Query 020858
Match_columns 320
No_of_seqs 149 out of 1590
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:13:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfk_A Zinc finger, FYVE domai 67.5 3 0.0001 30.6 2.4 24 166-189 10-35 (88)
2 2ayj_A 50S ribosomal protein L 66.6 2.8 9.6E-05 28.0 1.8 25 166-190 20-44 (56)
3 3j21_g 50S ribosomal protein L 63.3 4 0.00014 26.8 2.1 26 166-191 15-40 (51)
4 1z2q_A LM5-1; membrane protein 61.5 6.4 0.00022 28.4 3.2 24 166-189 22-47 (84)
5 1vfy_A Phosphatidylinositol-3- 56.0 5.6 0.00019 27.9 2.0 24 166-189 12-37 (73)
6 1x4u_A Zinc finger, FYVE domai 55.6 6.1 0.00021 28.5 2.2 24 166-189 15-40 (84)
7 2yw8_A RUN and FYVE domain-con 52.2 7 0.00024 28.0 2.0 24 166-189 20-45 (82)
8 1joc_A EEA1, early endosomal a 50.6 7.6 0.00026 30.3 2.1 24 166-189 70-95 (125)
9 3t7l_A Zinc finger FYVE domain 49.2 13 0.00043 27.2 3.1 24 166-189 21-46 (90)
10 1dvp_A HRS, hepatocyte growth 49.2 6.4 0.00022 33.7 1.6 24 166-189 162-187 (220)
11 3zyq_A Hepatocyte growth facto 43.4 8.4 0.00029 33.2 1.5 24 166-189 165-190 (226)
12 1y02_A CARP2, FYVE-ring finger 42.5 6.9 0.00023 30.4 0.7 24 166-189 20-45 (120)
13 2cr8_A MDM4 protein; ZF-ranbp 33.0 20 0.00068 23.3 1.6 22 166-187 12-33 (53)
14 2knc_B Integrin beta-3; transm 31.4 81 0.0028 22.3 4.9 40 217-256 11-50 (79)
15 2c6a_A Ubiquitin-protein ligas 30.0 23 0.00078 22.6 1.5 22 166-187 14-35 (46)
16 2dkt_A Ring finger and CHY zin 28.6 24 0.00082 28.2 1.8 46 159-204 77-126 (143)
17 1twf_L ABC10-alpha, DNA-direct 25.5 40 0.0014 23.4 2.2 25 166-190 29-56 (70)
18 3u5e_m 60S ribosomal protein L 23.0 37 0.0013 26.1 1.9 23 166-188 94-118 (128)
19 3mpx_A FYVE, rhogef and PH dom 21.1 20 0.0007 33.4 0.0 24 166-189 376-401 (434)
No 1
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=67.51 E-value=3 Score=30.57 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=18.8
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCcCcCCcccCccccccCCCCCCEE
Confidence 578888874 456889999999844
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=66.59 E-value=2.8 Score=28.00 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=22.0
Q ss_pred eecccCCcccCCCCccCcCCCcccC
Q 020858 166 LTCSYCNVEQPPRAKHCHDCDRCVL 190 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~rCV~ 190 (320)
+.|.+|...-|+|+.-|+.||.--+
T Consensus 20 ~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 20 KVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp EEETTTCCEECTTCSSCTTTCCCCE
T ss_pred hhhccccCcCCcccccccCCCCCCC
Confidence 7899999999999999998885433
No 3
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.34 E-value=4 Score=26.78 Aligned_cols=26 Identities=31% Similarity=0.655 Sum_probs=22.8
Q ss_pred eecccCCcccCCCCccCcCCCcccCC
Q 020858 166 LTCSYCNVEQPPRAKHCHDCDRCVLQ 191 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~rCV~r 191 (320)
..|..|...-|.++..|+.||.--++
T Consensus 15 ~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 15 YVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp EECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred ccCCCCCCcCCCCceecCCCCCcccc
Confidence 78999999999999999999876443
No 4
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.51 E-value=6.4 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.717 Sum_probs=18.6
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 22 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCcCcCCccccchhcccccCCCcEE
Confidence 568888874 346889999999854
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.01 E-value=5.6 Score=27.86 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=18.1
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
.-|..|+.. .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888774 446889999999844
No 6
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.60 E-value=6.1 Score=28.48 Aligned_cols=24 Identities=17% Similarity=0.602 Sum_probs=18.6
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CcCcCcCCccccchhhhhhcCCCcEE
Confidence 568888774 457899999999844
No 7
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=52.20 E-value=7 Score=28.01 Aligned_cols=24 Identities=29% Similarity=0.782 Sum_probs=18.5
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCcCCcccCccccccCCCCCCEE
Confidence 568888774 456899999999854
