BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020871
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 51/222 (22%)
Query: 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWD---PEFYDVLQ 119
S+ ++A+IFD DGV+ ++E + ++ R Q+ ++ D P F+
Sbjct: 1 SNAXVEAIIFDXDGVLFDTEKYY----------YDRRASFLGQKGISIDHLPPSFFI--- 47
Query: 120 NQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTER------YQQII 173
GG K W +N + D+ + L +++ T + Y+++I
Sbjct: 48 ----GGNTKQVW-------------ENILRDEYDKWDVSTLQEEYNTYKQNNPLPYKELI 90
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL-DCFLAGD 232
P VL++++E K+ G ++ + S++ K+ + LE R +G D L+G+
Sbjct: 91 -------FPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEE----NRLQGFFDIVLSGE 139
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274
+ K+ KP+P IY+TA K+L + L++EDS G+ A A
Sbjct: 140 EFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVAA 181
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 35/227 (15%)
Query: 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSL---NWDPEFYDVLQNQIG 123
LQ +IFD DGVI ++ HLH QA+ + + D +SL + D +LQ+
Sbjct: 5 LQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQH--- 61
Query: 124 GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEP-RP 182
GGK ++A+L K Y ++ TV P
Sbjct: 62 GGK-------------------EGDFNSQERAQL----AYRKNLLYVHSLRELTVNAVLP 98
Query: 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPS 242
G+ L+ + +A V + S + + IL +E E +K KPDP
Sbjct: 99 GIRSLLADLRAQQISVGLASVSLNAPTILA-----ALELREFFTFCADASQLKNSKPDPE 153
Query: 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289
I++ A LG+ + C+ +ED+ G+ A +GM V T Q
Sbjct: 154 IFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQ 200
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 32/218 (14%)
Query: 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKP 127
+A+IFD DGV+ ++E L+ +AY R S + D L +I G
Sbjct: 2 EAVIFDXDGVLXDTEPLYFEAYR--------RVAESYGKPYTED------LHRRIXGVPE 47
Query: 128 KMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRL 187
+ G P I D + + K + +++K PGV
Sbjct: 48 R-------EGLP---ILXEALEIKDSLENFKKRVHEEKKRVFSELLKEN-----PGVREA 92
Query: 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247
++ K+ K+A+ ++ + + L L +E++ D + GD VK KPDP IY+
Sbjct: 93 LEFVKSKRIKLALATSTPQREALERLRRL-DLEKY--FDVXVFGDQVKNGKPDPEIYLLV 149
Query: 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285
+RL + + +V EDS G++AA AG+ + S
Sbjct: 150 LERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHS 187
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGG 125
SL+A+IFD DGVI ++ H A+ ++ D +
Sbjct: 1 SLKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDXNE------------------- 41
Query: 126 KPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR-PGV 184
+++ +E S IF + K + K YQ +I T E PG+
Sbjct: 42 --RLKGISREESLESILIFGGAETKYTNAEK--QELXHRKNRDYQXLISKLTPEDLLPGI 97
Query: 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD---VKQKKPDP 241
RL+ + K K+ + S++ + IL R +D F A D + + KPDP
Sbjct: 98 GRLLCQLKNENIKIGLASSSRNAPKIL--------RRLAIIDDFHAIVDPTTLAKGKPDP 149
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279
I++TAA L +S DC +ED+ G+ A AG V
Sbjct: 150 DIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAGXFAV 187
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 39/223 (17%)
Query: 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGK 126
L+A++FD DGV+ +S H ++++ F G G
Sbjct: 23 LKAVLFDXDGVLFDSXPNHAESWHKIXKRF--------------------------GFGL 56
Query: 127 PKMRWYFKEHGWPSSTI--FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGV 184
+ Y E +STI D + I I KTE + + K+ E PG
Sbjct: 57 SREEAYXHEGRTGASTINIVSRRERGHDATEEEIKAIYQAKTEEFNKCPKA---ERXPGA 113
Query: 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL---DCFLAGDDVKQKKPDP 241
L ++ + K+ G V + + ++S++ L + F G+ + + DVK KP+P
Sbjct: 114 LEVLTKIKSEGLTPXVVTGSGQTSLLDRLNH-----NFPGIFQANLXVTAFDVKYGKPNP 168
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284
Y+ A K+ G + LV+E++ +G+QA AG+ + T
Sbjct: 169 EPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTG 211
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGD 232
