Query 020870
Match_columns 320
No_of_seqs 36 out of 38
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:48:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02581 red chlorophyll catab 100.0 6E-127 1E-131 883.9 21.9 255 62-320 1-267 (267)
2 PF06405 RCC_reductase: Red ch 100.0 2E-117 4E-122 817.5 16.1 243 72-318 1-255 (255)
3 PRK13248 phycoerythrobilin:fer 98.8 7.9E-08 1.7E-12 90.3 14.4 204 75-314 17-249 (253)
4 PRK13247 dihydrobiliverdin:fer 98.8 8.4E-08 1.8E-12 89.1 14.1 194 76-313 5-226 (238)
5 PRK13249 phycoerythrobilin:fer 98.6 5.3E-07 1.2E-11 84.8 13.0 209 76-314 22-253 (257)
6 PF05996 Fe_bilin_red: Ferredo 98.6 2.2E-07 4.7E-12 85.0 8.1 203 82-314 2-225 (228)
7 PRK02816 phycocyanobilin:ferre 98.6 1.7E-06 3.8E-11 80.6 14.0 201 72-314 11-237 (243)
8 PRK13250 phycoerythrobilin:fer 98.5 1.9E-06 4.2E-11 80.7 14.0 198 76-314 7-236 (248)
9 PRK13246 dihydrobiliverdin:fer 98.1 3.9E-05 8.5E-10 71.7 12.6 189 76-314 5-226 (236)
10 PF10691 DUF2497: Protein of u 27.0 72 0.0016 25.5 3.0 24 247-274 30-53 (73)
11 KOG3838 Mannose lectin ERGIC-5 26.5 1.6E+02 0.0034 31.1 6.0 183 82-288 177-410 (497)
12 PF09792 But2: Ubiquitin 3 bin 26.4 1.8E+02 0.0039 25.4 5.6 62 95-182 79-142 (143)
13 PF06651 DUF1163: Protein of u 24.5 35 0.00077 27.5 0.8 22 72-93 5-26 (70)
14 KOG0608 Warts/lats-like serine 21.7 57 0.0012 36.4 2.0 59 168-238 699-764 (1034)
15 PF12234 Rav1p_C: RAVE protein 21.7 41 0.0009 36.2 0.9 39 250-288 511-551 (631)
16 cd07125 ALDH_PutA-P5CDH Delta( 21.5 3.4E+02 0.0074 27.7 7.3 58 203-271 21-85 (518)
17 TIGR03252 uncharacterized HhH- 21.0 1.3E+02 0.0029 27.6 3.9 19 302-320 123-141 (177)
No 1
>PLN02581 red chlorophyll catabolite reductase
Probab=100.00 E-value=5.6e-127 Score=883.93 Aligned_cols=255 Identities=62% Similarity=1.036 Sum_probs=252.7
Q ss_pred ceeeccccCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCc
Q 020870 62 KFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTG 141 (320)
Q Consensus 62 ~~~efP~ls~a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~G 141 (320)
+||||||+|+|||+||++|++++|+|||++|+||+||+||++|+|++|+|+|||++|||++||+|||||||||||+||+|
T Consensus 1 ~~~efp~~s~a~r~lm~~l~~~ve~Rlg~~l~Ps~~P~dv~~f~n~~G~a~GSl~irsG~~~S~IDf~l~SWlh~~lp~g 80 (267)
T PLN02581 1 RFIEFPKVSPAHRELMVDLASAVEARLGSLLLPSSLPPDVRSFQNQSGNAQGSLHIRSGAQGSKIDFVLGSWLHCKLPTG 80 (267)
T ss_pred CcccccCCCcchHHHHHHHHHHHHHHhccccCCccCchHHHHhcCCCCCceeEEEEecCCCCCceeEEeehhhcCCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccccCc
Q 020870 142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSS 221 (320)
Q Consensus 142 galnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~Ss 221 (320)
||+|||||++||||+||||||+||||||+||+|||||||+||||||+||||||||||||++|+|||+|+|+||+|||+|+
T Consensus 81 galnItsL~~~L~~stdaPhf~~Eliq~sptslv~~LDl~PRkDLvl~pdYl~~yYe~t~ld~~Rq~l~k~pe~~pY~S~ 160 (267)
T PLN02581 81 GALNITSLSAFLNPSTDAPHFLVELIQSSPTSLVLILDLPPRKDLVLHPDYLKTYYEDTQLDAHRQKLEKLPQVQPYVSP 160 (267)
T ss_pred ccccHHHHHhHhccCCCCCceeeeeeccCCceEEEEeccCCccccccCHHHHHHHhcccccHHHHHHHHhCcccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhc
Q 020870 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKT 289 (320)
Q Consensus 222 SLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~ 289 (320)
|||||+++|||||||+|+| ++|++++|||||++||+|+||+||++||+.|+ +|+|||++||+|+
T Consensus 161 SLyvRs~~SPTAi~~~i~~----~~~~~~~leeiv~~~i~p~a~evl~~WL~~c~~~~~~~~e~Er~~l~kRD~~Ir~k~ 236 (267)
T PLN02581 161 SLYVRSVVSPTAILVKIDC----EEGGEERLEEIVRDQVAPVAKEVLEIWLDSCACLGREMEEEERAYLEKRDRMIRSKS 236 (267)
T ss_pred cceeeeccCCceEEEEeec----CCCccccHHHHHHhhhhHHHHHHHHHHHHHhccCCccCcHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 77899999999999999999999999999998 9999999999999
Q ss_pred eeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 020870 290 IEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320 (320)
Q Consensus 290 iE~DL~snlPRlFG~EvadRVv~air~~f~~ 320 (320)
||+||++|||||||||||||||++|||+|++
T Consensus 237 iE~Dl~~nlprlFGqevadRvv~air~~~~~ 267 (267)
T PLN02581 237 VEVDLSSNMPRLFGQEVADRVVAAIRKAFRV 267 (267)
T ss_pred eeechhhhhhhHhChHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 2
>PF06405 RCC_reductase: Red chlorophyll catabolite reductase (RCC reductase); InterPro: IPR009439 This family consists of several red chlorophyll catabolite reductase (RCC reductase) proteins. Red chlorophyll catabolite (RCC) reductase (RCCR) and pheophorbide (Pheide) a oxygenase (PaO) catalyse the key reaction of chlorophyll catabolism, porphyrin macrocycle cleavage of Pheide a to a primary fluorescent catabolite (pFCC) [].; PDB: 2ZXK_A 3AGA_B 3AGC_B 2ZXL_A 3AGB_A.
