BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020859
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 176/309 (56%), Positives = 248/309 (80%), Gaps = 3/309 (0%)
Query: 4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFI 63
+ SA+++LD+KG+VL+ R+YRGDV + E F L+EK+ + P++ GV +++I
Sbjct: 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGM-LSPILAHGGVRFMWI 60
Query: 64 QHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDF 123
+H+N+YL+ S++N + + FL++VV VF YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 124 GYPQYTEANILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVN 182
GYPQ T++ IL EFI + +++E RPP VTNAVSWRSEGI+Y+KNEVFLDV+E VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 183 ILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFH 242
+LV++NG ++RS++VG++KMR +LSGMPE +LGLND++L + GR K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239
Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARS 302
QCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPLIW+E+ +E+HS SR+E +VKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299
Query: 303 QFKERRCSD 311
QFK R ++
Sbjct: 300 QFKRRSTAN 308
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 128/313 (40%), Positives = 195/313 (62%), Gaps = 14/313 (4%)
Query: 5 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQ 64
+ LF+ + KG VL+ R YR D+ + F +I Q + PV S+ ++
Sbjct: 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVK 59
Query: 65 HSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 124
SN++L ++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDE++DFG
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 125 YPQYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVE 179
YPQ +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 180 HVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK- 232
VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ 239
Query: 233 AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRS 292
+I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+
Sbjct: 240 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRT 299
Query: 293 RVEILVKARSQFK 305
++E+ V +S FK
Sbjct: 300 KLEVKVVIKSNFK 312
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 195/324 (60%), Gaps = 25/324 (7%)
Query: 5 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQ 64
+ LF+ + KG VL+ R YR D+ + F +I Q + PV S+ ++
Sbjct: 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVK 59
Query: 65 HSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFG 124
SN++L ++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDE++DFG
Sbjct: 60 RSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFG 119
Query: 125 YPQYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVE 179
YPQ +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E
Sbjct: 120 YPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 180 HVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTK--------- 230
VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSMEQ 239
Query: 231 --------GK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIW 281
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR +
Sbjct: 240 KLISEEDLGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 299
Query: 282 VEAQVERHSRSRVEILVKARSQFK 305
V V R+++E+ V +S FK
Sbjct: 300 VIPLVREVGRTKLEVKVVIKSNFK 323
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 134/152 (88%), Gaps = 1/152 (0%)
Query: 160 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 219
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 60
Query: 220 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 279
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 119
Query: 280 IWVEAQVERHSRSRVEILVKARSQFKERRCSD 311
IW+E+ +E+HS SR+E +VKA+SQFK R ++
Sbjct: 120 IWIESVIEKHSHSRIEYMVKAKSQFKRRSTAN 151
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 130/152 (85%), Gaps = 1/152 (0%)
Query: 160 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDR 219
SWRSEGI+Y+KNEVFLDV+E VN+LV++NG ++RS++VG++K R +LSG PE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDK 60
Query: 220 ILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPL 279
+L + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+L +YRLNT VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTHVKPL 119
Query: 280 IWVEAQVERHSRSRVEILVKARSQFKERRCSD 311
IW+E+ +E+HS SR+E VKA+SQFK R ++
Sbjct: 120 IWIESVIEKHSHSRIEYXVKAKSQFKRRSTAN 151
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 127 QYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHV 181
Q +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E V
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 60
Query: 182 NILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK-AI 234
N+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK +I
Sbjct: 61 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 120
Query: 235 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRV 294
+DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+++
Sbjct: 121 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 180
Query: 295 EILVKARSQFK 305
E+ V +S FK
Sbjct: 181 EVKVVIKSNFK 191
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 120/191 (62%), Gaps = 12/191 (6%)
Query: 127 QYTEANILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHV 181
Q +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+E V
Sbjct: 8 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESV 67
Query: 182 NILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST------KGK-AI 234
N+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T GK +I
Sbjct: 68 NLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSI 127
Query: 235 DLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRV 294
+DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V V R+++
Sbjct: 128 AIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKL 187
Query: 295 EILVKARSQFK 305
E+ V +S FK
Sbjct: 188 EVKVVIKSNFK 198
