Query 020862
Match_columns 320
No_of_seqs 46 out of 48
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:17:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hi2_A Fimbrial protein; type 67.6 5.7 0.00019 32.0 4.2 18 286-303 73-94 (158)
2 2l2t_A Receptor tyrosine-prote 67.5 5.3 0.00018 28.3 3.5 29 242-270 11-39 (44)
3 2ks1_B Epidermal growth factor 65.2 4 0.00014 28.8 2.5 29 242-270 12-40 (44)
4 2jwa_A Receptor tyrosine-prote 58.0 8.3 0.00028 27.4 3.1 26 243-269 14-39 (44)
5 4djk_A Probable glutamate/gamm 50.8 27 0.00091 31.8 6.0 37 195-232 217-253 (511)
6 2vpz_C Hypothetical membrane s 49.6 28 0.00095 30.7 5.8 22 218-239 16-37 (253)
7 2knc_B Integrin beta-3; transm 36.5 34 0.0011 26.2 3.7 28 254-281 25-55 (79)
8 3j1r_A Archaeal adhesion filam 36.0 38 0.0013 21.9 3.3 19 243-261 4-22 (26)
9 3ar4_A Sarcoplasmic/endoplasmi 31.6 1.1E+02 0.0039 31.7 7.8 42 239-280 86-127 (995)
10 2vl6_A SSO MCM N-TER, minichro 31.5 25 0.00086 30.9 2.6 20 281-300 111-130 (268)
11 3gia_A Uncharacterized protein 31.3 50 0.0017 29.4 4.5 70 197-267 206-297 (444)
12 1ltl_A DNA replication initiat 30.8 26 0.00089 31.2 2.6 20 281-300 104-123 (279)
13 2jp3_A FXYD domain-containing 29.3 33 0.0011 26.4 2.6 24 245-268 22-45 (67)
14 2zxe_A Na, K-ATPase alpha subu 28.1 1.2E+02 0.004 31.9 7.2 40 241-280 134-173 (1028)
15 3rlf_F Maltose transport syste 25.6 1E+02 0.0036 30.0 6.0 44 215-258 13-56 (514)
16 2k1a_A Integrin alpha-IIB; sin 25.0 74 0.0025 22.1 3.5 9 255-263 26-34 (42)
17 2jo1_A Phospholemman; FXYD1, N 24.2 56 0.0019 25.5 3.0 23 245-267 21-43 (72)
18 2gsm_B Cytochrome C oxidase su 23.7 2.8E+02 0.0096 24.9 8.0 16 289-304 109-127 (262)
19 3kdf_D Replication protein A 3 23.5 23 0.00079 28.1 0.8 24 281-304 76-99 (132)
20 3udc_A Small-conductance mecha 23.1 1.8E+02 0.0061 25.7 6.6 47 243-296 93-140 (285)
21 2zxe_G FXYD10, phospholemman-l 22.8 45 0.0015 26.1 2.3 24 245-268 24-47 (74)
22 1ltl_A DNA replication initiat 22.7 27 0.00091 31.2 1.1 19 283-301 210-228 (279)
23 3ixz_A Potassium-transporting 22.3 64 0.0022 33.8 4.0 38 242-279 140-177 (1034)
24 3f8h_A Putative polyketide cyc 22.0 44 0.0015 26.2 2.1 39 264-302 57-103 (150)
25 1v54_I STA, cytochrome C oxida 21.4 83 0.0029 24.1 3.5 33 246-278 22-55 (73)
26 2k21_A Potassium voltage-gated 21.4 41 0.0014 28.9 1.9 25 216-240 52-76 (138)
27 3kf6_A Protein STN1; OB fold, 21.3 22 0.00076 30.1 0.3 32 285-316 97-128 (159)
28 2l8s_A Integrin alpha-1; trans 21.1 1.4E+02 0.0047 21.9 4.5 9 255-263 25-33 (54)
29 2jaf_A Halorhodopsin, HR; chro 20.2 1.1E+02 0.0038 27.8 4.7 38 192-238 14-51 (274)
No 1
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=67.58 E-value=5.7 Score=32.03 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=12.7
Q ss_pred CCCcEEE-E---eEEEEeeecC
Q 020862 286 KSGQFVK-V---TGVCNSTYSN 303 (320)
Q Consensus 286 kdGQyVK-V---TGVVTC~~~~ 303 (320)
..|.||+ | .|+++||+.+
T Consensus 73 ~~g~Yv~sv~v~~G~It~t~~~ 94 (158)
T 2hi2_A 73 IKGKYVKEVEVKNGVVTATMLS 94 (158)
T ss_dssp SCCSSEEEEEEETTEEEEEECS
T ss_pred ccccceEEEEecCCEEEEEecC
Confidence 3477763 3 6899999853
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=67.49 E-value=5.3 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 020862 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAI 270 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l 270 (320)
+|..-||+.++++++.+++|=.+|+||-.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 45556677677777777777777777644
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=65.22 E-value=4 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 020862 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAI 270 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l 270 (320)
+|..-||+.++++++.+++|=.+|+||-.