Probab=100.00 E-value=1.8e-117 Score=817.52 Aligned_cols=243 Identities=60% Similarity=1.022 Sum_probs=213.4
Q ss_pred hhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCcccccceeeee
Q 020870 72 PVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSA 151 (320)
Q Consensus 72 a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~GgalnItsL~v 151 (320)
|||++|++|++++|+|||++|+||++|+||++|+|++|+|+|||++|||++||+|||||||||||++|+||++|||||++
T Consensus 1 ~~relm~~l~~~~e~rL~~~L~p~~~p~dv~~f~n~~g~a~GSl~vrsG~~~s~IDf~l~SWlh~~lP~~g~lnItsL~v 80 (255)
T PF06405_consen 1 AHRELMVDLASEVEARLGSRLLPSTVPPDVQYFSNQDGNAEGSLHVRSGAEGSPIDFMLGSWLHCKLPTGGALNITSLSV 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHTGGGB----S-HHHHEEE-TTSSEEEEEEEEEB-TTSSEEEEEEEEEEEE-TTS-EEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHhcccCCCCCChhHHHhcCCCCCceeEEEEecCCCCCceeEEEeeeeeecCCCCceeeeheeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccccCccceeeeeecc
Q 020870 152 YLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISP 231 (320)
Q Consensus 152 ~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~SsSLyiRs~~SP 231 (320)
||||+||||||+||||||+||+|||||||+||||||+||||||||||+|+||++||+||++||+|||+|+|||||+++||
T Consensus 81 ~L~~stdaPhf~~Eliq~sp~~lv~~lDl~PRkDLvl~pdYl~~yYe~t~ld~~R~~le~~pe~~pY~S~SLyvRs~~SP 160 (255)
T PF06405_consen 81 FLNPSTDAPHFLFELIQSSPTSLVFYLDLPPRKDLVLHPDYLDRYYEDTQLDKHRQLLEKLPEFQPYVSSSLYVRSVVSP 160 (255)
T ss_dssp EE-TT--S--EEEEEEESSSSEEEEEEE---SS-TTT-HHHHHHHTTTTTCHHHHHHHHHSTTEEE---S-HHHHHHS-T
T ss_pred eecccCCCCcEEEEEeecCCCcEEEEEecCcccccccCHHHHHHHhcccchhHHHHHHHhCcccCcccCcchhheeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceeeccCCCCC
Q 020870 232 SAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEIDLGSSFP 299 (320)
Q Consensus 232 TAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~DL~snlP 299 (320)
|||||+|+| ++|++++|||||++||+|+||+||++|||+|+ +|+|||++||+|+||+||+||||
T Consensus 161 TAi~~~i~~----~~g~~~~leeIv~~~i~p~A~~vl~~WL~~c~~~~~~v~e~Er~~L~~RD~~ir~~~iE~Dl~~~~p 236 (255)
T PF06405_consen 161 TAILYSIDC----EEGGEERLEEIVRDHIAPVAKEVLDIWLDSCADEAREVEEEERAALAKRDRMIRRKSIEVDLSSNLP 236 (255)
T ss_dssp T-EEEEEE-----SS--HHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSSTS-HHHHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ceEEEEecc----cccchhhHHHHHHhhhhHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhceeeeccccchh
Confidence 999999999 67999999999999999999999999999999 99999999999999999999999
Q ss_pred cccChhHHHHHHHHHHhHh
Q 020870 300 RLFGPQVASRVLGEIQKVF 318 (320)
Q Consensus 300 RlFG~EvadRVv~air~~f 318 (320)
||||||+|||||++|||+|
T Consensus 237 rlFG~evadrvv~ai~~~f 255 (255)
T PF06405_consen 237 RLFGQEVADRVVAAIRGAF 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhChHHHHHHHHHHHhhC
Confidence 9999999999999999998
No 3
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.84 E-value=7.9e-08 Score=90.26 Aligned_cols=204 Identities=18% Similarity=0.312 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC----------Ccccc
Q 020870 75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP----------TGAAL 144 (320)
Q Consensus 75 ~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP----------~Ggal 144 (320)
..+..|.+.++++ +..|-.+|.++.+=.+ .+|..+++..-++.||+-.+.| .|..+
T Consensus 17 ~fl~~l~~~l~~~---~~~p~~i~~~f~~~e~-----------~~~~~~~~~~~~~~sw~~~~~~~~R~~R~~~i~g~~L 82 (253)
T PRK13248 17 NFLKYLTNNLSKY---NCLEKKIPSEYSYKDS-----------TYGSKKSKKNVNLSTWGVTHKKRIQFARAVCINSPNY 82 (253)
T ss_pred HHHHHHHHHHHHc---CCceecCcHhhhhhhh-----------cccccccCCceEEEeeecccChHHHHHhhheecCCCC
Confidence 3467788888665 4455557888874322 1234456778889999884445 67899
Q ss_pred cceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCC-------Cccc
Q 020870 145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP-------EVRP 217 (320)
Q Consensus 145 nItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~P-------q~~P 217 (320)
+|.|..+|=+|..|-|=|++-|+.+.=.+ ..||||=|=.++- .+|.++||+...-=..+ .-+.+| +..+
T Consensus 83 qVLn~V~fP~p~yDLPiFGaDlV~~~~~~-~aIlDlqPl~~~~--~~Y~~~~~~~L~~l~~~-~~~~lP~~g~~~~e~~~ 158 (253)
T PRK13248 83 SVLNFLIIPNTIYNVPFFGVDFVSLPNSH-LLVLDFQPSLKIQ--NQYNNELLEKLIKLKNH-CHSSLPLAEKMSADVAR 158 (253)
T ss_pred eEEEEEecCCCCCCCCccceeeeccCCCc-EEEEECCccccCh--HHHHHHHHhhccchhhh-hHhhCCCCCcCcchhHh
Confidence 99999999999999999999999854444 5699999977432 37999999976543332 346889 7777
Q ss_pred ccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhh
Q 020870 218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIK 286 (320)
Q Consensus 218 Y~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR 286 (320)
||| |-.+..+... ++ |. .++|++.+-+..++-|++|++-.+ .+.++..--=
T Consensus 159 ~FS----------p~~Lf~R~~~----~~---e~-~~~ie~~~~~af~~YL~~y~~l~~~a~~~~~~~~~~i~~~Q~~Y~ 220 (253)
T PRK13248 159 FFS----------PGVIWSKLPK----EE---RS-DFLIENQLYTSFKEYLDLYLEILFESKEVNIGLQKELINGQNNYL 220 (253)
T ss_pred hCC----------CceEEEecCC----cc---cc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHH
Confidence 765 4555566654 22 22 256777779999999999999887 2222333333
Q ss_pred hhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870 287 NKTIEIDLGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 287 ~k~iE~DL~snl-PRlFG~EvadRVv~ai 314 (320)
.-..|.|++.-| -++||+|=|||.|..+
T Consensus 221 ~yqaenDpar~vL~k~FG~eWae~yI~~~ 249 (253)
T PRK13248 221 NYRRDNDPARPMLSSLFGKEFTESLINEV 249 (253)
T ss_pred HHHHHcCcHHHHHHHHcChHHHHHHHHhc
Confidence 556899999988 9999999999998753
No 4
>PRK13247 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=98.83 E-value=8.4e-08 Score=89.11 Aligned_cols=194 Identities=17% Similarity=0.235 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcccc---------CC-Cccccc
Q 020870 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE---------LP-TGAALN 145 (320)
Q Consensus 76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~---------lP-~Ggaln 145 (320)
++..|++.|+++ .+.|..+|+++++-.+ . ..+.++.+|+... += .|..+.
