 279
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=7e-17 Score=124.29 Aligned_cols=79 Identities=24% Similarity=0.325 Sum_probs=72.4
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
..+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~---~i~g~~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYG--PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM---ELDGRR 117 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTS--CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC---CSSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---EECCEE
Confidence 34458899999999999999999999999 9999999754 789999999999999999999999 999999
Q ss_pred eEEEecCCCC
Q 020857 225 MKCSWGSKPT 234 (320)
Q Consensus 225 l~v~~a~~~~ 234 (320)
|+|.|++++.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999997654
No 280
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=123.65 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=74.2
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
.....++|||+|||.++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 112 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYG--PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF---NILNK 112 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHS--CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE---ECSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCe
Confidence 344568999999999999999999999999 8999998754 689999999999999999999999 99999
Q ss_pred EeEEEecCCCCCC
Q 020857 224 QMKCSWGSKPTPP 236 (320)
Q Consensus 224 ~l~v~~a~~~~~~ 236 (320)
.|+|.|++++...
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 281
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1e-16 Score=123.06 Aligned_cols=82 Identities=27% Similarity=0.449 Sum_probs=74.2
Q ss_pred CCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC
Q 020857 149 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 222 (320)
Q Consensus 149 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g 222 (320)
......++|||+|||.++++++|+++|++|| .|.++.+..+ +|||||+|.+.++|.+|++.||+. .+.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g 91 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYG--EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ---DLMG 91 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC---BSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCC
Confidence 3344568999999999999999999999999 9999999866 799999999999999999999999 9999
Q ss_pred eEeEEEecCCCCC
Q 020857 223 KQMKCSWGSKPTP 235 (320)
Q Consensus 223 ~~l~v~~a~~~~~ 235 (320)
+.|+|.|+.....
T Consensus 92 ~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 92 QPISVDWCFVRGP 104 (126)
T ss_dssp SBCEEEESEESSS
T ss_pred eEEEEEEecCCCC
Confidence 9999999976543
No 282
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=9.1e-17 Score=117.37 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=71.8
Q ss_pred CcceEEEECCCCccCcHHHHH----HHHhccCCccEEEEEeeC---CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~~~i~~~~~~~---~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
++.++|||+|||.++++++|+ ++|++|| .|.++.+.+ .+|+|||+|.+.++|..|++.||+. .+.|+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF---PFYDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC---EECCcE
Confidence 345899999999999999999 9999999 999999883 4899999999999999999999999 999999
Q ss_pred eEEEecCCCC
Q 020857 225 MKCSWGSKPT 234 (320)
Q Consensus 225 l~v~~a~~~~ 234 (320)
|+|.|++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999997653
No 283
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=2.1e-17 Score=152.58 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=71.3
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||..+|+++|+++|++|| .|+.|.|+.+ +|||||+|.+.++|..||..||+. .|.|+.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~i~gr~i~ 175 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYG--PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK---KIDGRRVL 175 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC---EECCEEEE
Confidence 347899999999999999999999999 9999998754 799999999999999999999999 99999999
Q ss_pred EEecCCCC
Q 020857 227 CSWGSKPT 234 (320)
Q Consensus 227 v~~a~~~~ 234 (320)
|.|+....
T Consensus 176 V~~a~~~~ 183 (437)
T 3pgw_S 176 VDVERGRT 183 (437)
T ss_pred EEEeCCCC
Confidence 99997543
No 284
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.2e-16 Score=114.77 Aligned_cols=75 Identities=25% Similarity=0.466 Sum_probs=69.6
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|+ .||+. .+.|+.|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~---~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCG--SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES---LFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGC--CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC---EETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC---EECCcEEEE
Confidence 37899999999999999999999999 8999998765 789999999999999999 99999 999999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
.+++++.
T Consensus 80 ~~a~~~~ 86 (89)
T 3ucg_A 80 IPKRTNR 86 (89)
T ss_dssp EETTTTS
T ss_pred EEccCCC
Confidence 9987653
No 285
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=115.43 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=68.2
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEe--eCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV--QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
....++|||+|||.++++++|+++|++|| .|..+.. .+.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKAT--FIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR---EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCS--EEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE---EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC---EeCCeEEEEE
Confidence 34558999999999999999999999999 6632221 123899999999999999999999999 9999999999
Q ss_pred ecCCCCC
Q 020857 229 WGSKPTP 235 (320)
Q Consensus 229 ~a~~~~~ 235 (320)
|++++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9977643
No 286
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=2.1e-17 Score=119.06 Aligned_cols=77 Identities=27% Similarity=0.358 Sum_probs=64.5
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.+|||+|||.++++++|+++|++||...|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~---~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR---ELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS---CSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC---eeCCEEEEEE
Confidence 4799999999999999999999999446777777654 689999999999999999999999 9999999999
Q ss_pred ecCCCC
Q 020857 229 WGSKPT 234 (320)
Q Consensus 229 ~a~~~~ 234 (320)
++.++.
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 987653
No 287
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.8e-16 Score=118.05 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=70.6
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
..+.++|||+|||.++++++|+++|++|| .|..+.+.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 100 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV---PLDGRPM 100 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EeCCcEE
Confidence 34558999999999999999999999999 9999999854 789999999999999999999999 9999999
Q ss_pred EEEecC
Q 020857 226 KCSWGS 231 (320)
Q Consensus 226 ~v~~a~ 231 (320)
+|.|++
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999975
No 288
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=8.6e-17 Score=117.30 Aligned_cols=77 Identities=26% Similarity=0.502 Sum_probs=70.4
Q ss_pred CcceEEEECCCCc-cCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 152 PQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 152 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
++.++|||+|||. ++++++|+++|++|| .|.++.+. +|||||+|.+.++|..|++.||+. .+.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIECESQE---MNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTC--CCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS---SCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---eeCCcEEEEEEc
Confidence 3458999999998 999999999999999 89999886 689999999999999999999999 999999999999
Q ss_pred CCCCC
Q 020857 231 SKPTP 235 (320)
Q Consensus 231 ~~~~~ 235 (320)
+.+..
T Consensus 81 ~~~~~ 85 (96)
T 2kvi_A 81 SSNAR 85 (96)
T ss_dssp ECCCC
T ss_pred CcCCC
Confidence 76543
No 289
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=8.6e-16 Score=116.48 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=68.6
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcE-EEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEecC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSWGS 231 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~a~ 231 (320)
..|||+||++.+++++|+++|++|| .|.++++.+..|+ |||+|.+.++|..|++.|||. .|.| +.|+|.|++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~---~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGA---DIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTC---CCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCeEEEEEEec
Confidence 4578999999999999999999999 9999988766796 999999999999999999999 8987 699999998
Q ss_pred CCC
Q 020857 232 KPT 234 (320)
Q Consensus 232 ~~~ 234 (320)
.+.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 290
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.35 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=70.8
Q ss_pred ceEEEECCCCccCcHHHHH---HHHhccCCccEEEEEeeCC---------CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 154 YTTVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~---~~F~~~G~~~i~~~~~~~~---------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
.++|||+|||+++++++|+ ++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G--~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~---~~~ 89 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFG--KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV---VVD 89 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTS--CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE---EET
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccC--CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC---EEC
Confidence 3789999999999999999 9999999 9999999865 379999999999999999999999 999
Q ss_pred CeEeEEEecCCCC
Q 020857 222 GKQMKCSWGSKPT 234 (320)
Q Consensus 222 g~~l~v~~a~~~~ 234 (320)
|+.|+|.|++++.
T Consensus 90 gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 GRTLKASLGTTKY 102 (111)
T ss_dssp TEEEEEESCCCCS
T ss_pred CEEEEEEeccccc
Confidence 9999999998765
No 291
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.6e-16 Score=114.93 Aligned_cols=77 Identities=27% Similarity=0.381 Sum_probs=69.5
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| |.++++.++ +|||||+|.+.++|.+|+ .||+. .+.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g---i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS---IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA---LLGDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC---EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC---EETTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC---ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC---eECCeEE
Confidence 3458999999999999999999999995 888888755 689999999999999999 89999 9999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|++++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999976544
No 292
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.68 E-value=8.1e-17 Score=118.35 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=69.0
Q ss_pred ceEEEECCCCc------cCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 154 YTTVYVGNLAP------EVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 154 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
.++|||+|||. ++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G--~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~ 80 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK---RLD 80 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTS--CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC---BSS
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcC--CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc---ccC
Confidence 47899999999 999999999999999 9999998744 799999999999999999999999 999
Q ss_pred C-eEeEEEecCC
Q 020857 222 G-KQMKCSWGSK 232 (320)
Q Consensus 222 g-~~l~v~~a~~ 232 (320)
| +.|+|.++.+
T Consensus 81 g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHRLFLYTMKD 92 (100)
T ss_dssp SSCBCEEEESHH
T ss_pred CCeEEEEEECch
Confidence 9 9999999854
No 293
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=117.99 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=71.7
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
....++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|+.. |+. .+.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~---~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYG--EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH---TLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE---EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC---eECCEE
Confidence 34458999999999999999999999999 9999999875 58999999999999999999 999 999999
Q ss_pred eEEEecCCCCC
Q 020857 225 MKCSWGSKPTP 235 (320)
Q Consensus 225 l~v~~a~~~~~ 235 (320)
|+|.|++++..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999976543
No 294
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.2e-16 Score=119.20 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=67.7
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee--CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.++|||+|||+++++++|+++|++||. .|..+.+. +.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~---~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI---EFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE---EETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 378999999999999999999999992 46666664 45899999999999999999999999 9999999999986
Q ss_pred CC
Q 020857 232 KP 233 (320)
Q Consensus 232 ~~ 233 (320)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 295
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-15 Score=116.91 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=71.8
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
...++|||+|||.++++++|+++|++|| .|.++++.++ +|+|||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~ 107 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV---PLDGRPMD 107 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTS--CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE---ESSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC---EECCcEEE
Confidence 4458999999999999999999999999 8899998764 799999999999999999999999 99999999
Q ss_pred EEecCCCC
Q 020857 227 CSWGSKPT 234 (320)
Q Consensus 227 v~~a~~~~ 234 (320)
|.|+....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99997654
No 296
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-16 Score=113.76 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=70.1
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.+.++|||+|||.++++++|+++|+.|| |.++.+.++ +|||||+|.+.++|.+|+ .||+. .+.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE---SLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC---EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC---EETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC---ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC---EeCCcE
Confidence 3458999999999999999999999997 888888644 689999999999999999 99999 999999
Q ss_pred eEEEecCCCCCC
Q 020857 225 MKCSWGSKPTPP 236 (320)
Q Consensus 225 l~v~~a~~~~~~ 236 (320)
|+|.|++++...
T Consensus 86 l~V~~a~~~~~~ 97 (104)
T 1wi8_A 86 IRVDVADQAQDK 97 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 297
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=116.82 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=67.4
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.++|||+|||.++|+++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|+. +++. .++|+.|+|.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G--~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~---~~~gr~l~V~ 84 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQ---KYKETDLLIL 84 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSS--CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCC---CCTTTTCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcC--CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCC---EECCEEEEEE
Confidence 47899999999999999999999999 9999999864 7999999999999999998 8999 9999999999
Q ss_pred ecC
Q 020857 229 WGS 231 (320)
Q Consensus 229 ~a~ 231 (320)
|+.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 864
No 298
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6e-17 Score=119.94 Aligned_cols=78 Identities=26% Similarity=0.440 Sum_probs=71.2
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l 80 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVG--PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR---EFSGRAL 80 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTS--CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB---SCSSSCB
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcC--CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC---eeCCcEE
Confidence 3457899999999999999999999999 8888888755 689999999999999999999999 9999999
Q ss_pred EEEecCCCC
Q 020857 226 KCSWGSKPT 234 (320)
Q Consensus 226 ~v~~a~~~~ 234 (320)
+|.|++++.
