BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020869
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T062|RRP15_BOVIN RRP15-like protein OS=Bos taurus GN=RRP15 PE=2 SV=1
Length = 286
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 187 HVKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQ----HAQKGLNPSRSKDEKLLKKRR 241
VKP D E+ L +AT+GVV+LFNAV K Q K S K KL+
Sbjct: 151 RVKPDVVKDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGGSIRKRAKLISSVS 210
Query: 242 KETFFSELGKTSVSTADASAKGPNSSG----TADGEGPAWAPLRDNYMLTSSKLKDWDKM 297
K+ F S L S ++ ++ G NS EGP W LRD++M+ +S +KDWDK
Sbjct: 211 KKDFISVLRGMDGSASEKNSAGKNSKAKQTEAKSEEGPGWTILRDDFMMGAS-MKDWDKE 269
Query: 298 PD 299
D
Sbjct: 270 SD 271
>sp|Q5M947|RRP15_RAT RRP15-like protein OS=Rattus norvegicus GN=Rrp15 PE=2 SV=1
Length = 280
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 187 HVKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQH----AQKGLNPSRSKDEKLLKKRR 241
VKP D E+ L +AT+GVV+LFNAV K Q K + S K KL+
Sbjct: 147 RVKPDVIKDKEAERNLQRIATRGVVQLFNAVQKHQRNVDEKVKEVGGSIRKRAKLMSTVS 206
Query: 242 KETFFSEL-GKTSVSTADASAKGPNSSGT--ADGEGPAWAPLRDNYMLTSSKLKDWDK 296
K+ F S L G S ++ K P + T EGP W LRD++M+ +S +KDWDK
Sbjct: 207 KKDFISVLRGMDGASENSSAGKSPKARQTEVKSEEGPGWKILRDDFMMGAS-MKDWDK 263
>sp|Q9Y3B9|RRP15_HUMAN RRP15-like protein OS=Homo sapiens GN=RRP15 PE=1 SV=2
Length = 282
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 187 HVKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQ----HAQKGLNPSRSKDEKLLKKRR 241
VKP D E+ L +AT+GVV+LFNAV K Q K S K KL+
Sbjct: 147 RVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVS 206
Query: 242 KETFFSELGKTSVSTAD--ASAKGPNSSGTA--DGEGPAWAPLRDNYMLTSSKLKDWDKM 297
K+ F S L ST + +S K P + T EGP W LRD++M+ +S +KDWDK
Sbjct: 207 KKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGAS-MKDWDKE 265
Query: 298 PD 299
D
Sbjct: 266 SD 267
>sp|Q9CYX7|RRP15_MOUSE RRP15-like protein OS=Mus musculus GN=Rrp15 PE=2 SV=2
Length = 281
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 187 HVKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQH----AQKGLNPSRSKDEKLLKKRR 241
VKP D E+ L +AT+GVV+LFNAV K Q K S K KL+
Sbjct: 147 RVKPDVVKDKEAERNLQRIATRGVVQLFNAVQKHQRNVGEKVKEAGGSVRKRAKLMSTVS 206
Query: 242 KETFFSEL-GKTSVSTADASAKGPNSSGT--ADGEGPAWAPLRDNYMLTSSKLKDWDK 296
K+ F S L G S + K P + T E P W LRD++M+ +S +KDWDK
Sbjct: 207 KKDFISVLRGMDGTSRNSPAGKSPKARQTEVKSEESPGWKILRDDFMMGAS-MKDWDK 263
>sp|Q7ZV20|RRP15_DANRE RRP15-like protein OS=Danio rerio GN=rrp15 PE=2 SV=1
Length = 249
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 19/107 (17%)
Query: 197 HEKFLIGVATKGVVKLFNAVNKAQHAQKGLNP-------SRSKDEKLLKKRRKETFFSEL 249
HE+ L VAT+GVV+LFNA+ ++ QK +N S K K+L K+ F L
Sbjct: 130 HERNLQRVATRGVVQLFNAL---KNHQKNVNERIKEVGGSERKKSKILSSVSKKDFIDVL 186
Query: 250 GKTSVSTADASAKGPNSSGTADGEGPAWAPLRDNYMLTSSKLKDWDK 296
T V+ S +W+ L+D++M+ +S +KDWDK
Sbjct: 187 RGTDVAVKKEKEIKAEKS--------SWSVLKDDFMMGAS-MKDWDK 224
>sp|Q296J6|RRP15_DROPS RRP15-like protein OS=Drosophila pseudoobscura pseudoobscura
GN=GA17706 PE=3 SV=1
