Query 020870
Match_columns 320
No_of_seqs 36 out of 38
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3agc_A RED chlorophyll catabol 100.0 3E-104 1E-108 735.2 20.1 257 58-320 4-275 (276)
2 2x9o_A 15,16- dihydrobiliverdi 99.7 5.7E-17 1.9E-21 147.6 14.0 201 75-314 12-235 (244)
3 3i94_A Phycocyanobilin:ferredo 98.8 4.4E-08 1.5E-12 89.8 11.2 210 72-314 16-242 (248)
4 2g18_A Phycocyanobilin:ferredo 98.4 6.1E-07 2.1E-11 82.4 8.2 200 74-313 22-246 (253)
5 2vcl_A Cyanobacterial phycoery 98.2 5E-07 1.7E-11 82.7 2.7 185 73-314 24-228 (233)
6 1ik9_C DNA ligase IV; DNA END 16.1 45 0.0015 22.3 0.8 24 191-214 13-36 (37)
7 3u65_B TP33 protein; tetratric 16.0 3.2E+02 0.011 24.7 6.7 96 211-316 210-325 (328)
8 1sz9_A PCF11 protein; RNA poly 14.5 1.5E+02 0.005 24.4 3.7 33 254-289 32-75 (144)
9 3hlx_A Pyrroloquinoline-quinon 14.0 94 0.0032 28.1 2.6 58 252-319 108-166 (258)
10 3d9j_A RNA-binding protein 16; 12.9 5E+02 0.017 21.1 6.5 87 202-319 4-101 (145)
No 1
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=100.00 E-value=3.3e-104 Score=735.20 Aligned_cols=257 Identities=57% Similarity=0.962 Sum_probs=251.9
Q ss_pred ccccceeeccccCchhHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhcccc
Q 020870 58 EGRKKFMEFPYASGPVRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSE 137 (320)
Q Consensus 58 ~~~~~~~efP~ls~a~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~ 137 (320)
++++|||||||+|+|||++|++|+++||+|||++++||++|+||++|+|++|+|+|||++|||+++|+||||++|||||+
T Consensus 4 ~~~~~~~~fp~~~~~~r~lm~~L~~~ie~rl~~~llP~~~P~d~~~~~~~~G~a~gsl~~~sg~~~s~id~~i~SWl~~~ 83 (276)
T 3agc_A 4 GSRRKFMEFPYVSPTRKQLMVDLMSTVENRLQSQLLPCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCK 83 (276)
T ss_dssp --CCCGGGCTTSCHHHHHHHHHHHHHHHHHTTTTBCCCCCCHHHHEEECTTSSEEEEEEEEEBCTTCSEEEEEEEEEEEE
T ss_pred cchhheeeCCCCChhHHHHHHHHHHHHHHHhcCccCCcCCChhHhhhcCcCCcccceeeeccCCCCCCcceeehhhhcCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCCCccc
Q 020870 138 LPTGAALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVPEVRP 217 (320)
Q Consensus 138 lP~GgalnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~Pq~~P 217 (320)
||+||++|||+|++|||++||+|||+|||||++|+++||+|||+||||||+|||||+||||+|++|+|||+++++||++|
T Consensus 84 l~~G~al~I~nlv~yl~~~~D~Phfgidli~~g~~~ll~vLDl~PRkdLv~~~dYL~rYye~~~l~~lr~~~~~l~d~~p 163 (276)
T 3agc_A 84 IPTGVSLNITSISGFLNSSTKAPNFVVELIQSSSKSLVLILDLPHRKDLVLNPDYLKEYYQDTALDSHRQSLLKLPEVNP 163 (276)
T ss_dssp CTTSCEEEEEEEEEEECTTCCCCCEEEEEEESSSSEEEEEEECCCSSCTTTCHHHHHHHTTSSSHHHHHHHHHTSTTEEE
T ss_pred ccCccceeheeeeeecCcccCCchhhHHHHhcCCCceEEEEecCCccccccCHHHHHHHhcccccHHHHHHHHhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH---------------HHHHhh
Q 020870 218 YFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA---------------YLEKRD 282 (320)
Q Consensus 218 Y~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~---------------~L~kRD 282 (320)
|+|++||+|+++|||||||+|+| ++| ++|||||+++|.|+|+++|++||++|+ +|+|||
T Consensus 164 YfS~sLf~R~~~Spta~~~~~~~----~~g--~~l~eiv~~~l~p~~~e~L~~wl~~~~~~~~~~~~~~e~e~~~l~~rd 237 (276)
T 3agc_A 164 YVSPSLFVRSAVSPTASMLKIDA----EEE--DKLEEILRDHVSPAAKEVLEVWLERCVKEEEEKIVVGEEERMELERRD 237 (276)
