Query 020859
Match_columns 320
No_of_seqs 155 out of 1195
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 4.9E-75 1.7E-79 569.0 38.3 315 4-320 1-328 (435)
2 1w63_M Adaptor-related protein 100.0 1.6E-75 5.6E-80 570.5 30.7 316 3-320 1-318 (423)
3 1i31_A Clathrin coat assembly 100.0 2.5E-47 8.6E-52 357.9 20.8 194 127-320 1-207 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.8E-42 6.2E-47 317.5 17.7 160 160-320 1-161 (266)
5 3l81_A AP-4 complex subunit MU 100.0 5E-42 1.7E-46 319.5 18.6 168 151-320 14-186 (301)
6 3ml6_A Chimeric complex betwee 100.0 1.3E-41 4.5E-46 326.3 21.1 203 113-320 61-278 (385)
7 1w63_Q Adapter-related protein 100.0 1.8E-33 6.2E-38 238.8 16.7 139 4-145 1-142 (158)
8 2vgl_S AP-2 complex subunit si 100.0 1.7E-32 5.8E-37 228.9 15.5 135 4-141 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 4.1E-31 1.4E-35 222.7 16.9 134 3-142 11-150 (153)
10 2nut_C Vesicle-trafficking pro 95.0 0.35 1.2E-05 41.2 12.2 98 3-100 1-102 (196)
11 3g9h_A Suppressor of yeast pro 94.7 2.5 8.7E-05 38.9 19.6 132 169-319 66-212 (328)
12 4b93_A Vesicle-associated memb 94.0 0.82 2.8E-05 38.7 12.2 84 13-100 10-93 (189)
13 3bw6_A Synaptobrevin homolog Y 93.2 1.6 5.5E-05 35.2 12.1 97 1-99 3-110 (144)
14 4afi_A AP-3 complex subunit de 93.1 1.5 5E-05 36.8 12.0 84 13-100 62-145 (173)
15 2vx8_A Nucleoporin-like protei 92.3 1.1 3.7E-05 37.4 10.1 92 4-100 44-135 (169)
16 1nrj_A Signal recognition part 92.0 1.9 6.5E-05 34.8 10.6 72 4-75 1-92 (158)
17 3cue_A Transport protein parti 91.2 3.5 0.00012 35.7 12.4 25 3-27 1-25 (219)
18 2fh5_A Signal recognition part 90.9 2.3 8E-05 35.9 10.7 94 3-99 9-104 (185)
19 2j3t_C Trafficking protein par 88.7 2.3 7.7E-05 34.4 8.7 91 3-97 1-108 (145)
20 3cpt_A Mitogen-activated prote 88.5 4.9 0.00017 32.4 10.3 92 5-96 38-135 (143)
21 2j3w_A Sedlin, trafficking pro 84.3 11 0.00037 30.1 10.6 95 5-100 6-114 (142)
22 3kyq_A YKT6, synaptobrevin hom 82.9 17 0.00057 30.9 11.7 93 5-99 4-107 (199)
23 3cue_C Transport protein parti 82.8 5.1 0.00018 32.8 8.1 91 3-97 1-114 (159)
24 2j3t_D Trafficking protein par 33.5 31 0.0011 29.7 3.5 21 4-24 2-22 (219)
25 2wl8_A Peroxisomal biogenesis 23.7 1.1E+02 0.0039 23.8 4.9 21 107-127 88-108 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=4.9e-75 Score=569.00 Aligned_cols=315 Identities=39% Similarity=0.738 Sum_probs=273.0
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHH
Q 020859 4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASL 83 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~l~~ 83 (320)
||+|+||+|.+|+++++|+|+++.+++..+.|.+.+..+.+. ..+|++++++++|+|+++++|||+|+++.++||+++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~--~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ--VRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSC--CCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccC--CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 899999999999999999999988888889999998865432 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccchhHHhhhHHHHHHHHHHHhcCCeeeeechhhhhHhhccccccccc-----cCCCCCcccCC
Q 020859 84 LFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNA 158 (320)
Q Consensus 84 ~~~L~~~~~~l~~y~~~l~e~~I~~Nf~~vy~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~ 158 (320)
++|||+++++|++||++++|++|++||++||++||||+|+|+||+|+++.|++++.++++..+. +..+|++++++
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987643 12345566778
Q ss_pred ccCccCCCccccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCC-----C--CC
Q 020859 159 VSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-----T--KG 231 (320)
Q Consensus 159 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-----~--~~ 231 (320)
+|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..++. + ..