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAF 160
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 161 DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLL 220
Query: 293 DAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 221 DAGADLLFPSMQTL 234
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 47/256 (18%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPE----- 113
R S + L+A++FD DGV+ S H +A++ + D S +++ D
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGL--DLSREEAYMHDGRTGAST 73
Query: 114 FYDVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQ 171
V Q ++G + ++ + E S +F++ P
Sbjct: 74 INIVFQRELGKEATQEEIESIYHE----KSILFNSYP----------------------- 106
Query: 172 IIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLA 230
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 -----EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVT 158
Query: 231 GDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD 290
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 159 AFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQV 218
Query: 291 FKDAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 219 LLDAGADLLFPSMQTL 234
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---- 131
Query: 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283
D +V KP P I++ AA +G++ + + +EDS G+QA +G +
Sbjct: 132 -FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPI---- 186
Query: 284 SSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 314
+D D I I PD S+ L+ L E+ LQ
Sbjct: 187 GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 43/254 (16%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHNGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGD 232
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAF 160
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 161 DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLL 220
Query: 293 DAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 221 DAGADLLFPSMQTL 234
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---- 131
Query: 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283
D +V KP P I++ AA +G++ + + +EDS G+QA +G +
Sbjct: 132 -FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPI---- 186
Query: 284 SSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 314
+D D I I PD S+ L+ L E+ LQ
Sbjct: 187 GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 11/152 (7%)
Query: 165 KTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223
K + Y ++I+ + PG+L+L+ + ++ K+A+ SA+ +L NL G
Sbjct: 76 KNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---- 131
Query: 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283
D +V KP P I++ AA +G++ + + +EDS G+QA +G +
Sbjct: 132 -FDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPI---- 186
Query: 284 SSTAEQDFKDAIAIYPDLSNVRLKDL-ELLLQ 314
+D D I I PD S+ L+ L E+ LQ
Sbjct: 187 GVGRPEDLGDDIVIVPDTSHYTLEFLKEVWLQ 218
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 43/254 (16%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD DGV+ S H +A++ + R +
Sbjct: 16 RGSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHAGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGD 232
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAF 160
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 161 DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLL 220
Query: 293 DAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 221 DAGADLLFPSMQTL 234
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++F+ DGV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFNMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGD 232
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAF 160
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 161 DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLL 220
Query: 293 DAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 221 DAGADLLFPSMQTL 234
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 59 RVSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNV---RCDPSSQQSLNWDPEFY 115
R S + L+A++FD +GV+ S H +A++ + R + +