T ss_dssp CCCSCHHHHHHSCTTCEEEEEEC----SSH--HHHHHHHHHTHHHHHHHHHHHHHHHTTCSSSCCCCCCHHHHHHHHHHH
T ss_pred ccChhHHhhhccCchhheeeccc----ccc--chHHHHHHHhhHHHHHHHHHHHHHHhhccCCccCCCChhHHHHHHHHH
Confidence 99999999999999999999999 454 999999999999999999999999998 899999
Q ss_pred hhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhcC
Q 020870 283 GLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFTA 320 (320)
Q Consensus 283 ~~IR~k~iE~DL~snlPRlFG~EvadRVv~air~~f~~ 320 (320)
++||+++||+||+++||||||||+|||+|++|||+|||
T Consensus 238 ~~~r~~saE~Dpa~~l~r~FG~E~sdr~l~~~~~~~~~ 275 (276)
T 3agc_A 238 KSFRRKSIEDDLDLQFPRMFGEEVSSRVVHAIKEAFGV 275 (276)
T ss_dssp HHHHHHHHHHHTTTTHHHHHCHHHHHHHHHHHHHHHTC
T ss_pred HHHHhhhcccCchhchHhhhCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999986
No 2
>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}
Probab=99.72 E-value=5.7e-17 Score=147.56 Aligned_cols=201 Identities=18% Similarity=0.234 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccccCCCcccccceeeeeecc
Q 020870 75 QLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHSELPTGAALNITSLSAYLN 154 (320)
Q Consensus 75 ~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~~lP~GgalnItsL~v~L~ 154 (320)
-++..|+..|++| .+.|..+|+++++..+..+++...-.+++++ +++ -+|+|+-. + |..+.|.|.++|-+
T Consensus 12 p~l~~l~~~i~~~---~l~p~~~~~~l~~~~~~~~~~~i~n~~y~~~---~fR-k~r~~~~~--~-g~~lqVLh~V~fP~ 81 (244)
T 2x9o_A 12 SFLNELHSDITKR---GGSPLPLPEGLEECRSSKSSSVIQSWLWDVP---GFR-RWRVTRLD--A-GDSLQVFNSVAYPD 81 (244)
T ss_dssp HHHHHHHHHHHHT---TCEEECCCTTSSEEECTTTCCEEEEEEEECT---TEE-EEEEEEEE--E-TTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHc---CCccCCCChHhhhhhcCCCceEEEEEEecCc---hHh-HHHHHHhc--c-CCCcEEEEEEeccC
Confidence 4678899999998 6667778899999999888899999999999 999 88888887 3 56899999999999
Q ss_pred CCCCCCceeeeeee-eCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHHHHH------hhCCC--cccccCcc-ce
Q 020870 155 SSTDAPNLLIELIQ-SSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQML------EKVPE--VRPYFSSS-LY 224 (320)
Q Consensus 155 pstDaPHfl~ElIQ-~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~l------ek~Pq--~~PY~SsS-Ly 224 (320)
|+.|.|+|++.|+. ++...++.++||-|.. .+.+|.++||+.. ..++++. .++|. ..+|+|+. ||
T Consensus 82 ~~ydlPiFG~Dlv~~~~~~~l~AilDlqP~~---~d~~y~~~Y~~~L--~~l~~~~~~~~~~~~~~~~e~~~~FSp~~lf 156 (244)
T 2x9o_A 82 YNYDHPLMGVDLLWFGARQKLVAVLDFQPLV---QDKDYLDRYFSGL--KELNQRFPDLNGEETMRSFDPNQYFSSWLLF 156 (244)
T ss_dssp TTCCCCEEEEEEEEEGGGTEEEEEEEEECSC---CCHHHHHHHCHHH--HHHHHHCTTC--CCCCSSSCTTSSCCTTCEE
T ss_pred CCCCCCeehhheeccCCCceEEEEEEcCCCC---ChhhchHHHHHHH--HHHHHHHHhhcCccCCChhhhHhhcCCceEE
Confidence 99999999999984 2354565599999984 3469999999854 4444432 23444 67899998 99
Q ss_pred eeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH------------HHHHhhhhhhhhceee
Q 020870 225 LRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA------------YLEKRDGLIKNKTIEI 292 (320)
Q Consensus 225 iRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~------------~L~kRD~~IR~k~iE~ 292 (320)
+| .. + +.+.+.+-+..++-|++|+++.+ .+.+++.-..+...|.