T Consensus 159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~ 238 (435)
T 2vgl_M 159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238 (435)
T ss_dssp CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998766543211 0 12
Q ss_pred ceeecccCccccccccccccCCceEEEeCCCCceEEEEEEeeCCCCCcEEEEEEEEEcCceEEEEEEEEeecCCCceec-
Q 020859 232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS- 310 (320)
Q Consensus 232 ~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~e~~~~l~~~~~~~~~~- 310 (320)
.++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.++|++++.+++++|++++++++|+++..+
T Consensus 239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 318 (435)
T 2vgl_M 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ 318 (435)
T ss_dssp -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence 5678999999999999999999999999999999999999988889999999999987777999999999999998765
Q ss_pred eeeEEeeeCC
Q 020859 311 DINGICIICT 320 (320)
Q Consensus 311 ~~~~~~p~p~ 320 (320)
++.+.||+|.
T Consensus 319 ~V~I~IP~P~ 328 (435)
T 2vgl_M 319 KIEVRIPTPL 328 (435)
T ss_dssp EEEEEEECCS
T ss_pred EEEEEEECCC
Confidence 5889999994
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.6e-75 Score=570.50 Aligned_cols=316 Identities=56% Similarity=1.015 Sum_probs=275.3
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHH
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAAS 82 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~l~ 82 (320)
|||+|+||+|.+|+++++|+|+++.+++.++.|.+++..+.+. ...+|++++++++|+|+++++|||+|+++.++||++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5999999999999999999999988888889999998865321 146899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHhhhHHHHHHHHHHHhcCCeeeeechhhhhHhhccccccccccC-CCCCcccCCccC
Q 020859 83 LLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVTQ-RPPMAVTNAVSW 161 (320)
Q Consensus 83 ~~~~L~~~~~~l~~y~~~l~e~~I~~Nf~~vy~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~~~-~~~~~~~~~~~w 161 (320)
+++|||+++++|++||++++|++|++||++||++||||+|+|+||+|++++|+++|.++++..+.++ .++++.++++||
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~w 159 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSW 159 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999988643222 344566778999
Q ss_pred ccCCCccccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCCCCCceeecccCcc
Q 020859 162 RSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDIKF 241 (320)
Q Consensus 162 R~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~~f 241 (320)
|+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||+|
T Consensus 160 r~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~~~~~v~l~d~~f 238 (423)
T 1w63_M 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKF 238 (423)
T ss_dssp SCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------CEEEEEE
T ss_pred cccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-cccCceEcccccc
Confidence 999999999999999999999999999999999999999999999999999999999876654333 2345678999999
Q ss_pred ccccccccccCCceEEEeCCCCceEEEEEEeeCCCCCcEEEEEEEEEcCceEEEEEEEEeecCCCceec-eeeEEeeeCC
Q 020859 242 HQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS-DINGICIICT 320 (320)
Q Consensus 242 H~cV~~~~f~~~~~l~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~p~p~ 320 (320)
||||++++|+++|+|+|+||||+|+||+||++.+..|||.+.|+++..+++++|++++++++|+++..+ ++.+.||+|.
T Consensus 239 HpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~ 318 (423)
T 1w63_M 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPN 318 (423)
T ss_dssp CTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCT
T ss_pred cccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCC
Confidence 999999999999999999999999999999998889999999999987778999999999999998765 5889999994
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=2.5e-47 Score=357.85 Aligned_cols=194 Identities=40% Similarity=0.742 Sum_probs=140.6
Q ss_pred eeechhhhhHhhccccccccc-----cCCCCCcccCCccCccCCCccccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEE
Q 020859 127 QYTEANILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALK 201 (320)
Q Consensus 127 ~~t~~~~L~~~i~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~ 201 (320)
|.||++.|+++|..+++..+. +..+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 689999999999999876532 224566778899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeccchhhhhccCC-------CCCceeecccCccccccccccccCCceEEEeCCCCceEEEEEEeeC
Q 020859 202 MRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNT 274 (320)
Q Consensus 202 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdg~f~Lm~Y~~~~ 274 (320)
|+|+|+|||+|+|+||++..++.+++. ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543321 1135678999999999999999999999999999999999999988
Q ss_pred CCCCcEEEEEEEEEcCceEEEEEEEEeecCCCceec-eeeEEeeeCC
Q 020859 275 QVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS-DINGICIICT 320 (320)
Q Consensus 275 ~~~~P~~v~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~p~p~ 320 (320)
+..+||.+.|++++.+++++||+++++++|++...+ ++.+.||+|.
