Query 020864
Match_columns 320
No_of_seqs 155 out of 205
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 05:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07890 Rrp15p: Rrp15p; Inte 100.0 1.8E-35 4E-40 250.8 12.6 123 129-251 1-130 (130)
2 KOG2974 Uncharacterized conser 99.9 1.1E-22 2.3E-27 188.5 5.4 169 129-301 41-230 (241)
3 KOG2974 Uncharacterized conser 97.5 9E-05 2E-09 69.9 3.4 104 146-251 115-234 (241)
4 PF09026 CENP-B_dimeris: Centr 75.2 1.6 3.4E-05 36.9 1.4 8 130-137 46-53 (101)
5 PF04931 DNA_pol_phi: DNA poly 61.9 9.1 0.0002 41.5 4.1 15 128-142 702-716 (784)
6 PF10446 DUF2457: Protein of u 41.1 20 0.00043 37.4 2.5 7 185-191 221-227 (458)
7 KOG4434 Molecular chaperone SE 37.2 63 0.0014 33.6 5.2 41 28-68 302-347 (520)
8 PF06524 NOA36: NOA36 protein; 37.2 26 0.00056 34.6 2.5 8 46-53 230-237 (314)
9 PF03406 Phage_fiber_2: Phage 30.3 6 0.00013 28.5 -2.3 14 204-217 2-15 (44)
10 KOG2002 TPR-containing nuclear 28.4 71 0.0015 36.4 4.3 8 56-63 951-958 (1018)
11 PF04931 DNA_pol_phi: DNA poly 23.5 60 0.0013 35.4 2.6 14 130-143 700-713 (784)
12 COG5406 Nucleosome binding fac 20.3 70 0.0015 35.4 2.3 14 60-73 927-940 (1001)
No 1
>PF07890 Rrp15p: Rrp15p; InterPro: IPR012459 This family contains sequences from a number of hypothetical eukaryotic proteins of unknown function. The region featured is approximately 150 amino acids long.
Probab=100.00 E-value=1.8e-35 Score=250.84 Aligned_cols=123 Identities=44% Similarity=0.535 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccccccchh--hhhhHHHHHHHhhhHHHHHHHHHHHhcCCCCCCc-ccchhhhhhHHHH
Q 020864 129 AFKMAFKSILRKSVADDALGPVLSAHKKLV--GEKLAEEEAERKVKGEAKKERHLAAEKGHVKPAN-YLDSHEKFLIGVA 205 (320)
Q Consensus 129 aFA~AmsKIL~kk~p~~~~~PILsksKk~~--~~kl~eeklE~KaKr~~k~eKr~~~ekgrvkP~~-~~~e~Er~LrkiA 205 (320)
|||+||++||++++|.+..+|||++++++. .++++++++|.++++.++.+++++.++|||+|++ ...++||+||+||
T Consensus 1 g~a~a~~kIL~~~~~~~~~~pILsk~kk~~~~~~~~~~ek~e~k~~~~~~~ekk~~~~~~rvkp~~~~~~e~Er~LrkiA 80 (130)
T PF07890_consen 1 GFADAMSKILNKKLPKDKRTPILSKSKKLAKAKKKKKEEKLERKAKRELKKEKKEWEEKGRVKPDIPTDDERERRLRKIA 80 (130)
T ss_pred ChHHHHHHHHcccCCCCCCcceeeCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCCcccHHHHHHHHHHH
Confidence 599999999999999876669999999986 3778899999999999999999999999999988 7889999999999
Q ss_pred hhhHHHHhHHHHHHHHhhh----cCCCCchhhHHHHhhhcHHHHHHHhcC
Q 020864 206 TKGVVKLFNAVNKAQHAQK----GLNPSRSKDEKLLKKRRKETFFSELGK 251 (320)
Q Consensus 206 trGVVqLFNAV~k~Q~~~k----~~~~s~~KkeKvl~~vSK~~FLd~L~~ 251 (320)
|||||||||||++||++.. +.++..++++++++++||..|||+|+.
