BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020866
         (320 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99J36|THUM1_MOUSE THUMP domain-containing protein 1 OS=Mus musculus GN=Thumpd1 PE=1
           SV=1
          Length = 350

 Score = 32.3 bits (72), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 93/257 (36%), Gaps = 44/257 (17%)

Query: 24  RFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKRLESSNTAGDSKR--RKVCT 81
           R D   P  L +    G L+TC +  E+   +EA S+L       N  GD      K   
Sbjct: 30  RGDAGGPRQL-EPGLQGILITCNM-NERKCVEEAYSLL-------NEYGDDMYGPEKFID 80

Query: 82  DDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTF 141
            D     ++G      E+D A    K E       D    T+  +   +   +G   + F
Sbjct: 81  KDQQPSGSEG------EDDDAEAALKKEV-----GDIKASTEKRLRRFQSVESGANNVVF 129

Query: 142 PREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVN 201
            R        +V +I Q +     K      R+ PI  TC    K     + K    F+ 
Sbjct: 130 IRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTC----KAFLEDMKKYAETFL- 184

Query: 202 DEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSD 261
           +   K      F + Y  R                  ++ ++R +    +A  V  + S+
Sbjct: 185 EPWFKAPNKGTFQIVYKSRN-----------------NSHMNREEVIKELAGIVGSLNSE 227

Query: 262 SAVDLKSPELSVLVELL 278
           + VDL +PE +V+VE++
Sbjct: 228 NKVDLTNPEYTVVVEII 244


>sp|Q24K03|THUM1_BOVIN THUMP domain-containing protein 1 OS=Bos taurus GN=THUMPD1 PE=2
           SV=1
          Length = 357

 Score = 32.3 bits (72), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 55/269 (20%), Positives = 102/269 (37%), Gaps = 50/269 (18%)

Query: 15  QHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKRLESSNTAGDS 74
           Q+ +     R+D   P  L +    G L+TC +  E+   +EA S+L++           
Sbjct: 21  QYVQAKRARRWDGGGPRQL-EPGIQGILITCNM-NERKCVEEAYSLLNE----------- 67

Query: 75  KRRKVCTDDMGG--KCADGAEINSIEEDSAGGLQKNECHSSVKT---DTNTETDFDMSLV 129
                  DDM G  K AD       ++ S    + ++  +++K    D    T+  +   
Sbjct: 68  -----YGDDMYGPEKFAD-----KDQQPSGSEGEDDDVEAALKKEVGDIKASTEMRLRRF 117

Query: 130 KLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQ 189
           +   +G   + F R        +V +I Q +     K      R+ PI  TC    K   
Sbjct: 118 QSVESGANNVVFIRTLGIEPEKLVHHILQDIYKTKKKKTRVILRMLPISGTC----KAFL 173

Query: 190 ATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFT 249
             + K    F+ +   K      F + Y  R                  ++ ++R +   
Sbjct: 174 EDMKKYAETFL-EPWFKAPNKGTFQIVYKSRN-----------------NSHMNREEVIK 215

Query: 250 IVAAAVKEVVSDSAVDLKSPELSVLVELL 278
            +A  V  + S++ VDL +P+ +V+VE++
Sbjct: 216 ELAGIVGSLNSENKVDLSNPQYTVVVEII 244


>sp|Q5DTT3|F208B_MOUSE Protein FAM208B OS=Mus musculus GN=Fam208b PE=2 SV=2
          Length = 2382

 Score = 32.0 bits (71), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 58   ISILHKRLESSNTAGDSKR---RKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSV 114
            + + H  LESS  +   ++    K  TD +      G    S+++ S+  ++KN C S V
Sbjct: 1525 VDVKHLALESSVPSCSPRKVVENKSLTDTLVSITTSGIVNMSLKQTSSKNIKKNVCDSDV 1584

Query: 115  KTDTNTETDFDMSLVKLTRNGLLL 138
            KTD++ +T+ D ++     N  L+
Sbjct: 1585 KTDSDVKTEADSNMQTEAVNSALI 1608


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,256,146
Number of Sequences: 539616
Number of extensions: 4431452
Number of successful extensions: 8398
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 8397
Number of HSP's gapped (non-prelim): 16
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)