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~ 207 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 207 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCT
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCC
Confidence 889999999999987777999999999999998766 5889999994
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.8e-42 Score=317.48 Aligned_cols=160 Identities=63% Similarity=1.126 Sum_probs=148.6
Q ss_pred cCccCCCccccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCCCCCceeecccC
Q 020859 160 SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRSTKGKAIDLDDI 239 (320)
Q Consensus 160 ~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~ 239 (320)
+||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~-~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC-TTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc-cccCccCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999987766553 23467889999
Q ss_pred ccccccccccccCCceEEEeCCCCceEEEEEEeeCCCCCcEEEEEEEEEcCceEEEEEEEEeecCCCceec-eeeEEeee
Q 020859 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCS-DINGICII 318 (320)
Q Consensus 240 ~fH~cV~~~~f~~~~~l~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~e~~~~l~~~~~~~~~~-~~~~~~p~ 318 (320)
+||+||++++|+++|+|+|+||||+|+||+||++.+..|||.+.|+++..+.++++++++++++|+++..+ ++.+.||+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~ 159 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPV 159 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEEC
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECC
Confidence 99999999999999999999999999999999988889999999999987778999999999999998876 58899999
Q ss_pred CC
Q 020859 319 CT 320 (320)
Q Consensus 319 p~ 320 (320)
|.
T Consensus 160 P~ 161 (266)
T 4en2_M 160 PN 161 (266)
T ss_dssp CT
T ss_pred CC
Confidence 94
No 5
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=319.47 Aligned_cols=168 Identities=29% Similarity=0.535 Sum_probs=138.1
Q ss_pred CCCcccCCc-cCccCCCccccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCCC
Q 020859 151 PPMAVTNAV-SWRSEGIQYKKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRST 229 (320)
Q Consensus 151 ~~~~~~~~~-~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (320)
+++++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++.+..+
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 344555655 99985 899999999999999999999999999999999999999999999999999998776655444
Q ss_pred CCceeecccCccccccccccccCCceEEEeCCCCceEEEEEEeeCCC--CCcEEEEEEEEEcCc-eEEEEEEEEeecCCC
Q 020859 230 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQV--KPLIWVEAQVERHSR-SRVEILVKARSQFKE 306 (320)
Q Consensus 230 ~~~~~~l~d~~fH~cV~~~~f~~~~~l~F~PPdg~f~Lm~Y~~~~~~--~~P~~v~~~~~~~~~-~~~e~~~~l~~~~~~ 306 (320)
...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.++|++++.++ +++|+.++++++|++
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~ 171 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLS 171 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCT
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCC
Confidence 45678899999999999999999999999999999999999998764 799999999999765 799999999999999
Q ss_pred ceec-eeeEEeeeCC
Q 020859 307 RRCS-DINGICIICT 320 (320)
Q Consensus 307 ~~~~-~~~~~~p~p~ 320 (320)
+..+ ++.++||+|.
T Consensus 172 ~~~~~nV~I~IPvP~ 186 (301)
T 3l81_A 172 KSQALNVRLHLPLPR 186 (301)
T ss_dssp TCEEEEEEEEEECCT
T ss_pred CcEEEEEEEEEcCCC
Confidence 9877 5889999995
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=326.34 Aligned_cols=203 Identities=35% Similarity=0.613 Sum_probs=157.4
Q ss_pred HHHHHHHHhcCCeeeeechhhhhHhhcccccccccc---CCCCCcccCCc-cC---ccCCCccccceEEEEEEEeEeEEE
Q 020859 113 VYELLDEMMDFGYPQYTEANILSEFIKTDAYRMEVT---QRPPMAVTNAV-SW---RSEGIQYKKNEVFLDVVEHVNILV 185 (320)
Q Consensus 113 vy~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~~~~---~~~~~~~~~~~-~w---R~~~~~~~~nei~vdv~E~i~~~~ 185 (320)
+..+-..+++.|+.+-..... .+. +... -.. ...|...++++ || |+.|++|+||||||||+|++++++
T Consensus 61 A~~~g~~Ll~~G~i~hv~~~~--~F~--d~~~-y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~ 135 (385)
T 3ml6_A 61 ARKYASGLLKAGLIRHTVNKI--TFS--EQCY-YVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLM 135 (385)
T ss_dssp HHHHHHHHHHHSSEEESSSCS--SCC--SSSE-EEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCcEEEcCCcc--eec--Ccce-EEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEE
Confidence 335667778889998875321 011 0000 000 12223334444 99 789999999999999999999999
Q ss_pred cCCCcEEEEEEEEEEEEEEEeCCCCeEEEEeccchhhhhccCC-------CCCceeecccCccccccccccccCCceEEE
Q 020859 186 NSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISF 258 (320)
Q Consensus 186 ~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~d~~fH~cV~~~~f~~~~~l~F 258 (320)
+++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..++. +...++.|+||+||+||++++|+++|+|+|
T Consensus 136 ~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsF 215 (385)
T 3ml6_A 136 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISF 215 (385)
T ss_dssp CTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSCSEEEE
T ss_pred CCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHccccceEEE
Confidence 9999999999999999999999999999999999776654321 123578899999999999999999999999
Q ss_pred eCCCCceEEEEEEeeCCCCCcEEEEEEEEEcCceEEEEEEEEeecCCCceece-eeEEeeeCC
Q 020859 259 IPPDGSFDLMTYRLNTQVKPLIWVEAQVERHSRSRVEILVKARSQFKERRCSD-INGICIICT 320 (320)
Q Consensus 259 ~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~e~~~~l~~~~~~~~~~~-~~~~~p~p~ 320 (320)
+||||+|+||+||++.+..+||.+.|++++.++++++++++++++|++++.|+ +.+.||+|.
