Query 020862
Match_columns 320
No_of_seqs 46 out of 48
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 09:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ogya1 b.52.2.2 (A:682-801) P 42.3 5.2 0.00038 29.5 1.9 22 279-300 45-69 (120)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 37.2 12 0.00086 26.2 3.1 19 245-263 6-24 (158)
3 d1ltla_ b.40.4.11 (A:) DNA rep 35.0 14 0.001 30.1 3.6 20 284-303 203-222 (239)
4 d2pi2a1 b.40.4.3 (A:44-171) Re 32.4 7 0.00051 29.3 1.2 29 281-309 73-101 (128)
5 d1y5ia1 b.52.2.2 (A:1075-1244) 30.0 11 0.00078 30.2 2.0 23 279-301 49-74 (170)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 28.7 37 0.0027 28.6 5.4 34 219-252 5-38 (248)
7 d1h0ha1 b.52.2.2 (A:813-977) T 28.5 12 0.00087 28.9 2.0 28 272-299 68-99 (165)
8 d1eu1a1 b.52.2.2 (A:626-780) D 27.2 12 0.00086 28.4 1.7 27 274-300 44-74 (155)
9 d1gy7a_ d.17.4.2 (A:) Nuclear 26.0 9.1 0.00066 28.2 0.8 45 259-303 34-91 (121)
10 d1noaa_ b.1.7.1 (A:) Neocarzin 25.8 16 0.0012 28.5 2.3 15 278-295 9-23 (113)
11 d2iv2x1 b.52.2.2 (X:565-715) F 24.6 13 0.00097 28.5 1.5 28 273-300 43-74 (151)
12 d1g8ka1 b.52.2.2 (A:683-825) A 24.4 12 0.00084 28.6 1.1 34 261-294 25-67 (143)
13 d1vlfm1 b.52.2.2 (M:729-875) T 22.1 14 0.001 27.6 1.2 22 279-300 50-74 (147)
14 d2fug31 b.52.2.2 (3:686-767) N 21.8 23 0.0016 25.1 2.2 33 268-300 25-61 (82)
15 d1s1qa_ d.20.1.2 (A:) Tumor su 21.2 28 0.0021 26.4 2.9 41 267-307 20-67 (141)
16 d1kqfa1 b.52.2.2 (A:851-1015) 20.9 13 0.00092 28.4 0.7 22 273-294 69-91 (165)
No 1
>d1ogya1 b.52.2.2 (A:682-801) Periplasmic nitrate reductase alpha chain, NapA {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=42.31 E-value=5.2 Score=29.54 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=17.3
Q ss_pred CcccccCCCCcEEEEe---EEEEee
Q 020862 279 DTDLRTAKSGQFVKVT---GVCNST 300 (320)
Q Consensus 279 DadLR~AkdGQyVKVT---GVVTC~ 300 (320)
||+-+..+|||.|+|+ |.|.|.
T Consensus 45 dA~~~Gi~dGd~V~v~s~~G~i~~~ 69 (120)
T d1ogya1 45 DARSRGLNRGSEVRVISRRGEIRTR 69 (120)
T ss_dssp HHHHTTCCTTCEEEEECSSCEEEEE
T ss_pred HHHHhCCCCCCEEEEECCCCcEEEE
Confidence 4466789999999999 876643
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=37.20 E-value=12 Score=26.23 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020862 245 LIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~ 263 (320)
|+||++++++++++.+.+.
T Consensus 6 LlVViaIIgILaaia~P~~ 24 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777654
No 3
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.03 E-value=14 Score=30.11 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.0
Q ss_pred cCCCCcEEEEeEEEEeeecC
Q 020862 284 TAKSGQFVKVTGVCNSTYSN 303 (320)
Q Consensus 284 ~AkdGQyVKVTGVVTC~~~~ 303 (320)
.++.|+.|+|||++.+....