T Consensus 81 ~v~~a~~~~ 89 (104)
T 1p1t_A 81 RVDNAASEK 89 (104)
T ss_dssp EEEETTCTT
T ss_pred EEEeCCCcc
Confidence 999987653
No 299
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.5e-16 Score=115.86 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=69.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccE----EEEEee--CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI----EEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i----~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| .| ..+++. +.+|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQ--EKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY---KLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHH--HSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC---BCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhC--CccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC---EeCCcEE
Confidence 3458999999999999999999999999 55 444443 45899999999999999999999999 9999999
Q ss_pred EEEecCCCCCC
Q 020857 226 KCSWGSKPTPP 236 (320)
Q Consensus 226 ~v~~a~~~~~~ 236 (320)
+|.|++++...
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 300
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-16 Score=109.00 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=65.5
Q ss_pred eEEEECCCCccCcHHH----HHHHHhcc-CCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 155 TTVYVGNLAPEVTQLD----LHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~----l~~~F~~~-G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
+.|||+|||+++++++ |+++|++| | .|.+|. .|+|||+|.+.++|.+|++.|+|. .+.||+|+|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG--~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~---~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGG--KVLSIT----GCSAILRFINQDSAERAQKRMENE---DVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTC--CEEECC----TTCEEEEESSHHHHHHHHHHHTTC---CSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCC--eeEEEe----cCEEEEEECCHHHHHHHHHHhcCC---ccCCceEEEEe
Confidence 3499999999999988 55899999 6 888883 399999999999999999999999 99999999999
Q ss_pred cCCCCCC
Q 020857 230 GSKPTPP 236 (320)
Q Consensus 230 a~~~~~~ 236 (320)
++.+...
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9876553
No 301
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3.9e-16 Score=115.73 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=69.3
Q ss_pred ceEEEECCCCccC------cHHHHHHHHhccCCccEEEEEeeC----CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 154 YTTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQR----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 154 ~~~l~V~nl~~~~------t~~~l~~~F~~~G~~~i~~~~~~~----~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
.++|||+|||..+ ++++|+++|++|| .|.++.+.+ ++|||||+|.+.++|.+|+..|||. .+.|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~---~~~g~ 89 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY---KLDKQ 89 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGS--CEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSE---ECSTT
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCC--CEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCc---ccCCC
Confidence 4799999999999 7899999999999 999999984 3799999999999999999999999 99998
Q ss_pred -EeEEEecCCC
Q 020857 224 -QMKCSWGSKP 233 (320)
Q Consensus 224 -~l~v~~a~~~ 233 (320)
.|+|.|+...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998653
No 302
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=116.36 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=67.2
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|.++.+.. .+|||||+|.+.++|.+|++.||+. .+.|+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQ--VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR---PIGSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSC--CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC--CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC---eeCCeEE
Confidence 3458999999999999999999999999 555444332 2799999999999999999999999 9999999
Q ss_pred EEEecCCC
Q 020857 226 KCSWGSKP 233 (320)
Q Consensus 226 ~v~~a~~~ 233 (320)
+|.+++.+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 303
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.2e-17 Score=121.61 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=70.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|+.|| .|.++.+.++ +|||||+|.+.++|.+|+ .||+. .+.|+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~l 96 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVG--KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ---RLLGVPI 96 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTS--CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC---EeCCeEE
Confidence 3458999999999999999999999999 9999999753 689999999999999999 99999 9999999
Q ss_pred EEEecCCC
Q 020857 226 KCSWGSKP 233 (320)
Q Consensus 226 ~v~~a~~~ 233 (320)
+|.|++.+
T Consensus 97 ~V~~a~~~ 104 (114)
T 2cq4_A 97 IVQASQAE 104 (114)
T ss_dssp EEEEHHHH
T ss_pred EEEecCCC
Confidence 99998654
No 304
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=113.93 Aligned_cols=85 Identities=20% Similarity=0.329 Sum_probs=72.8
Q ss_pred CcCCCCceeEEEcCCCccC-----------cHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 020857 27 REDTSGHFNIFVGDLSPEV-----------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95 (320)
Q Consensus 27 ~~~~~~~~~l~V~nLp~~~-----------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l 95 (320)
...+.++++|+|+||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 3456678999999994432 36899999999999999966 554 38999999999999999999999
Q ss_pred CCCeeCCeeEEEEeccCCCC
Q 020857 96 TGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 96 ~~~~~~g~~l~v~~a~~~~~ 115 (320)
||..+.|++|.|.++.+...
T Consensus 85 ng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEETTEECEEEECCSCCC
T ss_pred CCCEECCcEEEEEEeCCCCC
Confidence 99999999999999877543
No 305
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=2.9e-16 Score=132.33 Aligned_cols=103 Identities=18% Similarity=0.289 Sum_probs=77.9
Q ss_pred CcccCCCceEEEecccCC-CCcCCCCceeEEEcCCCccC---------cHHHHHHHhccCCCeeEEEEeecCCCCCccce
Q 020857 8 GRHLFGQPIKVNWAYASG-QREDTSGHFNIFVGDLSPEV---------TDATLFACFSVYPSCSDARVMWDQKTGRSRGF 77 (320)
Q Consensus 8 g~~~~g~~i~v~~~~~~~-~~~~~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~ 77 (320)
...+.|+++......... .......+++|||+||+.++ +|++|+++|++||+|++|+|+. ++||
T Consensus 108 ~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~ 181 (240)
T 3u1l_A 108 VLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNC 181 (240)
T ss_dssp SBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTE
T ss_pred CcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCE
Confidence 345556654333222211 12235568999999999998 7999999999999999999985 4689
Q ss_pred EEEEecCHHHHHHHHHHhCCCee------------CCeeEEEEeccCCCCC
Q 020857 78 GFVSFRNQQDAQSAINDLTGKWL------------GSRQIRCNWATKGAGN 116 (320)
Q Consensus 78 afV~f~~~~~A~~A~~~l~~~~~------------~g~~l~v~~a~~~~~~ 116 (320)
|||+|.+.++|+.|++.|+|..+ .|+.|.|.|+...+.+
T Consensus 182 AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 182 GFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp EEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 99999999999999999999999 8999999999876543
No 306
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=5.6e-16 Score=116.86 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=70.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC---CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEec
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWG 230 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~---~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a 230 (320)
.++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|+..||+. .+.|+.|+|.|+
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a 82 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYG--PIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF---NVSNRYLVVLYY 82 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC---BSSSCBCEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEEe
Confidence 47999999999999999999999999 9999999754 789999999999999999999999 999999999998
Q ss_pred CCC
Q 020857 231 SKP 233 (320)
Q Consensus 231 ~~~ 233 (320)
.+.
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 653
No 307
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=6.8e-16 Score=122.91 Aligned_cols=78 Identities=29% Similarity=0.413 Sum_probs=71.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
.+.++|||+|||.++++++|+++|++|| .|..|.+.++ +|||||+|.+.++|.+|++.||+. .|.|+.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSG--DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT---RLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 3458999999999999999999999999 8999999754 589999999999999999999999 9999999
Q ss_pred EEEecCCCC
Q 020857 226 KCSWGSKPT 234 (320)
Q Consensus 226 ~v~~a~~~~ 234 (320)
+|.|+++..
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999997644
No 308
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-17 Score=115.16 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=69.1
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~~~ 78 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYG--KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS---GVQAQMAK 78 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTS--CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH---TCCEESCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC---eEeeEEEe
Confidence 347999999999999999999999999 9999998765 789999999999999999999999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
++|+++
T Consensus 79 ~~~~~s 84 (85)
T 1x4e_A 79 QSGPSS 84 (85)
T ss_dssp SSCCCC
T ss_pred ecCCCC
Confidence 987643
No 309
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=9.4e-16 Score=111.30 Aligned_cols=75 Identities=19% Similarity=0.335 Sum_probs=66.7
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCc-EEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.++|||+|||.++++++|+++|++|| .|.+|.+.+..+ ||||+|.+.++|.+|++ ||+. .++|+.|+|.++..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~---~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFG--PVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQH---SLGGHRLRVRPREQ 81 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTS--CEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCC---EETTEECCCBCSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcC--CeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCe---EECCEEEEEEECCc
Confidence 37899999999999999999999999 898884444433 99999999999999999 9999 99999999998865
Q ss_pred CC
Q 020857 233 PT 234 (320)
Q Consensus 233 ~~ 234 (320)
+.
T Consensus 82 ~~ 83 (94)
T 2e5g_A 82 KE 83 (94)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 310
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=117.38 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=71.1
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|..+.+.++ +|||||+|.+.++|.+|++. ++. .+.|+.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~---~~~g~~l 98 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWG--KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH---SIDGRVV 98 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSC--CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc---EECCEEE
Confidence 3458999999999999999999999999 8999988765 68999999999999999998 998 9999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|+.++..
T Consensus 99 ~V~~a~~~~~ 108 (116)
T 1x4b_A 99 EPKRAVAREE 108 (116)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCcc
Confidence 9999977644
No 311
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=5.9e-16 Score=122.32 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=69.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--CcEEEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEEe
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCSW 229 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~~ 229 (320)
..+|||+||++++++++|+++|++|| .|++|.+... +|||||+|.+.++|.+|++.|||. .|.| +.|+|.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG--~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~---~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHS--CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTB---CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCcEEEEEE
Confidence 46799999999999999999999999 9999998643 679999999999999999999999 8965 9999999
Q ss_pred cCCCC
Q 020857 230 GSKPT 234 (320)
Q Consensus 230 a~~~~ 234 (320)
++.+.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98763
No 312
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=119.58 Aligned_cols=76 Identities=33% Similarity=0.574 Sum_probs=69.7
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
...+.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFG--DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES---ELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGS--CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE---EETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC---EECCE
Confidence 334568999999999999999999999999 9999999765 799999999999999999999999 99999
Q ss_pred EeEEEec
Q 020857 224 QMKCSWG 230 (320)
Q Consensus 224 ~l~v~~a 230 (320)
.|+|+||
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999985
No 313
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.65 E-value=5.3e-16 Score=115.80 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=68.4
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
....++|||+|||.++++++|+++|+.|| .|.++++.++ +|||||+|.+.++|.+|++.++ . .++|+.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~---~l~g~~ 95 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H---ELDSKT 95 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTS--CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E---EETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccC--CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C---cCCCEE
Confidence 34458899999999999999999999999 9999999765 6899999999999999999875 7 899999
Q ss_pred eEEEecCCCC
Q 020857 225 MKCSWGSKPT 234 (320)
Q Consensus 225 l~v~~a~~~~ 234 (320)
|+|.++..+.