T Consensus 81 trGVVqLFNAV~~~Q~~~~~~~~~~~~~~~~~~~~~~~~sK~~FLd~Lk~ 130 (130)
T PF07890_consen 81 TRGVVQLFNAVRKAQKEAEKKLEEAGKLERKREKVLKSLSKESFLDMLKS 130 (130)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhcCHHHHHHHHhC
Confidence 9999999999999999852 233456778899999999999999963
No 2
>KOG2974 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=1.1e-22 Score=188.46 Aligned_cols=169 Identities=21% Similarity=0.230 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCcccccccchhh-hhhHHHHHHHhhhHHHHHHHHHHHhcCCCCC-Ccc-----cchhhhhh
Q 020864 129 AFKMAFKSILRKSVADDALGPVLSAHKKLVG-EKLAEEEAERKVKGEAKKERHLAAEKGHVKP-ANY-----LDSHEKFL 201 (320)
Q Consensus 129 aFA~AmsKIL~kk~p~~~~~PILsksKk~~~-~kl~eeklE~KaKr~~k~eKr~~~ekgrvkP-~~~-----~~e~Er~L 201 (320)
+|++|+.+.|++..|.+.+..+++.+++... ..+.++.+..+..+..+-++ .....+.| .++ ..++||.|
T Consensus 41 g~~da~~k~~~~~~~es~k~~~~~~~kkee~~d~~~~d~~~kk~~~~~~i~~---d~~~~~~~~dvt~~~s~d~e~er~l 117 (241)
T KOG2974|consen 41 GWADASEKVFNKDDPESSKIILKALNKKEEFDDSLSSDDEIKKKVKEKRIAD---DDAKILNQADVTQTDSHDKETERNL 117 (241)
T ss_pred cccchhhhhhccCCchhhHHHHHHHhhhhhhhhhcchhhhhhhhhhhhhhHH---HhhccchhhhhhhhhhhhhhhhhHh
Confidence 4899999999999887655455555554321 12222222222222222222 22334444 332 46899999
Q ss_pred HHHHhhhHHHHhHHHHHHHHhhh------cCCCCchhhHHHHhhhcHHHHHHHhcC---CC--C-CcccccCCCC-CC-C
Q 020864 202 IGVATKGVVKLFNAVNKAQHAQK------GLNPSRSKDEKLLKKRRKETFFSELGK---TS--V-STADASAKGP-NS-S 267 (320)
Q Consensus 202 rkiAtrGVVqLFNAV~k~Q~~~k------~~~~s~~KkeKvl~~vSK~~FLd~L~~---~~--~-~~a~~~~K~~-~~-~ 267 (320)
++|||||||||||||+++|+.++ .+..+..++..+|+.++++.|++.++. .. + ....+..++. +. .