T Consensus 5 ~l~~l~~~I~~~---~l~~~~ip~~l~~~~~--------------~---~~~~~i~n~~~q~~~fRk~r~~~~~~G~~lq 64 (238)
T PRK13247 5 FLEELHKEIFSR---GGQSLPVPAGLEECVS--------------E---KGNAVIRSWLWQVPGFRRWRVTRLDAGDSLQ 64 (238)
T ss_pred HHHHHHHHHHHc---CCcccCCChhHhhhhc--------------c---cCceEEEeeeecCchHHHHHHHHhhcCCCcE
Confidence 577889999888 8889999999995421 2 2267888887642 22 478999
Q ss_pred ceeeeeeccCCCCCCceeeeeeeeCCCeE-EE-EeecCCccCCCCCchhHHHhhcccchHHHHHHHhhC---CCcccccC
Q 020870 146 ITSLSAYLNSSTDAPNLLIELIQSSPSSL-VL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKV---PEVRPYFS 220 (320)
Q Consensus 146 ItsL~v~L~pstDaPHfl~ElIQ~sPtsL-v~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~---Pq~~PY~S 220 (320)
|.|..+|=+|..|.|=|++-|+. .|..- .. |+||=|=. .+.+|.++||+. |..+++...+. -+.++|-
T Consensus 65 VLn~V~fP~~~yDLPifG~Dlv~-~~~~~~laAIlDlqPl~---~~~~~~~~y~~~--L~~l~~~~~~~~~~~~~~~~d- 137 (238)
T PRK13247 65 VLNSVAYPDYNYDLPLMGIDLLW-FGKKQKLVAVLDFQPLV---QDKDYLDRYFEG--LKSLKERFPDLNSEETMRFYD- 137 (238)
T ss_pred EEEEEecCCCCCCCCccceeEee-cCCCceEEEEEecCCCC---cchhhhHHHHHH--HHHHHHhhHhhcCCCCCCCcc-
Confidence 99999999999999999999998 56444 33 69999954 456999999976 56665432221 1111111
Q ss_pred ccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhh
Q 020870 221 SSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNK 288 (320)
Q Consensus 221 sSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k 288 (320)
....+||-.+..+-.. +.+.+.+-+..++-|++|++-.+ ...+.-.--=.-
T Consensus 138 ----~~~~FSp~~lf~R~~~-------------~~~~~~l~~af~~YL~~~~~~~~~a~~~~~~~~~~~i~~~Q~~Y~~y 200 (238)
T PRK13247 138 ----PNQYFSPWLLFCKGGA-------------ETATNSLPKAFSAFLKAYWQLHDNAKKITSTIEIQEVVQLQIDYDIY 200 (238)
T ss_pred ----ccccCCCceEEeeCCc-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHHHH
Confidence 1234455555555332 23455568999999999999887 111222222245
Q ss_pred ceeeccCCCC-CcccChhHHHHHHHH
Q 020870 289 TIEIDLGSSF-PRLFGPQVASRVLGE 313 (320)
Q Consensus 289 ~iE~DL~snl-PRlFG~EvadRVv~a 313 (320)
..|.|++.-| -|+||+|-|||.|..
T Consensus 201 qaenDpar~~L~~~FG~~Wae~yi~~ 226 (238)
T PRK13247 201 SAERDPAHGLFSSYFGKEWSERFLHE 226 (238)
T ss_pred HHHcCcHHHHHHHHcChHHHHHHHHh
Confidence 6789999988 999999999999865
No 5
>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.63 E-value=5.3e-07 Score=84.81 Aligned_cols=209 Identities=17% Similarity=0.256 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhc---------cccCCC-ccccc
Q 020870 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWV---------HSELPT-GAALN 145 (320)
Q Consensus 76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWL---------H~~lP~-Ggaln 145 (320)
.+..+.+.++.+ .+.|-.+|+++.+=...-++-.+ +.-....+|. |+++=. |.++.