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 314
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=8.3e-16 Score=118.71 Aligned_cols=85 Identities=26% Similarity=0.396 Sum_probs=71.2
Q ss_pred CCCCCcceEEEECCCCccCcHHHHHHHHhccCCccEEE--EEeeCC------CcEEEEEeCCHHHHHHHHHHcCCC-Ccc
Q 020857 148 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--VRVQRD------KGFGFVRYSTHAEAALAIQMGNTT-QSS 218 (320)
Q Consensus 148 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~--~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~-~~~ 218 (320)
+......++|||+|||+++++++|+++|++|| .|.. |++.++ +|||||+|.+. +|.+|+..||+. ...
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G--~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYA--VLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGC--CCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 33445568999999999999999999999999 7755 777755 69999999999 999999999995 111
Q ss_pred cccCeEeEEEecCCCCC
Q 020857 219 YLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 219 ~~~g~~l~v~~a~~~~~ 235 (320)
.+.|+.|+|.|+++...
T Consensus 94 ~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CGGGCCCCCEECCCSCC
T ss_pred cCCCEEEEEEECCCCCC
Confidence 48999999999976543
No 315
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7e-16 Score=117.48 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=69.9
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcE-EEEEeCCHHHHHHHHHHcCCCCcccccC--eEeEEE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKCS 228 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~g--~~l~v~ 228 (320)
....|||+||++.+|+++|+++|++|| .|.+|++.+. +|+ |||+|.+.++|..|++.|||. .+.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~---~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTC---EEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCC---eecCCCcEEEEE
Confidence 346788999999999999999999999 9999988654 677 999999999999999999999 9988 999999
Q ss_pred ecCCCC
Q 020857 229 WGSKPT 234 (320)
Q Consensus 229 ~a~~~~ 234 (320)
|++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998754
No 316
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=112.10 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=68.7
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++ ++. .++|+.|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~---~~~g~~l 85 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFG--EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRH---MIDGRWC 85 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCE---EETTEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcC--CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCC---eeCCeEE
Confidence 3447899999999999999999999999 8999998765 5799999999999999998 466 8999999
Q ss_pred EEEecCCCCC
Q 020857 226 KCSWGSKPTP 235 (320)
Q Consensus 226 ~v~~a~~~~~ 235 (320)
+|.|+.++..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999977644
No 317
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=114.65 Aligned_cols=77 Identities=21% Similarity=0.448 Sum_probs=69.9
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccc------
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYL------ 220 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~------ 220 (320)
...++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+|++.||+. .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~---~~~~~~~~ 97 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFG--QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK---FIKTPPGV 97 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTC---CCCCCTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC---EEcCCccc
Confidence 3447899999999999999999999999 8999999865 689999999999999999999999 88
Q ss_pred --cCeEeEEEecCCC
Q 020857 221 --FGKQMKCSWGSKP 233 (320)
Q Consensus 221 --~g~~l~v~~a~~~ 233 (320)
.+++|+|.|+.++
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998743
No 318
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=5.4e-16 Score=110.87 Aligned_cols=73 Identities=21% Similarity=0.417 Sum_probs=66.1
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
...++|||+|||.++++++|+++|++|| .|..+.+.++ +|+|||+|.+.++|.+|++. ++. .++|+.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~---~~~g~~i 82 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFG--EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH---RLDGRVI 82 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTS--CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCE---EETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCC---EECCEEE
Confidence 3448999999999999999999999999 9999998755 68999999999999999964 788 8999999
Q ss_pred EEEec
Q 020857 226 KCSWG 230 (320)
Q Consensus 226 ~v~~a 230 (320)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 319
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=5e-16 Score=118.79 Aligned_cols=77 Identities=27% Similarity=0.468 Sum_probs=70.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|+ .||+. .+.|+.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~---~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCG--SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET---VFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTS--CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC---eECCeEEE
Confidence 348999999999999999999999999 9999998754 789999999999999999 89999 99999999
Q ss_pred EEecCCCCC
Q 020857 227 CSWGSKPTP 235 (320)
Q Consensus 227 v~~a~~~~~ 235 (320)
|.|++....
T Consensus 109 V~~a~~~~~ 117 (124)
T 2jwn_A 109 VLPKRTNMP 117 (124)
T ss_dssp EEESSCCCS
T ss_pred EEECCCCCC
Confidence 999876543
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=3.9e-16 Score=113.77 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEE-EeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~-~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
....++|||+|||.++++++|+++|++|| .|..+ ...+.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g--~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEE--EECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEE---EETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCC--cEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEE
Confidence 34558999999999999999999999999 66666 22234799999999999999999999999 99999999999
Q ss_pred cCCCCC
Q 020857 230 GSKPTP 235 (320)
Q Consensus 230 a~~~~~ 235 (320)
++++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 976543
No 321
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=122.90 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=69.6
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||+++++++|+++|++||...|.++++.++ +|||||+|.+.++|.+|++.||+. .++|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~---~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK---VLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCeEeE
Confidence 347999999999999999999999999557889988755 689999999999999999999999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
|.++.+
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 999854
No 322
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=112.52 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=67.9
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee---CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.+.++|||+|||.++++++|+++|+.|+ .+..+... +.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~ 87 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG---EIDGNKVTLD 87 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEE
Confidence 3458899999999999999999999886 55444332 22689999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q 020857 229 WGSKPTPP 236 (320)
Q Consensus 229 ~a~~~~~~ 236 (320)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876543
No 323
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=6.8e-16 Score=116.38 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=66.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE-----eEE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-----MKC 227 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~-----l~v 227 (320)
..++|||+|||+++++++|+++|++|| .|.++.+..+ |||||+|.+.++|.+|++.||+. .+.|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC---BCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC---EECCcEeeeEEEEe
Confidence 347899999999999999999999999 9999999988 99999999999999999999999 999988 666
Q ss_pred EecCCC
Q 020857 228 SWGSKP 233 (320)
Q Consensus 228 ~~a~~~ 233 (320)
..+...
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 665543
No 324
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=6.2e-16 Score=110.80 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=68.7
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKP 233 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~ 233 (320)
.++|||+|||+++++++|+++|++| .|.++++.+.+|+|||+|.+.++|.+|++.||+. .+.|+.|+|+|+...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY---SFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE---EETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC---eECCcEEEEEEcCCC
Confidence 3789999999999999999999999 4777777788999999999999999999999999 999999999998654
Q ss_pred C
Q 020857 234 T 234 (320)
Q Consensus 234 ~ 234 (320)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=112.22 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=67.2
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCc---cEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAG---VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~---~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
..++|||+|||.++++++|+++|++||.+ .+.+....+.+|||||+|.+.++|.+|++ ||+. .+.|+.|+|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~---~~~g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL---KVFGNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC---CBTTBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc---EECCcEEEEEE
Confidence 45899999999999999999999999921 22333445568999999999999999998 9999 99999999999
Q ss_pred cCCCCC
Q 020857 230 GSKPTP 235 (320)
Q Consensus 230 a~~~~~ 235 (320)
++++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 326
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=1.8e-16 Score=115.35 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=65.5
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeC------CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~------~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
+.++|||+|||.++++++|+++|++|| .|..+.+.. .+|+|||+|.+.++|.+|++.||+. .+.|+.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~l~ 88 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQ--VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR---PIGSRKVK 88 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSC--BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC---eECCcEEE
Confidence 348999999999999999999999999 665554443 3689999999999999999999999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
|.++++
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 999754
No 327
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=109.93 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=63.8
Q ss_pred eEEEECCCCccC------cHHHHHHHHhccCCccEEEEEeeCC----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe-
Q 020857 155 TTVYVGNLAPEV------TQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK- 223 (320)
Q Consensus 155 ~~l~V~nl~~~~------t~~~l~~~F~~~G~~~i~~~~~~~~----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~- 223 (320)
++|||+|||.++ ++++|+++|++|| .|.++.+.+. +|||||+|.+.++|.+|++.||+. .+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~---~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFG--KITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY---KLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTC--CEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC---CCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcC--CeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc---ccCCce
Confidence 689999999999 7899999999999 9999998843 799999999999999999999999 99999
Q ss_pred EeEEE
Q 020857 224 QMKCS 228 (320)
Q Consensus 224 ~l~v~ 228 (320)
.|+|+
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88763
No 328
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=9.1e-16 Score=116.61 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=70.4
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.+.++|||+|+ ++++++|+++|++|| .|.++.+.+.+|||||+|.+.++|.+|++.||+. .+.|+.|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~---~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC---BCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEEeC
Confidence 34589999996 699999999999999 8999999999999999999999999999999999 9999999999997
Q ss_pred CCC
Q 020857 232 KPT 234 (320)
Q Consensus 232 ~~~ 234 (320)
++.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 329
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=3.2e-16 Score=108.71 Aligned_cols=69 Identities=22% Similarity=0.443 Sum_probs=64.1
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
+|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++ +|+. .++|+.|+|+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~---~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFG--KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH---EINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTS--CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC---CSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC---EECCEEEEEEe
Confidence 489999999999999999999999 8989988755 5899999999999999997 8999 99999999998
Q ss_pred c
Q 020857 230 G 230 (320)
Q Consensus 230 a 230 (320)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 330
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.2e-16 Score=114.99 Aligned_cols=74 Identities=27% Similarity=0.466 Sum_probs=66.5
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.+ |.+|+..||+. .++|+.|+|+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~---~~~g~~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFG--KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT---DFMGRTIRVT 75 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHT--CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS---CCSSSSCSEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcC--CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC---EECCeEEEEE
Confidence 6899999999999999999999999 8999998754 789999999999 99999999999 9999999999
Q ss_pred ecCCCC
Q 020857 229 WGSKPT 234 (320)
Q Consensus 229 ~a~~~~ 234 (320)
++....
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 987654
No 331
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3e-15 Score=110.69 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=67.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEE-EEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~-~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||+++++++|+++|++|| .|.+ +.+..+ +|||||+|.+.++|.+|++. |+. .++|+.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~---~~~gr~i~ 87 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLE--IVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKE---RIGHRYIE 87 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCC--EEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTC---CSSSSCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccc---hhCCcEEE
Confidence 447999999999999999999999999 8877 777643 79999999999999999998 999 99999999
Q ss_pred EEecCCCC
Q 020857 227 CSWGSKPT 234 (320)
Q Consensus 227 v~~a~~~~ 234 (320)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99986543
No 332
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=1.3e-15 Score=114.69 Aligned_cols=81 Identities=11% Similarity=0.224 Sum_probs=71.7
Q ss_pred CceeEEEcCCCc--c---CcHHHHHHHhccCCCeeEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhCCCeeCC
Q 020857 32 GHFNIFVGDLSP--E---VTDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 102 (320)
Q Consensus 32 ~~~~l~V~nLp~--~---~te~~l~~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g 102 (320)
++++|+|+|+-. + --++||++.|++||.|.+|+|++++. ++.++||+||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999942 2 24789999999999999999999864 46788999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 020857 103 RQIRCNWATK 112 (320)
Q Consensus 103 ~~l~v~~a~~ 112 (320)
|.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 333
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.3e-15 Score=112.64 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCceeEEEcCC--CccC--------cHHHHHHHhccCCCeeEEEEeecCCC--CCccceEEEEecCHHHHHHHHHHhCCC
Q 020857 31 SGHFNIFVGDL--SPEV--------TDATLFACFSVYPSCSDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGK 98 (320)
Q Consensus 31 ~~~~~l~V~nL--p~~~--------te~~l~~~F~~~G~i~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~A~~~l~~~ 98 (320)
.+++.|.|+|+ |.++ .++||++.|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 4444 34799999999999999999998754 468999999999999999999999999
Q ss_pred eeCCeeEEEEeccC
Q 020857 99 WLGSRQIRCNWATK 112 (320)
Q Consensus 99 ~~~g~~l~v~~a~~ 112 (320)
.+.||+|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 334
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=110.21 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=69.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEE-eeCC--CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-VQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~-~~~~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
..++|||+|||.++++++|+++|++|| .|.+++ +..+ .+.|||+|.+.++|.+|++.||+. .+.|+.|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF---QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS--CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEE
Confidence 347899999999999999999999999 999994 7765 456999999999999999999999 99999999999
Q ss_pred cCCC
Q 020857 230 GSKP 233 (320)
Q Consensus 230 a~~~ 233 (320)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.2e-16 Score=121.01 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=66.5
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCcc---EEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV---IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~---i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
..++|||+|||+++|+++|+++|+.|| . |..+++.++ +|||||+|.+.++|.+|++ +|+. .++|+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~---~~~gr~ 89 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCT--IHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRE---SMGHRY 89 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSC--BTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTE---EETTEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC---eECCeE
Confidence 448899999999999999999999999 5 677777643 7899999999999999999 9999 999999
Q ss_pred eEEEecCC
Q 020857 225 MKCSWGSK 232 (320)
Q Consensus 225 l~v~~a~~ 232 (320)
|+|.++..