T Consensus 216 iPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~nV~I~IP~P~ 278 (385)
T 3ml6_A 216 IPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPL 278 (385)
T ss_dssp CCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEEEEEEEECCT
T ss_pred eCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEEEEEEecCCC
Confidence 99999999999999888899999999999988889999999999999998775 889999994
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.8e-33 Score=238.79 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=129.0
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCCh---hHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 020859 4 AVSALFLLDIKGRVLVWRDYRGDVSA---KQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNA 80 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y~~~~~~---~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~ 80 (320)
||+|+||+|++|+++++|||+++.++ ...+.|++.+.++++ +.+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP---KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS---SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC---CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999988765 456788888876542 369999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHhhhHHHHHHHHHHHhcCCeeeeechhhhhHhhccccccc
Q 020859 81 ASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDAYRM 145 (320)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~~l~e~~I~~Nf~~vy~lLDEiid~G~p~~t~~~~L~~~i~~~~~~~ 145 (320)
++++++||+++++|++|||+++|++|++||+++|++||||+|+|+||+|+++.|+++|..++...
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~ 142 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQ 142 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999877653
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=1.7e-32 Score=228.94 Aligned_cols=135 Identities=20% Similarity=0.280 Sum_probs=122.9
Q ss_pred ceeEEEEEcCCCCEEEEEccCCC---CChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 020859 4 AVSALFLLDIKGRVLVWRDYRGD---VSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNA 80 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y~~~---~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~ 80 (320)
||+|++|+|++|+++++|||++. ..++..+.|++++..+++ +.+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~---~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDA---KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCT---TSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCC---CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 89999999999999999999943 234577899999886532 369999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHhhhHHHHHHHHHHHhcCCeeeeec-hhhhhHhhccc
Q 020859 81 ASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTE-ANILSEFIKTD 141 (320)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~~l~e~~I~~Nf~~vy~lLDEiid~G~p~~t~-~~~L~~~i~~~ 141 (320)
++++++||+++++|++|||+++|++|++||+++|++||||+|+|+||+|+ .+.|+.++.++
T Consensus 78 l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999995 67788887654
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=4.1e-31 Score=222.71 Aligned_cols=134 Identities=19% Similarity=0.309 Sum_probs=117.3
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC-C---hhHHH-HHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCC
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGDV-S---AKQAE-RFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQN 77 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~~-~---~~~~~-~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~ 77 (320)
.||+|++|+|.+|+++++|||+++. + +...+ .+++++ .+ ..+|++.++++.++|+++++|||+++++.+
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~-~r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT-HR-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHH-SS-----CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-----CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 4999999999999999999999863 3 23333 456655 22 137999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh-cccchhHHhhhHHHHHHHHHHHhcCCeeeeechhhhhHhhcccc
Q 020859 78 CNAASLLFFLHRVVDVFKHYF-EELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFIKTDA 142 (320)