T Consensus 203 ~~~pGd~V~i~GI~~~~~~~ 222 (239)
T d1ltla_ 203 TLTPGDIVRVTGTLRTVRDE 222 (239)
T ss_dssp CCCTTCEEEEEEEEEEEEET
T ss_pred ccCCCCEEEEEEEEEEeecC
Confidence 48999999999999887653
No 4
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.36 E-value=7 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.6
Q ss_pred ccccCCCCcEEEEeEEEEeeecCcchhhh
Q 020862 281 DLRTAKSGQFVKVTGVCNSTYSNRNFFVF 309 (320)
Q Consensus 281 dLR~AkdGQyVKVTGVVTC~~~~~~~~~~ 309 (320)
+....++|.||||.|-+.+-...|..-+|
T Consensus 73 ~~~~i~~g~yVrV~G~lk~f~~~~~i~~~ 101 (128)
T d2pi2a1 73 ENTVVPPETYVKVAGHLRSFQNKKSLVAF 101 (128)
T ss_dssp -CCCCCTTCEEEEEEEEEEETTEEEEEEE
T ss_pred ccccccCCCEEEEEEEEEeeCCeEEEEEE
Confidence 44567899999999999976555544333
No 5
>d1y5ia1 b.52.2.2 (A:1075-1244) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]}
Probab=29.97 E-value=11 Score=30.22 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=19.5
Q ss_pred CcccccCCCCcEEEEe---EEEEeee
Q 020862 279 DTDLRTAKSGQFVKVT---GVCNSTY 301 (320)
Q Consensus 279 DadLR~AkdGQyVKVT---GVVTC~~ 301 (320)
||+-++.+||+.|+|+ |.|.|..
T Consensus 49 dA~~~GI~dGD~V~V~n~~G~i~~~a 74 (170)
T d1y5ia1 49 DAKDLGIADNDWIEVFNSNGALTARA 74 (170)
T ss_dssp HHHHHTCCTTCEEEEEETTEEEEEEE
T ss_pred HHHHcCCCCCCEEEEEcCCEEEEEEE
Confidence 5677889999999999 8888763
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=28.67 E-value=37 Score=28.60 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHH
Q 020862 219 WLVILIFVMGFIAGGFILGAVHNPILLIVVLVLF 252 (320)
Q Consensus 219 W~villf~mGliaG~FiL~AVhnaiLLivV~~lf 252 (320)
|+++.++..=.+-.+++|-+-.+|+++++++++.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 38 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITTLILS 38 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 4455444444455556666666666655444443
No 7
>d1h0ha1 b.52.2.2 (A:813-977) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=28.45 E-value=12 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=19.8
Q ss_pred hhhhcCC-CcccccCCCCcEEEEe---EEEEe
Q 020862 272 DFISCHP-DTDLRTAKSGQFVKVT---GVCNS 299 (320)
Q Consensus 272 ~Fv~ryP-DadLR~AkdGQyVKVT---GVVTC 299 (320)
.|+.=.| ||+-++.+||+.|+|+ |-+.+
T Consensus 68 ~~v~i~p~dA~~lGi~dGD~V~V~s~~G~~~~ 99 (165)
T d1h0ha1 68 MFCEMSEELATLRGIKNGDKVILESVRGKLWA 99 (165)
T ss_dssp CEEEECHHHHHHHTCCTTCEEEEEETTEEEEE
T ss_pred eEEEECHHHHHHcCCCcCCEEEEECCCcEEEE
Confidence 3444455 4577889999999998 65443
No 8
>d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=27.20 E-value=12 Score=28.36 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=18.6
Q ss_pred hhcCC-CcccccCCCCcEEEE---eEEEEee
Q 020862 274 ISCHP-DTDLRTAKSGQFVKV---TGVCNST 300 (320)
Q Consensus 274 v~ryP-DadLR~AkdGQyVKV---TGVVTC~ 300 (320)
|.=.| ||+-+..+||+.|+| .|.|+|.