T Consensus 22 fl~~~~~~l~~~---~l~p~~ip~~l~~~e~~~~~~~~-----------~~~i~~~~~~~~~~~fRk~r~~~~~~G~~lq 87 (257)
T PRK13249 22 FLDDAIKALSPF---QPEPYPVAEDFLQRESQTGSKSK-----------PVKVTTATWACKTEKIRQVRAACVEAGEAAS 87 (257)
T ss_pred HHHHHHHHHhhC---CCcccCCChhhhhhhcccccccC-----------cceEEEeeeccCChHHHHHHHHHhhcCCCcE
Confidence 455677777532 67788889999865432222111 1233334443 444443 78999
Q ss_pred ceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHH-HhhCCCcccccCccce
Q 020870 146 ITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLY 224 (320)
Q Consensus 146 ItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~-lek~Pq~~PY~SsSLy 224 (320)
|.|..+|=+|..|.|=|++-|+. .|..-.+.+||=|=.+- .|+|+++|++...- +.++ -+++|.--.-.+ =
T Consensus 88 VLn~V~fP~p~yDLPiFGaDlv~-~~~~~~lalDlqPl~~~--~~~~~~~y~~~L~~--~~~~~~~~lP~~g~i~~---e 159 (257)
T PRK13249 88 VLNFVINPSNRFDLPFFGADLVT-LPNGHLLALDLQPALKT--DEIHTQHVWERLMP--IFEHWQSKLPSGGPIPE---E 159 (257)
T ss_pred EEEEEecCCcCCCCCccceeeee-cCCceEEEEecCccccc--cHHHHHHHHHHHHH--HHHhhHHhCCCcCCccc---h
Confidence 99999999999999999999998 77777677999996532 58999999987732 2223 334554322111 1
Q ss_pred eeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhceeec
Q 020870 225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKTIEID 293 (320)
Q Consensus 225 iRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~iE~D 293 (320)
.+..+||-.+..+... ++++. ..|...|.+.-++-|++|++-.+ .+.+...--=.-..|.|
T Consensus 160 ~~~fFSp~~lf~Rp~~----~~e~~----~~~~~~l~~AF~~YL~~~~~l~~~a~~~~~~~~~~i~~~Q~~Y~~yqaenD 231 (257)
T PRK13249 160 AQPYFSPGFLWTRLPL----GEEGD----NLISEVIRPAFDEYLNLYLDLVEEAKPVSKERAFKLLEGQKRYTSYRAEKD 231 (257)
T ss_pred hhhcCCCceEEEecCC----ccchh----HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHcC
Confidence 1233566677777765 33222 35555569999999999999887 22222222224568999
Q ss_pred cCCCC-CcccChhHHHHHHHHH
Q 020870 294 LGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 294 L~snl-PRlFG~EvadRVv~ai 314 (320)
++.-| -|+||+|-|||.|+.+
T Consensus 232 par~vL~k~FG~eWae~yi~~v 253 (257)
T PRK13249 232 PARGMLTRFHGSEWTESYIHNV 253 (257)
T ss_pred cHHHHHHHHhCHHHHHHHHHhc
Confidence 99988 9999999999998753
No 6
>PF05996 Fe_bilin_red: Ferredoxin-dependent bilin reductase; InterPro: IPR009249 This family consists of several different but closely related proteins which include phycocyanobilin:ferredoxin oxidoreductase 1.3.7.5 from EC (PcyA), 15,16-dihydrobiliverdin:ferredoxin oxidoreductase 1.3.7.2 from EC (PebA) and phycoerythrobilin:ferredoxin oxidoreductase 1.3.7.3 from EC (PebB). Phytobilins are linear tetrapyrrole precursors of the light-harvesting prosthetic groups of the phytochrome photoreceptors of plants and the phycobiliprotein photosynthetic antennae of cyanobacteria, red algae, and cryptomonads. It is known that that phytobilins are synthesised from haem via the intermediacy of biliverdin IX alpha (BV), which is reduced subsequently by ferredoxin-dependent bilin reductases with different double-bond specificities [].; GO: 0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor, 0050897 cobalt ion binding, 0010024 phytochromobilin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3I8U_X 3AJH_A 3NB9_A 3I94_A 2DKE_A 3NB8_A 3F0M_A 3AJG_A 3I95_A 2D1E_A ....
Probab=98.56 E-value=2.2e-07 Score=84.97 Aligned_cols=203 Identities=21% Similarity=0.275 Sum_probs=121.3
Q ss_pred HHHHhhhccc--cCCCCCCcccccccccCCceeeEEE--EeeCCCCCcceeeeehhccccCCC-cccccceeeeeeccCC
Q 020870 82 STVENTLDSQ--LLPCTLPPDVQYYENQNGTAQASLQ--IRSGLKSSLIDFILGSWVHSELPT-GAALNITSLSAYLNSS 156 (320)
Q Consensus 82 s~vEaRLg~~--LlPst~P~DV~~f~n~~G~A~GSl~--irsG~~~S~IDF~l~SWLH~~lP~-GgalnItsL~v~L~ps 156 (320)
..++++++.+ |.|..+|+++.+-.+..|+..-.+. .+.+. +++= +|.++=. |..+.|.|..+|=.+.
T Consensus 2 ~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~i~n~~~q~~---~fRk-----~r~~~~~~g~~lqVL~~V~yP~~~ 73 (228)
T PF05996_consen 2 ETIEARWSSLPDLEPYPLPEELSYIESELGGERLVIENWCYQSP---KFRK-----LRLERADAGEGLQVLNCVIYPRPE 73 (228)
T ss_dssp HHHHHHHHHCTT-EEEEECCCCSEEEEETTCEEEEEEEEEEEET---TEEE-----EEEEEEEETTTEEEEEEEEEE-TT
T ss_pred hhHHHHHHHccCCeeecCChHhhhcccccchhhHHHHhhhhccc---HHHH-----HHHHHhhcCCCcEEEEEEEcCCCC
Confidence 4567777764 6688899999988876664422221 12222 2221 2333333 7789999999999999
Q ss_pred CCCCceeeeeeeeCCCe-EEE-EeecCCccCCCCCchhHHHhhcccchHHHHHH-HhhCCCcccccCccceeeeeeccce
Q 020870 157 TDAPNLLIELIQSSPSS-LVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQM-LEKVPEVRPYFSSSLYLRCVISPSA 233 (320)
Q Consensus 157 tDaPHfl~ElIQ~sPts-Lv~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~-lek~Pq~~PY~SsSLyiRs~~SPTA 233 (320)
.|.|=|++.++. .|.. .++ |+|+-|= ..+.+|.++|++. |..+++. .+..|+-+....-+ ...+||-.