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 45566777677766667777777776643
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=58.03 E-value=8.3 Score=27.36 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchh
Q 020862 243 ILLIVVLVLFAVIAAIFIWNTCWGRKA 269 (320)
Q Consensus 243 iLLivV~~lf~~VaalfiWN~~wgrr~ 269 (320)
|...||+ ++.+|++.++|-++++||-
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 4455555 5567777777777887764
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=50.79 E-value=27 Score=31.83 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=26.3
Q ss_pred cccccccccCccccccccCCchhHHHHHHHHHHHHhhh
Q 020862 195 NQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAG 232 (320)
Q Consensus 195 n~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG 232 (320)
-.+++++.+|-+ .-+|++||++++.++.+.++.++.-
T Consensus 217 ~e~~~~~a~E~k-~P~k~ip~ai~~~~~~~~~~y~~~~ 253 (511)
T 4djk_A 217 VEASATHVNEMS-NPGRDYPLAMLLLMVAAICLSSVGG 253 (511)
T ss_dssp GGGGTGGGSSSS-CCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CcccchhHHHHHHHHHHHHHHHHHH
Confidence 456677777744 2368999999998888777765543
No 6
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=49.62 E-value=28 Score=30.70 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhc
Q 020862 218 LWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AV 239 (320)
.|++.-+|..|+.+|+|++++.
T Consensus 16 ~~i~~y~f~~g~aaG~~~~~~~ 37 (253)
T 2vpz_C 16 WTNALHFVLVGLAGGVALLAAL 37 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999864
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.51 E-value=34 Score=26.23 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhc---chhhhhhhhcCCCcc
Q 020862 254 VIAAIFIWNTCWG---RKAITDFISCHPDTD 281 (320)
Q Consensus 254 ~VaalfiWN~~wg---rr~l~~Fv~ryPDad 281 (320)
-+++|++|-.+-. ||+-.+|-+....+.
T Consensus 25 Gllllliwk~~~~i~DrrE~~kFEkE~~~~~ 55 (79)
T 2knc_B 25 GLAALLIWKLLITIHDRKEFAKFEEERARAK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444666665443 899999987666553
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=35.95 E-value=38 Score=21.91 Aligned_cols=19 Identities=32% Similarity=0.730 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020862 243 ILLIVVLVLFAVIAAIFIW 261 (320)
Q Consensus 243 iLLivV~~lf~~VaalfiW 261 (320)
|+-.+.+.++++++|+++|
T Consensus 4 iVA~~lLIviav~aaVlly 22 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLY 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555566666665
No 9
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=31.56 E-value=1.1e+02 Score=31.66 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=23.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020862 239 VHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 239 VhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
++.++--+++++++.+.+++=.|.-.+.++++..+.+.-|+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~ 127 (995)
T 3ar4_A 86 ITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEM 127 (995)
T ss_dssp GSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSE
T ss_pred hhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCe
Confidence 345543333333444444455677777788888776666653
No 10
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=31.47 E-value=25 Score=30.93 Aligned_cols=20 Identities=15% Similarity=0.522 Sum_probs=16.9
Q ss_pred ccccCCCCcEEEEeEEEEee
Q 020862 281 DLRTAKSGQFVKVTGVCNST 300 (320)
Q Consensus 281 dLR~AkdGQyVKVTGVVTC~ 300 (320)
+||....|++|+|.|+||-+
T Consensus 111 ~l~~~~igkLV~v~GiV~r~ 130 (268)
T 2vl6_A 111 KIRSTDIGKLITIDGILVKV 130 (268)
T ss_dssp GCCGGGTTSEEEEEEEEEEE
T ss_pred cCChhHCCCeEEEEEEEEEc
Confidence 66778899999999999744
No 11
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=31.32 E-value=50 Score=29.43 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=0.0
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHH----------------------HHHHHHHHHH
Q 020862 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPIL----------------------LIVVLVLFAV 254 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiL----------------------LivV~~lf~~ 254 (320)
++.++.+|-+ .=+|++||+++|.++.+.++-++.-..++..+....+ ++.++++++.
