Query 020870
Match_columns 320
No_of_seqs 36 out of 38
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 09:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020870.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020870hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gsua1 a.45.1.1 (A:85-217) Cl 33.2 3 0.00022 30.9 -0.9 41 190-233 87-128 (133)
2 d2c4ja1 a.45.1.1 (A:86-218) Cl 21.6 3.5 0.00025 30.7 -2.5 35 200-234 94-129 (133)
3 d1y14b2 d.230.1.1 (B:1-80) N-t 19.4 29 0.0021 24.2 2.3 20 299-318 15-34 (80)
4 d2fhea1 a.45.1.1 (A:81-216) Cl 18.7 5.9 0.00043 29.8 -1.7 42 189-233 85-127 (136)
5 d1m6ia2 c.3.1.5 (A:264-400) Ap 17.2 73 0.0053 23.1 4.4 29 288-316 66-95 (137)
6 d1t33a2 a.121.1.1 (A:89-220) P 16.6 1.2E+02 0.0089 22.8 5.7 69 222-316 32-121 (132)
7 d2qy9a1 a.24.13.1 (A:201-284) 15.9 37 0.0027 23.6 2.2 16 302-317 40-55 (84)
8 d1gcva_ a.1.1.2 (A:) Hemoglobi 15.7 25 0.0018 26.3 1.3 28 194-221 18-45 (140)
9 d1nn5a_ c.37.1.1 (A:) Thymidyl 15.6 1.4E+02 0.01 23.0 6.0 11 171-182 124-134 (209)
10 d1tmka_ c.37.1.1 (A:) Thymidyl 15.3 26 0.0019 27.5 1.4 15 171-186 124-138 (214)
No 1
>d1gsua1 a.45.1.1 (A:85-217) Class mu GST {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.22 E-value=3 Score=30.92 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=32.8
Q ss_pred chhHHHhhcccchHHHHHHHhhCCCcccccCccceee-eeeccce
Q 020870 190 PDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYLR-CVISPSA 233 (320)
Q Consensus 190 PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~SsSLyiR-s~~SPTA 233 (320)
|+.++.| .+|.++.+.++..|.++-|+.+.-|.+ -++.|||
T Consensus 87 ~~~l~~~---P~L~~~~~~v~~~P~Ik~yl~s~~~~~~P~~~~~~ 128 (133)
T d1gsua1 87 PDCPELQ---GNLSQFLQRFEALEKISAYMRSGRFMKAPIFWYTA 128 (133)
T ss_dssp TTCGGGS---SHHHHHHHHHHTSHHHHHHHTSSSCCCCCCSCTTC
T ss_pred cchhhhC---chHHHHHHHHHhCHHHHHHHcCCCcCCCCCCCccc
Confidence 4555554 688888889999999999999988875 4778876
No 2
>d2c4ja1 a.45.1.1 (A:86-218) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.59 E-value=3.5 Score=30.69 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=27.6
Q ss_pred cchHHHHHHHhhCCCcccccCcccee-eeeeccceE
Q 020870 200 TRLDEYRQMLEKVPEVRPYFSSSLYL-RCVISPSAI 234 (320)
Q Consensus 200 t~ld~~Rq~lek~Pq~~PY~SsSLyi-Rs~~SPTAi 234 (320)
.+|.++.+.++..|.++.|+.+.-|+ +-+.+|.|+
T Consensus 94 P~L~~~~~rv~~~P~ik~yl~s~~~~~~p~~~~~a~ 129 (133)
T d2c4ja1 94 PNLKDFISRFEGLEKISAYMKSSRFLPRPVFSKMAV 129 (133)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHSTTCCCCCSSCTTCS
T ss_pred chHHHHHHHHHhCHHHHHHHhCcccCCCCCCCcccc
Confidence 57778888899999999999988777 446666653
No 3
>d1y14b2 d.230.1.1 (B:1-80) N-terminal, heterodimerisation domain of RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.40 E-value=29 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=18.5
Q ss_pred CcccChhHHHHHHHHHHhHh
Q 020870 299 PRLFGPQVASRVLGEIQKVF 318 (320)
Q Consensus 299 PRlFG~EvadRVv~air~~f 318 (320)
|.+||++.-+.+...|++-|
T Consensus 15 P~~~g~~~~~~i~~~L~~~~ 34 (80)
T d1y14b2 15 PSFFGPRMKQYLKTKLLEEV 34 (80)
T ss_dssp TTSCSTTHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHh
Confidence 99999999999999999865
No 4
>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica [TaxId: 6192]}
Probab=18.74 E-value=5.9 Score=29.77 Aligned_cols=42 Identities=21% Similarity=0.480 Sum_probs=33.0
Q ss_pred CchhHHHhhcccchHHHHHHHhhCCCcccccCcccee-eeeeccce
Q 020870 189 HPDYLQTFYESTRLDEYRQMLEKVPEVRPYFSSSLYL-RCVISPSA 233 (320)
Q Consensus 189 ~PdYL~~yYEdt~ld~~Rq~lek~Pq~~PY~SsSLyi-Rs~~SPTA 233 (320)
.|+.++.| .+|.++++.++..|.++-|+.|.-|. |-+..|.|
T Consensus 85 ~~~~l~~y---P~L~~~~~~v~~~P~Ik~yl~S~~~~~~P~~~~~a 127 (136)
T d2fhea1 85 EPHCLDHF---PNLQQFMSRIEALPSIKAYMESNRFIKWPLNGWHA 127 (136)
T ss_dssp CTTTTTTC---HHHHHHHHHHHTSHHHHHHHTSSSCCCSCSSCTTC
T ss_pred CCCcchhc---hhHHHHHHHHHhCHHHHHHHcCcccCCCCCCCCcC
Confidence 44555554 67889999999999999999887777 55777776
No 5