T Consensus 157 ~R------------~~-------~-----~~~~~~~~~af~~yL~~~l~~~~~a~p~~~~~~~~~i~~~Q~~Y~~~qaen 212 (244)
T 2x9o_A 157 CR------------GG-------A-----EQADLSLPKAFSAFLKAYWDLHDNAKSIPSTIPPEEVKNLQDKYDIYSAER 212 (244)
T ss_dssp EE------------EC-------H-----HHHHHTHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred Ee------------CC-------c-----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 99 11 0 34456668999999999999988 6677899999999999
Q ss_pred ccCCCC-CcccChhHHHHHHHHH
Q 020870 293 DLGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 293 DL~snl-PRlFG~EvadRVv~ai 314 (320)
|++..| -|+||+|-|||.|+.+
T Consensus 213 Dpar~vl~~~FG~ewae~yi~~~ 235 (244)
T 2x9o_A 213 DPAHGLFTSHFGKDWSNRFLHEF 235 (244)
T ss_dssp CSCHHHHHHHHCHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCHHHHHHHHHHc
Confidence 999998 9999999999998753
No 3
>3i94_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich, enzyme-substrate analog complex; HET: BL3; 1.04A {Synechocystis SP} PDB: 2dke_A 2d1e_A* 3i8u_X* 3i95_A* 3f0l_A* 3f0m_A* 4eod_A* 4eoe_A* 3f0j_A* 3f0k_A* 3nb8_A* 3nb9_A* 3ajg_A* 3ajh_A* 4eoc_A*
Probab=98.76 E-value=4.4e-08 Score=89.80 Aligned_cols=210 Identities=19% Similarity=0.271 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHHHHhhhcc-ccCCCCCCcccccccccCCceeeEEEEee-CCCCCcceeeeehhccccCC-Cccccccee
Q 020870 72 PVRQLMVDLVSTVENTLDS-QLLPCTLPPDVQYYENQNGTAQASLQIRS-GLKSSLIDFILGSWVHSELP-TGAALNITS 148 (320)
Q Consensus 72 a~r~lM~~L~s~vEaRLg~-~LlPst~P~DV~~f~n~~G~A~GSl~irs-G~~~S~IDF~l~SWLH~~lP-~GgalnIts 148 (320)
..--+...|+..|+++.+. .|.|..+|+++.+-.+..|+. .+.|++ .-++.+++= +|.+.= .|..+.|.|
T Consensus 16 ~~~pli~~La~~i~~~~~~~~l~p~~ip~~l~~~~~~~~~~--~~~i~n~~yq~~~fRk-----~r~~~~~~G~~lqVLn 88 (248)
T 3i94_A 16 TLNPMIQQLALAIAASWQSLPLKPYQLPEDLGYVEGRLEGE--KLVIENRCYQTPQFRK-----MHLELAKVGKGLDILH 88 (248)
T ss_dssp GSCHHHHHHHHHHHHHHTTSCCEECCCGGGCCCEEECSSSC--CEEEEEEEEECSSEEE-----EEEEEEEETTTEEEEE
T ss_pred ccChHHHHHHHHHHHHHhcCCCeecCCchhhhhhhcccCCC--ccEEEEEeecCchHHH-----HHHHHhhcCCCcEEEE
Confidence 4456788899999998775 344888999998876533221 122221 111112221 222222 478999999
Q ss_pred eeeeccCCCCCCceeeeeeeeCCCe-EEEEeecCCccCCCCCchhHHHhhcccchHHHHH-HHhhCCCcccccCccceee
Q 020870 149 LSAYLNSSTDAPNLLIELIQSSPSS-LVLILDLSPRKDLVLHPDYLQTFYESTRLDEYRQ-MLEKVPEVRPYFSSSLYLR 226 (320)
Q Consensus 149 L~v~L~pstDaPHfl~ElIQ~sPts-Lv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq-~lek~Pq~~PY~SsSLyiR 226 (320)
..+|=++..|.|=|++-|+. +|.. ++.++|+-|=.+ +.+|.++|++.. ..+++ .+.+.-+..|+-
T Consensus 89 ~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~~---d~~y~~~Y~~~l--~~l~~~~f~~~r~l~~wg------- 155 (248)