T Consensus 118 ~~vAtKgVvqlfNAvkk~qK~~k~~~~~Kea~~~k~Rr~~~i~~~s~k~~~d~~r~~lr~~~r~~~q~~~~~kk~~a~q~ 197 (241)
T KOG2974|consen 118 RRVATKGVVQLFNAVKKDQKARKRRERLKEAMVGKVRRVVAINAESGKDRFDVKRSLLRGALRKVVQLANAVKKEVALQD 197 (241)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHhhhhhhhHHhhhhHHHHhhhhhhhhhhhhhhhhhhhhcc
Confidence 99999999999999999999754 344556667779999999999999974 21 1 1112222211 11 2
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCc
Q 020864 268 GTADGEGPAWAPLRDNYMLTSSKLKDWDKMPDST 301 (320)
Q Consensus 268 ~~~~~e~~~WsVLrDDFMmg~aKmKDWDKe~d~~ 301 (320)
....+++|+|..||++||++ .+||+||+++..+
T Consensus 198 ~~~ee~~~~g~~~rn~~~~~-~kikewdKe~~~d 230 (241)
T KOG2974|consen 198 DDNEEEGSGGRELRNDFEKN-QKIKEWDKESFLD 230 (241)
T ss_pred ccccccccchhhhhhHHhhh-hhhcccchhhccc
Confidence 23457889999999999998 8999999999988
No 3
>KOG2974 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=9e-05 Score=69.92 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=58.6
Q ss_pred CCCcccccccchhhhhhHHHHHHHhhhHHHHHHHHHHHhcCC---CCCCcc---cchhhhhhHHHHhhhHHHHhHHHH-H
Q 020864 146 ALGPVLSAHKKLVGEKLAEEEAERKVKGEAKKERHLAAEKGH---VKPANY---LDSHEKFLIGVATKGVVKLFNAVN-K 218 (320)
Q Consensus 146 ~~~PILsksKk~~~~kl~eeklE~KaKr~~k~eKr~~~ekgr---vkP~~~---~~e~Er~LrkiAtrGVVqLFNAV~-k 218 (320)
+.-|+.+ +|.. .+.-..++.++|++....+.|..+.-+-| +.|... .....|.|+++|-|+|++|||+|+ .
T Consensus 115 r~l~~vA-tKgV-vqlfNAvkk~qK~~k~~~~~Kea~~~k~Rr~~~i~~~s~k~~~d~~r~~lr~~~r~~~q~~~~~kk~ 192 (241)
T KOG2974|consen 115 RNLRRVA-TKGV-VQLFNAVKKDQKARKRRERLKEAMVGKVRRVVAINAESGKDRFDVKRSLLRGALRKVVQLANAVKKE 192 (241)
T ss_pred hHhHHHH-hHHH-HHHHHHHHHHHHHHhHHHHHHHhhhhhhHHHHHhhhhhhhHHhhhhHHHHhhhhhhhhhhhhhhhhh
Confidence 3334444 3332 34445566666666533333333321111 223332 246889989999999999999999 3
Q ss_pred HHHhh---hcCC-CCchhh-----HHHHhhhcHHHHHHHhcC
Q 020864 219 AQHAQ---KGLN-PSRSKD-----EKLLKKRRKETFFSELGK 251 (320)
Q Consensus 219 ~Q~~~---k~~~-~s~~Kk-----eKvl~~vSK~~FLd~L~~ 251 (320)
.|.+. .... +....+ ...|+.++|++||++...
T Consensus 193 ~a~q~~~~ee~~~~g~~~rn~~~~~~kikewdKe~~~d~~~~ 234 (241)
T KOG2974|consen 193 VALQDDDNEEEGSGGRELRNDFEKNQKIKEWDKESFLDLGKS 234 (241)
T ss_pred hhhccccccccccchhhhhhHHhhhhhhcccchhhccccccc
Confidence 33332 1111 111121 135789999999999864
No 4
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=75.16 E-value=1.6 Score=36.88 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=5.3
Q ss_pred HHHHHHHH
Q 020864 130 FKMAFKSI 137 (320)
Q Consensus 130 FA~AmsKI 137 (320)
|+.||+-|
T Consensus 46 fgea~~~~ 53 (101)
T PF09026_consen 46 FGEAMAYF 53 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777655
No 5
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=61.91 E-value=9.1 Score=41.52 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhcCC
Q 020864 128 RAFKMAFKSILRKSV 142 (320)
Q Consensus 128 ~aFA~AmsKIL~kk~ 142 (320)
.+|..++.+.|+...
T Consensus 702 ~~~~~~l~~aL~~~~ 716 (784)
T PF04931_consen 702 EEFRSALAKALGDAD 716 (784)
T ss_pred HHHHHHHHHHhcccc
Confidence 469999999998753
No 6
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=41.11 E-value=20 Score=37.39 Aligned_cols=7 Identities=29% Similarity=0.150 Sum_probs=3.3
Q ss_pred cCCCCCC
Q 020864 185 KGHVKPA 191 (320)
Q Consensus 185 kgrvkP~ 191 (320)
+.+++|.
