Query 020867
Match_columns 320
No_of_seqs 120 out of 248
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 05:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 3.4E-63 7.3E-68 447.7 19.4 191 79-282 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 9E-55 2E-59 409.1 19.2 279 1-312 1-290 (308)
3 PF02228 Gag_p19: Major core p 62.6 7.8 0.00017 31.3 2.8 33 90-122 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 40.7 19 0.00041 35.8 2.1 43 86-128 149-192 (355)
5 PF15405 PH_5: Pleckstrin homo 21.7 42 0.00091 28.9 0.9 16 230-245 21-36 (135)
6 PRK11593 folB bifunctional dih 21.4 3E+02 0.0064 22.7 5.9 33 94-126 52-89 (119)
7 cd04596 CBS_pair_DRTGG_assoc T 18.6 1.7E+02 0.0036 22.2 3.6 78 111-195 11-92 (108)
8 PF06597 Clostridium_P47: Clos 17.5 2E+02 0.0043 29.9 4.8 28 79-106 124-153 (456)
9 cd01737 LSm16_N LSm16 belongs 16.0 1.7E+02 0.0038 22.4 2.9 28 122-149 1-29 (62)
10 PF02152 FolB: Dihydroneopteri 15.4 2.1E+02 0.0045 23.0 3.6 37 89-125 43-85 (113)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=3.4e-63 Score=447.65 Aligned_cols=191 Identities=48% Similarity=0.866 Sum_probs=169.2
Q ss_pred CeEEEEEeecCCCCCCHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecccccCchhH
Q 020867 79 GVVQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCI 158 (320)
Q Consensus 79 e~V~VDFeffdP~e~DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGTvVK~~~ded~dvyg~~SvLNL~~~k~~~~i 158 (320)
|+|||||+||||+|.||||||+||+|||+++.||+++|||+|++|++||||||++|++|+|||||+|||||++|++++||
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 57999999999999999999999999999999999999999999999999999954567899999999999999999999
Q ss_pred HHHHHHHHhhcc---ChhhHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCChhhhcCccccc
Q 020867 159 KELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRNFFCFK 235 (320)
Q Consensus 159 k~L~~yLlk~~~---~~~~~~~L~~lL~~~~~~vGLLinER~IN~P~ql~ppL~~~L~eEI~wA~e~~~~ee~r~~f~F~ 235 (320)
++|++||+++|+ .+++.+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999998886 57788999999998889999999999999999999999999999999999875 679999
Q ss_pred EEEEEEeEEeecccchhhhhhhhhhccCCCCCCCcccccCchhhHHh
Q 020867 236 CYLLVSKIYKLKHKNANQKNKRNLKRRSASDSGDEIVYIKPEDEIFH 282 (320)
Q Consensus 236 hyLiiSK~y~~~~~~~~~kk~k~kKkk~~~~~~~e~~y~~pEDEif~ 282 (320)
|||+|||+|++... +++ ++++| ....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~--~~~-~~~~~----~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKK--KKR-KKKKK----KKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeeccc--ccc-ccccc----cCCcccceeCChhhhhcC
Confidence 99999999984221 111 11111 123478999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=9e-55 Score=409.08 Aligned_cols=279 Identities=30% Similarity=0.497 Sum_probs=220.9
Q ss_pred CCCCcccccCCCCCCccccchhHHHHHHHhhhcccccccccccCCCCCCCCccccccccccccCCCCCCCCCccCCCCCe
Q 020867 1 MPRRPTRRRRMLNPQPLTFSPFARSVAQIASIHVDRCQTHKSKDQKGSPLNSKDKGIWKHTLEGKNDLSESSEEEGSGGV 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dssdde~~~e~ 80 (320)
||+|++||++.+++.++.++||-|..+. ++........+ .+++ -+..+++++.+++
T Consensus 1 m~~~~~~~~~~s~~k~~~l~~~~r~~~e-~~~v~~~~edd---------------------dD~d--~~~eeek~~e~e~ 56 (308)
T KOG3034|consen 1 MASRSKRRAVESKYKQLPLPPFQRDEEE-EEDVEDESEDD---------------------DDED--KENEEEKEVEDEE 56 (308)
T ss_pred CCCcccchhhhhcCCCCCCcchhccccc-cccccccccCc---------------------cccc--ccchhhhccccce
Confidence 8999999999999999999999998875 22111110000 0111 1222334445789
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeccccc
Q 020867 81 VQADFVFFDPKPDDFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGTVVKIEGDD-------DNTPFSIVTALNLRRYK 153 (320)
