BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020870
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXL|A Chain A, Crystal Structure Of Red Chlorophyll Catabolite Reductase
From Arabidopsis Thaliana
pdb|2ZXL|B Chain B, Crystal Structure Of Red Chlorophyll Catabolite Reductase
From Arabidopsis Thaliana
Length = 285
Score = 300 bits (767), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 200/288 (69%), Gaps = 22/288 (7%)
Query: 47 APSSSPMDSHNEG-RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYE 105
P S M+ H++ R+KFMEFPY S +QLMVDL+STVEN L SQLLPC LPPDV+ +
Sbjct: 1 GPLGSSMEDHDDHLRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFN 60
Query: 106 NQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIE 165
N NG+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++E
Sbjct: 61 NPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVE 120
Query: 166 LIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYL 225
LIQSS SLVLILDL RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++
Sbjct: 121 LIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFV 180
Query: 226 RCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---- 281
R SP+A M+++D E E +L+ I+ +HV P AK+V+ +WL +C E+
Sbjct: 181 RSAFSPTASMLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVV 234
Query: 282 -----------DGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
D + K+IE DL FPR+FG +V+SRV+ I++ F
Sbjct: 235 GEEERMELERRDKSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 282
>pdb|3AGB|A Chain A, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGB|B Chain B, F218v Mutant Of The Substrate-Free Form Of Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGC|A Chain A, F218v Mutant Of The Substrate-Bound Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
pdb|3AGC|B Chain B, F218v Mutant Of The Substrate-Bound Red Chlorophyll
Catabolite Reductase From Arabidopsis Thaliana
Length = 276
Score = 296 bits (757), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 194/274 (70%), Gaps = 21/274 (7%)
Query: 60 RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRS 119
R+KFMEFPY S +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRS
Sbjct: 6 RRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRS 65
Query: 120 GLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILD 179
G KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILD
Sbjct: 66 GDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILD 125
Query: 180 LSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVD 239
L RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R +SP+A M+++D
Sbjct: 126 LPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAVSPTASMLKID 185
Query: 240 TETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---------------DGL 284
E E +L+ I+ +HV P AK+V+ +WL +C E+ D
Sbjct: 186 AE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKS 239
Query: 285 IKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
+ K+IE DL FPR+FG +V+SRV+ I++ F
Sbjct: 240 FRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273
>pdb|3AGA|A Chain A, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite
Reductase From Arabidopsis Thaliana
pdb|3AGA|B Chain B, Crystal Structure Of Rcc-Bound Red Chlorophyll Catabolite
Reductase From Arabidopsis Thaliana
Length = 276
Score = 295 bits (754), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 193/274 (70%), Gaps = 21/274 (7%)
Query: 60 RKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRS 119
R+KFMEFPY S +QLMVDL+STVEN L SQLLPC LPPDV+ + N NG+A+ASL IRS
Sbjct: 6 RRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRS 65
Query: 120 GLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILD 179
G KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQSS SLVLILD
Sbjct: 66 GDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILD 125
Query: 180 LSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVD 239
L RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R SP+A M+++D
Sbjct: 126 LPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAFSPTASMLKID 185
Query: 240 TETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR---------------DGL 284
E E +L+ I+ +HV P AK+V+ +WL +C E+ D
Sbjct: 186 AE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRDKS 239
Query: 285 IKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
+ K+IE DL FPR+FG +V+SRV+ I++ F
Sbjct: 240 FRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAF 273
>pdb|2ZXK|A Chain A, Crystal Structure Of Semet-Red Chlorophyll Catabolite
Reductase
pdb|2ZXK|B Chain B, Crystal Structure Of Semet-Red Chlorophyll Catabolite
Reductase
Length = 285
Score = 287 bits (735), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 147/284 (51%), Positives = 192/284 (67%), Gaps = 21/284 (7%)
Query: 50 SSPMDSHNEGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNG 109
SS D + R+KF EFPY S +QL VDL STVEN L SQLLPC LPPDV+ + N NG
Sbjct: 5 SSXEDHDDHLRRKFXEFPYVSPTRKQLXVDLXSTVENRLQSQLLPCNLPPDVRNFNNPNG 64
Query: 110 TAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQS 169
+A+ASL IRSG KSS IDF++GSW+H ++PTG +LNITS+S +LNSST APN ++ELIQS
Sbjct: 65 SAEASLHIRSGDKSSPIDFVIGSWIHCKIPTGVSLNITSISGFLNSSTKAPNFVVELIQS 124
Query: 170 SPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVI 229
S SLVLILDL RKDLVL+PDYL+ +Y+ T LD +RQ L K+PEV PY S SL++R
Sbjct: 125 SSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNPYVSPSLFVRSAF 184
Query: 230 SPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKR-------- 281
SP+A +++D E E +L+ I+ +HV P AK+V+ +WL +C E+
Sbjct: 185 SPTASXLKIDAE------EEDKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEE 238
Query: 282 -------DGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVF 318
D + K+IE DL FPR FG +V+SRV+ I++ F
Sbjct: 239 RXELERRDKSFRRKSIEDDLDLQFPRXFGEEVSSRVVHAIKEAF 282
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
pdb|3UYJ|B Chain B, Crystal Structure Of Jmjd5 Catalytic Core Domain In
Complex With Nickle And Alpha-Kg
Length = 248
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 181 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 174 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 224
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine
Length = 235
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 181 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 161 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 211
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate
Length = 235
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 181 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 161 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 211
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
pdb|4AAP|B Chain B, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific
Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine
(Nog)
Length = 239
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 181 SPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIM 235
SP++ L+P + ++++D LEK P+ F+ + +L C++SP I+
Sbjct: 165 SPQESGALYPHDTHLLHNTSQVDVENPDLEKFPK----FAKAPFLSCILSPGEIL 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,855,634
Number of Sequences: 62578
Number of extensions: 333691
Number of successful extensions: 714
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 13
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)