BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020869
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
           Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
           At 2.50 A Resolution
          Length = 200

 Score = 31.6 bits (70), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 37/81 (45%)

Query: 93  EREDGMDLDVENEEFSDDEENGEIQPGIANFAEGSRAFKMAFKSILRKSVADDALGPVLS 152
           E+ + + L   N +       G+ QP I   AE +RAF   + + + + ++DD +  V  
Sbjct: 72  EQXNSVXLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 131

Query: 153 AHKKLVGEKLAEEEAERKVKG 173
           A  K+    LA +    K KG
Sbjct: 132 AFGKIKSCTLARDPTTGKHKG 152


>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
           Ssdna From A Portion Of Fuse
 pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
           Ssdna From A Portion Of Fuse
          Length = 216

 Score = 30.8 bits (68), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 114 GEIQPGIANFAEGSRAFKMAFKSILRKSVADDALGPVLSAHKKLVGEKLAEEEAERKVKG 173
           G+ QP I   AE +RAF   + + + + ++DD +  V  A  K+    LA +    K KG
Sbjct: 109 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKG 168


>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
           Fbp-Interacting Repressor (Fir)
 pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
           The Complex With Fbp Nbox Peptide
          Length = 199

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 114 GEIQPGIANFAEGSRAFKMAFKSILRKSVADDALGPVLSAHKKLVGEKLAEEEAERKVKG 173
           G+ QP I   AE +RAF   + + + + ++DD +  V  A  K+    LA +    K KG
Sbjct: 94  GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.126    0.347 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,740,596
Number of Sequences: 62578
Number of extensions: 328832
Number of successful extensions: 459
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 14
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (24.3 bits)