T Consensus 90 i~V~~a~~ 97 (118)
T 2db1_A 90 IEVFKSHR 97 (118)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
Confidence 99998754
No 336
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=3.5e-16 Score=109.10 Aligned_cols=70 Identities=27% Similarity=0.435 Sum_probs=65.0
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
++|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++.++ . .++|+.|+|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~---~~~g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFG--EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H---ELDSKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTS--CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C---CCSSCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C---ccCCEEEEEE
Confidence 3699999999999999999999999 8888888765 6899999999999999999999 7 8999999999
Q ss_pred ec
Q 020857 229 WG 230 (320)
Q Consensus 229 ~a 230 (320)
++
T Consensus 75 ~a 76 (77)
T 1uaw_A 75 VA 76 (77)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 337
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.62 E-value=1.3e-15 Score=128.44 Aligned_cols=79 Identities=24% Similarity=0.441 Sum_probs=71.8
Q ss_pred CCcceEEEECCCCccC---------cHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccc-
Q 020857 151 NPQYTTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL- 220 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~---------t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~- 220 (320)
...+++|||+||+.++ ++++|+++|++|| .|.+|++.+++|||||+|.+.++|..|++.|++. .+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~---~l~ 205 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ---TLL 205 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC---CCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC---EEe
Confidence 3455899999999998 7999999999999 9999999999999999999999999999999999 88
Q ss_pred -----------cCeEeEEEecCCCC
Q 020857 221 -----------FGKQMKCSWGSKPT 234 (320)
Q Consensus 221 -----------~g~~l~v~~a~~~~ 234 (320)
.|+.|.|.|++...
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 338
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=108.39 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=66.7
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
..++|||+|||.++++++|+++|+.| .|.++++.++ +|+|||+|.+.++|.+|++ ||+. .++|+.|+|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~---~~~gr~i~v 81 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNRE---YMGGRYIEV 81 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSE---EETTEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC---CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCc---eeCCcEEEE
Confidence 34799999999999999999999999 3667777654 7899999999999999999 9999 999999999
Q ss_pred EecCCC
Q 020857 228 SWGSKP 233 (320)
Q Consensus 228 ~~a~~~ 233 (320)
.+++++
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 998765
No 339
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=7.8e-16 Score=113.06 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=67.0
Q ss_pred CCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 151 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
....++|||+|||.++++++|+++|+.|| |.++++.++ +|||||+|.+.++|.+|+ .||+. .++|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G---i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~---~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN---ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE---SLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC---EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC---CBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC---EECCe
Confidence 34558999999999999999999999998 888888754 689999999999999999 89999 99999
Q ss_pred EeEEEecCCC
Q 020857 224 QMKCSWGSKP 233 (320)
Q Consensus 224 ~l~v~~a~~~ 233 (320)
.|+|.++++.
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 9999998764
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=3e-15 Score=106.88 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=67.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhcc----CCc-----cEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSL----GAG-----VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 223 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~~-----~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~ 223 (320)
..++|||+|||.++++++|+++|++| |.. .|.++.+.+++|||||+|.+.++|.+|+ .||+. .+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~---~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI---IFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC---EECCe
Confidence 34899999999999999999999999 611 6999999999999999999999999999 99999 99999
Q ss_pred EeEEEe
Q 020857 224 QMKCSW 229 (320)
Q Consensus 224 ~l~v~~ 229 (320)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 341
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.61 E-value=3e-15 Score=107.36 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=62.4
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
+.++|||+|||+++|+++|+++|++|| .|.++++.++ +|||||+|.+.++|.+ +++. ...+.|+.|.|.++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G--~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYG--EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGE-DLIIKGISVHISNAE 82 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCSSCCSEEEEEESCHHHHHH----HTTC-EEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCC-CcccCCEEEEEEEcC
Confidence 447999999999999999999999999 9999999875 8999999999999983 4565 114569999999987
Q ss_pred CCC
Q 020857 232 KPT 234 (320)
Q Consensus 232 ~~~ 234 (320)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 653
No 342
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.60 E-value=5.7e-16 Score=114.40 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=65.6
Q ss_pred EcCCCccCcHHHHHHHh------------ccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 020857 38 VGDLSPEVTDATLFACF------------SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 105 (320)
Q Consensus 38 V~nLp~~~te~~l~~~F------------~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l 105 (320)
+.|||+++++++|++.| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|++.|||..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 66788888888887766 999999999999986 58999999999999999999999999999999999
Q ss_pred EEEec
Q 020857 106 RCNWA 110 (320)
Q Consensus 106 ~v~~a 110 (320)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 343
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=114.52 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=67.2
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccE-EEEEeeC-----CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI-EEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i-~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||+++++++|+++|+.|| .| ..+++.+ .+|||||+|.+.++|.+|++. |+. .+.|+.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~---~~~gr~i~ 87 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIP--VDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRK---KLNGREAF 87 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSC--CCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSE---EETTEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCC--CcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCC---ccCCeEEE
Confidence 347899999999999999999999999 77 6677764 489999999999999999987 999 99999999
Q ss_pred EEecCCC
Q 020857 227 CSWGSKP 233 (320)
Q Consensus 227 v~~a~~~ 233 (320)
|.++..+
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 344
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=109.92 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=65.7
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKC 227 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v 227 (320)
..++|||+|||+++++++|+++|++|| .+ ++++.++ +|||||+|.+.++|.+|+ .+|+. .+.|+.|+|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~---~~~gr~i~V 86 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN--PM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKA---NMQHRYVEL 86 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC--CS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSC---CSSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC--ce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCC---eECCcEEEE
Confidence 347999999999999999999999999 44 7777644 789999999999999999 47999 999999999
Q ss_pred EecCCCC
Q 020857 228 SWGSKPT 234 (320)
Q Consensus 228 ~~a~~~~ 234 (320)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9876544
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=116.16 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=67.9
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEE--------EE---EeeCCCcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE--------EV---RVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~--------~~---~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
+.++|||+|||.++++++|+++|++|| .|. ++ ...+.+|||||+|.+.++|.+|+..||+. .+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~---~~~ 118 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYV--DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY---VLF 118 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGC--CTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB---EET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC--CcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC---EeC
Confidence 448999999999999999999999999 443 23 33456899999999999999999999999 999
Q ss_pred CeEeEEEecCCCCC
Q 020857 222 GKQMKCSWGSKPTP 235 (320)
Q Consensus 222 g~~l~v~~a~~~~~ 235 (320)
|+.|+|.|+++..+
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999976543
No 346
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=108.39 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=64.5
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.++|||+|||.++++++|+++|++|| .|.++++.++ +|||||+|.+.++|.+| ++. ...+.|+.|+|.++.+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPKPFRAFAFVTFADDQIAQSL----CGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEECCSSCCSCCEEECSCHHHHHHT----TTC-EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEEecCCCCEEEEEECCHHHHHHH----hcC-CceeCCEEEEEEecCC
Confidence 37999999999999999999999999 8999999876 89999999999999754 444 1156899999999876
Q ss_pred CCC
Q 020857 233 PTP 235 (320)
Q Consensus 233 ~~~ 235 (320)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 347
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=1.2e-15 Score=117.95 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=66.0
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCcc---EEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV---IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~---i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
..++|||+|||+++|+++|+++|++|| . |.++++.++ +|||||+|.+.++|.+|++ +|+. .++|+.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~---~l~gr~ 116 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCT--IHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRE---SMGHRY 116 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCC--CSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEE---ESSSSE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC--CcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC---EECCEE
Confidence 347899999999999999999999999 5 677777643 7899999999999999999 9999 999999
Q ss_pred eEEEecC
Q 020857 225 MKCSWGS 231 (320)
Q Consensus 225 l~v~~a~ 231 (320)
|+|.++.
T Consensus 117 i~V~~a~ 123 (136)
T 2hgl_A 117 IEVFKSH 123 (136)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999874
No 348
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=109.47 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=65.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
...++|||+|||+++++++|+++|+.| .|.++++..+ +|+|||+|.+.++|.+|+ .+|+. .++|+.|+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~---~~~gr~i~ 86 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRM---LMIQRYVE 86 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTE---EETTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCC---eECCeEEE
Confidence 345799999999999999999999999 4778888643 799999999999999999 68999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 987643
No 349
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=112.99 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=66.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCcc---EEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV---IEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~---i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
..++|||+|||+++|+++|+++|+.|| . |.++++.++ +|+|||+|.+.++|.+|++ +|+. .++|+.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g--~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~---~~~gr~ 83 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCR--IRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRM---YMGQRY 83 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSC--BTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTC---CSSSSC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcC--CcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcc---eeCCeE
Confidence 448899999999999999999999998 5 778888654 7899999999999999999 9999 999999
Q ss_pred eEEEecCC
Q 020857 225 MKCSWGSK 232 (320)
Q Consensus 225 l~v~~a~~ 232 (320)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998754
No 350
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=116.00 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=64.2
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEE-Eee-----CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-RVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~-~~~-----~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+|||+++++++|+++|+.|| .|.++ .+. +.+|||||+|.+.++|.+|++ +|+. .|+|+.|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~---~~~gr~i~ 97 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLD--IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ---YMGNRFIQ 97 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSC--BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB---CSTTSCBE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC---eECCcEEE
Confidence 448999999999999999999999999 66542 222 237999999999999999999 9999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
|.++..
T Consensus 98 V~~a~~ 103 (124)
T 1wel_A 98 VHPITK 103 (124)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999754
No 351
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=1.9e-15 Score=111.33 Aligned_cols=76 Identities=22% Similarity=0.477 Sum_probs=69.0
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
...++|||+|||.++++++|+++|++|| .|.++.+.++ +|||||+|.+.++|.+|++ ++. .++|+.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~---~~~g~~l~ 79 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYG--SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQI---NFHGKKLK 79 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCC---EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCC---eECCEEEE
Confidence 3458999999999999999999999999 9999999864 6999999999999999998 888 99999999
Q ss_pred EEecCCCC
Q 020857 227 CSWGSKPT 234 (320)
Q Consensus 227 v~~a~~~~ 234 (320)
|.++.++.