Q Consensus 78 ~n~l~~~~~L~~~~~~l~~y~-~~l~e~~I~~Nf~~vy~lLDEiid~G~p~~t~~~~L~~~i~~~~ 142 (320)
+||++++++|++++++|+.|| ++++|++|++||+++|++||||+|+|+||+|+++.+.+++...+
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 88999999999999999999999999999999999999987653
No 10
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=94.97 E-value=0.35 Score=41.24 Aligned_cols=98 Identities=10% Similarity=0.124 Sum_probs=62.8
Q ss_pred cceeEEEEEcC-CCCEEEEEccCCCC---ChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCC
Q 020859 3 GAVSALFLLDI-KGRVLVWRDYRGDV---SAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNC 78 (320)
Q Consensus 3 ~MI~~i~Il~~-~G~~ll~k~y~~~~---~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~ 78 (320)
+||....|.-. +|-+|.+..-.+.. .+.....+.+.+..+-..+...---+..+++.|.|...+++.++|+++.+-
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 46666666554 56666663321111 223344455555544321111122567789999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc
Q 020859 79 NAASLLFFLHRVVDVFKHYFEE 100 (320)
Q Consensus 79 n~l~~~~~L~~~~~~l~~y~~~ 100 (320)
+.-.++.||..+.+-+..-++.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998877765553
No 11
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=94.73 E-value=2.5 Score=38.85 Aligned_cols=132 Identities=16% Similarity=0.198 Sum_probs=79.0
Q ss_pred ccceEEEEEEEeEeEEEcCCCcEEEEEEEEEEEEEEEeCC-------CCeEEEEeccchhhhhccCCCCCceeecccCcc
Q 020859 169 KKNEVFLDVVEHVNILVNSNGQIIRSDVVGALKMRTYLSG-------MPECKLGLNDRILLEAQGRSTKGKAIDLDDIKF 241 (320)
Q Consensus 169 ~~nei~vdv~E~i~~~~~~~G~i~~~~v~G~i~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~l~d~~f 241 (320)
...++-..|.|.|||.+.. |.+.++.|.|.|.+. |..| .+.+.+.|++-..++.-. =+-+|
T Consensus 66 ~~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv~----------pN~~f 133 (328)
T 3g9h_A 66 SQFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKVI----------LNQAF 133 (328)
T ss_dssp -CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEEE----------ECTTT
T ss_pred CCCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhheee----------CCHHH
Confidence 3568899999999999865 679999999997664 4554 245778886543222211 11122
Q ss_pred ccccccccccCCceEEEeCC---CCceEEEEEEeeCCCCCcEEEEEEEEEcCc-eEEEEEEEEeecCCC---c-eeceee
Q 020859 242 HQCVRLARFENDRTISFIPP---DGSFDLMTYRLNTQVKPLIWVEAQVERHSR-SRVEILVKARSQFKE---R-RCSDIN 313 (320)
Q Consensus 242 H~cV~~~~f~~~~~l~F~PP---dg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~-~~~e~~~~l~~~~~~---~-~~~~~~ 313 (320)
-.++.- ..-.|-++ ...-.+++|+++. ...|+.+.|.-+-... ..+-+.+++...++. . ...|+.
T Consensus 134 v~~~~~------~eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~ 206 (328)
T 3g9h_A 134 IERVAP------EEFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLV 206 (328)
T ss_dssp EEEEET------TEEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEE
T ss_pred hccCCC------CCEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEE
Confidence 222221 11222221 1236789999975 7889998887765432 344444555556665 2 245677
Q ss_pred EEeeeC
Q 020859 314 GICIIC 319 (320)
Q Consensus 314 ~~~p~p 319 (320)
+.+||.
T Consensus 207 ~~V~ld 212 (328)
T 3g9h_A 207 VFVNID 212 (328)
T ss_dssp EEEEBC
T ss_pred EEEEeC
Confidence 777764
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.99 E-value=0.82 Score=38.74 Aligned_cols=84 Identities=8% Similarity=0.173 Sum_probs=59.4
Q ss_pred CCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 020859 13 IKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVD 92 (320)
Q Consensus 13 ~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~l~~~~~L~~~~~ 92 (320)
.+|.++|+.+-... .+ ...+.+.++.+-... ..--.+..+++.|.|...+++.++|+++.+-+--.++.||+.+.+
T Consensus 10 Arg~~iLae~t~~~--gn-f~~ia~~iL~kip~~-~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 10 ARGTTILAKHAWCG--GN-FLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EETTEEEEEEESSE--EC-HHHHHHHHHTTCCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCCC--CC-HHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 46888888753221 11 333444555432111 112256789999999999999999999999999999999999998
Q ss_pred HHHHHhcc
Q 020859 93 VFKHYFEE 100 (320)
Q Consensus 93 ~l~~y~~~ 100 (320)
-+..-++.
