Query 020868
Match_columns 320
No_of_seqs 184 out of 576
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:22:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020868.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020868hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qj2a2 g.14.1.1 (A:127-209) N 23.4 14 0.001 25.4 1.4 21 268-288 48-68 (83)
2 d2hpqp_ g.14.1.1 (P:) Meizothr 19.7 20 0.0015 24.3 1.5 21 268-288 47-67 (79)
3 d5hpga_ g.14.1.1 (A:) Plasmino 19.2 19 0.0014 24.7 1.3 21 268-288 49-69 (84)
4 d1nl1a1 g.14.1.1 (A:66-147) Pr 17.1 23 0.0016 24.2 1.3 21 268-288 47-67 (82)
5 d1ki0a1 g.14.1.1 (A:81-163) Pl 17.0 23 0.0017 24.2 1.3 21 268-288 50-70 (83)
6 d1l6ja3 g.14.1.2 (A:216-274) G 16.3 28 0.0021 22.5 1.5 18 279-300 37-54 (59)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 15.1 44 0.0032 19.3 2.0 22 153-175 5-26 (36)
8 d1e88a2 g.14.1.2 (A:102-160) F 14.9 33 0.0024 22.1 1.6 26 271-300 29-54 (59)
9 d1a0ha1 g.14.1.1 (A:164-270) M 13.8 30 0.0022 24.9 1.3 31 268-302 53-83 (109)
10 d1eaka5 g.14.1.2 (A:336-393) G 13.5 37 0.0027 21.8 1.5 27 270-300 27-53 (58)
No 1
>d2qj2a2 g.14.1.1 (A:127-209) NK1 fragment of hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.44 E-value=14 Score=25.37 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=13.9
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....+++.+|||--.-|
T Consensus 48 hNyCRNP~~~~~~PWCy~~~~ 68 (83)
T d2qj2a2 48 ENYCRNPRGEEGGPWCFTSNP 68 (83)
T ss_dssp TTCCBCSSCCTTCSEEEBSST
T ss_pred cccccCCCCCCCCcceEeCCC
Confidence 689975544446899964434
No 2
>d2hpqp_ g.14.1.1 (P:) Meizothrombin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.72 E-value=20 Score=24.30 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=13.8
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....++..+|||--.-|
T Consensus 47 ~NyCRNP~~~~~~PWCyt~~~ 67 (79)
T d2hpqp_ 47 ENFCRNPDGDEEGVWCYVAGK 67 (79)
T ss_dssp TTCCBCSSCCSSCCBCBCSSS
T ss_pred cccccCCCCCCCCcceEeCCC
Confidence 579975444445899975444
No 3
>d5hpga_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.22 E-value=19 Score=24.70 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=13.5
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....++..+|||--.-|
T Consensus 49 ~NyCRNP~~~~~~PWCy~~~~ 69 (84)
T d5hpga_ 49 KNYCRNPDGDVGGPWCYTTNP 69 (84)
T ss_dssp TTCCBCTTCCTTCCEEEBSCT
T ss_pred cccccCCCCCcCCCCeEeCCC
Confidence 679975444446899964333
No 4
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.07 E-value=23 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.697 Sum_probs=13.9
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....++..+|||--+-|
T Consensus 47 ~NyCRNP~~~~~~PWCyv~~~ 67 (82)
T d1nl1a1 47 ENFCRNPDGSITGPWCYTTSP 67 (82)
T ss_dssp TTCCBCTTCCTTCSEEEBSST
T ss_pred cccccCCCCCCCCCCeEeCCC
Confidence 579975444445899975545
No 5
>d1ki0a1 g.14.1.1 (A:81-163) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.97 E-value=23 Score=24.17 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=13.6
Q ss_pred hhcccCCcCCCCCccccccCC
Q 020868 268 FNMCLGRSPDEMRPWCKAKVP 288 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P 288 (320)