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99986543
No 352
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.8e-16 Score=119.79 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=70.6
Q ss_pred CcceEEEECCCCccCcHHHHHHHHhccCCccEEE--------EEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCc
Q 020857 152 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE--------VRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQS 217 (320)
Q Consensus 152 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~--------~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~ 217 (320)
.+.++|||+|||.++++++|+++|++|| .|.. +.+..+ +|||||+|.+.++|.+|++.||+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-- 80 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-- 80 (116)
Confidence 3447899999999999999999999999 7877 767654 689999999999999999999999
Q ss_pred ccccCeEeEEEecCCCCC
Q 020857 218 SYLFGKQMKCSWGSKPTP 235 (320)
Q Consensus 218 ~~~~g~~l~v~~a~~~~~ 235 (320)
.+.|+.|+|.|++++..
T Consensus 81 -~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 81 -EFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999999876543
No 353
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.5e-15 Score=105.33 Aligned_cols=69 Identities=16% Similarity=0.387 Sum_probs=63.4
Q ss_pred EEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 156 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 156 ~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
+|||+|||.++++++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+|++. ++. .+.|+.|+|++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~---~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFG--EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH---NVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHS--CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC---CBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC---eECCEEEEEEE
Confidence 489999999999999999999999 8999988654 78999999999999999985 888 89999999987
Q ss_pred c
Q 020857 230 G 230 (320)
Q Consensus 230 a 230 (320)
+
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 354
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.57 E-value=1.5e-15 Score=117.80 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=65.7
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.++|||+|||+++|+++|+++|++|| .+ +|++.++ +|||||+|.+.++|.+|+ .+|+. .+.|+.|+|.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G--i~-~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~---~l~gR~i~V~ 118 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN--PV-RVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRA---NMQHRYIELF 118 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC--CS-EEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSC---SSSSCCCCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--Ce-EEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCC---EECCEEEEEE
Confidence 37899999999999999999999999 33 7877754 789999999999999999 78999 9999999999
Q ss_pred ecCCCC
Q 020857 229 WGSKPT 234 (320)
Q Consensus 229 ~a~~~~ 234 (320)
++..+.
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 876543
No 355
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=8.3e-15 Score=118.84 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=72.1
Q ss_pred CCCcceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 150 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.....++|||+|||.++++++|+++|++|| .|..|.+..+ +|+|||+|.+.++|.+|++.||+. .+.|+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~---~l~Gr~ 158 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFG--TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV---PLDGRP 158 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTS--CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC---BCSSSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC---EECCEE
Confidence 334568999999999999999999999999 8899998754 799999999999999999999999 999999
Q ss_pred eEEEecCCC
Q 020857 225 MKCSWGSKP 233 (320)
Q Consensus 225 l~v~~a~~~ 233 (320)
|+|.|+...
T Consensus 159 l~V~~a~~~ 167 (177)
T 2f3j_A 159 MDIQLVASQ 167 (177)
T ss_dssp CEEEEESSG
T ss_pred EEEEEecCC
Confidence 999998654
No 356
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=4.3e-15 Score=125.60 Aligned_cols=77 Identities=27% Similarity=0.351 Sum_probs=69.2
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
..++|||+||++++|+++|+++|++||...|++|+|.++ +|||||+|.+.++|.+|++.||+. .|.|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~---~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR---ELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS---CBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---eECCEEeE
Confidence 347899999999999999999999999446888888765 689999999999999999999999 99999999
Q ss_pred EEecCC
Q 020857 227 CSWGSK 232 (320)
Q Consensus 227 v~~a~~ 232 (320)
|.|+++
T Consensus 144 V~~a~~ 149 (229)
T 3q2s_C 144 VTPVNK 149 (229)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 999864
No 357
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.4e-14 Score=102.18 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=58.5
Q ss_pred ccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeccCCCC
Q 020857 43 PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 115 (320)
Q Consensus 43 ~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~~~~~ 115 (320)
.++||++|+++|++||.|.+|+|+ ++++|||||+|.+.++|..|++.+++ +.|++|+|.|+..+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 579999999999999999999997 36899999999999999999987544 6799999999876543
No 358
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=1.7e-14 Score=109.76 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=63.8
Q ss_pred cceEEEECCCCccCcHHHHHHHHhccCCccEE--EEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEe
Q 020857 153 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIE--EVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 225 (320)
Q Consensus 153 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~--~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l 225 (320)
..++|||+|||+++|+++|+++|+.|+ |. +|++.++ +|||||+|.+.++|.+|++. ++. .++|+.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~---i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~---~l~gR~I 113 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLE---IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKE---RIGHRYI 113 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSC---EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTC---CBTTBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCC---ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCC---EECCEEE
Confidence 447899999999999999999999995 44 8888754 79999999999999999985 677 8999999
Q ss_pred EEEecC
Q 020857 226 KCSWGS 231 (320)
Q Consensus 226 ~v~~a~ 231 (320)
+|.++.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998874
No 359
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-14 Score=110.54 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=63.5
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCc--cEEEEEeeC-----CCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAG--VIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 226 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~--~i~~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~ 226 (320)
.++|||+|||+++|+++|+++|++||.+ .|.+|++.. .+|||||+|.+.++|.+|++. |+. .++|+.|+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~---~l~gR~i~ 98 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKD---LLGKRYIE 98 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTE---ESSSCEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCC---eeCCeEEE
Confidence 3789999999999999999999999832 135666653 379999999999999999986 888 99999999
Q ss_pred EEecC
Q 020857 227 CSWGS 231 (320)
Q Consensus 227 v~~a~ 231 (320)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 360
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.50 E-value=9.3e-14 Score=102.53 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=65.8
Q ss_pred cceEEEECCCCc-----cCcHHHHHHHHhccCCccEEEEEeeCC-------CcEEEEEeCCHHHHHHHHHHcCCCCcccc
Q 020857 153 QYTTVYVGNLAP-----EVTQLDLHRHFHSLGAGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYL 220 (320)
Q Consensus 153 ~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~~~i~~~~~~~~-------~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 220 (320)
++++|+|.||.. +-++++|++.|++|| .|.++.+.++ +|++||+|.+.++|.+|+..|||+ ++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G--~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~---~~ 81 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYG--KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR---YF 81 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGS--CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC---EE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcC--CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC---EE
Confidence 347899999963 237899999999999 9999998743 799999999999999999999999 99
Q ss_pred cCeEeEEEecCC
Q 020857 221 FGKQMKCSWGSK 232 (320)
Q Consensus 221 ~g~~l~v~~a~~ 232 (320)
+|+.|+|.|+..
T Consensus 82 ~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 82 GGRVVKACFYNL 93 (105)
T ss_dssp TTEECEEEECCH
T ss_pred CCcEEEEEEcCH
Confidence 999999999853
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=1.7e-13 Score=112.77 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=66.1
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
.++|||+|||.++++++|+++|++|| .|..+++.++ +|+|||+|.+.++|.+|+..+ +. .+.|+.|+|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~---~~~Gr~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQ---KYKETDLLIL 182 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSC--CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TC---EETTEECEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CC---eECCEEEEEE
Confidence 37899999999999999999999999 8999998863 799999999999999999765 45 7999999999
Q ss_pred ecCC
Q 020857 229 WGSK 232 (320)
Q Consensus 229 ~a~~ 232 (320)
|++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 9764
No 362
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.48 E-value=7.1e-14 Score=123.99 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=66.5
Q ss_pred CCCCceeEEEcC--CCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCee---CCe
Q 020857 29 DTSGHFNIFVGD--LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSR 103 (320)
Q Consensus 29 ~~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~---~g~ 103 (320)
.+.++++|||+| |++++||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||+.+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 578999999999999999999987753 579999999999999999999999987 345
Q ss_pred --eEEEEecc
Q 020857 104 --QIRCNWAT 111 (320)
Q Consensus 104 --~l~v~~a~ 111 (320)
.|.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67788764
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-13 Score=99.47 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=66.1
Q ss_pred cceEEEECCCCccC-----------cHHHHHHHHhccCCccEEEEEeeC--CCcEEEEEeCCHHHHHHHHHHcCCCCccc
Q 020857 153 QYTTVYVGNLAPEV-----------TQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSSY 219 (320)
Q Consensus 153 ~~~~l~V~nl~~~~-----------t~~~l~~~F~~~G~~~i~~~~~~~--~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 219 (320)
+.++|+|.||.... ++++|+++|++|| .|.++.+.. .+|+|||+|.+.++|.+|+..||+. .
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~---~ 88 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR---W 88 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC---E
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC---E
Confidence 45899999994432 2689999999999 888887652 3899999999999999999999999 9
Q ss_pred ccCeEeEEEecCCCC
Q 020857 220 LFGKQMKCSWGSKPT 234 (320)
Q Consensus 220 ~~g~~l~v~~a~~~~ 234 (320)
++|+.|+|.|+.+..
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987653
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.9e-14 Score=104.27 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=57.9
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEee---------CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ---------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~---------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
.++|||+|||.++++++|+++|++|| .|. +.+. +.+|||||+|.+.++|.+|++.|+ .++|+.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G--~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-----~~~G~~ 79 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFG--PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-----EEDGKL 79 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTC--CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-----EETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC--CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-----hcCCcE
Confidence 37899999999999999999999999 676 5554 347999999999999999999884 456666
Q ss_pred eEEEec
Q 020857 225 MKCSWG 230 (320)
Q Consensus 225 l~v~~a 230 (320)
+.+..+
T Consensus 80 ~~~~~~ 85 (114)
T 2dnl_A 80 YLCVSS 85 (114)
T ss_dssp EEEECC
T ss_pred EEeccC
Confidence 666544
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.47 E-value=2.7e-13 Score=101.36 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=67.4
Q ss_pred CCCceeEEEcCCCcc----------CcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCe
Q 020857 30 TSGHFNIFVGDLSPE----------VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 99 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~----------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~ 99 (320)
..+++.|.+.|+=.. --++||++.|++||.|.+|.|.++. .+||+||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 346778999888432 2345899999999999999997652 58999999999999999999999999
Q ss_pred eCCeeEEEEeccC
Q 020857 100 LGSRQIRCNWATK 112 (320)
Q Consensus 100 ~~g~~l~v~~a~~ 112 (320)
+.||.|.|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999853
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.43 E-value=3.7e-13 Score=119.38 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCcceEEEECC--CCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccc---cCe--
Q 020857 151 NPQYTTVYVGN--LAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL---FGK-- 223 (320)
Q Consensus 151 ~~~~~~l~V~n--l~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~---~g~-- 223 (320)
..++++|||+| |+.++|+++|+++|++|| .|.++.+.++||||||+|.+.++|.+|++.|||. ++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~---~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK---EVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTC---EEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---ccccccCCce
Confidence 34558999999 578999999999999999 9999999999999999999999999999999999 66 344
Q ss_pred EeEEEecC
Q 020857 224 QMKCSWGS 231 (320)
Q Consensus 224 ~l~v~~a~ 231 (320)
.|.|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68889875
No 367
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.42 E-value=1.5e-13 Score=102.82 Aligned_cols=73 Identities=12% Similarity=0.269 Sum_probs=63.5
Q ss_pred eEEEECCC----CccCcHHHHHHHHhccCCccEEEEEeeCC------CcEEEEEeCC----HHH----HHHHHH--HcCC
Q 020857 155 TTVYVGNL----APEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYST----HAE----AALAIQ--MGNT 214 (320)
Q Consensus 155 ~~l~V~nl----~~~~t~~~l~~~F~~~G~~~i~~~~~~~~------~g~afV~f~~----~~~----A~~A~~--~l~~ 214 (320)
+.|||+|| |+.+++++|+++|+.|| +|.++.+..| +|||||+|.+ +++ |.+|+. .+|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fG--eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYG--EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTS--CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 57999999 99999999999999999 8888888755 7999999996 333 888988 7899
Q ss_pred CCcccccCeEeEEEecCC
Q 020857 215 TQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 215 ~~~~~~~g~~l~v~~a~~ 232 (320)
. .|+|+.|+|.+.+.