T Consensus 44 v~Inp~dA~~~GI~dGD~V~V~n~~G~~~~~ 74 (155)
T d1eu1a1 44 CLINPADAAARGIADGDVLRVFNDRGQILVG 74 (155)
T ss_dssp EEECHHHHHTTTCCTTCEEEEECSSCEEEEE
T ss_pred EEECHHHHHHcCCCCcCEEEEeecCcccEEE
Confidence 33344 568889999999999 3444443
No 9
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.03 E-value=9.1 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHH--hhhcchhhhhhhhcCC--Cc--cccc------CCCC-cEEEEeEEEEeeecC
Q 020862 259 FIWN--TCWGRKAITDFISCHP--DT--DLRT------AKSG-QFVKVTGVCNSTYSN 303 (320)
Q Consensus 259 fiWN--~~wgrr~l~~Fv~ryP--Da--dLR~------AkdG-QyVKVTGVVTC~~~~ 303 (320)
++|| .+.|+.+|..++.+.| +. ++.+ ..+| =+|-|+|.++|.-.+
T Consensus 34 l~~~g~~~~G~~~I~~~l~~lp~~~~~~~i~~~D~Qp~~~~~~ili~V~G~~~~~~~~ 91 (121)
T d1gy7a_ 34 LTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQ 91 (121)
T ss_dssp EEETTEEEESHHHHHHHHHHSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTCS
T ss_pred EEECCeEecCHHHHHHHHHhCCCcccEEEEeeEeeEEccCCCeEEEEEEEEEEECCCC
Confidence 3565 5778999999999999 32 2222 2334 688999999985443
No 10
>d1noaa_ b.1.7.1 (A:) Neocarzinostatin {Streptomyces carzinostaticus [TaxId: 1897]}
Probab=25.85 E-value=16 Score=28.54 Aligned_cols=15 Identities=47% Similarity=0.849 Sum_probs=11.9
Q ss_pred CCcccccCCCCcEEEEeE
Q 020862 278 PDTDLRTAKSGQFVKVTG 295 (320)
Q Consensus 278 PDadLR~AkdGQyVKVTG 295 (320)
|.+.| -|||-|||||
T Consensus 9 PstGL---sDGqtV~Vtg 23 (113)
T d1noaa_ 9 PSSGL---SDGTVVKVAG 23 (113)
T ss_dssp SCSSC---CTTCEEEEEE
T ss_pred CCccc---cCCCEEEEEe
Confidence 44444 8999999998
No 11
>d2iv2x1 b.52.2.2 (X:565-715) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}
Probab=24.58 E-value=13 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=19.1
Q ss_pred hhhcCC-CcccccCCCCcEEEEe---EEEEee
Q 020862 273 FISCHP-DTDLRTAKSGQFVKVT---GVCNST 300 (320)
Q Consensus 273 Fv~ryP-DadLR~AkdGQyVKVT---GVVTC~ 300 (320)
|+.=+| ||+-++.+||+.|+|+ |.|.|.
T Consensus 43 ~v~inP~DA~~lGI~dGd~V~V~s~~G~v~~~ 74 (151)
T d2iv2x1 43 YAQINTEDAKRLGIEDEALVWVHSRKGKIITR 74 (151)
T ss_dssp EEEEEHHHHHHHTCCTTCEEEEECSSCEEEEE
T ss_pred EEEECHHHHHHcCCCCCCEEEEECCCCcEEEE
Confidence 444444 3466789999999998 666554
No 12
>d1g8ka1 b.52.2.2 (A:683-825) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}
Probab=24.36 E-value=12 Score=28.62 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=22.5
Q ss_pred HHhhhcchhhhhhhhcCC---------CcccccCCCCcEEEEe
Q 020862 261 WNTCWGRKAITDFISCHP---------DTDLRTAKSGQFVKVT 294 (320)
Q Consensus 261 WN~~wgrr~l~~Fv~ryP---------DadLR~AkdGQyVKVT 294 (320)
||+.+..+-+....+++| ||+-++.+||+.|+|.