T Consensus 74 ydLPiFG~Dlv~-~~~~~~~~ailDl~P~---~~~~~l~~~y~~~--L~~l~~~~~~~~~~~~~lp~w~---~~iFSp~~ 144 (228)
T PF05996_consen 74 YDLPIFGADLVA-FPGKRISAAILDLQPL---SQDRDLPEKYYSK--LAPLPEKYQELFPEPRKLPEWG---NQIFSPWC 144 (228)
T ss_dssp S---EEEEEEEE-ETTETEEEEEEEEE-S---STTSHHCHHHHHH--HHTSHHH-TT--SSBTSSSGGC---GSCS-TT-
T ss_pred CCCCcccceeee-eCCccEEEEEEeCCCC---CCcccchHHHHHH--HHHHHHHHHhhccccccCchhH---HHhCCCce
Confidence 999999999998 4545 555 8999885 5677799999874 4444422 12223322111111 11234444
Q ss_pred EEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceeeccCCCC-Cc
Q 020870 234 IMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEIDLGSSF-PR 300 (320)
Q Consensus 234 i~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~DL~snl-PR 300 (320)
+.++-.. +.+.+.+-+..++.|+.|++... ....+-.--.+...|.|++-.+ -+
T Consensus 145 lf~r~~~-------------~~~~~~~~~af~~yl~~~~~~~~~a~~~~~~~~~~~~~~~Q~~Y~~~q~~nDptr~vL~~ 211 (228)
T PF05996_consen 145 LFIRPSN-------------PEEEEQFLSAFKEYLQAYLELVEQAEPVTDPERIAERLEAQHRYCQYQAENDPTRRVLEK 211 (228)
T ss_dssp EEEEEES-------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSB-HHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred EEeeCCC-------------HHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4444222 23344458999999999999876 1122222233556788999888 99
Q ss_pred ccChhHHHHHHHHH
Q 020870 301 LFGPQVASRVLGEI 314 (320)
Q Consensus 301 lFG~EvadRVv~ai 314 (320)
.||+|-|||.+..+
T Consensus 212 ~FG~~wae~yi~~v 225 (228)
T PF05996_consen 212 AFGEEWAERYINEV 225 (228)
T ss_dssp HH-HHHHHHHHHHT
T ss_pred HhChHHHHHHHHHc
Confidence 99999999998653
No 7
>PRK02816 phycocyanobilin:ferredoxin oxidoreductase; Validated
Probab=98.55 E-value=1.7e-06 Score=80.60 Aligned_cols=201 Identities=19% Similarity=0.296 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHHhhhcc--ccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcc---------ccCC-
Q 020870 72 PVRQLMVDLVSTVENTLDS--QLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVH---------SELP- 139 (320)
Q Consensus 72 a~r~lM~~L~s~vEaRLg~--~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH---------~~lP- 139 (320)
.-.-+...|++.|+++.+. .+.|..+|+++.+=.. ..+| -...+++|++ .++=
T Consensus 11 ~~~pli~~la~~i~~~~~~~~~l~p~~l~~~l~~~~~---~~~~------------~~l~I~n~~~q~~~fRk~hle~~~ 75 (243)
T PRK02816 11 QLHPLILQLAERIRSHWQQLLDLSPYALPPDLGYIEG---KLEG------------EKLFIENECYQAPGFRKLHLELAR 75 (243)
T ss_pred hhhHHHHHHHHHHHHHHhhcCCCCcCCCChhhccccc---ccCC------------CeeEEEEeeecccchhhhheeeec
Confidence 4567889999999999986 5678999999886532 2122 2445566654 3322
Q ss_pred CcccccceeeeeeccCCCCCCceeeeeeeeCCCeE-EEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCcccc
Q 020870 140 TGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSL-VLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRPY 218 (320)
Q Consensus 140 ~GgalnItsL~v~L~pstDaPHfl~ElIQ~sPtsL-v~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY 218 (320)
.|..+.|.|..+|=+|..|.|=|++-|+. .|... ..|+||=|=.. -+..+|.+++ ++...- .-+...++|+---
T Consensus 76 ~G~~lqVLn~V~fP~~~yDlPiFGaDlv~-~~~~~slaIlDlqPl~~-~~~~~Y~~~l-~~l~~~-~f~~~r~lp~wg~- 150 (243)
T PRK02816 76 LGNGLDILHCVMFPDPRYDLPIFGADLVA-GRGGISAAIVDLSPVSR-TLPDAYIKAL-SALPKP-AFSQPRELPEWGD- 150 (243)
T ss_pred cCCCceEEEEEecCCCCCCCCccceeEee-cCCceeEEEEecCcccc-cchHHHHHHH-Hhhcch-hhhccccCCCccC-
Confidence 37899999999999999999999999998 56555 56899999661 2233777777 544221 1123444443332
Q ss_pred cCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHHH------------HHHhhhhhh
Q 020870 219 FSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAY------------LEKRDGLIK 286 (320)
Q Consensus 219 ~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~~------------L~kRD~~IR 286 (320)
.+||-.++++-.. +. ++..+-+..++-|++|++-.+. ..+..+--=
T Consensus 151 ---------~FSp~~lf~R~~~---------~~----e~~~~~~~f~~yL~~~~~~~~~a~p~~~~~~~~~~~~~Q~~Y~ 208 (243)
T PRK02816 151 ---------IFSPYCLFIRPTN---------AE----EENQFLDRVDEYLSIHCQLAIAAQPDSDSEQIIERLAGQKNYC 208 (243)
T ss_pred ---------ccCcceEEecCCC---------HH----HHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHH
Confidence 6677766666443 11 1234478889999999988771 111111112
Q ss_pred hhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870 287 NKTIEIDLGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 287 ~k~iE~DL~snl-PRlFG~EvadRVv~ai 314 (320)
....|.|++.-| -|+||+|-|||-+..+
T Consensus 209 ~~q~enDptr~vL~~~FG~~Wae~yi~~v 237 (243)
T PRK02816 209 LQQKRNDKTRRVLEKAFGPEWADRYITTV 237 (243)
T ss_pred HHHHHcCcHHHHHHHHcChHHHHHHHHhc
Confidence 345789999988 9999999999998653
No 8
>PRK13250 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=98.54 E-value=1.9e-06 Score=80.67 Aligned_cols=198 Identities=17% Similarity=0.297 Sum_probs=136.3