Q Consensus 81 V~VDFeffdP~e~DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGTvVK~~~de-------d~dvyg~~SvLNL~~~k 153 (320)
||+||||++|++.||||||+||+|+|..+++|+++|||+||+|+.+|+|||+++++ ++|+||++|+||++..+
T Consensus 57 vnidFE~~~p~d~D~~giknLL~Qlfl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~ 136 (308)
T KOG3034|consen 57 VNIDFEAYSPSDVDADGIKNLLQQLFLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARK 136 (308)
T ss_pred EeccccccCCCCcchHHHHHHHHHHhccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhc
Confidence 99999999999999999999999999999999999999999999999999999754 26889999999999999
Q ss_pred CchhHHHHHHHHHhhcc---ChhhHHHHHHHhcCCCCceEEEEecccccCCccchHHHHHHHHHHHHHhhhCCChhhhcC
Q 020867 154 DHKCIKELKEFLLKVCL---EKDVIKDLRLFMGEQANDVGLLVSQRVVNLPPQLLPPLYDALFDEVSWATEDEPTEELRN 230 (320)
Q Consensus 154 ~~~~ik~L~~yLlk~~~---~~~~~~~L~~lL~~~~~~vGLLinER~IN~P~ql~ppL~~~L~eEI~wA~e~~~~ee~r~ 230 (320)
+.+||++|.+|+++.|. ++++.++|+.+|.+++++|||||||||||||+||+||||++|++||+||..++ +
T Consensus 137 ~~~~ikqL~~yvL~r~~k~~~k~v~~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~------k 210 (308)
T KOG3034|consen 137 DTKCIKQLQEYVLRRCKKNAEKEVVEQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN------K 210 (308)
T ss_pred cchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC------C
Confidence 99999999999998887 57899999999999999999999999999999999999999999999998543 5
Q ss_pred cccccEEEEEEeEEeecccchhhhhhhhhh-ccCCCCCCCcccccCchhhHHhhcceeEEEEecccccchhhhccCceEE
Q 020867 231 FFCFKCYLLVSKIYKLKHKNANQKNKRNLK-RRSASDSGDEIVYIKPEDEIFHKLSLWSFSFPMQTQQVETQEASNIVVC 309 (320)
Q Consensus 231 ~f~F~hyLiiSK~y~~~~~~~~~kk~k~kK-kk~~~~~~~e~~y~~pEDEif~k~A~~sf~y~~~~~~~~~~e~~~~~~~ 309 (320)
+|.|.||+++.+.|....+....+++..|| +.+..-.++++.|+||||+++...+...+.|...-+ ..-+..||.+
T Consensus 211 p~~f~~~lll~~~y~~eakk~~~s~~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~~d---~~~~~~~r~l 287 (308)
T KOG3034|consen 211 PYDFCYFLLLVKTYFVEAKKGKSSEKPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAGVD---PGVIFHFRRL 287 (308)
T ss_pred ccceEEEEEEEEEeeehhccCCCcccccccHHHHhhhccchhhccchHhhhhhhhhccccccccCCC---CccccccceE
Confidence 699999999999998532211111111122 112234678999999999976667777777765522 2223448888
Q ss_pred EEE
Q 020867 310 FFW 312 (320)
Q Consensus 310 ~~~ 312 (320)
++|
T Consensus 288 ~il 290 (308)
T KOG3034|consen 288 LIL 290 (308)
T ss_pred EEe
Confidence 876
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=62.55 E-value=7.8 Score=31.28 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHhhcc----cCCChhhHHHHHHc
Q 020867 90 PKPDDFHGVKILLQTYLDD----AQWDLSGFVDLILA 122 (320)
Q Consensus 90 P~e~DfhgIK~LL~qlf~~----~~~dls~LaDlIl~ 122 (320)
|++-|||-+|++|.-.+.. +.||.|=||.+|-.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 5667999999999876643 68999999998754
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=40.71 E-value=19 Score=35.76 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=39.3
Q ss_pred eecCCCCC-CHHHHHHHHHHhhcccCCChhhHHHHHHcCCCcce
Q 020867 86 VFFDPKPD-DFHGVKILLQTYLDDAQWDLSGFVDLILAQTTVGT 128 (320)
Q Consensus 86 effdP~e~-DfhgIK~LL~qlf~~~~~dls~LaDlIl~Q~~vGT 128 (320)
.||||-|+ |+|.+-+-|...+.++-++.-.++|++++++-||-
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VGV 192 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVGV 192 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeEE
Confidence 59999997 99999999999998889999999999999988883
No 5
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=21.67 E-value=42 Score=28.92 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.4
Q ss_pred CcccccEEEEEEeEEe
Q 020867 230 NFFCFKCYLLVSKIYK 245 (320)
Q Consensus 230 ~~f~F~hyLiiSK~y~ 245 (320)