T Consensus 206 ~~~~~~~e~k-~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~ 284 (444)
T 3gia_A 206 VITNASEHIE-NPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSI 284 (444)
T ss_dssp HHHTTGGGBS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcc-CcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhcc
Q 020862 255 IAAIFIWNTCWGR 267 (320)
Q Consensus 255 VaalfiWN~~wgr 267 (320)
..++..|-..-.|
T Consensus 285 ~~~~~~~~~~~sR 297 (444)
T 3gia_A 285 SSAMNATIYGGAN 297 (444)
T ss_dssp HHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHH
No 12
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=30.78 E-value=26 Score=31.24 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=17.3
Q ss_pred ccccCCCCcEEEEeEEEEee
Q 020862 281 DLRTAKSGQFVKVTGVCNST 300 (320)
Q Consensus 281 dLR~AkdGQyVKVTGVVTC~ 300 (320)
+||....|++|+|.|+||-+
T Consensus 104 ~L~~~~igkLV~v~GiV~r~ 123 (279)
T 1ltl_A 104 ELRSKFIGKFVAVDGIVRKT 123 (279)
T ss_dssp GCCGGGTTSEEEEEEEEEEE
T ss_pred cCChhhCCCEEEEEEEEEEe
Confidence 67778899999999999754
No 13
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=29.34 E-value=33 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcch
Q 020862 245 LIVVLVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~wgrr 268 (320)
||.+++||..-..+++|+-|.+++
T Consensus 22 LifA~vLfi~GI~iilS~kcrCk~ 45 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSGKCKCRR 45 (67)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCcccccC
Confidence 455566777777788888777643
No 14
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=28.14 E-value=1.2e+02 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=22.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020862 241 NPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 241 naiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
++...+++++++.+-+.+=.|.-...++.+..+.+..|..
T Consensus 134 ~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~ 173 (1028)
T 2zxe_A 134 NLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQ 173 (1028)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 4444444444444444455566666677777776655543
No 15
>3rlf_F Maltose transport system permease protein MALF; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 2r6g_F* 3puv_F* 3pux_F* 3puy_F* 3puz_F* 3pv0_F* 3puw_F* 3fh6_F
Probab=25.64 E-value=1e+02 Score=30.05 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHH
Q 020862 215 KPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAI 258 (320)
Q Consensus 215 k~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Vaal 258 (320)
|.+-|+++.++..-.+-+++.+.+..+|.+.++.+++.+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (514)
T 3rlf_F 13 DALKWSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYI 56 (514)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHeEE
Confidence 45678888888888888999999999998887777666554444
No 16
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=24.95 E-value=74 Score=22.10 Aligned_cols=9 Identities=22% Similarity=0.774 Sum_probs=5.6
Q ss_pred HHHHHHHHh
Q 020862 255 IAAIFIWNT 263 (320)
Q Consensus 255 VaalfiWN~ 263 (320)
+..+.+|.|
T Consensus 26 li~~~LwK~ 34 (42)
T 2k1a_A 26 ILVLAMWKV 34 (42)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 345567876
No 17
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.15 E-value=56 Score=25.46 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 020862 245 LIVVLVLFAVIAAIFIWNTCWGR 267 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~wgr 267 (320)
||.+++||..-..+++|+-|.++
T Consensus 21 LifA~vLfi~GI~iilS~KckCk 43 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCRCK 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccccC
Confidence 45566777777788888877663
No 18
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=23.69 E-value=2.8e+02 Score=24.94 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=9.5
Q ss_pred cEEEEeEE---EEeeecCc
Q 020862 289 QFVKVTGV---CNSTYSNR 304 (320)
Q Consensus 289 QyVKVTGV---VTC~~~~~ 304 (320)
--|||+|- =+-.|.+.