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC-----------Ccccc
Q 020870 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP-----------TGAAL 144 (320)
Q Consensus 76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP-----------~Ggal 144 (320)
....+.+.+..++ .+.|..+|+++.+-+.. .|+.-..-+.++.+|+++ -| .|..+
T Consensus 7 Fl~~~~~~~~~~~--~l~p~~l~~~l~~~~~~-----------~~~~~~~~~~~i~n~~~q-~~~fRk~r~~~~~~G~~l 72 (248)
T PRK13250 7 FLDYAITLLTERL--ELQPYPIPAGFERKEAM-----------TGKGKKQEEVVTTSYAFQ-SPKLRQIRAAHVQGGSAL 72 (248)
T ss_pred HHHHHHHHHhhcC--CCCCCCCchhhhhhhhh-----------ccccccCCceEEeehhhc-CcHHHHHHHHHHhcCCCc
Confidence 3445666665555 56788899999855422 232223456778888774 23 47899
Q ss_pred cceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCC--------cc
Q 020870 145 NITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPE--------VR 216 (320)
Q Consensus 145 nItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq--------~~ 216 (320)
.|.|..+|=+|..|.|=|++-|+. .|.....++||=|=.+ ...+|.++|++... .+.++..++|. ++
T Consensus 73 qVLn~V~fP~p~yDLPiFGaDlv~-~~~~~laalDlqPl~~--~~~~Y~~~~~~~l~--~~~~~~r~l~~wg~~~~~e~~ 147 (248)
T PRK13250 73 QVLNFVIFPHLNYDLPFFGADLVT-LPGGHLIALDMQPLFR--DDPAYQAKYTEPIL--PLFNAHQAHLPWGGDFPEEAK 147 (248)
T ss_pred EEEEEEecCCcCCCCCccceeeee-cCCceEEEEECCcccC--cHHHHHHHHHHhhH--HHHhhhhhcCCccccCcchhH
Confidence 999999999999999999999998 6766555599999754 12799999999654 33335555553 23
Q ss_pred cccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH--------H-H---HHhhhh
Q 020870 217 PYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA--------Y-L---EKRDGL 284 (320)
Q Consensus 217 PY~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~--------~-L---~kRD~~ 284 (320)
+|| ||-.+..+... .+ .|++.+-+..++-|++|++-.+ . + .+...-
T Consensus 148 ~~F----------Sp~~lf~Rp~~--------~~----~~e~~lf~af~~YL~~y~~~~~~a~~~~~~~~~~~i~~~Q~~ 205 (248)
T PRK13250 148 PFF----------SPAFLWTRPQE--------TE----VVETRVFEAFKDYLQAYLDFVEQAEAVTDSEQLAEILQAQLR 205 (248)
T ss_pred hhc----------CCceEEEecCC--------hh----HHHHHHHHHHHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Confidence 455 45555555432 12 3444447888999999999887 1 1 111111
Q ss_pred hhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870 285 IKNKTIEIDLGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 285 IR~k~iE~DL~snl-PRlFG~EvadRVv~ai 314 (320)
-=.-..|.|++.-| -++||+|-|||.|..+
T Consensus 206 Y~~yqaenDpar~vL~k~FG~eWae~yi~~~ 236 (248)
T PRK13250 206 YLRYRAEKDPARGMFTRFYGEEWTEEYIHGF 236 (248)
T ss_pred HHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 22456899999988 9999999999998753
No 9
>PRK13246 dihydrobiliverdin:ferredoxin oxidoreductase; Provisional
Probab=98.13 E-value=3.9e-05 Score=71.71 Aligned_cols=189 Identities=17% Similarity=0.313 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCC-----------Ccccc
Q 020870 76 LMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELP-----------TGAAL 144 (320)
Q Consensus 76 lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP-----------~Ggal 144 (320)
.+..|.+.++.+ ...|-.+|.++.... +..-+.++.+|+++ -| .|.++
T Consensus 5 fl~~l~~~l~~~---~~~~~~i~~~f~~~~-----------------~~~~~~~I~n~~~q-~~~fRk~r~~~~~~G~~l 63 (236)
T PRK13246 5 LVDFLKTNIDEL---NGHELQISKEFKEHH-----------------NKDSKYIIKNWLFS-SPEYRKWRITRLDGGKKL 63 (236)
T ss_pred HHHHHHHHHHHc---CCccccCchhHHHHh-----------------cCCCceEEEeehhc-CchHHHHHHHHhhcCCCc
Confidence 466778888666 455666778877331 11346678888764 23 47899
Q ss_pred cceeeeeeccCCCCCCceeeeeee-eCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHH--------HHhhCCCc
Q 020870 145 NITSLSAYLNSSTDAPNLLIELIQ-SSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ--------MLEKVPEV 215 (320)
Q Consensus 145 nItsL~v~L~pstDaPHfl~ElIQ-~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq--------~lek~Pq~ 215 (320)
+|.+..+|=+|..|.|=|+.-|+. +.-.-++-|+||=|= ..+.+|.++||+. |..+.+ .-.+.|+.
T Consensus 64 qVLn~V~fP~p~yDLPifG~Dlv~f~~~~~~aaIlDlqPl---~~d~~y~~~y~~~--L~~L~~~~~~~~~~~~r~~~e~ 138 (236)
T PRK13246 64 QVFNTVAYPNFKSELPILGADILWFGTSQKLLAILDYQPL---IQEKKYLEKYCSS--LGFIKKKYSAFDNNKMKNIYDS 138 (236)
T ss_pred EEEEEEecCCCCCCCCccceeeeecCCCceEEEEEeCCCc---ccchhhhHHHHHH--HHHHHHhhHhhCcccCCCCcch
Confidence 999999999999999999999988 544447778999995 5678999999987 455544 22367889
Q ss_pred ccccCcc-ceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhh
Q 020870 216 RPYFSSS-LYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDG 283 (320)
Q Consensus 216 ~PY~SsS-LyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~ 283 (320)
.+|+|+- ||+| |.+ + .|...+.+.=.+.++.+|+-.. .+.++..