T 3i94_A 89 CVMFPEPLYGLPLFGCDIVA-GPGGVSAAIADLSPTQS---DRQLPAAYQKSL--AELGQPEFEQQRELPPWG------- 155 (248)
T ss_dssp EEEEECGGGTCCEEEEEEEE-ETTEEEEEEEEEECCST---TSCCCHHHHHHH--HHTCCCCCSSBCCCCGGG-------
T ss_pred EEEccCCCCCCCccceeEec-cCCceEEEEEECCCCCC---cccchHHHHHHH--HHhchhhhcCcccCCchh-------
Confidence 99999999999999999999 5545 468999999544 677888888762 22211 111111112221
Q ss_pred eeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhceeeccC
Q 020870 227 CVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKTIEIDLG 295 (320)
Q Consensus 227 s~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~iE~DL~ 295 (320)
..+||-.++++-.. ++ -+ +.+....++-+++|++... ...++..---+...|.|++
T Consensus 156 ~iFSp~~lf~Rp~~--------~e-e~----~~f~~~~~~Yl~~~~~~~~~a~p~~~~~~~~~~~~Q~~Y~~~qaenDpa 222 (248)
T 3i94_A 156 EIFSEYCLFIRPSN--------VT-EE----ERFVQRVVDFLQIHCHQSIVAEPLSEAQTLEHRQGQIHYCQQQQKNDKT 222 (248)
T ss_dssp GGSCTTCEEECCCS--------HH-HH----HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhCCCceEEecCCC--------HH-HH----HHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHhCcH
Confidence 25788777777221 11 11 3336777999999999887 2233333344678899999
Q ss_pred CCC-CcccChhHHHHHHHHH
Q 020870 296 SSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 296 snl-PRlFG~EvadRVv~ai 314 (320)
.-| -|.||+|-|||.|+.+
T Consensus 223 r~vL~~~FG~eWae~yi~~~ 242 (248)
T 3i94_A 223 RRVLEKAFGEAWAERYMSQV 242 (248)
T ss_dssp HHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHh
Confidence 988 9999999999998753
No 4
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=98.40 E-value=6.1e-07 Score=82.44 Aligned_cols=200 Identities=16% Similarity=0.202 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhhhc--cccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccc---------cCC-Cc
Q 020870 74 RQLMVDLVSTVENTLD--SQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHS---------ELP-TG 141 (320)
Q Consensus 74 r~lM~~L~s~vEaRLg--~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~---------~lP-~G 141 (320)
..++..|++.++.+++ ..|.|..+|+++.+-.+..|+.. ..+++|.++ +.= .|
T Consensus 22 ~p~l~~l~~~i~~~~~~~~~l~p~~lp~~l~~~~~~~~~~~---------------l~i~n~~yq~~~fRk~r~e~~~~G 86 (253)
T 2g18_A 22 HPLIRQLADCIEEVWHQHLDLSPYHLPAELGYVEGRLEGEK---------------LTIENRCYQTPQFRKMHLELAKVG 86 (253)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCEECCCCGGGSEEEEEETTEE---------------EEEEEEEEECSSEEEEEEEEEEET
T ss_pred cHHHHHHHHHHHHHHhccCCCeeccCchHHhhhhcccCCCc---------------eEEEEeeeecchhhhhHHhhhhcC
Confidence 4678899999999988 46679999999977665332222 334444332 211 37
Q ss_pred ccccceeeeeeccCCCCCCceeeeeeeeCCCeEEEEeecCCccCCCCCchhHHHhhcccchHHHH-HHHhhCCCcccccC