T Consensus 109 ltIkViG~QW~W~yeY~d~ 127 (262)
T 2gsm_B 109 VTVKVTGYQWYWGYEYPDE 127 (262)
T ss_dssp EEEEEEEETTEEEEEETTT
T ss_pred ceEEEEEEeccEEEEeCCC
Confidence 36999993 23445543
No 19
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=23.52 E-value=23 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=17.5
Q ss_pred ccccCCCCcEEEEeEEEEeeecCc
Q 020862 281 DLRTAKSGQFVKVTGVCNSTYSNR 304 (320)
Q Consensus 281 dLR~AkdGQyVKVTGVVTC~~~~~ 304 (320)
+....+.|+||||.|.|..-..++
T Consensus 76 ~~~~~~~g~yVrV~G~l~~f~g~~ 99 (132)
T 3kdf_D 76 ENTVVPPETYVKVAGHLRSFQNKK 99 (132)
T ss_dssp --CCCCTTCEEEEEEEEEEETTEE
T ss_pred ccccccCCCEEEEEEEEEeECCEE
Confidence 356678999999999999844333
No 20
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=23.15 E-value=1.8e+02 Score=25.74 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhcCCCcccccCCCCcEEEEeEE
Q 020862 243 ILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISCHPDTDLRTAKSGQFVKVTGV 296 (320)
Q Consensus 243 iLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~ryPDadLR~AkdGQyVKVTGV 296 (320)
--|++.+++.+++++|-+.++.-- -.|+.=++. |--+.|++|+|.|+
T Consensus 93 ~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~-------~pf~vGD~I~i~~~ 140 (285)
T 3udc_A 93 TSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFE-------DQFSVGDYVTINGI 140 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT-------TSCCTTCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CCccCCCEEEECCE
Confidence 345566666777777766665433 223333332 35689999998653
No 21
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=22.77 E-value=45 Score=26.05 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcch
Q 020862 245 LIVVLVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~wgrr 268 (320)
||.+++||..-..+++|+-|.+++
T Consensus 24 LifA~vLfi~GI~iilS~kcrCk~ 47 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRCKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC-----
T ss_pred chhHHHHHHHHHHHHHcCccccCC
Confidence 445566777777888899888754
No 22
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=22.71 E-value=27 Score=31.17 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.3
Q ss_pred ccCCCCcEEEEeEEEEeee
Q 020862 283 RTAKSGQFVKVTGVCNSTY 301 (320)
Q Consensus 283 R~AkdGQyVKVTGVVTC~~ 301 (320)
+.++.|+.|.|||++.+.+
T Consensus 210 d~~~PGDrV~vtGI~~~~~ 228 (279)
T 1ltl_A 210 DTLTPGDIVRVTGTLRTVR 228 (279)
T ss_dssp TCCCTTCEEEEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEEEee
Confidence 4689999999999999987
No 23
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=22.30 E-value=64 Score=33.80 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCC
Q 020862 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPD 279 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPD 279 (320)
++..+++++++.+-+++=.|.-...++++..+-+..|.
T Consensus 140 ~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~ 177 (1034)
T 3ixz_A 140 LYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQ 177 (1034)
T ss_pred hhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34444444444444445566666667777776665553
No 24
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=22.04 E-value=44 Score=26.24 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=27.5
Q ss_pred hhcchhhhhhhh----cCCCc--ccccC--CCCcEEEEeEEEEeeec
Q 020862 264 CWGRKAITDFIS----CHPDT--DLRTA--KSGQFVKVTGVCNSTYS 302 (320)
Q Consensus 264 ~wgrr~l~~Fv~----ryPDa--dLR~A--kdGQyVKVTGVVTC~~~ 302 (320)
..|+.++..|++ .|||. |++.. .+|+.|-+.-++++|+.