T Consensus 81 ~---~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 C---FIMGFKFEVILNKH 95 (136)
T ss_dssp E---EETTEEEEEEECCT
T ss_pred C---eecCcEEEEEECcc
Confidence 9 99999999998654
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=6.2e-13 Score=98.11 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=64.9
Q ss_pred cceEEEECCC--CccCc--------HHHHHHHHhccCCccEEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHcCC
Q 020857 153 QYTTVYVGNL--APEVT--------QLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 153 ~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~~~i~~~~~~~~--------~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
++++|.+.|+ +.++. +++|++.|++|| .|.++.+.++ +|++||+|.+.++|.+|+..|||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 4578999998 33443 478999999999 9999999854 69999999999999999999999
Q ss_pred CCcccccCeEeEEEecC
Q 020857 215 TQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 215 ~~~~~~~g~~l~v~~a~ 231 (320)
+ .++||.|+|.|..
T Consensus 82 ~---~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 R---KFANRVVVTKYCD 95 (105)
T ss_dssp C---EETTEECEEEEEC
T ss_pred C---EeCCCEEEEEEeC
Confidence 9 9999999999864
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-12 Score=91.94 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=56.6
Q ss_pred ccCcHHHHHHHHhccCCccEEEEEee-CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCCCC
Q 020857 164 PEVTQLDLHRHFHSLGAGVIEEVRVQ-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSKPT 234 (320)
Q Consensus 164 ~~~t~~~l~~~F~~~G~~~i~~~~~~-~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~~~ 234 (320)
.++++++|+++|++|| .|.++.+. +.+|||||+|.+.++|..|++.++ .+.|++|+|.|++.+.
T Consensus 27 ~~~te~~L~~~F~~~G--~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~-----~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYG--EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV-----GLVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTS--CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC-----BCSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcC--CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCeEEEEEccCCC
Confidence 4689999999999999 99999997 558999999999999999999744 4679999999987654
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.34 E-value=3.4e-12 Score=96.02 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=64.1
Q ss_pred ceEEEECCCCc--cC---cHHHHHHHHhccCCccEEEEEeeCC----------CcEEEEEeCCHHHHHHHHHHcCCCCcc
Q 020857 154 YTTVYVGNLAP--EV---TQLDLHRHFHSLGAGVIEEVRVQRD----------KGFGFVRYSTHAEAALAIQMGNTTQSS 218 (320)
Q Consensus 154 ~~~l~V~nl~~--~~---t~~~l~~~F~~~G~~~i~~~~~~~~----------~g~afV~f~~~~~A~~A~~~l~~~~~~ 218 (320)
+++|++.|+-. ++ .+++|++.|++|| .|.++.+.++ +|++||+|.+.++|.+|+..|||+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G--~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr--- 94 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR--- 94 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTS--CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC---
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccC--CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC---
Confidence 47899999842 22 3689999999999 9999998754 389999999999999999999999
Q ss_pred cccCeEeEEEecC
Q 020857 219 YLFGKQMKCSWGS 231 (320)
Q Consensus 219 ~~~g~~l~v~~a~ 231 (320)
+++||.|+|.|..
T Consensus 95 ~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 95 WFAGRKVVAEVYD 107 (118)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCcEEEEEEcC
Confidence 9999999999864
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=8.9e-13 Score=97.14 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=59.6
Q ss_pred ECCCCccCcHHHHHHHH------------hccCCccEEEEEeeCC-----CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 159 VGNLAPEVTQLDLHRHF------------HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 159 V~nl~~~~t~~~l~~~F------------~~~G~~~i~~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
+.+|+..+++++|++.| ++|| .|.++.+.++ +|+|||+|.+.++|.+|+..|||. .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~---~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR---WFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC---EET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC---EEC
Confidence 56777888887777666 9999 9999999865 799999999999999999999999 999
Q ss_pred CeEeEEEec
Q 020857 222 GKQMKCSWG 230 (320)
Q Consensus 222 g~~l~v~~a 230 (320)
|+.|+|.|+
T Consensus 95 Gr~i~v~~s 103 (104)
T 1jmt_A 95 GQPIHAELS 103 (104)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEEc
Confidence 999999986
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=7.3e-12 Score=93.53 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=63.7
Q ss_pred ceEEEECCCCccC----------cHHHHHHHHhccCCccEEEEEeeCC--CcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 154 YTTVYVGNLAPEV----------TQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 154 ~~~l~V~nl~~~~----------t~~~l~~~F~~~G~~~i~~~~~~~~--~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
+++|.+.|+-..- .+++|++.|++|| .|.++.+.++ +|++||+|.+.++|.+|++.|||+ +++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~---~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR---WFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC---EET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC---EEC
Confidence 4678888883321 2468999999999 8999999876 799999999999999999999999 999
Q ss_pred CeEeEEEecC
Q 020857 222 GKQMKCSWGS 231 (320)
Q Consensus 222 g~~l~v~~a~ 231 (320)
|+.|+|.|+.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999974
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.1e-11 Score=89.09 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=66.9
Q ss_pred CCceeEEEcCCCcc-CcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecC-HHHHHHHHHHh--CCCeeCCeeEE
Q 020857 31 SGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN-QQDAQSAINDL--TGKWLGSRQIR 106 (320)
Q Consensus 31 ~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~-~~~A~~A~~~l--~~~~~~g~~l~ 106 (320)
...+.|||+||+.+ +++++|+++|+.||+|..|.+.++.. .|||+|.+ .++|..|++.+ ++..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35789999999999 99999999999999999999988764 59999999 89999999999 47788998888
Q ss_pred EEecc
Q 020857 107 CNWAT 111 (320)
Q Consensus 107 v~~a~ 111 (320)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=5.1e-11 Score=83.47 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=61.8
Q ss_pred CceeEEEcCCC----ccCcH----HHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 32 GHFNIFVGDLS----PEVTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 32 ~~~~l~V~nLp----~~~te----~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
+.-||+|.-.+ .++-. .+|.+.|..||+|..++++.|+ +||+|.+.++|.+|++ |||..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 45578887766 23433 5789999999999999999874 8999999999999996 999999999
Q ss_pred eEEEEeccCC
Q 020857 104 QIRCNWATKG 113 (320)
Q Consensus 104 ~l~v~~a~~~ 113 (320)
.|+|.++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999988753
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-10 Score=81.67 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=61.8
Q ss_pred cceEEEECCCCc----cCcH----HHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeE
Q 020857 153 QYTTVYVGNLAP----EVTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 224 (320)
Q Consensus 153 ~~~~l~V~nl~~----~~t~----~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~ 224 (320)
+-.||+|...+. +.-+ .+|.+.|++|| .|..+++..++ +||+|.+.++|.+|++ |||. .++||.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~---~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK---ELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC---EETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--EEEEECChHHHHHHHh-cCCe---EeCCeE
Confidence 336788876652 2322 67999999999 99999999986 8999999999999998 9999 999999
Q ss_pred eEEEecCCC
Q 020857 225 MKCSWGSKP 233 (320)
Q Consensus 225 l~v~~a~~~ 233 (320)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=2.4e-10 Score=85.45 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCCcceEEEECCCCcc-CcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCC-HHHHHHHHHHcC--CCCcccccCeEe
Q 020857 150 NNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST-HAEAALAIQMGN--TTQSSYLFGKQM 225 (320)
Q Consensus 150 ~~~~~~~l~V~nl~~~-~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--~~~~~~~~g~~l 225 (320)
..+.++.|||+||+.+ +++++|+++|+.|| .|.+|.+.++.-.|||+|.+ +++|..|+..+| +. .|.|..+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~---~i~g~~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL---QLRNKEV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCB---CTTSSSE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCc---EEeCcEE
Confidence 3455689999999999 99999999999999 99999999999999999999 899999999995 55 7889888
Q ss_pred EEEe
Q 020857 226 KCSW 229 (320)
Q Consensus 226 ~v~~ 229 (320)
++..
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.07 E-value=2.8e-10 Score=95.64 Aligned_cols=80 Identities=11% Similarity=0.231 Sum_probs=66.5
Q ss_pred ceeEEEcCCC-----ccCcHHHHHHHhccCCCeeEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhCCCeeCCe
Q 020857 33 HFNIFVGDLS-----PEVTDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 103 (320)
Q Consensus 33 ~~~l~V~nLp-----~~~te~~l~~~F~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~ 103 (320)
.+.+.+.|+- .+-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|||..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3445555543 2346779999999999999999996543 448999999999999999999999999999999
Q ss_pred eEEEEeccC
Q 020857 104 QIRCNWATK 112 (320)
Q Consensus 104 ~l~v~~a~~ 112 (320)
.|.+.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.6e-10 Score=80.22 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCceeEEEcCCCcc-----CcH----HHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeC
Q 020857 31 SGHFNIFVGDLSPE-----VTD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 101 (320)
Q Consensus 31 ~~~~~l~V~nLp~~-----~te----~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~ 101 (320)
.+.-||+|.-++.+ +-. .+|.+.|..||+|..+++..|+ +||+|.+.++|.+|++ |+|..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35668999888743 323 4688999999999999999884 9999999999999996 9999999
Q ss_pred CeeEEEEecc
Q 020857 102 SRQIRCNWAT 111 (320)
Q Consensus 102 g~~l~v~~a~ 111 (320)
||.|+|.+..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=6.3e-10 Score=78.30 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=61.5
Q ss_pred CCcceEEEECCCCcc-----CcH----HHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCccccc
Q 020857 151 NPQYTTVYVGNLAPE-----VTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 221 (320)
Q Consensus 151 ~~~~~~l~V~nl~~~-----~t~----~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 221 (320)
.|+-.||+|..++.+ +-+ .+|.+.|++|| +|..+++..++ +||+|.+.++|.+|++ |||. .++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~---~v~ 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM---KVK 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS---EET
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe---eeC
Confidence 344468999877632 222 56999999999 89999999986 9999999999999998 9999 999
Q ss_pred CeEeEEEecC
Q 020857 222 GKQMKCSWGS 231 (320)
Q Consensus 222 g~~l~v~~a~ 231 (320)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999854
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=2.9e-08 Score=83.20 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=55.2
Q ss_pred cHHHHHHHHhccCCccEEEEEee----------CCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 167 TQLDLHRHFHSLGAGVIEEVRVQ----------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 167 t~~~l~~~F~~~G~~~i~~~~~~----------~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
.+++|++.|++|| .|.++.+. +.+|++||+|.+.++|.+|++.|||+ +++||.|++.|..
