Query 020864
Match_columns 320
No_of_seqs 155 out of 205
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 09:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xvc_A ESCRT-III, SSO0910; cel 20.5 16 0.00055 27.3 -0.7 15 198-212 43-57 (59)
2 2ca6_A RAN GTPase-activating p 17.9 49 0.0017 29.7 1.8 12 45-56 323-334 (386)
3 4fp9_B Mterf domain-containing 17.4 47 0.0016 31.5 1.6 9 46-54 269-277 (335)
4 2oy9_A UPF0223 protein BH2638; 17.4 55 0.0019 26.6 1.8 13 209-221 21-33 (98)
5 1ej5_A WAsp, wiskott-aldrich s 16.1 43 0.0015 27.3 0.8 24 44-67 82-105 (107)
6 2qwo_B Putative tyrosine-prote 10.2 89 0.003 24.4 1.0 19 43-61 46-64 (92)
7 3ax2_A Mitochondrial import re 9.7 1.2E+02 0.0042 23.0 1.6 13 206-218 34-46 (73)
8 2ket_A Cathelicidin-6; antimic 8.5 1.6E+02 0.0055 18.4 1.5 11 44-54 7-17 (27)
9 2bpa_3 Protein (subunit of bac 6.8 3E+02 0.01 18.3 2.3 23 20-42 3-25 (37)
10 2ys8_A RAB-related GTP-binding 6.6 2.8E+02 0.0096 20.7 2.4 17 45-61 42-58 (90)
No 1
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=20.51 E-value=16 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.4
Q ss_pred hhhhHHHHhhhHHHH
Q 020864 198 EKFLIGVATKGVVKL 212 (320)
Q Consensus 198 Er~LrkiAtrGVVqL 212 (320)
=..|++++++|+++|
T Consensus 43 ~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 43 VKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHCCCeec
Confidence 357999999999875
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=17.93 E-value=49 Score=29.71 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHh
Q 020864 45 NKMRKLFRKRAR 56 (320)
Q Consensus 45 ~~~~kl~~k~~~ 56 (320)
..+..+|..+-.
T Consensus 323 ~~l~~~l~~~~~ 334 (386)
T 2ca6_A 323 DEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHhhhcCc
Confidence 445555555543
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=17.36 E-value=47 Score=31.46 Aligned_cols=9 Identities=22% Similarity=0.530 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 020864 46 KMRKLFRKR 54 (320)
Q Consensus 46 ~~~kl~~k~ 54 (320)
.|+|+|.+-
T Consensus 269 ~F~k~~~~e 277 (335)
T 4fp9_B 269 VFKKLLARE 277 (335)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 455555443
No 4
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=17.36 E-value=55 Score=26.57 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=11.3
Q ss_pred HHHHhHHHHHHHH
Q 020864 209 VVKLFNAVNKAQH 221 (320)
Q Consensus 209 VVqLFNAV~k~Q~ 221 (320)
||.+||+|.++=-
T Consensus 21 Vi~F~~~VE~AYE 33 (98)
T 2oy9_A 21 VVHFFQAIEQAYD 33 (98)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 5
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=16.07 E-value=43 Score=27.27 Aligned_cols=24 Identities=25% Similarity=0.500 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCcccC
Q 020864 44 NNKMRKLFRKRARAYNSDDDEDES 67 (320)
Q Consensus 44 ~~~~~kl~~k~~~~y~s~d~e~~~ 67 (320)
-..++..+.+|.+..||||++|+.
T Consensus 82 ~~al~~~~~~r~~~i~s~~e~~~~ 105 (107)
T 1ej5_A 82 VGALMHVMQKRSRAIHSSDEGEDQ 105 (107)
T ss_dssp HHHHHHHGGGGSSCCCCCCSSCCS
T ss_pred HHHHHHHHHHHhhcccCCCccccc
Confidence 356778889999999999988764
No 6
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=10.22 E-value=89 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHhhhCCC
Q 020864 43 INNKMRKLFRKRARAYNSD 61 (320)
Q Consensus 43 ~~~~~~kl~~k~~~~y~s~ 61 (320)
-...++|+|||.|.-||-|
T Consensus 46 s~~eIKkAYRklal~~HPD 64 (92)
T 2qwo_B 46 TPEQVKKVYRKAVLVVHPC 64 (92)
T ss_dssp SHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHCcC
Confidence 4678999999999999987
No 7
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=9.65 E-value=1.2e+02 Score=22.99 Aligned_cols=13 Identities=46% Similarity=0.511 Sum_probs=11.0
Q ss_pred hhhHHHHhHHHHH
Q 020864 206 TKGVVKLFNAVNK 218 (320)
Q Consensus 206 trGVVqLFNAV~k 218 (320)
..||+.|+|||+-
T Consensus 34 ~~~~~hf~nAl~V 46 (73)
T 3ax2_A 34 EKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3789999999973
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=8.53 E-value=1.6e+02 Score=18.44 Aligned_cols=11 Identities=45% Similarity=0.803 Sum_probs=8.5
Q ss_pred CHHHHHHHHHH
Q 020864 44 NNKMRKLFRKR 54 (320)
Q Consensus 44 ~~~~~kl~~k~ 54 (320)
.++|+|||.|-
T Consensus 7 rkkfkklfkkl 17 (27)
T 2ket_A 7 RKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 57888888774
No 9
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=6.85 E-value=3e+02 Score=18.29 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=13.2
Q ss_pred ccccCCCccccccCCCCCCcccc
Q 020864 20 SKKKGGKGKKKLKVMPGSGERVK 42 (320)
Q Consensus 20 ~~k~~~~~~k~~~~~~g~k~~~k 42 (320)
|+|.++-++-.-.|-.|+|++.|
T Consensus 3 gkkrsgarpgrpqplrgtkgkrk 25 (37)
T 2bpa_3 3 GKKRSGARPGRPQPLRGTKGKRK 25 (37)
T ss_dssp CCCCCCCCCSCCCCBCCSCCSSC
T ss_pred ccccCCCCCCCCccccccccccc
Confidence 34445555545556677776665
No 10
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=6.56 E-value=2.8e+02 Score=20.68 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCC
Q 020864 45 NKMRKLFRKRARAYNSD 61 (320)
Q Consensus 45 ~~~~kl~~k~~~~y~s~ 61 (320)
..+++.||+.++.||-|
T Consensus 42 ~eIk~aYr~la~~~HPD 58 (90)
T 2ys8_A 42 DEVNKAYRKLAVLLHPD 58 (90)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHCcC
Done!