T Consensus 86 eF~~~~~~ 93 (189)
T 4b93_A 86 RFQTTYGS 93 (189)
T ss_dssp HHHHHHGG
T ss_pred HHHhhccc
Confidence 88776664
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=93.18 E-value=1.6 Score=35.23 Aligned_cols=97 Identities=8% Similarity=0.073 Sum_probs=63.7
Q ss_pred CccceeEEEEEcCCC--CEEEEEccCCC----CChhHHHHH----HHHhhccCCCCCCCCCEEEeCCEEEEEE-EeCCEE
Q 020859 1 MAGAVSALFLLDIKG--RVLVWRDYRGD----VSAKQAERF----FTKLIEKDGDAQSQDPVVYDNGVSYLFI-QHSNVY 69 (320)
Q Consensus 1 ~~~MI~~i~Il~~~G--~~ll~k~y~~~----~~~~~~~~f----~~~i~~~~~~~~~~~pi~~~~~~~~v~~-~~~~l~ 69 (320)
|+|=|-++.|+-.++ -++|+..+.-. ..|+...+| -+.+..+...+ .---++.+++.+.|. ..+++.
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~--~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG--QRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT--EEEEEEETTEEEEEEECTTSEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC--ceEEEEeCCEEEEEEEecCCEE
Confidence 677788887776443 45666555311 224444444 34454443211 112567788888888 778999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q 020859 70 LMTASRQNCNAASLLFFLHRVVDVFKHYFE 99 (320)
Q Consensus 70 ~v~~~~~~~n~l~~~~~L~~~~~~l~~y~~ 99 (320)
++|+++.+-+.-.++.||+.+.+-...-++
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988776665444
No 14
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=93.09 E-value=1.5 Score=36.76 Aligned_cols=84 Identities=8% Similarity=0.157 Sum_probs=60.4
Q ss_pred CCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 020859 13 IKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVD 92 (320)
Q Consensus 13 ~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~l~~~~~L~~~~~ 92 (320)
.+|.++|+.+-.... -.+.+.+.++.+-... ...-.++.+++.|.|...+++.++|+++.+-.--.++.||+.+.+
T Consensus 62 Arg~tiLAE~t~~~g---nf~~va~~iL~kip~~-~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 62 ARGTTILAKHAWCGG---NFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp EETTEEEEEEESSCC---CHHHHHHHHHTTSCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred ECCCEEEEEccCCCC---CHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 368888886533221 1345555666543211 112266789999999999999999999999999999999999998
Q ss_pred HHHHHhcc
Q 020859 93 VFKHYFEE 100 (320)
Q Consensus 93 ~l~~y~~~ 100 (320)
-+..-++.
T Consensus 138 eF~~~yg~ 145 (173)
T 4afi_A 138 RFQTTYGS 145 (173)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhch
Confidence 88777764
No 15
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=92.27 E-value=1.1 Score=37.40 Aligned_cols=92 Identities=8% Similarity=0.144 Sum_probs=60.7
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHH
Q 020859 4 AVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASL 83 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~l~~v~~~~~~~n~l~~ 83 (320)
|....-++. +|.++|+.+-.... ......+.++.+-..+ ...--++.+++.|-|...+++.++|+++.+-+--.+
T Consensus 44 M~ilYa~Va-RG~~VLae~t~~~g---nf~~iak~ll~kl~~~-~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~A 118 (169)
T 2vx8_A 44 MAILFAVVA-RGTTILAKHAWCGG---NFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 118 (169)
T ss_dssp SCCCEEEEE-ETTEEEEEEESSCB---SHHHHHHHHHTTSCSS-CEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CceEEEEEE-cCCEEEEEeccCCC---CHHHHHHHHHhhCCCC-CCceEEEECCEEEEEEEECCEEEEEEEccccchHHH
Confidence 433334444 46666665422111 2333444555442211 112356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020859 84 LFFLHRVVDVFKHYFEE 100 (320)
Q Consensus 84 ~~~L~~~~~~l~~y~~~ 100 (320)
+.||+.+.+-+..-++.
T Consensus 119 F~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 119 FSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988776664
No 16
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=92.02 E-value=1.9 Score=34.77 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=48.3
Q ss_pred ceeEEEEEcCCCCEEEEEcc-CCCCChhHHHHHHHHhhccCCCCC-C---------CCCEEEe-------CCEEEEEEE-
Q 020859 4 AVSALFLLDIKGRVLVWRDY-RGDVSAKQAERFFTKLIEKDGDAQ-S---------QDPVVYD-------NGVSYLFIQ- 64 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y-~~~~~~~~~~~f~~~i~~~~~~~~-~---------~~pi~~~-------~~~~~v~~~- 64 (320)
||+++.|+..+|+++++..= ........+.+|..+++..+.... . --+++.+ ++..+.|+-
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 89999999999999999552 223444578899999887653110 0 1357777 666666643
Q ss_pred -eCCEEEEEEec
Q 020859 65 -HSNVYLMTASR 75 (320)
Q Consensus 65 -~~~l~~v~~~~ 75 (320)
.-.||||++-.