T Consensus 142 ~~~dl~~e~~~~G--~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr---~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR---WFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTS--CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEEECC
T ss_pred HHHHHHHHHHccC--CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc---eECCeEEEEEEcC
Confidence 5678999999999 99999987 44789999999999999999999999 9999999999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=1e-07 Score=68.38 Aligned_cols=69 Identities=14% Similarity=0.132 Sum_probs=66.3
Q ss_pred eEEEECCCCccCcHHHHHHHHhcc-----CCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEE
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCS 228 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~-----G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~ 228 (320)
++|-+-|||..+++..|+.+.+++ | .++.+.+..+.+-|+|+|.+...|.+|.-.|+|. +|.|+.|+|.
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~---ef~gr~Lr~g 95 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGS---QFQGKVIRSG 95 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSE---EETTEEEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCCCceEEEEccchhhHHHHhhcCCe---eecCeEEEec
Confidence 678888999999999999999999 9 9999999999999999999999999999999999 9999999996
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.2e-07 Score=66.67 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=67.7
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccC-----CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVY-----PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
.+..++|=+-|||-.+++..|+.+++++ |.|..+.+..|. +=|+|+|.+..+|-+|.-.|+|..|.||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457899999999999999999999999 999999999885 35999999999999999999999999999
Q ss_pred EEEEe
Q 020857 105 IRCNW 109 (320)
Q Consensus 105 l~v~~ 109 (320)
|+|.-
T Consensus 92 Lr~gT 96 (117)
T 2l9w_A 92 IRSGT 96 (117)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99974
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.42 E-value=1.9e-06 Score=61.67 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=65.7
Q ss_pred eEEEECCCCccC-c----HHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEe
Q 020857 155 TTVYVGNLAPEV-T----QLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSW 229 (320)
Q Consensus 155 ~~l~V~nl~~~~-t----~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~ 229 (320)
++|+|.||+.++ + .+.++++|..|+ .+......++=.-..|.|.+.++|.+|...||+. .+.|+.++|-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~---~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKT---EFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTS---EETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecCcceEEEEEeCChHHHHHHHHHhccc---eecCceeEEEe
Confidence 689999999887 2 257899999999 8888888988778899999999999999999999 99999999999
Q ss_pred cCC
Q 020857 230 GSK 232 (320)
Q Consensus 230 a~~ 232 (320)
+.+
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 973
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=3.8e-05 Score=54.67 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=60.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhc---cCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHS---LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGS 231 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~---~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~ 231 (320)
++|.|.|||++++++.|+-+|+. -|.+.|.++.... +-|+|+|.+.+.|++.++. ... .+.+..|.|.-..
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H---~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADH---ELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCC---BSSSSBCEEEECC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-Ccc---eecCeEEEEEcCC
Confidence 78999999999999999999998 4657999999887 7999999999999999874 233 7889999986433
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1e-05 Score=57.64 Aligned_cols=73 Identities=23% Similarity=0.231 Sum_probs=59.9
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhcc-C----CCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCee
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSV-Y----PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 104 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~ 104 (320)
.+...+|.|.|||.++.++.|.-+|+. - |+|++++... +-|+|+|.+.+.|++.++ -....+.+.+
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeE
Confidence 345679999999999999999999976 2 7898887754 368999999999999994 3466788999
Q ss_pred EEEEecc
Q 020857 105 IRCNWAT 111 (320)
Q Consensus 105 l~v~~a~ 111 (320)
|.|....
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 9997643
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.8e-05 Score=56.53 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=63.7
Q ss_pred CceeEEEcCCCccC-cH----HHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 020857 32 GHFNIFVGDLSPEV-TD----ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 106 (320)
Q Consensus 32 ~~~~l~V~nLp~~~-te----~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~ 106 (320)
..++|+|.||+.++ .. +.++++|..|+++.....++.= +-..|.|.++++|.+|...||+..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35689999999876 22 4678999999999888777542 2578999999999999999999999999999
Q ss_pred EEeccC
Q 020857 107 CNWATK 112 (320)
Q Consensus 107 v~~a~~ 112 (320)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.96 E-value=7e-05 Score=52.63 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=55.9
Q ss_pred eeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhCCCee
Q 020857 34 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 34 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
++|-||+||+++||+++.+.+..+..+.....+.-+.+. ..-.-|||.|.+.+++....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 479999999999999999999999888777666544332 2334689999999999999999999977
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.74 E-value=0.00016 Score=50.79 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=46.0
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 95 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l 95 (320)
.+-++| ++|.++.-.||.++|+.||-| .|+.+-|- .|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345555 999999999999999999966 47777773 7999999999999999765
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.41 E-value=0.0015 Score=45.85 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=45.7
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 213 (320)
+.++| +.|+++...||.++|+.||.+.|.-+. --.|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999855666554 3579999999999999999774
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.0013 Score=48.26 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=59.2
Q ss_pred CCCceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCC-eeEEEE
Q 020857 30 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-RQIRCN 108 (320)
Q Consensus 30 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g-~~l~v~ 108 (320)
....+.|.|-+.|++. .+.|...|+.||+|.+..... ....-.|.|.+..+|++|+ ..||..+.| ..|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 3457899999999996 567778999999999877621 2248899999999999999 669999975 667777
Q ss_pred ecc
Q 020857 109 WAT 111 (320)
Q Consensus 109 ~a~ 111 (320)
+..
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.32 E-value=0.00058 Score=48.22 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhCCCee
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWL 100 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~A~~~l~~~~~ 100 (320)
-+.+|.||.||+.+||+++.+.+..+-++.....+.-+.+. ..-..|||.|.+.++.....+..+|..+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 35689999999999999999998876554333322211111 1224689999999999999999999877
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0017 Score=47.66 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=58.2
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccC-eEeEEEec
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKCSWG 230 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g-~~l~v~~a 230 (320)
.+.|.|.+.|.+. ...|...|++|| .|.+........+-.|.|.+..+|++|+.. ||. .++| ..|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~---ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKALSK-DGR---IFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTC---EETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhC--cEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCe---EecCCEEEEEEEC
Confidence 4788898999885 567888999999 999998876788999999999999999976 998 7875 55556654
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.24 E-value=0.00052 Score=48.36 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=45.6
Q ss_pred eEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 020857 35 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 96 (320)
Q Consensus 35 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~ 96 (320)
.||+-++|.++.-.||..+|+.||.| .|+.+-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34444999999999999999999944 57777773 79999999999999998764
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.23 E-value=0.0024 Score=44.79 Aligned_cols=71 Identities=10% Similarity=0.195 Sum_probs=57.1
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC----
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG---- 222 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g---- 222 (320)
++|.|++||+.+|++++.+.++... .+.......+ -..|+|.|.+.++...-.+.++|. .+-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~---~F~D~kg~ 76 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY---VFLDNKGQ 76 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC---EEECTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc---EEEcCCCC
Confidence 5799999999999999999999998 6666666544 257999999999999999999998 5543
Q ss_pred -eEeEEEec
Q 020857 223 -KQMKCSWG 230 (320)
Q Consensus 223 -~~l~v~~a 230 (320)
.+..|.||
T Consensus 77 ~~~a~VE~A 85 (91)
T 1uw4_A 77 EYPAIVEFA 85 (91)
T ss_dssp EEECEEEEC
T ss_pred EeeeEEEEc
Confidence 23346665
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.74 E-value=0.0021 Score=45.26 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=43.7
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 213 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 213 (320)
+.++| +.|.++...||.++|+.||.+.|.-+. --.|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 55666 999999999999999999833333332 3589999999999999999775
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.24 E-value=0.0075 Score=44.92 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=55.2
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeE-EEEeecC--------CCC-----CccceEEEEecCHHHHHHHHHHhCC
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQ--------KTG-----RSRGFGFVSFRNQQDAQSAINDLTG 97 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~i~~~~--------~~g-----~~~G~afV~f~~~~~A~~A~~~l~~ 97 (320)
....|.|=+.|++.+. .+.+.|++||.|.+ +.+.++. ... .....-.|.|.+..+|.+|+ ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3457888899777655 45688999999965 2221100 000 13457789999999999999 5699
Q ss_pred CeeCCeeEEEEeccC
Q 020857 98 KWLGSRQIRCNWATK 112 (320)
Q Consensus 98 ~~~~g~~l~v~~a~~ 112 (320)
..+.|.-|-|.+.++
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888887654
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.24 E-value=0.0017 Score=59.44 Aligned_cols=57 Identities=11% Similarity=0.210 Sum_probs=43.3
Q ss_pred CceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHH
Q 020857 32 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 94 (320)
Q Consensus 32 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~ 94 (320)
..|+|+|. .|..+++.+|.++|+.||+|.++.+..++ | -||.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 46899997 89999999999999999999998886553 3 5999999999999977743
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.99 E-value=0.0035 Score=57.48 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=42.2
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCc-EEEEEeCCHHHHHHHHH
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQ 210 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g-~afV~f~~~~~A~~A~~ 210 (320)
++|+|. .+..+++.+|.++|++|| .|.++...+++| |++|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 789996 799999999999999999 999999998876 89999999999887654
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.80 E-value=0.013 Score=41.22 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=52.9
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCC--------CcEEEEEeCCHHHHHHHHHHcCCCCcccccC----
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG---- 222 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~--------~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g---- 222 (320)
-+|.|+.||+.+||+++.+.++..- .+.......+ -..|+|.|.+.++...-.+.++|. .+-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~---~F~D~kg~ 84 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLP--AHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGY---IFLDSKGL 84 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCS--SEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTE---EEECTTCC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcC--ccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCc---EEEeCCCC
Confidence 4699999999999999998888764 4433333322 257999999999999999999988 5533
Q ss_pred -eEeEEEec
Q 020857 223 -KQMKCSWG 230 (320)
Q Consensus 223 -~~l~v~~a 230 (320)
-+..|+||
T Consensus 85 ~~~a~VE~A 93 (97)
T 2l08_A 85 EYPAVVEFA 93 (97)
T ss_dssp EEEEEEEEC
T ss_pred EeeeEEEec
Confidence 23446655
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.52 E-value=0.017 Score=42.97 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=51.5
Q ss_pred eEEEECCCCccCcHHHHHHHHhccCCccEEE-EEeeC-------------------CCcEEEEEeCCHHHHHHHHHHcCC
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQR-------------------DKGFGFVRYSTHAEAALAIQMGNT 214 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~-~~~~~-------------------~~g~afV~f~~~~~A~~A~~~l~~ 214 (320)
..|.|-+.|++.+ ..+.+.|++|| .|.+ +...+ ...+..|+|.+..+|.+|+.. ||
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G--~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFG--TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGS--CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhc--eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 4577778877655 45667899999 6655 22111 356789999999999999975 99
Q ss_pred CCcccccCeEeEEEec
Q 020857 215 TQSSYLFGKQMKCSWG 230 (320)
Q Consensus 215 ~~~~~~~g~~l~v~~a 230 (320)
. .++|.-|-|...