..||....++..+|||--+-|
T Consensus 50 hNyCRNP~~~~~~PWCy~~~~ 70 (83)
T d1ki0a1 50 ENYCRNPDNDPQGPWCYTTDP 70 (83)
T ss_dssp TTCCBCTTCCTTCCEEEBSCT
T ss_pred cccccCCCCCCCCCceEecCC
Confidence 679975444445899975444
No 6
>d1l6ja3 g.14.1.2 (A:216-274) Gelatinase B (MMP-9) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.31 E-value=28 Score=22.51 Aligned_cols=18 Identities=22% Similarity=0.556 Sum_probs=11.4
Q ss_pred CCccccccCCcchhHhhhhccc
Q 020868 279 MRPWCKAKVPLLYNFIQSHYWY 300 (320)
Q Consensus 279 ~~~WC~~~~P~~Ys~vQ~~YWn 300 (320)
.+|||.-+ ..|=+++.|+
T Consensus 37 ~~~WCaTT----~nyd~d~~W~ 54 (59)
T d1l6ja3 37 GLPWCSTT----ANYDTDDRFG 54 (59)
T ss_dssp CCCEEESS----SBHHHHCCEE
T ss_pred CcCEeCcc----cccccCCccc
Confidence 48999877 3344445564
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.14 E-value=44 Score=19.27 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhhchhhHHHHhhc
Q 020868 153 DAALCASLLFCFNPASIFYTSIY 175 (320)
Q Consensus 153 ~~a~~aall~~~~Pasif~~a~Y 175 (320)
..++.|.++|++-|+.+.. ..|
T Consensus 5 ~Lg~iAt~LFilvPt~FLl-iLy 26 (36)
T d2axtm1 5 QLGLIATALFVLVPSVFLI-ILY 26 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhh
Confidence 5688999999999987533 344
No 8
>d1e88a2 g.14.1.2 (A:102-160) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.89 E-value=33 Score=22.13 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=14.3
Q ss_pred ccCCcCCCCCccccccCCcchhHhhhhccc
Q 020868 271 CLGRSPDEMRPWCKAKVPLLYNFIQSHYWY 300 (320)
Q Consensus 271 C~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWn 300 (320)
|......+.+|||.-+ ..|=+++-|+
T Consensus 29 Ct~~g~~~~~~WCaTT----~nyd~d~~W~ 54 (59)
T d1e88a2 29 CTSEGRRDNMKWCGTT----QNYDADQKFG 54 (59)
T ss_dssp CCCTTCCSSCCEEESS----TBHHHHCCEE
T ss_pred ccCCCCCCCcCCcCCc----cccccCCccc
Confidence 5433222348999877 3344445565
No 9
>d1a0ha1 g.14.1.1 (A:164-270) Meizothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.77 E-value=30 Score=24.90 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=18.8
Q ss_pred hhcccCCcCCCCCccccccCCcchhHhhhhccccc
Q 020868 268 FNMCLGRSPDEMRPWCKAKVPLLYNFIQSHYWYSK 302 (320)
Q Consensus 268 ~~fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWnvG 302 (320)
+.||..-.++..+|||--.-|. ++-+|-||-
T Consensus 53 hNyCRNPdg~~~~PWCYv~~~~----~~~eyC~ip 83 (109)
T d1a0ha1 53 ENFCRNPDGDEEGAWCYVADQP----GDFEYCDLN 83 (109)
T ss_dssp TTSCBCTTCCTTCCEEECSSST----TCEEECCCC
T ss_pred cccccCCCCCCCCceeEecCCC----CCeEeCCCC
Confidence 6799754444458999754443 334566653
No 10
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.46 E-value=37 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.582 Sum_probs=14.2
Q ss_pred cccCCcCCCCCccccccCCcchhHhhhhccc
Q 020868 270 MCLGRSPDEMRPWCKAKVPLLYNFIQSHYWY 300 (320)
Q Consensus 270 fC~~~~~~~~~~WC~~~~P~~Ys~vQ~~YWn 300 (320)
=|......+.+|||.-+ ..|=+++.|+
T Consensus 27 ~Ct~~~~~~~~~WCatt----~nyd~d~~W~ 53 (58)
T d1eaka5 27 SCTSAGRSDGKMWCATT----ANYDDDRKWG 53 (58)
T ss_dssp SCBCTTCSSSCCEEESS----SCHHHHCCEE
T ss_pred CCccCCCCCCccCcCcc----cccccCCccc
Confidence 35433222348999877 2333444564
Done!