Q 020870 142 AALNITSLSAYLNSSTDAPNLLIELIQSSPSSLVLILDLSPRKDLVLHPDYLQTFYESTRLDEYR-QMLEKVPEVRPYFS 220 (320)
Q Consensus 142 galnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~~LDl~PRkDLvl~PdYL~~yYEdt~ld~~R-q~lek~Pq~~PY~S 220 (320)
..+.|.|..+|=+++.|.|=|++.|+.....-.++++|+=|=.+ +-+|.++|++.. ..++ ..+.+.-+..+|-
T Consensus 87 ~~lqVLn~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlqPl~~---d~~~~~~Y~~~L--~~L~~~~f~~~r~lp~wg- 160 (253)
T 2g18_A 87 NMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAAIADLSPVHL---DRTLPESYNSAL--TSLNTLNFSQPRELPEWG- 160 (253)
T ss_dssp TTEEEEEEEEEECTTSCCCEEEEEEEEETTEEEEEEEEEECSST---TCCCCHHHHHHH--HHSCCCCCSSBCCCCTTG-
T ss_pred CCcEEEEEEEcCCCCCCCCeeeeeeeccCCceEEEEEECCCCCC---cccchHHHHHHH--HhhccccccccccCCchh-
Confidence 89999999999999999999999999844433446999977432 345666665432 2221 1111111112222
Q ss_pred ccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhc
Q 020870 221 SSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKT 289 (320)
Q Consensus 221 sSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~ 289 (320)
..+||-.+.++.... +| . +.. -...++-|++|++.+. .+.+.-.---+..
T Consensus 161 ------~iFSp~~lf~Rp~~~-------ee-~-~aF----~~~~~~yL~~~~~~~~~a~~~~~~~~~~i~~~Q~~Y~~~q 221 (253)
T 2g18_A 161 ------NIFSDFCIFVRPSSP-------EE-E-AMF----LGRVREFLQVHCQGAIAASPVSAEQKQQILAGQHNYCSKQ 221 (253)
T ss_dssp ------GGSCTTCEEECCCSH-------HH-H-HHH----HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ------hhcCcceEEeccCch-------HH-H-HHH----HHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHH
Confidence 257887777776541 11 1 111 1224455555554444 2333333344567
Q ss_pred eeeccCCCC-CcccChhHHHHHHHH
Q 020870 290 IEIDLGSSF-PRLFGPQVASRVLGE 313 (320)
Q Consensus 290 iE~DL~snl-PRlFG~EvadRVv~a 313 (320)
.|.|++--| -+.||+|-|||.|..
T Consensus 222 aenDpar~vL~~~FG~ewae~yi~~ 246 (253)
T 2g18_A 222 QQNDKTRRVLEKAFGVDWAENYMTT 246 (253)
T ss_dssp HHHCTHHHHHHHHHCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHcCHHHHHHHHHh
Confidence 788998777 999999999999865
No 5
>2vcl_A Cyanobacterial phycoerythrobilin; cyanophages, biliverdin IXA, oxidoreductase, phycobilin reductase, phycobilin synthesis; 1.55A {Prochlorococcus phage p-ssm2} PDB: 2vck_A 2vgr_A* 2x9i_A* 2x9j_A*
Probab=98.19 E-value=5e-07 Score=82.67 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHhhhccccCCCCCCcccccccccCCceeeEEEEeeCCCCCcceeeeehhccc---------cCCCccc
Q 020870 73 VRQLMVDLVSTVENTLDSQLLPCTLPPDVQYYENQNGTAQASLQIRSGLKSSLIDFILGSWVHS---------ELPTGAA 143 (320)
Q Consensus 73 ~r~lM~~L~s~vEaRLg~~LlPst~P~DV~~f~n~~G~A~GSl~irsG~~~S~IDF~l~SWLH~---------~lP~Gga 143 (320)
-..++..|+..+ ..|.|..+|+++.+=. |+. ...+-.+.+|+++ ++=.|..