T Consensus 84 ~---ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 A---VFNGVLLGVIPY 96 (132)
T ss_dssp C---EETTEECEEEEC
T ss_pred e---EeCcEEEEEEEC
Confidence 9 899987777754
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.47 E-value=0.35 Score=45.05 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=45.6
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhC
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 96 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~ 96 (320)
+..++|+ +|..+...+|.++|+.||.+ +|+.+-|. .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4466665 99999999999999999965 46666552 79999999999999998874
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.72 E-value=2.5 Score=39.31 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=45.0
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCC
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
...++|+ .+..+...+|.++|+.|| .+ +|+... ...|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg--~v-~V~wid-dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFG--NI-QISWID-DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGC--CC-EEEECS-SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcC--CE-EEEEEc-CCeEEEEECCHHHHHHHHHHHHhC
Confidence 4567776 888899999999999999 33 333333 468999999999999999988543
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.97 E-value=23 Score=27.51 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=35.5
Q ss_pred eEEEcCCCc-c--------CcHHHHHHHh--ccCCCeeEEEEeecCCCCCccceEEEEecCH
Q 020857 35 NIFVGDLSP-E--------VTDATLFACF--SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ 85 (320)
Q Consensus 35 ~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 85 (320)
.+.|-|+|. . .+..+|++.| +.|.++. ++.+..+ .-++|++.|+|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 567788886 2 4457899977 9998876 6666654 34889999999654
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=44.46 E-value=21 Score=23.16 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=37.2
Q ss_pred cCcHHHHHHHhccCCC-----eeEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEecc
Q 020857 44 EVTDATLFACFSVYPS-----CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 111 (320)
Q Consensus 44 ~~te~~l~~~F~~~G~-----i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~a~ 111 (320)
.++..+|..++..-+. |-.|.|..+ |.||+-.... +..+++.|++..+.|+.+.++.+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 4666677777754433 445666432 7899887654 677888999999999999987653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.89 E-value=89 Score=21.14 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=43.8
Q ss_pred ceEEEECCCCccCcHHHHHHHHhccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHc
Q 020857 154 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 212 (320)
Q Consensus 154 ~~~l~V~nl~~~~t~~~l~~~F~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l 212 (320)
++-+-|-|+|..+-..++--.....| ---.|.... |.+.+.|.+.++-..|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlg--yefycdyid--gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYID--GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEECS--SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcC--eeEeeeeec--CeeEEEecCChHHHHHHHHH
Confidence 36788999999998888777777777 444555543 68999999999999999876
No 406
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.16 E-value=1e+02 Score=21.39 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred CCCccCcHHHHHHHH-hccCCccEEEEEeeCCCcEEEEEeCCHHHHHHHHHHcCCCCcccccCeEeEEEecCC
Q 020857 161 NLAPEVTQLDLHRHF-HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKCSWGSK 232 (320)
Q Consensus 161 nl~~~~t~~~l~~~F-~~~G~~~i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~g~~l~v~~a~~ 232 (320)
.++..+.-+||.... +.|| .-.++.... ....|-..+.+|-.+|++.++.. ..-+.|+|-...+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n--~EllIpl~sQeDLDkaIellDrs----s~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFG--QSMDLHYTN--NELVIPLTTQDDLDKAVELLDRS----IHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHS--SCEEEEECS--SSSCEECCSHHHHHHHHHHHHHC----SSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhC--CeeeEEEec--ceEEEeccCHHHHHHHHHHHccC----CcccceEEEEecC
Confidence 467788888776544 4677 666776663 36788899999999999998765 3334555544433
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.60 E-value=63 Score=24.99 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=34.5
Q ss_pred EEEECCCCc-c--------CcHHHHHHHH--hccCCccEEEEEeeCC-CcEEEEEeCC-HHHHHHHHH
Q 020857 156 TVYVGNLAP-E--------VTQLDLHRHF--HSLGAGVIEEVRVQRD-KGFGFVRYST-HAEAALAIQ 210 (320)
Q Consensus 156 ~l~V~nl~~-~--------~t~~~l~~~F--~~~G~~~i~~~~~~~~-~g~afV~f~~-~~~A~~A~~ 210 (320)
+..|-|++. . .+..+|++.| ..|.+..|..+.-..+ .|+++|.|.+ ..--..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 355667776 2 2347899977 8898555554444443 6789999976 444444443
No 408
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=33.06 E-value=22 Score=24.96 Aligned_cols=49 Identities=4% Similarity=0.072 Sum_probs=29.9
Q ss_pred ccCcHHHHHHHhcc-CCC---eeEEEEee-cCCCCCccceEEEEecCHHHHHHHH
Q 020857 43 PEVTDATLFACFSV-YPS---CSDARVMW-DQKTGRSRGFGFVSFRNQQDAQSAI 92 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~---i~~v~i~~-~~~~g~~~G~afV~f~~~~~A~~A~ 92 (320)
...+..+|++.+++ |+. +.-|.=++ .--.|.++|||.| |.|.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56677888877743 443 22222222 2224678888877 88888877654
No 409
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=38.63 E-value=9.5 Score=27.11 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=39.2
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEEeecCCCCCccceE--EEEecCHHHHHHHHHHhCCC
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG--FVSFRNQQDAQSAINDLTGK 98 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~a--fV~f~~~~~A~~A~~~l~~~ 98 (320)
..+|-+... -+++++..+..+.+ +..+.+.+...+|+. .|. +=.|.+.++|.+|++.|-..
T Consensus 25 ~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 25 HYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 445555443 45667777777776 455777665444433 233 34899999999999887544
No 410
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=32.21 E-value=25 Score=24.93 Aligned_cols=48 Identities=6% Similarity=0.107 Sum_probs=29.0
Q ss_pred ccCcHHHHHHHhcc-CCCeeE---EEEeec-CCCCCccceEEEEecCHHHHHHH
Q 020857 43 PEVTDATLFACFSV-YPSCSD---ARVMWD-QKTGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~i~~---v~i~~~-~~~g~~~G~afV~f~~~~~A~~A 91 (320)
...+..||++.++. |+.-.+ |.=++. --.|.++|||.| |.|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888877743 443222 222222 123678899887 8888887754
No 411
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=30.04 E-value=36 Score=25.23 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=30.7
Q ss_pred ccCcHHHHHHHhc-cCCCeeEEEEe---e-cCCCCCccceEEEEecCHHHHHHH
Q 020857 43 PEVTDATLFACFS-VYPSCSDARVM---W-DQKTGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~-~~G~i~~v~i~---~-~~~~g~~~G~afV~f~~~~~A~~A 91 (320)
...+..||++-+. .|+.-.++.++ + .--.|.+.|||.| |.+.+.|...
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4678899999884 46543222222 2 2224678888887 8888887654
No 412
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=28.89 E-value=1.4e+02 Score=20.22 Aligned_cols=46 Identities=11% Similarity=-0.005 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCccEEEEEeeCC-CcEEEEEeCCHHHHHHHHHHcCCC
Q 020857 169 LDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 215 (320)
Q Consensus 169 ~~l~~~F~~~G~~~i~~~~~~~~-~g~afV~f~~~~~A~~A~~~l~~~ 215 (320)
+.|++.....| ..+.++.++.. .||.||++...++...+++...+.
T Consensus 27 ~~L~~~~~~~~-l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 27 GLMASRAEKEQ-LDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHHTT-CCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHHhcC-CcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 33444444445 35667776654 899999999998888887765554
No 413
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=28.44 E-value=23 Score=24.68 Aligned_cols=48 Identities=6% Similarity=0.051 Sum_probs=27.8
Q ss_pred ccCcHHHHHHHhcc-CCCeeEEEEeecCCC----CCccceEEEEecCHHHHHHH
Q 020857 43 PEVTDATLFACFSV-YPSCSDARVMWDQKT----GRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~i~~v~i~~~~~~----g~~~G~afV~f~~~~~A~~A 91 (320)
...+..+|++.+.. |+.-.++.++..-.| |.++|||.| |.|.+.|.+.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677788876643 433233333332223 678888877 7777776554
No 414
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=26.46 E-value=1.6e+02 Score=27.20 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=33.1
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccC---CCeeEEEEeecCCCCCccceEE-EEecCHHHHHHHHHHhCC
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVY---PSCSDARVMWDQKTGRSRGFGF-VSFRNQQDAQSAINDLTG 97 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~i~~~~~~g~~~G~af-V~f~~~~~A~~A~~~l~~ 97 (320)
..+|.|.-||+.++.+.|.+..... +.|..|.=++|. +. ..|.-| |+++...+++..+..|-.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDe-sd-~~gvrivIelk~~~~~e~vl~~L~k 341 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDE-TD-RTGLRIAIELKKDVNSESIKNYLYK 341 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEEC-CB-TTBCCEEEEC------CHHHHHHTT
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhc-CC-CCceEEEEEECCCcCHHHHHHHHHH
Confidence 4689999999999988877655432 344334334453 22 223444 567766666666655543
No 415
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=26.28 E-value=45 Score=25.10 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=29.9
Q ss_pred ccCcHHHHHHHhcc-CCCeeEEEEeecCC----CCCccceEEEEecCHHHHHHH
Q 020857 43 PEVTDATLFACFSV-YPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~A 91 (320)
...+..||++.++. |+.=.++.++..-. .|.+.|||.| |.+.+.|...
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 46778888887754 54422222222212 3678889888 8888887754
No 416
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=24.07 E-value=1.4e+02 Score=19.47 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.5
Q ss_pred eEEEECCCCccCcHHHHHHHHhcc
Q 020857 155 TTVYVGNLAPEVTQLDLHRHFHSL 178 (320)
Q Consensus 155 ~~l~V~nl~~~~t~~~l~~~F~~~ 178 (320)
-++|| |.++++++.+....++|
T Consensus 47 E~m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 47 EVNIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEEEE--ECTTCCHHHHHHHHHHH
T ss_pred EEEEE--ECCCCCHHHHHHHHHHH
Confidence 46887 78889998888877766
No 417
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.07 E-value=1.4e+02 Score=20.75 Aligned_cols=48 Identities=2% Similarity=-0.020 Sum_probs=29.0
Q ss_pred ccCcHHHHHHHhcc-CCC---eeEEEEee-cCCCCCccceEEEEecCHHHHHHH
Q 020857 43 PEVTDATLFACFSV-YPS---CSDARVMW-DQKTGRSRGFGFVSFRNQQDAQSA 91 (320)
Q Consensus 43 ~~~te~~l~~~F~~-~G~---i~~v~i~~-~~~~g~~~G~afV~f~~~~~A~~A 91 (320)
...+..+|++.+++ |+. +.-|.=++ .--.|.++|||.| |.|.+.|.+.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56777888877743 332 22222222 2224678889887 8888887653
No 418
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.70 E-value=15 Score=27.83 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHHhccCCCeeEEEEeecCCCCCccceEEEEec
Q 020857 48 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 83 (320)
Q Consensus 48 ~~l~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 83 (320)
+|+.++|...|.|. .+.+ .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 45556676666654 3322 4689999876
No 419
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.65 E-value=1.1e+02 Score=25.33 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=25.0
Q ss_pred ceeEEEcCCCccCcHHHHHHHhccCCCeeEEEE
Q 020857 33 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 65 (320)
Q Consensus 33 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i 65 (320)
...+.|+|||++++...|..++.. ..+....+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 346789999999999999999977 55554433
No 420
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.02 E-value=1.1e+02 Score=23.28 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=27.8
Q ss_pred CcHHHHHHHhccCCCee---EEEEeecCCCCCccceEEE
Q 020857 45 VTDATLFACFSVYPSCS---DARVMWDQKTGRSRGFGFV 80 (320)
Q Consensus 45 ~te~~l~~~F~~~G~i~---~v~i~~~~~~g~~~G~afV 80 (320)
.|+++|+++=...|++. .+.+..|..+|+.+.|||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 58999999999999883 4555556348999988874
Done!