Length = 279
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 63/144 (43%), Gaps = 30/144 (20%)
Query: 176 KKERHLAAEKGHVKPANYLDSHEKFLIGVATKGVVKLFNAVN------KAQHAQKGLNPS 229
K ER + VKP+ E+ L VAT+GVV+ FNAV + Q A G P
Sbjct: 116 KTERRNVPLQLRVKPSYQDLERERTLRKVATRGVVQFFNAVRIQQKDLEQQLADAG--PL 173
Query: 230 RSKDEKLLKKRRKETFFSEL--GKTSVSTADASA----------------KGPNSSGTAD 271
S+ + +L K F L GK + STA +A +S+G
Sbjct: 174 DSRQDAVLNNINKRKFLDVLMSGKRAKSTAIDNAVKKEEQETDDDDEDDTAEASSTGKKK 233
Query: 272 GEGPAWAPLRDNYMLTSSKLKDWD 295
E W LR+++M T+ K+K WD
Sbjct: 234 SE---WNVLREDFM-TNKKIKHWD 253
>sp|Q9VFE6|RRP15_DROME RRP15-like protein OS=Drosophila melanogaster GN=CG3817 PE=1 SV=1
Length = 276
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 176 KKERHLAAEKGHVKPANYLDSHEKFLIGVATKGVVKLFNAVNKAQH-AQKGLN---PSRS 231
K++R + VKP+ E+ L VAT+GVV+ FNAV Q Q+ L P S
Sbjct: 120 KQQRKNVPLQLRVKPSFRDMERERTLRKVATRGVVQFFNAVRIQQKDLQQQLEEAGPLDS 179
Query: 232 KDEKLLKKRRKETFFSEL--GKTSVST-ADASAK--------GPNSSGTADGEGPAWAPL 280
+ + +L K F L GK + ST D + K G++ + W+ L
Sbjct: 180 RQDAVLNNINKRKFLDVLMSGKRAKSTPVDNAVKKEEQETDDDDEDKGSSGKKKSEWSVL 239
Query: 281 RDNYMLTSSKLKDW 294
R+++M T+ K+K W
Sbjct: 240 REDFM-TNKKIKHW 252
>sp|Q8WXG9|GPR98_HUMAN G-protein coupled receptor 98 OS=Homo sapiens GN=GPR98 PE=1 SV=2
Length = 6306
Score = 36.2 bits (82), Expect = 0.32, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 21 KKKGGKGKKKLKVMPGSGERVKINNKMRKLFRKRARAYNSDDDEDESAPEFRGDSSLSVK 80
K G + L +P +GE + +MRK DDD E EF SL++
Sbjct: 4303 KTMSGTAEAGLDFVPAAGELLFEAGEMRKSLHVEIL----DDDYPEGPEEF----SLTIT 4354
Query: 81 NQEVEGRGSSDTEREDGMDLD 101
E++GRG T +E+G+ +D
Sbjct: 4355 KVELQGRGYDFTIQENGLQID 4375
>sp|Q9UTD7|RRP15_SCHPO Ribosomal RNA-processing protein 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp15 PE=3 SV=1
Length = 205
Score = 35.4 bits (80), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 187 HVKPANYLDSHEKFLIGVATKGVVKLFNAVNKAQHAQKGLN 227
+ + A L +HE+ L +A +GVV+LFNAV AQ Q LN
Sbjct: 136 NAETAKALFTHERELRRIARRGVVQLFNAVRTAQ-LQSSLN 175
>sp|Q61RF0|RRP15_CAEBR RRP15-like protein OS=Caenorhabditis briggsae GN=CBG06617 PE=3 SV=1
Length = 190
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 188 VKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQHAQKGLNPSRSKDEKLLKKRRKE 243
VKP D E+ L +ATKGVV+LFNAV+ Q S + EK+ + RKE
Sbjct: 86 VKPDITTDREKERNLRRIATKGVVQLFNAVSDRQKTM-----SDAVKEKMTARDRKE 137
>sp|P91318|RRP15_CAEEL RRP15-like protein OS=Caenorhabditis elegans GN=F53E10.6 PE=3 SV=1
Length = 191
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 188 VKPANYLDSH-EKFLIGVATKGVVKLFNAVNKAQ 220
VKP D E+ L VATKGVV+LFNAV+ Q
Sbjct: 86 VKPDITTDREKERNLRRVATKGVVQLFNAVSDRQ 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.126 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,338,882
Number of Sequences: 539616
Number of extensions: 5402137
Number of successful extensions: 23759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 22457
Number of HSP's gapped (non-prelim): 1438
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)