Sbjct: 16 RGSHMRKKLKAVLFDMNGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTIN 75
Query: 116 DVLQNQIG--GGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQII 173
V Q ++G + ++ + E S +F++ P
Sbjct: 76 IVFQRELGKEATQEEIESIYHE----KSILFNSYP------------------------- 106
Query: 174 KSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGD 232
E PG L+ + K+ G V + + + S++ LE N GM E +
Sbjct: 107 ---EAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAF 160
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
DVK KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q
Sbjct: 161 DVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLL 220
Query: 293 DAIA--IYPDLSNV 304
DA A ++P + +
Sbjct: 221 DAGADLLFPSMQTL 234
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGDDVKQK 237
E PG L+ + K+ G V + + + S++ LE N GM E + DVK
Sbjct: 109 ERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKE---LMVTAFDVKYG 165
Query: 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIA- 296
KP+P Y+ A K+ G+ + +V+E++ +G++A +AG+ + T Q DA A
Sbjct: 166 KPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGAD 225
Query: 297 -IYPDLSNV 304
++P + +
Sbjct: 226 LLFPSMQTL 234
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQI 122
S+ ++A IFD DGVI ++ + H A+ + D +SL
Sbjct: 22 SNAMIEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLK------------- 68
Query: 123 GGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTV-EPR 181
G +M F N + ++ K+ + + K Y +I T +
Sbjct: 69 --GISRME------SLDRILEFGNKKYSFSEEEKV--RMAEEKNNYYVSLIDEITSNDIL 118
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP 241
PG+ L+ + K+ K+ + SA+ + +L N +G+ + D K KP P
Sbjct: 119 PGIESLLIDVKSNNIKIGLSSASKNAINVL---NHLGIS--DKFDFIADAGKCKNNKPHP 173
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279
I++ +AK L ++ ++C+ +ED+ G+ A A M V
Sbjct: 174 EIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSV 211
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 107/228 (46%), Gaps = 40/228 (17%)
Query: 60 VSASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQ 119
++A Q + LIFD DG+++++E L+ + + + ++ + +WD ++
Sbjct: 23 MAAPPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYD--------KKYSWD------VK 68
Query: 120 NQIGGGKPKMRWYFKEHGWPSSTIFD--NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGT 177
+ + G K+ + I D P++ ++ L+++ +T + +++ +
Sbjct: 69 SLVMG---------KKALEAAQIIIDVLQLPMSKEE------LVEESQT-KLKEVFPTAA 112
Query: 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--VK 235
+ PG +L+ + G A+ +++ +S ++ E F + GDD V+
Sbjct: 113 L--MPGAEKLIIHLRKHGIPFALATSSRSAS--FDMKTSRHKEFFSLFSHIVLGDDPEVQ 168
Query: 236 QKKPDPSIYVTAAKRLGI--SEKDCLVVEDSVIGLQAATRAGMACVIT 281
KPDP I++ AKR + + CLV ED+ G++AA AGM V+
Sbjct: 169 HGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMV 216
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 89/211 (42%), Gaps = 24/211 (11%)
Query: 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDV-----LQNQI 122
+A IFD DG I+++ A N AF R D + + N+ V L +
Sbjct: 5 KAAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEA 64
Query: 123 GGGKPKMRWY-FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR 181
G + + + K+ P + VT + +++++ + + + Q IK+G P
Sbjct: 65 GSSRESLVAFGTKDEQIPEA-------VTQTEVNRVLEVFKPYYADHCQ--IKTG---PF 112
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG-LDCFLAGDDVKQKKPD 240
PG+L L + G K+AV S +V + +E L F G D L ++KP
Sbjct: 113 PGILDLXKNLRQKGVKLAVVSNKPNEAVQVLVEEL-----FPGSFDFALGEKSGIRRKPA 167
Query: 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAA 271
P K LG+ C+ + DS I +Q A
Sbjct: 168 PDXTSECVKVLGVPRDKCVYIGDSEIDIQTA 198
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 53/224 (23%)
Query: 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGG 125
SL+ ++FD DG +I+S A + A + + + L + + D + IGGG
Sbjct: 2 SLRVILFDLDGTLIDS------AKDIALAL------EKTLKELGLEEYYPDNVTKYIGGG 49
Query: 126 KPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVE------ 179
+A L +++D E Y ++ + +E
Sbjct: 50 V---------------------------RALLEKVLKDKFREEYVEVFRKHYLENPVVYT 82
Query: 180 -PRPGVLRLMDEAKAAGKKVAVCSAATK--SSVILCLENLIGMERFEGLDCFLAGDDVKQ 236
P P + ++ K+ G K+AV S + S IL + NL G D + GD +