T Consensus 81 kQP~LyfVvtya 92 (158)
T 1nrj_A 81 KQPELYFVVTFA 92 (158)
T ss_dssp ETTEEEEEEEES
T ss_pred CCCcEEEEEEec
Confidence 45699888764
No 17
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=91.23 E-value=3.5 Score=35.68 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=21.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGDV 27 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~~ 27 (320)
|+|.+|+|+|+.|.+|++|.|..+.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 5799999999999999999997544
No 18
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=90.89 E-value=2.3 Score=35.91 Aligned_cols=94 Identities=7% Similarity=0.120 Sum_probs=62.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChhHHHHHHHHhhccCCCCCCCCCEEEeCCEEEEEEEeCC--EEEEEEecCCCCH
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSN--VYLMTASRQNCNA 80 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pi~~~~~~~~v~~~~~~--l~~v~~~~~~~n~ 80 (320)
+|++.+.|+++.|=+|-+..-......+.+.++.+.++-.... ..+.+..+++.+=|...|+ |.||++-..--+.
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~---~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG---GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc---CCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 6999999999999888873212212234577777777655332 2456778998888888774 7888887765566
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 020859 81 ASLLFFLHRVVDVFKHYFE 99 (320)
Q Consensus 81 l~~~~~L~~~~~~l~~y~~ 99 (320)
..+-+||..+...+.+-|+
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666664
No 19
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=88.68 E-value=2.3 Score=34.43 Aligned_cols=91 Identities=11% Similarity=0.196 Sum_probs=53.3
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC----C-hh----------HHHHHHHHhhccCCCCCCCCCEEEeCCE-EEEEEEeC
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGDV----S-AK----------QAERFFTKLIEKDGDAQSQDPVVYDNGV-SYLFIQHS 66 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~~----~-~~----------~~~~f~~~i~~~~~~~~~~~pi~~~~~~-~~v~~~~~ 66 (320)
||+.+++|+|++|.+|++|.|.... + .+ .+..+.+++. +... ...--.+..+++ ...|..-.
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~kls-p~~~-~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMS-PLDM-KDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHC-SSCC-SSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhC-CCCC-CCceEEEecCCEEEEEEEcCC
Confidence 5799999999999999999996422 1 11 1222333331 1111 011124456665 44556667
Q ss_pred CEEEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Q 020859 67 NVYLMTASRQNCNAASLLFFLHRVV-DVFKHY 97 (320)
Q Consensus 67 ~l~~v~~~~~~~n~l~~~~~L~~~~-~~l~~y 97 (320)
++-|+.+++..++. +=++|+++. ++.-+|
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 89999999876543 335666666 454443
No 20
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=88.51 E-value=4.9 Score=32.42 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=61.7
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCC---h-hHHHHHHHHhhccCC-CCCCCCCEE-EeCCEEEEEEEeCCEEEEEEecCCC
Q 020859 5 VSALFLLDIKGRVLVWRDYRGDVS---A-KQAERFFTKLIEKDG-DAQSQDPVV-YDNGVSYLFIQHSNVYLMTASRQNC 78 (320)
Q Consensus 5 I~~i~Il~~~G~~ll~k~y~~~~~---~-~~~~~f~~~i~~~~~-~~~~~~pi~-~~~~~~~v~~~~~~l~~v~~~~~~~ 78 (320)
+.+|+|.|++|=+++.-...+... + +.+..|-...-+... .-.++..++ .++++.+++.....+++-.++..+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 689999999999999877654222 1 233444333222110 001234444 6788899999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 020859 79 NAASLLFFLHRVVDVFKH 96 (320)
Q Consensus 79 n~l~~~~~L~~~~~~l~~ 96 (320)
|.-.++++=+.+..++++
T Consensus 118 NtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHH
Confidence 988888776666666654
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=84.29 E-value=11 Score=30.11 Aligned_cols=95 Identities=8% Similarity=0.100 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCCh----hH--HHHHH-HH---hhccCCCCCCCCCEEE---eCCE-EEEEEEeCCEEE
Q 020859 5 VSALFLLDIKGRVLVWRDYRGDVSA----KQ--AERFF-TK---LIEKDGDAQSQDPVVY---DNGV-SYLFIQHSNVYL 70 (320)