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.61 E-value=7.6 Score=30.31 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=18.7
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 568888874 356899999999744
No 9
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.24 E-value=13 Score=27.17 Aligned_cols=24 Identities=29% Similarity=0.798 Sum_probs=17.9
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 568888763 345889999998754
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.24 E-value=6.4 Score=33.69 Aligned_cols=24 Identities=33% Similarity=0.848 Sum_probs=18.8
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 579999764 346899999999854
No 11
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=43.37 E-value=8.4 Score=33.20 Aligned_cols=24 Identities=29% Similarity=0.757 Sum_probs=18.1
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. --.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 468889763 345789999999854
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.47 E-value=6.9 Score=30.44 Aligned_cols=24 Identities=25% Similarity=0.767 Sum_probs=18.2
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
..|..|+.. -..|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 468888773 356889999999843
No 13
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=32.97 E-value=20 Score=23.33 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=18.2
Q ss_pred eecccCCcccCCCCccCcCCCc
Q 020858 166 LTCSYCNVEQPPRAKHCHDCDR 187 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~r 187 (320)
..|.+|+..-||--.||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 6799999998998888887654
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.37 E-value=81 Score=22.31 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHhc
Q 020858 217 IMIVLLIILAISLIFLLLLLLFHSYLILTNQTTYELVRRR 256 (320)
Q Consensus 217 ~~i~~~~~~~~~~~~~~~L~~~h~~lI~~n~TT~E~~~~~ 256 (320)
..+++.++..++++.++.|+++.+....+..--.+.+++.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666677777777666666655555544
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=29.96 E-value=23 Score=22.55 Aligned_cols=22 Identities=36% Similarity=0.910 Sum_probs=18.3
Q ss_pred eecccCCcccCCCCccCcCCCc
Q 020858 166 LTCSYCNVEQPPRAKHCHDCDR 187 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~~C~r 187 (320)
..|.+|+.+-||--.||..|-.
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 6799999999998888877643
No 16
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.59 E-value=24 Score=28.21 Aligned_cols=46 Identities=26% Similarity=0.563 Sum_probs=31.1
Q ss_pred CCCcccceecccCCcccCC-CCccCcCCCcccCC--C-cccCcCCCcccc
Q 020858 159 PGTSIRSLTCSYCNVEQPP-RAKHCHDCDRCVLQ--F-DHHCVWLGTCVG 204 (320)
Q Consensus 159 ~~~~~~~~~C~~C~~~kP~-Rs~HC~~C~rCV~r--~-DHHCpWv~nCIG 204 (320)
.+......||.+|+.+.+. ...||..||.|-.. - =-||.--|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3444555799999988443 46788888888765 1 256776676754
No 17
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.51 E-value=40 Score=23.43 Aligned_cols=25 Identities=28% Similarity=0.749 Sum_probs=19.6
Q ss_pred eecccCCcc---cCCCCccCcCCCcccC
Q 020858 166 LTCSYCNVE---QPPRAKHCHDCDRCVL 190 (320)
Q Consensus 166 ~~C~~C~~~---kP~Rs~HC~~C~rCV~ 190 (320)
..|..|... ++..+-||+.||.-|+
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCceEe
Confidence 579999876 5566789999998664
No 18
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=22.97 E-value=37 Score=26.06 Aligned_cols=23 Identities=35% Similarity=0.927 Sum_probs=20.6
Q ss_pred eecccCCcccCCCCccCc--CCCcc
Q 020858 166 LTCSYCNVEQPPRAKHCH--DCDRC 188 (320)
Q Consensus 166 ~~C~~C~~~kP~Rs~HC~--~C~rC 188 (320)
..|.+|...-|+|++.|+ .||..
T Consensus 94 ~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 94 SVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp EEETTTCCEECTTCSSCSCTTTTSC
T ss_pred EeeccccccCCchhhccchhhCCCc
Confidence 789999999999999999 48764
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=21.05 E-value=20 Score=33.42 Aligned_cols=24 Identities=33% Similarity=0.919 Sum_probs=0.0
Q ss_pred eecccCCcc--cCCCCccCcCCCccc
Q 020858 166 LTCSYCNVE--QPPRAKHCHDCDRCV 189 (320)
Q Consensus 166 ~~C~~C~~~--kP~Rs~HC~~C~rCV 189 (320)
.-|..|+.. --.|-|||+.||+.+
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp --------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEe
Confidence 458888763 334789999998743
Done!