Sbjct: 83 KPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGY-----FDLIVGGDTFGE 137
Query: 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280
KKP P+ + + LG + L+V D+ ++A RAG +
Sbjct: 138 KKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 181
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFL---AGDD-VKQK 237
PGVL +D AAG ++A+ ++ + + E GLD L AGDD V++
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAE-------LTGLDTRLTVIAGDDSVERG 159
Query: 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV-ITYTSSTAEQ 289
KP P + + A+ LGI + C+V+ D V + AGM + ++Y S ++
Sbjct: 160 KPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDE 212
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 31/197 (15%)
Query: 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK 128
A++FD DGV++ESE + Q + + + D ++ ++ + + +D +
Sbjct: 30 AVLFDLDGVLVESEGIIAQVWQSVLAERGLHLD-LTEIAMYFTGQRFDGV---------- 78
Query: 129 MRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLM 188
+ + ++H F PP D + +T + +E LR +
Sbjct: 79 LAYLAQQHD------FVPPP----------DFLDVLETRFNAAMTGVTAIEGAAETLRAL 122
Query: 189 DEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAA 248
+AAG A+ S + + + L L + G+ G + + KP P +Y AA
Sbjct: 123 ---RAAGVPFAIGSNSERGRLHLKL-RVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAA 178
Query: 249 KRLGISEKDCLVVEDSV 265
++LGI + C+V+EDSV
Sbjct: 179 QQLGILPERCVVIEDSV 195
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP 241
P L + K G ++ + S + ++ L N + F D + G+DV KPDP
Sbjct: 92 PDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHXPDDWF---DIIIGGEDVTHHKPDP 148
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK 292
+ A RL ++ L + DS + A AG++ + T Q+F+
Sbjct: 149 EGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGXTTAQEFQ 199
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 40/261 (15%)
Query: 62 ASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQ 121
++ + + A IFD DG++I+SE L +A D + V D S + E D L +
Sbjct: 4 STPRQILAAIFDXDGLLIDSEPLWDRAELDVXASLGV--DISRRN------ELPDTLGLR 55
Query: 122 IGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPR 181
I + ++ W + + V + A+ I L++ E R
Sbjct: 56 IDX---VVDLWYARQPWNGPSRQE---VVERVIARAISLVE----------------ETR 93
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN-LIGMERFEGLDCFLAGDDVKQKKPD 240
P +L + EA A K+ + +S + LE L + + D + + + KP
Sbjct: 94 P-LLPGVREAVALCKEQGLLVGLASASPLHXLEKVLTXFDLRDSFDALASAEKLPYSKPH 152
Query: 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300
P +Y+ A +LG+ C+ +EDSV G A++A I + A+ D + +A
Sbjct: 153 PQVYLDCAAKLGVDPLTCVALEDSVNG-XIASKAARXRSIVVPAPEAQNDPRFVLA---- 207
Query: 301 LSNVRLKDL-ELLLQNVVAAS 320
NV+L L EL ++++ S
Sbjct: 208 --NVKLSSLTELTAKDLLGGS 226
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 154 QAKLIDLIQDWKTERYQQIIKSGTVE-------PRPGVLRLMDEAKAAGKKVAVCSAATK 206
+A L +++D E Y ++ + +E P P + ++ K+ G K+AV S +
Sbjct: 49 RALLEKVLKDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLE 108
Query: 207 --SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264
S IL + NL G D + GD +KKP P+ + + LG + L+V D+
Sbjct: 109 ELSKKILDILNLSGY-----FDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDT 163
Query: 265 VIGLQAATRAGMACVI 280
++A RAG +
Sbjct: 164 DADIEAGKRAGTKTAL 179
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 98/237 (41%), Gaps = 38/237 (16%)
Query: 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIG-GGKP 127
+ IFD DG + +S + + A+ +A N+ P + +IG G
Sbjct: 8 SFIFDLDGTLTDSVYQNVAAWKEALDAENI-------------PLAXWRIHRKIGXSGGL 54
Query: 128 KMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQ-QIIKSGTVEPRPGVLR 186
++ +E G + D+QA+ + ER Q QII PG +
Sbjct: 55 XLKSLSRETGXSIT----------DEQAERLSEKHAQAYERLQHQII------ALPGAVE 98
Query: 187 LMDEAKAAGKKVAVCSAATKSSVILCLENL-IGMERFEGLDCFLAGDDVKQKKPDPSIYV 245
L++ K + ++ + + L+ L + + + + DDV KPDP +++
Sbjct: 99 LLETLDKENLKWCIATSGGIDTATINLKALKLDINKIN----IVTRDDVSYGKPDPDLFL 154
Query: 246 TAAKRLGISEKDCLVVEDSVIGLQAATR--AGMACVITYTSSTAEQDFKDAIAIYPD 300
AAK++G +CLV+ D++ AA R A +++ E + A+ +Y D
Sbjct: 155 AAAKKIGAPIDECLVIGDAIWDXLAARRCKATGVGLLSGGYDIGELERAGALRVYED 211
