Query 020868
Match_columns 320
No_of_seqs 184 out of 576
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 97.1 0.011 3.8E-07 61.4 16.5 134 69-213 52-199 (724)
2 1j7m_A Matrix metalloproteinas 15.6 63 0.0022 23.3 1.6 30 270-303 36-65 (72)
3 1pml_A Tissue plasminogen acti 13.6 61 0.0021 23.9 1.1 20 266-286 50-69 (86)
4 3arc_M Photosystem II reaction 11.8 1.4E+02 0.0048 18.6 2.1 22 153-175 5-26 (36)
5 5hpg_A Plasminogen; serine pro 9.2 1.4E+02 0.005 21.6 1.9 21 268-288 49-69 (84)
6 2qj2_A Hepatocyte growth facto 8.4 1.6E+02 0.0053 25.1 1.9 22 267-288 148-169 (184)
7 1i71_A APO(A), apolipoprotein( 8.3 1.7E+02 0.0058 21.3 1.9 21 268-289 48-68 (83)
8 2lma_A THP5 peptide; CD4+, imm 8.2 87 0.003 17.6 0.2 9 293-301 4-12 (26)
9 1nl1_A Prothrombin; hydrolase; 8.2 1.6E+02 0.0055 23.9 1.9 23 267-289 111-133 (147)
10 3k65_A Prothrombin; coagulatio 7.9 1.7E+02 0.0059 22.8 1.9 22 267-288 60-81 (116)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=97.13 E-value=0.011 Score=61.41 Aligned_cols=134 Identities=14% Similarity=0.011 Sum_probs=92.9
Q ss_pred cccccHHHHHHHhhc---CCCcc-ccccccccHHHHHHHHHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020868 69 SIVWDSVYFVRIAQC---GYEYE-QSYAFLPLLPAFTHLLSRSVLAPLIGVIGYRAVLGLAGYIVSNVAFLFAAVYFYRL 144 (320)
Q Consensus 69 ~~~WDa~~f~~IA~~---GY~~e-~~~AFfPl~P~l~r~~~~~~~~~l~~~~~~~~~~~~a~~lvs~~~~~~a~~~ly~L 144 (320)
+..=|+-||++-|++ |...+ ..-.+-|+++.++..+...++ . ....+++.+..+++.++++.+|.+
T Consensus 52 ~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g~~~~~l~a~l~~i~g--~--------sl~~v~~~lp~ifg~L~vi~~yll 121 (724)
T 3rce_A 52 ITTNDGYAFAEGARDMIAGFHQPNDLSYFGSSLSTLTYWLYSILP--F--------SFESIILYMSTFFASLIVVPIILI 121 (724)
T ss_dssp CSCHHHHHHHHHHHHHHHSCCCTTSCCCTTCHHHHHHHHHHHSCS--S--------CHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred eccCCHHHHHHHHHHHHhcCCCCCCCCCCcchHHHHHHHHHHHcC--C--------CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999987753 43322 223456788998888887642 2 134567777788888899999999
Q ss_pred HHHHhCChhHHHHHHHHHhhchhhHHHHhh---chhHHHHHHHHHHHHHHH---hhh----HHHHHHHHHHHHhhcchh
Q 020868 145 SVMILKDPDAALCASLLFCFNPASIFYTSI---YSESLYALFSVGGLYYLM---SGA----LNISVLWLAISGCARSNG 213 (320)
Q Consensus 145 ~~~~~~~~~~a~~aall~~~~Pasif~~a~---YtEslF~~l~~~~l~~~~---~~~----~~~a~~~~~la~~~RsnG 213 (320)
++++. +++.|..|+++.++.|+-+.=+++ -+|++..++...++++.. +++ ..++++..++...+-+.|
T Consensus 122 ~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~gg 199 (724)
T 3rce_A 122 AREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSS 199 (724)
T ss_dssp HHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcch
Confidence 99887 688999999999999996544433 367655555544444443 322 246777777888888877
No 2
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=15.55 E-value=63 Score=23.31 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=19.3
Q ss_pred cccCCcCCCCCccccccCCcchhHhhhhcccccc
Q 020868 270 MCLGRSPDEMRPWCKAKVPLLYNFIQSHYWYSKF 303 (320)
Q Consensus 270 fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvGf 303 (320)
=|......+.++||.-+ -.|-+++-|+.--
T Consensus 36 ~Ct~~g~~~~~~WCaTT----~nyd~D~~Wg~C~ 65 (72)
T 1j7m_A 36 SCTSAGRSDGKMWCATT----ANYDDDRKWGFCP 65 (72)
T ss_dssp SCBCTTCSSSCCEEESS----SBHHHHCCEEECC
T ss_pred ccccCCCCCCceeecCc----cccCCCCCEeeCC
Confidence 36543333358999877 3477888888543
No 3
>1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
Probab=13.58 E-value=61 Score=23.87 Aligned_cols=20 Identities=35% Similarity=0.904 Sum_probs=13.6
Q ss_pred hhhhcccCCcCCCCCcccccc
Q 020868 266 GYFNMCLGRSPDEMRPWCKAK 286 (320)
Q Consensus 266 ~Y~~fC~~~~~~~~~~WC~~~ 286 (320)
+-..||....++ .+|||--+
T Consensus 50 g~~NyCRNPdg~-~~PWCyt~ 69 (86)
T 1pml_A 50 GKHNYCRNPDGD-AKPWCHVL 69 (86)
T ss_dssp SSSCCCBCSSCC-SSCEEEEE