T Consensus 24 ~~p~i~~l~~~i-----~~L~p~~l~~~l~~~e---~~~------------~~~~~~i~n~~y~s~~fRK~r~~~~~g~~ 83 (233)
T 2vcl_A 24 WQNYIDALFETF-----PQLEISEVWAKWDGGN---VTK------------DGGDAKLTANIRTGEHFLKAREAHIVDPN 83 (233)
T ss_dssp THHHHHHHHHHC-----TTCEEEEEEEEEEECC--------------------CCEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred HHHHHHHHHHhc-----cCCcccCCchHhcccc---ccc------------CCCceEEEehhhcCcHHHHHHHHHhcCCC
Confidence 445666677666 3788888999887543 221 2245566666543 3334889
Q ss_pred ccceeeeeeccCCCCCCceeeeeeeeCCCeEEE-EeecCCccCCCCCchhHHHhhcccchHHHHHHHhhCC---Cccccc
Q 020870 144 LNITSLSAYLNSSTDAPNLLIELIQSSPSSLVL-ILDLSPRKDLVLHPDYLQTFYESTRLDEYRQMLEKVP---EVRPYF 219 (320)
Q Consensus 144 lnItsL~v~L~pstDaPHfl~ElIQ~sPtsLv~-~LDl~PRkDLvl~PdYL~~yYEdt~ld~~Rq~lek~P---q~~PY~ 219 (320)
+.|.|..+|=+|..|.|=|++-|+. .|....+ ++|+-|=. ++|++... .+.. -+++| +..+||
T Consensus 84 lqVLn~V~fP~~~yDLPiFG~Dlv~-~~~~~~lailDlqPl~---------~~Y~~~L~--~Lp~-~~~lp~fye~~~~F 150 (233)
T 2vcl_A 84 SDIYNTILYPKTGADLPCFGMDLMK-FSDKKVIIVFDFQHPR---------EKYLFSVD--GLPE-DDGKYRFFEMGNHF 150 (233)
T ss_dssp EEEEEEEEEECBSSCCCEEEEEEEE-EETTEEEEEEEEECSS---------TTCCCCCT--TSCC-CCSSSCCSCTTSSC
T ss_pred CeEEEEEecCCCCCCCCccceeeec-cCCceEEEEEeCCccH---------HHHHHHHh--cCCC-CCCCCCccchhhcc
Confidence 9999999999999999999999997 5555554 99998855 67776432 2211 46788 899999
Q ss_pred CccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHHH------HHHhhhhhhhhceeec
Q 020870 220 SSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAY------LEKRDGLIKNKTIEID 293 (320)
Q Consensus 220 SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~~------L~kRD~~IR~k~iE~D 293 (320)
|+-||+| | + +. +.+...+ +..++-|+.|++.+.. +.++..--=+...|.|
T Consensus 151 Sp~lf~R----p--------~----~~-------~e~~~~l-~af~~YL~~y~~~~~~a~p~~~i~~~Q~~Y~~~q~enD 206 (233)
T 2vcl_A 151 SKNIFVR----Y--------C----KP-------DEVDQYL-DTFKLYLTKYKEMIDNNKPVGEDTTVYSDFDTYMTELD 206 (233)
T ss_dssp CTTCEEE----E--------E----CG-------GGGGGGH-HHHHHHHHHHHHHHHHHCCCBCCGGGGHHHHHHHHHC-
T ss_pred CCCeEEe----e--------C----CH-------HHHHHHH-HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhC
Confidence 9999999 1 1 10 2344555 7778899999987771 1111111223457889
Q ss_pred cCCCC-CcccChhHHHHHHHHH
Q 020870 294 LGSSF-PRLFGPQVASRVLGEI 314 (320)
Q Consensus 294 L~snl-PRlFG~EvadRVv~ai 314 (320)
++.-+ -+.||+|-|||.+..+
T Consensus 207 par~vL~~~FG~eWae~yi~~~ 228 (233)
T 2vcl_A 207 PVRGYMKNKFGEGRSEAFVNDF 228 (233)
T ss_dssp -CCHHHHHHHCHHHHHHHHHHT
T ss_pred cHHHHHHHHcCHHHHHHHHHHc
Confidence 99887 9999999999998753
No 6
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=16.10 E-value=45 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.434 Sum_probs=19.9
Q ss_pred hhHHHhhcccchHHHHHHHhhCCC
Q 020870 191 DYLQTFYESTRLDEYRQMLEKVPE 214 (320)
Q Consensus 191 dYL~~yYEdt~ld~~Rq~lek~Pq 214 (320)
.|=+-|.+|+..+.+|..|.+.+.