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP 241
P +++ K+AG VA+ S + L+ ++R LD L+ DD+K KPDP
Sbjct: 108 PDAAETLEKLKSAGYIVAILSNGNDEMLQAALK-ASKLDRV--LDSCLSADDLKIYKPDP 164
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279
IY A RLG++ + V + L A + G V
Sbjct: 165 RIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTV 202
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP 241
P +++ K+AG VA+ S + L+ ++R LD L+ DD+K KPDP
Sbjct: 108 PDAAETLEKLKSAGYIVAILSNGNDEMLQAALK-ASKLDRV--LDSCLSADDLKIYKPDP 164
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279
IY A RLG++ + V + L A + G V
Sbjct: 165 RIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTV 202
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286
KP P I++ A + G+S +VVEDSV G+ A AG VI +T ++
Sbjct: 143 KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGXR-VIGFTGAS 190
>pdb|2O2X|A Chain A, Crystal Structure Of A Putative Had-Like Phosphatase
(Mll2559) From Mesorhizobium Loti At 1.50 A Resolution
Length = 218
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288
LA D +KP+P V A KRL + + L+V D + QA RAG+A A
Sbjct: 128 LAIPDHPXRKPNPGXLVEAGKRLALDLQRSLIVGDKLADXQAGKRAGLAQGWLVDGEAAV 187
Query: 289 QDFKDAIAIYPDLSNVRLKDL 309
Q AI P + L DL
Sbjct: 188 Q---PGFAIRPLRDSSELGDL 205
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP 241
PG +++ K G ++ + T + + E ++ +E + + + D KKP P
Sbjct: 97 PGARKVLIRLKELGYELGII---TDGNPVKQWEKILRLELDDFFEHVIISDFEGVKKPHP 153
Query: 242 SIYVTAAKRLGISEKDCLVVEDSVIG-LQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300
I+ A K + ++ L+V D + + A R GM V +E++ + Y
Sbjct: 154 KIFKKALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELE-----YRK 208
Query: 301 LSNVRLKDLELLLQNVVAAS 320
++ + +LE LL+ + S
Sbjct: 209 YADYEIDNLESLLEVLARES 228
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVI 280
D + G + +++KP PSI+ LG+ DC++V D++ +Q AG+ +
Sbjct: 173 FDAVVVGGEQREEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATV 229
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVI 280
D + G + K++KP PSI+ LG+ DC++V D++ +Q AG+ +
Sbjct: 163 FDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATV 219
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247
+ E K G K+A+ S + S+ + + G+ +G D L+ D V+ KPD +Y A
Sbjct: 104 LRELKRRGLKLAILSNGSPQSIDAVVSH-AGLR--DGFDHLLSVDPVQVYKPDNRVYELA 160
Query: 248 AKRLGISEKDCLVVEDSVIGLQAATRAGM-ACVITYTSSTAEQ 289
+ LG+ L V + A G C I T + E+
Sbjct: 161 EQALGLDRSAILFVSSNAWDATGARYFGFPTCWINRTGNVFEE 203
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247
+ E K G K+A+ S + S+ + + G+ +G D L+ D V+ KPD +Y A
Sbjct: 104 LRELKRRGLKLAILSNGSPQSIDAVVSH-AGLR--DGFDHLLSVDPVQVYKPDNRVYELA 160
Query: 248 AKRLGISEKDCLVVEDSVIGLQAATRAGM-ACVITYTSSTAEQ 289
+ LG+ L V + A G C I T + E+
Sbjct: 161 EQALGLDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEE 203
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288
++K KP+P I+ + GI K+ ++DS I + A G++ TYT E
Sbjct: 168 EMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIS---TYTPKAGE 220
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE 288
++K KP+P I+ + GI K+ ++DS I + A G++ TYT E
Sbjct: 168 EMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGIS---TYTPKAGE 220
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGM 276
++ DD ++KPDP +TA +++ ++ ++ L + DSV Q A A +
Sbjct: 129 ISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANV 176
>pdb|1QYI|A Chain A, X-Ray Structure Of Q8nw41 Northeast Structural Genomics
Consortium Target Zr25
Length = 384
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 70/174 (40%), Gaps = 30/174 (17%)
Query: 169 YQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228
YQ+II + P V L+++ K AG ++ + + + ++ ENL + FE D
Sbjct: 209 YQEII----LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEA-DFI 263
Query: 229 LAGDDVKQK-----------KPDPSIYVTAA-------------KRLGISEK-DCLVVED 263
DV + KP+P Y+ A K+ I K D +V D
Sbjct: 264 ATASDVLEAENXYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGD 323
Query: 264 SVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317
S+ L +A + G + T T + + A + D L +L +L N++
Sbjct: 324 SLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNLL 377