T Consensus 139 ~~~FSp~~lf~R----~~~----------------~----~~~~~~~~~F~~~v~~Yl~i~~~~~~~~~~~~~~i~~~Q~ 194 (236)
T PRK13246 139 KKYFSPWVIICR----GNK----------------L----NLDRDLNNIFHSFVNNYLNINKSNPVNQFLNLEEIKINQI 194 (236)
T ss_pred HhhcCCceEEEe----cCC----------------c----cccHHHHHHHHHHHHHHHHHHHhcccCCccCHHHHHHHHH
Confidence 9999874 5666 221 1 1112223444555554444433 1122222
Q ss_pred hhhhhceeeccCCCC-CcccChhHHHHHHHHH
Q 020870 284 LIKNKTIEIDLGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 284 ~IR~k~iE~DL~snl-PRlFG~EvadRVv~ai 314 (320)
--=+-..|.|++.-| -|+||+|=|||.|..+
T Consensus 195 ~Y~~yqaenDpar~vL~k~FG~~Wae~yI~~~ 226 (236)
T PRK13246 195 KYDKYSFEKDPADKLFKSFFGEKWTKKFINKF 226 (236)
T ss_pred HHHHHHHHcCcHHHHHHHHhChHHHHHHHHhc
Confidence 222346789999988 9999999999998753
No 10
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=27.02 E-value=72 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=18.3
Q ss_pred CccccHHHHHhhcchhhHHHHHHHHHHH
Q 020870 247 GESTRLDYIITNHVHPVAKQVIGIWLNQ 274 (320)
Q Consensus 247 g~~~~leeIV~~~i~p~A~evl~~WL~~ 274 (320)
++..++|++|++-+.| +|..|||.
T Consensus 30 ~~~~TlE~lvremLRP----mLkeWLD~ 53 (73)
T PF10691_consen 30 SSGRTLEDLVREMLRP----MLKEWLDE 53 (73)
T ss_pred cccccHHHHHHHHHHH----HHHHHHHh
Confidence 4668999999777777 56678874
No 11
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.48 E-value=1.6e+02 Score=31.07 Aligned_cols=183 Identities=23% Similarity=0.331 Sum_probs=105.1
Q ss_pred HHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCC-cceeeeehhccccCCCcccccceeeeeeccCCCCCC
Q 020870 82 STVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSS-LIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAP 160 (320)
Q Consensus 82 s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S-~IDF~l~SWLH~~lP~GgalnItsL~v~L~pstDaP 160 (320)
+.--..|--...|-. ....||+| .=.+.|..|-..+ .-.|-+.- =.--||.+|.+-|..-|.=|--.-|+=
T Consensus 177 ssCqrDFRNkPyPvR--arItY~~n-----vLtv~innGmtp~d~yE~C~rv-e~~~lp~nGyFGvSAATGgLADDHDVl 248 (497)
T KOG3838|consen 177 SSCQRDFRNKPYPVR--ARITYYGN-----VLTVMINNGMTPSDDYEFCVRV-ENLLLPPNGYFGVSAATGGLADDHDVL 248 (497)
T ss_pred HHhhHHhccCCCCce--EEEEEecc-----EEEEEEcCCCCCCCCcceeEec-cceeccCCCeeeeeeccccccccccee
Confidence 333444544555555 88999988 2234445554333 11111110 012468888999998888888888888
Q ss_pred ceee----eeeeeCCCeEEEEeecCC-------------------cc--------CCCCCchhHHHhhcccchHHHHHHH
Q 020870 161 NLLI----ELIQSSPSSLVLILDLSP-------------------RK--------DLVLHPDYLQTFYESTRLDEYRQML 209 (320)
Q Consensus 161 Hfl~----ElIQ~sPtsLv~~LDl~P-------------------Rk--------DLvl~PdYL~~yYEdt~ld~~Rq~l 209 (320)
||+. |=-|--|+- ++...+ || |..-+-|-+..|||+.+...+||.+
T Consensus 249 ~FltfsL~e~~qeppqP---~~E~qe~ek~kyqeEfe~~q~elek~k~efkk~hpd~~~e~ee~~~~yEs~~~Relrqi~ 325 (497)
T KOG3838|consen 249 SFLTFSLSEPGQEPPQP---FLEMQELEKAKYQEEFEWAQLELEKRKDEFKKSHPDAQGEGEELFDLYESLGHRELRQIL 325 (497)
T ss_pred eeEEeeecCCCCCCCCc---hhhhhHHHHHHHHHHHHHHHHHHhhhHhhhccCCchhhcchhhhhhhhhccchHHHHHHH
Confidence 8863 222221211 122222 22 3444455566799999999999887
Q ss_pred hh-------------------CCCcccccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHH
Q 020870 210 EK-------------------VPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGI 270 (320)
Q Consensus 210 ek-------------------~Pq~~PY~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~ 270 (320)
|- .||.+| =+.+.|-|-+---. ..+.||.-.. --.+.+..+-+.+++.
T Consensus 326 egQn~i~~~l~ql~rql~~il~~Q~~~--------~~a~~p~asg~~p~---~~~~gG~~sq--se~d~v~k~~~~l~~q 392 (497)
T KOG3838|consen 326 EGQNAIHKQLAQLERQLDKILGPQARP--------VGALAPDASGQIPS---TPGRGGHLSQ--SENDDVAKVQALLLGQ 392 (497)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCccccC--------CcccCCcccCCCCC---CCCCCCccch--hhhhHHHHHHHHHHHH
Confidence 64 366666 12334444332111 1234433222 2234456777889999
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 020870 271 WLNQCAYLEKRDGLIKNK 288 (320)
Q Consensus 271 WL~~c~~L~kRD~~IR~k 288 (320)
|-+-=..+.+||.+++..