T Consensus 13 ~yGDSY~rd~t~~eLk~il~~m~~ 36 (37)
T 1ik9_C 13 CYGDSYFIDTDLNQLKEVFSGIKN 36 (37)
T ss_dssp TTSCBSSSCCCHHHHHHHHHTCC-
T ss_pred cccccccCcCCHHHHHHHHHHccc
Confidence 366789999999999999988743
No 7
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=15.99 E-value=3.2e+02 Score=24.66 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=51.9
Q ss_pred hCCCcccccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhhhhhhhhce
Q 020870 211 KVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCAYLEKRDGLIKNKTI 290 (320)
Q Consensus 211 k~Pq~~PY~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~~L~kRD~~IR~k~i 290 (320)
++-|+++|++..-+ ..+|..+++.-+. =++=.+...++|++-.........+.|.+.-+ ..+++ ++.+++
T Consensus 210 ~~~Ev~ky~~~~~h---~~~~~~~~~n~~~----w~~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~--~~~~~-l~~~Gv 279 (328)
T 3u65_B 210 GFYRYISYALDTKI---CPAVIGMLISDGS----WARIPSRYHDAMLQAATRVRQRLANNLETLDR--ECSNN-IQKAGV 279 (328)
T ss_dssp CGGGGCCEEECSCC---EEEEEEEEEEHHH----HTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHTTC
T ss_pred chhhcCcEEEEcCc---cccceEEEEcHHH----HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHCCC
Confidence 56788899887654 3445566655443 23344555567755444444444444443332 11222 344555
Q ss_pred ee-ccC-------------------CCCCcccChhHHHHHHHHHHh
Q 020870 291 EI-DLG-------------------SSFPRLFGPQVASRVLGEIQK 316 (320)
Q Consensus 291 E~-DL~-------------------snlPRlFG~EvadRVv~air~ 316 (320)
++ +++ ..+...+|+|+-|++.+.+.+
T Consensus 280 ~v~~~~~e~~~~~~~~~~~v~~~~~~~~~~~~g~~l~~~~~~~~~~ 325 (328)
T 3u65_B 280 SIVHLTPQEIQEWRTEFAADVKRIQARLPGMLNMTLYEKIKHLLYS 325 (328)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHHHHHSTTSBCHHHHHHHHHHHHC
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHH
Confidence 44 221 034456788988888888765
No 8
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=14.53 E-value=1.5e+02 Score=24.41 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHhhcchhhHHHHHHHHHHHHH-----------HHHHhhhhhhhhc
Q 020870 254 YIITNHVHPVAKQVIGIWLNQCA-----------YLEKRDGLIKNKT 289 (320)
Q Consensus 254 eIV~~~i~p~A~evl~~WL~~c~-----------~L~kRD~~IR~k~ 289 (320)
.+-.+|+. -|+++++.|-+++. ||. |-++|+.+
T Consensus 32 ~~a~~~~~-~a~~Iv~~i~~~i~k~~p~~KL~~LYL~--DsIvkN~g 75 (144)
T 1sz9_A 32 KLAEENIS-CAQYFVDAIESRIEKCMPKQKLYAFYAL--DSICKNVG 75 (144)
T ss_dssp HHHHHTGG-GHHHHHHHHHHHHHHSCHHHHHHHHHHH--HHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHHhccCCHhhHHHHHHHH--HHHHHhcc
Confidence 34555654 79999999999998 666 99999865
No 9
>3hlx_A Pyrroloquinoline-quinone synthase; PQQC, PQQ biosynthesis, oxidase, complex, all helical, oxido; HET: PQQ; 1.30A {Klebsiella pneumoniae subsp} SCOP: a.132.1.4 PDB: 3hml_A* 1otv_A 3hnh_A* 1otw_A*