T Consensus 57 ~~G~e~i~~~~~~~~~~~~~~~~~~~~~~~~~gd~v~~~~~~~gt~~ 103 (150)
T 3f8h_A 57 RVGKEKFAAFCAHMSHCYKEELTDMVIFATPDATRAAAEYTVNGTYL 103 (150)
T ss_dssp EESHHHHHHHHHHHHHHEEEEEEEEEEEECTTSSEEEEEEEEEEEEC
T ss_pred eeCHHHHHHHHHHHHHhCCccccceEEEEecCCCEEEEEEEEEEEEe
Confidence 456777777777 67773 33221 68999999999999865
No 25
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=21.39 E-value=83 Score=24.12 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-chhhhhhhhcCC
Q 020862 246 IVVLVLFAVIAAIFIWNTCWG-RKAITDFISCHP 278 (320)
Q Consensus 246 ivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~ryP 278 (320)
++++++...+++++=|=+++- +++-.+|-+.|-
T Consensus 22 ~~a~~lsl~~~~~~k~~v~~pRK~aYadFYknYD 55 (73)
T 1v54_I 22 VGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYD 55 (73)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 334444444444444444554 778899999983
No 26
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=21.37 E-value=41 Score=28.94 Aligned_cols=25 Identities=20% Similarity=0.557 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcc
Q 020862 216 PVLWLVILIFVMGFIAGGFILGAVH 240 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVh 240 (320)
.++|+++++...||++++.+|.-++
T Consensus 52 ~ylYIL~vmgffgff~~GImLsYiR 76 (138)
T 2k21_A 52 EALYVLMVLGFFGFFTLGIMLSYIR 76 (138)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHhH
Confidence 3589999999999999998888765
No 27
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=21.34 E-value=22 Score=30.14 Aligned_cols=32 Identities=25% Similarity=0.158 Sum_probs=24.4
Q ss_pred CCCCcEEEEeEEEEeeecCcchhhhHHHHhhh
Q 020862 285 AKSGQFVKVTGVCNSTYSNRNFFVFYVLLLHS 316 (320)
Q Consensus 285 AkdGQyVKVTGVVTC~~~~~~~~~~~~~~~~~ 316 (320)
...|.||+|.|.|.+-...|..-++.+..+.+
T Consensus 97 l~~G~~VrV~G~v~~fr~~rqI~~~~i~~v~d 128 (159)
T 3kf6_A 97 MSPGNVVCVFGKINSFRSEVELIAQSFEELRD 128 (159)
T ss_dssp CCTTCEEEEEEEEECSSSSCEEEEEEEEEECS
T ss_pred CCCCCEEEEEEEEEeeCCEEEEEEEEEEECCC
Confidence 48899999999999988888775555444433
No 28
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.15 E-value=1.4e+02 Score=21.94 Aligned_cols=9 Identities=11% Similarity=0.685 Sum_probs=5.9
Q ss_pred HHHHHHHHh
Q 020862 255 IAAIFIWNT 263 (320)
Q Consensus 255 VaalfiWN~ 263 (320)
+..+.+|.|
T Consensus 25 Lii~~LwK~ 33 (54)
T 2l8s_A 25 LLILALWKI 33 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 445667877
No 29
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=20.20 E-value=1.1e+02 Score=27.81 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=18.1
Q ss_pred ccccccccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhh
Q 020862 192 IAQNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGA 238 (320)
Q Consensus 192 ~~~n~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~A 238 (320)
.-.||+|..|..+|-.+.- +|+-+...+|.+ -.|++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~s-------~Wlw~~~a~m~~--~vF~~l~ 51 (274)
T 2jaf_A 14 VLGAQSAAAVRENALLSSS-------LWVNVALAGIAI--LVFVYMG 51 (274)
T ss_dssp --------CCCCCHHHHHH-------HHHHHHHHHHHH--HHHHHHT
T ss_pred ccchHHHHhhCcCcccccc-------HHHHHHHHHHHH--HHHHHHH
Confidence 3458999888777644433 777666666666 5555543
Done!