T ss_pred ccCccccCCCCC-CCCceEec
Confidence 357899765444 49999644
No 4
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=11.78 E-value=1.4e+02 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhhchhhHHHHhhc
Q 020868 153 DAALCASLLFCFNPASIFYTSIY 175 (320)
Q Consensus 153 ~~a~~aall~~~~Pasif~~a~Y 175 (320)
..|+.|+++|++-|.++.. ..|
T Consensus 5 ~l~fiAt~Lfi~iPt~FLl-ilY 26 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLI-ILY 26 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHh
Confidence 4688999999999988643 344
No 5
>5hpg_A Plasminogen; serine protease, kringle 5, fibrinolysis; 1.66A {Homo sapiens} SCOP: g.14.1.1 PDB: 2knf_A
Probab=9.23 E-value=1.4e+02 Score=21.61 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=14.0
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....+|..+|||--+-|
T Consensus 49 ~NyCRNPdgd~~~PWCyt~~~ 69 (84)
T 5hpg_A 49 KNYCRNPDGDVGGPWCYTTNP 69 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBSCT
T ss_pred cccccCCCCCCCCCEeEECCC
Confidence 579975544445899965544
No 6
>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A
Probab=8.38 E-value=1.6e+02 Score=25.10 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=15.0
Q ss_pred hhhcccCCcCCCCCccccccCC
Q 020868 267 YFNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 267 Y~~fC~~~~~~~~~~WC~~~~P 288 (320)
-..||....+++.+|||--+.|
T Consensus 148 ~hNYCRNPDgd~~~PWCYt~d~ 169 (184)
T 2qj2_A 148 QENYCRNPRGEEGGPWCFTSNP 169 (184)
T ss_dssp CTTCCBCSSCCTTCSEEEBSST
T ss_pred CCCcccCCCCCCCCCceEcCCC
Confidence 4689975544445899977666
No 7
>1i71_A APO(A), apolipoprotein(A); alipoprotein(A), kringle, protein-ligand interaction, lysine binding, hydrolase; 1.45A {Homo sapiens} SCOP: g.14.1.1 PDB: 1kiv_A 3kiv_A 4kiv_A 1krn_A 1pmk_A 2pk4_A 1pk4_A
Probab=8.26 E-value=1.7e+02 Score=21.26 Aligned_cols=21 Identities=33% Similarity=0.839 Sum_probs=14.7
Q ss_pred hhcccCCcCCCCCccccccCCc
Q 020868 268 FNMCLGRSPDEMRPWCKAKVPL 289 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P~ 289 (320)
..||....++ .+|||--+-|.
T Consensus 48 ~NyCRNPdg~-~~PWCyt~d~~ 68 (83)
T 1i71_A 48 RNYCRNPDAE-IRPWCYTMDPS 68 (83)
T ss_dssp TTCCBCSSSC-SSCEEEBSSTT
T ss_pred cccccCCCCC-CCCceEeCCCC
Confidence 6899755444 59999776663
No 8
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=8.22 E-value=87 Score=17.58 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=8.1
Q ss_pred Hhhhhcccc
Q 020868 293 FIQSHYWYS 301 (320)
Q Consensus 293 ~vQ~~YWnv 301 (320)
|.|.+|.+|
T Consensus 4 ylqteyydv 12 (26)
T 2lma_A 4 YLQTEYYDV 12 (26)
T ss_dssp THHHHHHTT
T ss_pred cccceeeee
Confidence 789999998
No 9
>1nl1_A Prothrombin; hydrolase; HET: CGU NAG; 1.90A {Bos taurus} SCOP: g.14.1.1 g.32.1.1 PDB: 2pf2_A* 2pf1_A* 1nl2_A* 2spt_A*
Probab=8.18 E-value=1.6e+02 Score=23.88 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=15.4
Q ss_pred hhhcccCCcCCCCCccccccCCc
Q 020868 267 YFNMCLGRSPDEMRPWCKAKVPL 289 (320)
Q Consensus 267 Y~~fC~~~~~~~~~~WC~~~~P~ 289 (320)
-..||....++..+|||--+.|.
T Consensus 111 ~~NYCRNPd~~~~~PWCYt~d~~ 133 (147)
T 1nl1_A 111 RENFCRNPDGSITGPWCYTTSPT 133 (147)
T ss_dssp CTTCCBCTTCCTTCSEEEBSSTT
T ss_pred CCccCcCCCCCCCCCceEeCCCC
Confidence 46789754444358999777663
No 10
>3k65_A Prothrombin; coagulation, zymogen, hydrolase; 1.85A {Homo sapiens} PDB: 2hpq_P* 2hpp_P*
Probab=7.91 E-value=1.7e+02 Score=22.78 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=14.7
Q ss_pred hhhcccCCcCCCCCccccccCC
Q 020868 267 YFNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 267 Y~~fC~~~~~~~~~~WC~~~~P 288 (320)
-..||....++..+|||--+-|
T Consensus 60 ~hNYCRNPDgd~~gPWCYt~d~ 81 (116)
T 3k65_A 60 VENFCRNPDGDEEGVWCYVAGK 81 (116)
T ss_dssp CTTCCBCTTCCTTCCEEECSSS
T ss_pred ccccccCCCCCCCCCeeEeCCC
Confidence 3579975544445799976655
Done!