Probab=14.02 E-value=94 Score=28.14 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=40.5
Q ss_pred HHHHHhhc-chhhHHHHHHHHHHHHHHHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhc
Q 020870 252 LDYIITNH-VHPVAKQVIGIWLNQCAYLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 319 (320)
Q Consensus 252 leeIV~~~-i~p~A~evl~~WL~~c~~L~kRD~~IR~k~iE~DL~snlPRlFG~EvadRVv~air~~f~ 319 (320)
-||+.... +.|.++..++-+++.|. +.+...=+++.+.-+|++++....+..+++.++
T Consensus 108 ~eel~~~~~~~P~t~~~vdaY~~~a~----------~~s~~e~vAA~L~E~~~p~i~~~r~~~~~~~y~ 166 (258)
T 3hlx_A 108 RDDLLSERHVLPGVRFAVDAYLNFAR----------RACWQEAACSSLTELFAPQIHQSRLDSWPQHYP 166 (258)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHH----------HSCHHHHHHGGGGGGTHHHHHHHHHHHHHHHCT
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHHHHHHHHHhhcHHHhCC
Confidence 34555444 68888888888888754 222222334445799999999999999998765
No 10
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=12.90 E-value=5e+02 Score=21.06 Aligned_cols=87 Identities=13% Similarity=0.313 Sum_probs=52.7
Q ss_pred hHHHHHHHhhCCCcccccCccceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH-----
Q 020870 202 LDEYRQMLEKVPEVRPYFSSSLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA----- 276 (320)
Q Consensus 202 ld~~Rq~lek~Pq~~PY~SsSLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~----- 276 (320)
++.+.+.|+.+.+.+|.+|.+- | ..|-.+..+|+. -|+.+++.|.+++.
T Consensus 4 v~~f~~~L~~L~~~k~~~S~~~--------------I-----------~~LT~~a~~~~~-~~~~IV~~~~~~i~k~~~~ 57 (145)
T 3d9j_A 4 VKTFNSELYSLNDYKPPISKAK--------------M-----------TQITKAAIKAIK-FYKHVVQSVEKFIQKCKPE 57 (145)
T ss_dssp HHHHHHHHHGGGGSCSSCCHHH--------------H-----------HHHHHHHHHTGG-GHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHhccCCCcHHH--------------H-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHhCCcc
Confidence 5677778888888886677542 2 223234445553 67899999988888
Q ss_pred ------HHHHhhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHhHhc
Q 020870 277 ------YLEKRDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQKVFT 319 (320)
Q Consensus 277 ------~L~kRD~~IR~k~iE~DL~snlPRlFG~EvadRVv~air~~f~ 319 (320)
||+ |.++|+-.-+..-. .--|+++.+..++.+++.+|.
T Consensus 58 ~KL~~LYL~--DsIvrn~~~k~~~~---~~~f~~~F~~~L~~~f~~~~~ 101 (145)
T 3d9j_A 58 YKVPGLYVI--DSIVRQSRHQFGQE---KDVFAPRFSNNIISTFQNLYR 101 (145)
T ss_dssp GHHHHHHHH--HHHHHHHHHHHCTT---TCSHHHHHHHHHHHHHHHHTS
T ss_pred ceeehhhhh--HHHHHHhhhhcCCc---cccHHHHHHHHHHHHHHHHHh
Confidence 443 66666554432100 113666666777777666553
Done!