T Consensus 25 ~hs~~~t~~~~~l~~~~p~~~v~Inp~DA~~lGi~~Gd~V~v~ 67 (143)
T d1g8ka1 25 WQTAYHDQYNSLMQERYPMAYIEMNPDDCKQLDVTGGDIVEVY 67 (143)
T ss_dssp CTTCTTGGGCHHHHHHCSSCEEEECHHHHHHTTCCTTEEEEEE
T ss_pred eccccccccHHHHHhhCcCcccccCHHHHHHhCCCCCCEEEEE
Confidence 666554444444445555 3466779999999985
No 13
>d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}
Probab=22.08 E-value=14 Score=27.63 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.2
Q ss_pred CcccccCCCCcEEEEe---EEEEee
Q 020862 279 DTDLRTAKSGQFVKVT---GVCNST 300 (320)
Q Consensus 279 DadLR~AkdGQyVKVT---GVVTC~ 300 (320)
||+-+..+||+.|+|+ |.|.|.
T Consensus 50 dA~~~GI~dGD~V~V~n~~G~i~~~ 74 (147)
T d1vlfm1 50 DAEARGIKNGDLIRAYNDRGSVILA 74 (147)
T ss_dssp HHHTTTCCTTCEEEEEETTEEEEEE
T ss_pred HHHHcCCCCCCEEEEECCCcEEEEE
Confidence 5788899999999997 555443
No 14
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=21.78 E-value=23 Score=25.13 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=22.6
Q ss_pred hhhhhhhhcCC-CcccccCCCCcEEEEe---EEEEee
Q 020862 268 KAITDFISCHP-DTDLRTAKSGQFVKVT---GVCNST 300 (320)
Q Consensus 268 r~l~~Fv~ryP-DadLR~AkdGQyVKVT---GVVTC~ 300 (320)
+.-+-|+.=.| ||+-++.+||++|+|+ |.|.|.
T Consensus 25 ~~~ep~v~i~P~dA~~lGi~~Gd~V~V~s~~G~v~~~ 61 (82)
T d2fug31 25 EAARAELWAHPETARAEALPEGAQVAVETPFGRVEAR 61 (82)
T ss_dssp HHHCC--CCCSSSCSTTTCCTTCEEEEEETTEEEEEE
T ss_pred cCCCCEEEECHHHHHHcCCCcCCEEEEEcCCcEEEEE
Confidence 34556777777 4578889999999996 555554
No 15
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=28 Score=26.36 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=33.7
Q ss_pred chhhhhhhhcCCCc----ccccCCCC---cEEEEeEEEEeeecCcchh
Q 020862 267 RKAITDFISCHPDT----DLRTAKSG---QFVKVTGVCNSTYSNRNFF 307 (320)
Q Consensus 267 rr~l~~Fv~ryPDa----dLR~AkdG---QyVKVTGVVTC~~~~~~~~ 307 (320)
+|.+...++.|||- +..+-.|| +++.++|-+-+.|.|..|.
T Consensus 20 ~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~ 67 (141)
T d1s1qa_ 20 VRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYN 67 (141)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEE
Confidence 67888899999864 44567888 7889999999999998764
No 16
>d1kqfa1 b.52.2.2 (A:851-1015) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}
Probab=20.86 E-value=13 Score=28.40 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=16.2
Q ss_pred hhhcCC-CcccccCCCCcEEEEe
Q 020862 273 FISCHP-DTDLRTAKSGQFVKVT 294 (320)
Q Consensus 273 Fv~ryP-DadLR~AkdGQyVKVT 294 (320)
||.=.| ||+-++.+|||+|+|+
T Consensus 69 ~v~inp~dA~~lGI~dGD~V~v~ 91 (165)
T d1kqfa1 69 FVEISETLAAAKGINNGDRVTVS 91 (165)
T ss_dssp EEEECHHHHHHHTCCTTCEEEEE
T ss_pred EEEEcHhHHHHcCCCccceeEEe
Confidence 344444 4577889999999997
Done!