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 108/154 (70%), Gaps = 7/154 (4%)
Query: 159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLND 218
+ WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 68
Query: 219 RILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 271
+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 69 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 128
Query: 272 LNTQVKPLIWVEAQVERHSRSRVEILVKARSQFK 305
+ V V R+++E+ V +S FK
Sbjct: 129 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 162
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 7/161 (4%)
Query: 152 PMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPE 211
P + WR EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPE
Sbjct: 16 PRGSHMQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 75
Query: 212 CKLGLNDRILLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGS 264
CK G+ND+I++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG
Sbjct: 76 CKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 135
Query: 265 FDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFK 305
F+LM YR + V V R+++E+ V +S FK
Sbjct: 136 FELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 176
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 105/149 (70%), Gaps = 7/149 (4%)
Query: 164 EGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLE 223
EGI+Y++NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 224 AQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV 276
QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR +
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI 136
Query: 277 KPLIWVEAQVERHSRSRVEILVKARSQFK 305
V V R+++E+ V +S FK
Sbjct: 137 ILPFRVIPLVREVGRTKLEVKVVIKSNFK 165
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 99/143 (69%), Gaps = 7/143 (4%)
Query: 170 KNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 229
+NE+FLDV+E VN+L++ GQ++ + V G + M++YLSGMPECK G+ND+I++E QG+ T
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 179
Query: 230 ------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWV 282
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + V
Sbjct: 180 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 239
Query: 283 EAQVERHSRSRVEILVKARSQFK 305
V R+++E+ V +S FK
Sbjct: 240 IPLVREVGRTKLEVKVVIKSNFK 262
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 90/165 (54%), Gaps = 25/165 (15%)
Query: 159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLG-LN 217
+ WR G++Y NE + DVVE ++ +++ +G + +++ G + LSGMP+ L +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 218 DRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQ-- 275
R+L DD+ FH C+R R+E++R +SFIPPDG+F L++YR+++Q
Sbjct: 68 PRLL---------------DDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNL 112
Query: 276 VKPLIWVEAQV---ERHSRSRVEILVKARSQFKERRCSDINGICI 317
V ++V+ + E S R +I + K+ I GI +
Sbjct: 113 VAIPVYVKHNISFKENSSCGRFDITIGP----KQNMGKTIEGITV 153
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 13/170 (7%)
Query: 136 EFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSD 195
EF ++ RP +S RS+ Q +KNEVFLDVVE +++L+ SNG +++ D
Sbjct: 6 EFQQSKVAPSSAASRP------VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVD 57
Query: 196 VVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRT 255
V G ++++++L E ++GL + + G I +D++ FH V L FE+ R
Sbjct: 58 VQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRI 117
Query: 256 ISFIPPDGSFDLMTYRLNTQVK-PL---IWVEAQVERHSRSRVEILVKAR 301
+ PP G +M Y+L+ + PL ++ Q +R S R+++ +K R
Sbjct: 118 LRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGS-GRLQVYLKLR 166
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 91 VDVFKH----YFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRME 146
VD+ H FE LE+ L N L+D ++FG T+ +L++ I D++R+
Sbjct: 162 VDIXSHATQAIFEILEKSWLPQNCT----LVDXKIEFGVDVTTKEIVLADVIDNDSWRLW 217
Query: 147 VT-----QRPPMAVTNAVSWRSEGIQY-KKNEVFLDVVEHVNILVNSNGQ 190
+ Q+ + + EG+Q KKN F V E V +L+ S Q
Sbjct: 218 PSGDRSQQKDKQSYRDLKEVTPEGLQXVKKN--FEWVAERVELLLKSESQ 265
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 45 DAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEE 104
DA+ + V + N ++ +++ +Y N N + L +H V+V YF + E
Sbjct: 43 DAKHTNFVEFRN-FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCEL 101
Query: 105 SLRDNFVVVYELLDEMMDFG 124
L NF VY ++DEM G
Sbjct: 102 DLVFNFYKVYTVVDEMFLAG 121
>pdb|1WQL|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 186
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 233 AIDLDDIKFHQCVRLARFENDRTISFIPPDG------SFDLMTYRLNTQVKPLIWVEAQV 286
A+ DI++ +R ++ + ++PP G +++ M R+ +V L W E
Sbjct: 46 ALLTQDIQYWMPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVSGLNWTE--- 102
Query: 287 ERHSRSR 293
+ SRSR
Sbjct: 103 DPPSRSR 109
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 91 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 150
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 74 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 133
Query: 151 PPMAV 155
P +A+
Sbjct: 134 PFLAI 138
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 91 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 150
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 145 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 204
Query: 151 PPMAV 155
P +A+
Sbjct: 205 PFLAI 209
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 91 VDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQR 150
V F+H L + + D F + M+ F PQ +L + +K +E R
Sbjct: 144 VQKFRHELSSLADVYINDAFGTAHRAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTR 203
Query: 151 PPMAV 155
P +A+
Sbjct: 204 PFLAI 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,030,943
Number of Sequences: 62578
Number of extensions: 357011
Number of successful extensions: 821
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 22
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)