T Consensus 393 iremkq~v~~t~ni~~~~ 410 (497)
T KOG3838|consen 393 IREMKQLVEMTDNIVRMA 410 (497)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 988877899999998763
No 12
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=26.36 E-value=1.8e+02 Score=25.44 Aligned_cols=62 Identities=19% Similarity=0.394 Sum_probs=45.6
Q ss_pred CCCCcccccccccCCc--eeeEEEEeeCCCCCcceeeeehhccccCCCcccccceeeeeeccCCCCCCceeeeeeeeCCC
Q 020870 95 CTLPPDVQYYENQNGT--AQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPS 172 (320)
Q Consensus 95 st~P~DV~~f~n~~G~--A~GSl~irsG~~~S~IDF~l~SWLH~~lP~GgalnItsL~v~L~pstDaPHfl~ElIQ~sPt 172 (320)
+..+.+-..|.|+++. -.|++++..|. ..++.+ +.| |.|+++ .+|+.-.+.+
T Consensus 79 ~~~~~~~TT~nn~P~~~~~~g~~~~~pG~-----~y~i~~-f~C--p~g~~v------------------~ye~~~~g~t 132 (143)
T PF09792_consen 79 SGPATDSTTWNNQPSRIEDFGTFTVSPGN-----SYVINT-FPC--PAGQAV------------------SYEMSSAGDT 132 (143)
T ss_pred cCCCCCCceecCCCccCCcCcceEECCCC-----ceEeCc-EeC--CCCCEE------------------EEEEEecCCC
Confidence 5556777789986654 67999999988 455555 889 988432 3666666668
Q ss_pred eEEEEeecCC
Q 020870 173 SLVLILDLSP 182 (320)
Q Consensus 173 sLv~~LDl~P 182 (320)
+|-++-||-|
T Consensus 133 ~l~~fq~~~p 142 (143)
T PF09792_consen 133 SLSFFQDYNP 142 (143)
T ss_pred eEEEEeecCC
Confidence 9999988866
No 13
>PF06651 DUF1163: Protein of unknown function (DUF1163); InterPro: IPR009544 This entry represents the C terminus of hypothetical Arabidopsis thaliana proteins of unknown function.
Probab=24.47 E-value=35 Score=27.50 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHhhhccccC
Q 020870 72 PVRQLMVDLVSTVENTLDSQLL 93 (320)
Q Consensus 72 a~r~lM~~L~s~vEaRLg~~Ll 93 (320)
-.+++|+|+..+=|-|||++|.
T Consensus 5 Igk~Im~DIKEr~evrfGsrl~ 26 (70)
T PF06651_consen 5 IGKDIMEDIKERKEVRFGSRLF 26 (70)
T ss_pred HHHHHHHHHHHhheeeeeeeEe
Confidence 4689999999999999999986
No 14
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=21.74 E-value=57 Score=36.42 Aligned_cols=59 Identities=22% Similarity=0.414 Sum_probs=39.2
Q ss_pred eeCCCeEEEEeecCCccCCC-------CCchhHHHhhcccchHHHHHHHhhCCCcccccCccceeeeeeccceEEEEe
Q 020870 168 QSSPSSLVLILDLSPRKDLV-------LHPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRV 238 (320)
Q Consensus 168 Q~sPtsLv~~LDl~PRkDLv-------l~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~SsSLyiRs~~SPTAi~~~i 238 (320)
| .=.+|.|+|||||--|++ .-|+-|.|||=. ++-=++| ||-.-.||--=+-|--|++.-
T Consensus 699 Q-DkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIA----EltcAie-------sVHkmGFIHRDiKPDNILIDr 764 (1034)
T KOG0608|consen 699 Q-DKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIA----ELTCAIE-------SVHKMGFIHRDIKPDNILIDR 764 (1034)
T ss_pred c-cCCceEEEEeccCCccHHHHHHHhccCHHHHHHHHHH----HHHHHHH-------HHHhccceecccCccceEEcc
Confidence 5 556999999999999986 468999999942 2211222 334445665556666666543
No 15
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=21.65 E-value=41 Score=36.18 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=34.4
Q ss_pred ccHHHHHhhcchhhHHHHHHHHHHHHH--HHHHhhhhhhhh
Q 020870 250 TRLDYIITNHVHPVAKQVIGIWLNQCA--YLEKRDGLIKNK 288 (320)
Q Consensus 250 ~~leeIV~~~i~p~A~evl~~WL~~c~--~L~kRD~~IR~k 288 (320)
..+.++++++|-|.|.+.-++||.+++ .|.++|+.||.-
T Consensus 511 p~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~L 551 (631)
T PF12234_consen 511 PVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRAL 551 (631)
T ss_pred hHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHH
Confidence 567899999999999999999999999 788888887753
No 16
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=21.48 E-value=3.4e+02 Score=27.71 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=39.4
Q ss_pred HHHHHHHhhCCCcccccCccc----eeeeeeccce---EEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHH
Q 020870 203 DEYRQMLEKVPEVRPYFSSSL----YLRCVISPSA---IMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIW 271 (320)
Q Consensus 203 d~~Rq~lek~Pq~~PY~SsSL----yiRs~~SPTA---i~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~W 271 (320)
+.+|+..+|.|+..||+.-.- -...+.+|.- ++-++.+ .+.+.+++.| ..|++....|
T Consensus 21 ~~~~~~~~~~~~~~p~i~g~~~~~~~~~~v~~P~t~g~~i~~~~~------~~~~~v~~av-----~~A~~A~~~w 85 (518)
T cd07125 21 DALKAFDEKEWEAIPIINGEETETGEGAPVIDPADHERTIGEVSL------ADAEDVDAAL-----AIAAAAFAGW 85 (518)
T ss_pred HHHHHhhhcCcccCceECCEEeeCCCeEEEECCCCCCceEEEEeC------CCHHHHHHHH-----HHHHHHHHHH
Confidence 678888889999999998443 3345667763 5555554 2456666666 3567777777
No 17
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=21.04 E-value=1.3e+02 Score=27.58 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=17.0
Q ss_pred cChhHHHHHHHHHHhHhcC
Q 020870 302 FGPQVASRVLGEIQKVFTA 320 (320)
Q Consensus 302 FG~EvadRVv~air~~f~~ 320 (320)
.|+++||-|+..+-+.|+|
T Consensus 123 VG~KTAnvVL~~l~~~~~~ 141 (177)
T TIGR03252 123 FGKQKAKIFLALLGKQLGV 141 (177)
T ss_pred CCHHHHHHHHHHHHHHhCC
Confidence 5999999999999988875
Done!