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.19 E-value=73 Score=23.07 Aligned_cols=29 Identities=3% Similarity=0.220 Sum_probs=21.4
Q ss_pred hceeeccCCC-CCcccChhHHHHHHHHHHh
Q 020870 288 KTIEIDLGSS-FPRLFGPQVASRVLGEIQK 316 (320)
Q Consensus 288 k~iE~DL~sn-lPRlFG~EvadRVv~air~ 316 (320)
+..-++.... |+++|++++++.+.+.+++
T Consensus 66 ~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~ 95 (137)
T d1m6ia2 66 EVIQLFPEKGNMGKILPEYLSNWTMEKVRR 95 (137)
T ss_dssp EEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred EEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence 3334455444 5999999999999888876
No 6
>d1t33a2 a.121.1.1 (A:89-220) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=16.64 E-value=1.2e+02 Score=22.78 Aligned_cols=69 Identities=9% Similarity=0.181 Sum_probs=53.2
Q ss_pred cceeeeeeccceEEEEeecccccCCCccccHHHHHhhcchhhHHHHHHHHHHHHH---------------------HHHH
Q 020870 222 SLYLRCVISPSAIMVRVDTETETGAGESTRLDYIITNHVHPVAKQVIGIWLNQCA---------------------YLEK 280 (320)
Q Consensus 222 SLyiRs~~SPTAi~~~i~~e~~~~~g~~~~leeIV~~~i~p~A~evl~~WL~~c~---------------------~L~k 280 (320)
.|+.|-..+|| +.+++|+++.+.|.......+|-+... +..+
T Consensus 32 ~l~~RE~~~PT-----------------~a~~~l~~~~i~P~~~~l~~ll~~~~G~~~~d~~~~~~~~sivGq~l~f~va 94 (132)
T d1t33a2 32 KFISREQLSPT-----------------SAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLG 94 (132)
T ss_dssp HHHHHHHHSCC-----------------HHHHHHHHHTHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccCch-----------------HHHHHHHHHHhhhHHHHHHHHHHHHHCcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887 456789999999999988888866554 6788
Q ss_pred hhhhhhhhceeeccCCCCCcccChhHHHHHHHHHHh
Q 020870 281 RDGLIKNKTIEIDLGSSFPRLFGPQVASRVLGEIQK 316 (320)
Q Consensus 281 RD~~IR~k~iE~DL~snlPRlFG~EvadRVv~air~ 316 (320)
|.-+.|+.+-+ -||++.+++|-+.|.+
T Consensus 95 r~~~l~~lgw~---------~~~~~~~~~i~~~i~~ 121 (132)
T d1t33a2 95 KETILLRTGWP---------QFDEEKAELIYQTVTC 121 (132)
T ss_dssp HHHHHHHHTCS---------SCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC---------cCCHHHHHHHHHHHHH
Confidence 88888877654 4788888888777654
No 7
>d2qy9a1 a.24.13.1 (A:201-284) Signal recognition particle receptor, FtsY {Escherichia coli [TaxId: 562]}
Probab=15.86 E-value=37 Score=23.61 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=14.5
Q ss_pred cChhHHHHHHHHHHhH
Q 020870 302 FGPQVASRVLGEIQKV 317 (320)
Q Consensus 302 FG~EvadRVv~air~~ 317 (320)
+|.++|.+|+..||+.
T Consensus 40 vG~~tt~~ii~~lk~~ 55 (84)
T d2qy9a1 40 VGVETTRKIITNLTEG 55 (84)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6999999999999974
No 8
>d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}
Probab=15.73 E-value=25 Score=26.29 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHhhcccchHHHHHHHhhCCCcccccCc
Q 020870 194 QTFYESTRLDEYRQMLEKVPEVRPYFSS 221 (320)
Q Consensus 194 ~~yYEdt~ld~~Rq~lek~Pq~~PY~Ss 221 (320)
..=+++.+.+.+.+.|++.|+.|+||+.
T Consensus 18 ~~~~~~~G~~~~~rLF~~~P~~~~~F~~ 45 (140)
T d1gcva_ 18 AKSPEAYGAECLARLFVTHPGSKSYFEY 45 (140)
T ss_dssp HHCHHHHHHHHHHHHHHHCGGGGGGCCC
T ss_pred HCCHHHHHHHHHHHHHHHCHHHHhccch
Confidence 3446777888898999999999999985
No 9
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.62 E-value=1.4e+02 Score=23.00 Aligned_cols=11 Identities=55% Similarity=0.827 Sum_probs=9.7
Q ss_pred CCeEEEEeecCC
Q 020870 171 PSSLVLILDLSP 182 (320)
Q Consensus 171 PtsLv~~LDl~P 182 (320)
| .++++||..|
T Consensus 124 P-Dl~i~Ld~~~ 134 (209)
T d1nn5a_ 124 P-DLVLFLQLQL 134 (209)
T ss_dssp C-SEEEEEECCH
T ss_pred C-ceeeeecccH
Confidence 5 8999999886
No 10
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.26 E-value=26 Score=27.50 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=8.6
Q ss_pred CCeEEEEeecCCccCC
Q 020870 171 PSSLVLILDLSPRKDL 186 (320)
Q Consensus 171 PtsLv~~LDl~PRkDL 186 (320)
| .++++||..|-..+
T Consensus 124 P-Dl~i~Ld~~~~~~~ 138 (214)
T d1tmka_ 124 P-DLTLFLSTQDVDNN 138 (214)
T ss_dssp C-SEEEEEECC-----
T ss_pred c-ceehhccccHHHHH
Confidence 5 89999998774433
Done!