T Consensus 221 K~~~iPQ 227 (458)
T PF10446_consen 221 KHIPIPQ 227 (458)
T ss_pred CCCCCCC
Confidence 3455553
No 7
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=37.25 E-value=63 Score=33.60 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=26.7
Q ss_pred cccccCCCCCC--cccc---CCHHHHHHHHHHHhhhCCCCCcccCC
Q 020864 28 KKKLKVMPGSG--ERVK---INNKMRKLFRKRARAYNSDDDEDESA 68 (320)
Q Consensus 28 ~k~~~~~~g~k--~~~k---~~~~~~kl~~k~~~~y~s~d~e~~~~ 68 (320)
+.+++|.+|++ ..++ -+....|.+.--|.+-|||+++++..
T Consensus 302 k~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n 347 (520)
T KOG4434|consen 302 KQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETN 347 (520)
T ss_pred CcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhc
Confidence 33444555544 3344 27778888888999988887765544
No 8
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=37.22 E-value=26 Score=34.64 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020864 46 KMRKLFRK 53 (320)
Q Consensus 46 ~~~kl~~k 53 (320)
+-++.-|.
T Consensus 230 R~hkyGRQ 237 (314)
T PF06524_consen 230 RSHKYGRQ 237 (314)
T ss_pred ecchhccc
Confidence 34454443
No 9
>PF03406 Phage_fiber_2: Phage tail fibre repeat; InterPro: IPR005068 This entry is represented by Bacteriophage lambda, Stf, side tail fibre-repeat-2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This repeat is found in the tail fibres of phage, for example protein K Q37842 from SWISSPROT [] but bacterial homologues have also been identified. The repeats are about 40 residues long.
Probab=30.25 E-value=6 Score=28.54 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.0
Q ss_pred HHhhhHHHHhHHHH
Q 020864 204 VATKGVVKLFNAVN 217 (320)
Q Consensus 204 iAtrGVVqLFNAV~ 217 (320)
+.++|+|||-|+|.
T Consensus 2 ~~~kG~vqLs~~~~ 15 (44)
T PF03406_consen 2 TTQKGIVQLSSSTN 15 (44)
T ss_pred ccceeEEEeecccc
Confidence 46899999999984
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=28.38 E-value=71 Score=36.44 Aligned_cols=8 Identities=25% Similarity=0.534 Sum_probs=3.9
Q ss_pred hhhCCCCC
Q 020864 56 RAYNSDDD 63 (320)
Q Consensus 56 ~~y~s~d~ 63 (320)
+++||.++
T Consensus 951 k~~~~t~e 958 (1018)
T KOG2002|consen 951 KAFISTSE 958 (1018)
T ss_pred hhhhcccc
Confidence 34555554
No 11
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=23.48 E-value=60 Score=35.39 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcCCC
Q 020864 130 FKMAFKSILRKSVA 143 (320)
Q Consensus 130 FA~AmsKIL~kk~p 143 (320)
.-.++..-|.+.+.
T Consensus 700 ~d~~~~~~l~~aL~ 713 (784)
T PF04931_consen 700 VDEEFRSALAKALG 713 (784)
T ss_pred hHHHHHHHHHHHhc
Confidence 44455555555444
No 12
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=20.35 E-value=70 Score=35.44 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=7.4
Q ss_pred CCCCcccCCCCccC
Q 020864 60 SDDDEDESAPEFRG 73 (320)
Q Consensus 60 s~d~e~~~~~~~~~ 73 (320)
|||+-||+.+++++
T Consensus 927 sddE~deseeEvSE 940 (1001)
T COG5406 927 SDDESDESEEEVSE 940 (1001)
T ss_pred Ccccccccchhhhh
Confidence 44444555555555
Done!