Q Consensus 5 I~~i~Il~~~G~~ll~k~y~~~~~~----~~--~~~f~-~~---i~~~~~~~~~~~pi~~---~~~~-~~v~~~~~~l~~ 70 (320)
|.+++|+|++|++|+++.|...... .. .-.|. .. +...........-+.. .+++ .+.|..-.++-|
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg~Kf 85 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 85 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEE
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCCcEE
Confidence 7899999999999999999754221 11 11110 00 1110000001112223 3443 355566678999
Q ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 020859 71 MTASRQNCNAASLLFFLHRVVDVFKHYFEE 100 (320)
Q Consensus 71 v~~~~~~~n~l~~~~~L~~~~~~l~~y~~~ 100 (320)
+.+++.. +.--+-.+++++.++.-+|.-+
T Consensus 86 vl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 86 IMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp EEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 9998753 3445556777777666665543
No 22
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=82.86 E-value=17 Score=30.88 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=61.4
Q ss_pred eeEEEEEcCCCC--EEEEEccC-C---CCChhHHHH---HHH-HhhccCCCCCCCCCEEEeCCEEEE-EEEeCCEEEEEE
Q 020859 5 VSALFLLDIKGR--VLVWRDYR-G---DVSAKQAER---FFT-KLIEKDGDAQSQDPVVYDNGVSYL-FIQHSNVYLMTA 73 (320)
Q Consensus 5 I~~i~Il~~~G~--~ll~k~y~-~---~~~~~~~~~---f~~-~i~~~~~~~~~~~pi~~~~~~~~v-~~~~~~l~~v~~ 73 (320)
|-++.|+...|+ .++...|. + -..|+...+ |.. .+..+...+ .--.+..+++.|. |...+++.++|+
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~--~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG--SRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT--EEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC--CeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 567778776555 24455543 1 122544433 333 444443211 1125667888887 888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHhc
Q 020859 74 SRQNCNAASLLFFLHRVVDVFKHYFE 99 (320)
Q Consensus 74 ~~~~~n~l~~~~~L~~~~~~l~~y~~ 99 (320)
++.+-+.-.++.||+.+.+-+..-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887777665
No 23
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=82.80 E-value=5.1 Score=32.85 Aligned_cols=91 Identities=10% Similarity=0.166 Sum_probs=49.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCC-------CC---h-h----------HHHHHHHHhhccCCCCCCCCCEEEeCCEE-E
Q 020859 3 GAVSALFLLDIKGRVLVWRDYRGD-------VS---A-K----------QAERFFTKLIEKDGDAQSQDPVVYDNGVS-Y 60 (320)
Q Consensus 3 ~MI~~i~Il~~~G~~ll~k~y~~~-------~~---~-~----------~~~~f~~~i~~~~~~~~~~~pi~~~~~~~-~ 60 (320)
|||.+|+|+|++|++|++|.|... .+ . + .+..+.+++. +... ...--.+..+.+. +
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls-~~~~-~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLS-KGSV-KNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSC-CSSS-CCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC-CCCC-CCCeEEEeeCCEEEE
Confidence 578999999999999999999531 10 1 0 1122222221 1110 0011233445544 4
Q ss_pred EEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH-HHHHH
Q 020859 61 LFIQHSNVYLMTASRQNCNAASLLFFLHRVVD-VFKHY 97 (320)
Q Consensus 61 v~~~~~~l~~v~~~~~~~n~l~~~~~L~~~~~-~l~~y 97 (320)
.|..-.++-||++++..++.+ =++|+++.+ +.-+|
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY 114 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence 445556899999998765533 245666665 54444
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=33.55 E-value=31 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=19.1
Q ss_pred ceeEEEEEcCCCCEEEEEccC
Q 020859 4 AVSALFLLDIKGRVLVWRDYR 24 (320)
Q Consensus 4 MI~~i~Il~~~G~~ll~k~y~ 24 (320)
.|-++||+|+.|.+++++.|.
T Consensus 2 ~iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 2 AIFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp CEEEEEEECTTSCEEEEEECC
T ss_pred eEEEEEEEecCCceEEecccC
Confidence 389999999999999998776
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=23.75 E-value=1.1e+02 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhcCCeee
Q 020859 107 RDNFVVVYELLDEMMDFGYPQ 127 (320)
Q Consensus 107 ~~Nf~~vy~lLDEiid~G~p~ 127 (320)
+.+|..|.+++.+|=+.|.|-
T Consensus 88 ~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCc
Confidence 468888889999998888874
Done!