..|=|||||+++|.-+
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 4688999999999854
No 6
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=21.37 E-value=3e+02 Score=22.68 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHhhcccCCCh-----hhHHHHHHcCCCc
Q 020867 94 DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTTV 126 (320)
Q Consensus 94 DfhgIK~LL~qlf~~~~~dl-----s~LaDlIl~Q~~v 126 (320)
||..|-..+..+..+..|+| .++++.|+++-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998888885 4577778777543
No 7
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=18.63 E-value=1.7e+02 Score=22.25 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=39.1
Q ss_pred CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeecccccCchhHHHHHHHHHh---hcc-ChhhHHHHHHHhcCCC
Q 020867 111 WDLSGFVDLILAQTTVGTVVKIEGDDDNTPFSIVTALNLRRYKDHKCIKELKEFLLK---VCL-EKDVIKDLRLFMGEQA 186 (320)
Q Consensus 111 ~dls~LaDlIl~Q~~vGTvVK~~~ded~dvyg~~SvLNL~~~k~~~~ik~L~~yLlk---~~~-~~~~~~~L~~lL~~~~ 186 (320)
..++++.+.+. +...+.+.-++ +++.+.|+++.-+|....... .+.+++.. .+. +..+.+.++.+... +
T Consensus 11 ~~~~~a~~~~~-~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~ 83 (108)
T cd04596 11 DTVKDWHELNK-ETGHSRFPVVD--EKNKVVGIVTSKDVAGKDPDT---TIEKVMTKNPITVNPKTSVASVAHMMIWE-G 83 (108)
T ss_pred CCHHHHHHHHH-HcCCCceeEEC--CCCeEEEEecHHHHhcccccc---cHHHHhcCCCeEECCCCCHHHHHHHHHHc-C
Confidence 34556666664 44556665454 345699999876654322221 23344432 222 23345455555432 3
Q ss_pred CceEEEEec
Q 020867 187 NDVGLLVSQ 195 (320)
Q Consensus 187 ~~vGLLinE 195 (320)
.....+++|
T Consensus 84 ~~~~~Vv~~ 92 (108)
T cd04596 84 IEMLPVVDD 92 (108)
T ss_pred CCeeeEEcC
Confidence 345556654
No 8
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=17.50 E-value=2e+02 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=16.7
Q ss_pred CeEEE--EEeecCCCCCCHHHHHHHHHHhh
Q 020867 79 GVVQA--DFVFFDPKPDDFHGVKILLQTYL 106 (320)
Q Consensus 79 e~V~V--DFeffdP~e~DfhgIK~LL~qlf 106 (320)
-.|.+ .+.|-+|...+-..++.+|.++|
T Consensus 124 ~vi~i~~~~~~~~~~~~~~~~~~~~~~~ll 153 (456)
T PF06597_consen 124 AVIIILEGINFTDPDGDNDSIAKALFSALL 153 (456)
T ss_pred ceEEeeccccccCCccchhHHHHHHHHHHH
Confidence 35555 57778887765555555554443
No 9
>cd01737 LSm16_N LSm16 belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. LSm16 has, in addition to its N-terminal Sm-like domain, a C-terminal Yjef_N-type rossman fold domain of unknown function.
Probab=15.98 E-value=1.7e+02 Score=22.40 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=19.3
Q ss_pred cCCCcceEEEecCCCCCCce-EEEEeeec
Q 020867 122 AQTTVGTVVKIEGDDDNTPF-SIVTALNL 149 (320)
Q Consensus 122 ~Q~~vGTvVK~~~ded~dvy-g~~SvLNL 149 (320)
+|..+|+.|.+..+++=.|| |.++-++-
T Consensus 1 a~dWiGs~VSI~C~~~lGVyQG~i~~V~~ 29 (62)
T cd01737 1 AQDWLGSIVSINCGETLGVYQGLVSAVDQ 29 (62)
T ss_pred CCcccceEEEEecCCceEEEEEEEEEeCc
Confidence 47889999999876654444 56655543
No 10
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=15.44 E-value=2.1e+02 Score=23.05 Aligned_cols=37 Identities=16% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCCCC-CHHHHHHHHHHhhcccCCCh-----hhHHHHHHcCCC
Q 020867 89 DPKPD-DFHGVKILLQTYLDDAQWDL-----SGFVDLILAQTT 125 (320)
Q Consensus 89 dP~e~-DfhgIK~LL~qlf~~~~~dl-----s~LaDlIl~Q~~ 125 (320)
|..+. ||..|...++.++....|++ ..+++.|+++-.
T Consensus 43 ~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i~~~~~ 85 (113)
T PF02152_consen 43 DLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRILKEFP 85 (113)
T ss_dssp TGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHHHHHTT
T ss_pred ccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhCC
Confidence 44554 99999999999999888873 336677776644
Done!