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 182 PGVLRLMDEAKAAGK-KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPD 240
PG ++L + A K K AV ++ T+ +++ ++R E F+ +DVKQ KP
Sbjct: 117 PGAVKLCNALNALPKEKWAVATSGTRDMAKKWF-DILKIKRPE---YFITANDVKQGKPH 172
Query: 241 PSIYVTAAKRLG--ISEKD-----CLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF 291
P Y+ LG I+E+D +V ED+ A C I ++T + DF
Sbjct: 173 PEPYLKGRNGLGFPINEQDPSKSKVVVFEDAP--AGIAAGKAAGCKIVGIATTFDLDF 228
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 216 LIGMERFEGL--DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR 273
L+ M + G+ D + D ++ KPDP Y+ A+ LG+ + ++ L+AA
Sbjct: 145 LLDMAKNAGIPWDVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHA 204
Query: 274 AGMACVI 280
G+A
Sbjct: 205 TGLATAF 211
>pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHI|B Chain B, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh
And 7-Oxo Glycochenodeoxycholic Acid
pdb|1AHH|A Chain A, 7 Alpha-hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1AHH|B Chain B, 7 Alpha-hydroxysteroid Dehydrogenase Complexed With Nad+
pdb|1FMC|A Chain A, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
pdb|1FMC|B Chain B, 7-Alpha-Hydroxysteroid Dehydrogenase Complex With Nadh And
7-Oxo Glycochenodeoxycholic Acid
Length = 255
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 14/59 (23%)
Query: 77 VIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEF-------YDVLQNQIGGGKPK 128
V+ E + L QA F RCD +S+Q L+ +F D+L N GGG PK
Sbjct: 51 VVDEIQQLGGQA-------FACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK 102
>pdb|3UM9|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
pdb|3UM9|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Bpro0530
Length = 230
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ 236
++ P V + + + +AAG K A+ S ++ S+ + N F D ++ D+V+
Sbjct: 94 SLTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTNSF---DHLISVDEVRL 150
Query: 237 KKPDPSIYVTAAKRLGISEKDCLVV 261
KP +Y A L + E + L V
Sbjct: 151 FKPHQKVYELAMDTLHLGESEILFV 175
>pdb|2PR7|A Chain A, Crystal Structure Of Uncharacterized Protein (Np_599989.1)
From Corynebacterium Glutamicum Atcc 13032 Kitasato At
1.44 A Resolution
pdb|2PR7|B Chain B, Crystal Structure Of Uncharacterized Protein (Np_599989.1)
From Corynebacterium Glutamicum Atcc 13032 Kitasato At
1.44 A Resolution
Length = 137
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279
+D L ++ +KP+ + + AA + + +DC++V+DS++ ++ A AG+ V
Sbjct: 61 VDKVLLSGELGVEKPEEAAFQAAADAIDLPXRDCVLVDDSILNVRGAVEAGLVGV 115
>pdb|3C2P|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C2P|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P1 Promoter
Complex
pdb|3C3L|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C3L|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2 Promoter
Complex
pdb|3C46|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3C46|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap P2_7a
Promoter Complex Soaked With Mgcl2
pdb|3Q24|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
pdb|3Q24|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Pppgpg
And Pyrophosphate: Product Complex
Length = 1117
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 247 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 297
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 143 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 193
>pdb|2PO4|A Chain A, X-Ray Crystal Structure Of Polymerase Domain Of The
Bacteriophage N4 Virion Rna Polymerase
Length = 1104
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 247 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 297
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 131 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 181
>pdb|3Q22|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q22|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gtp And
Magnesium: Substrate Complex I
pdb|3Q23|A Chain A, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q23|B Chain B, X-Ray Crystal Structure Of The N4 Mini-Vrnap And P2_7a
Promoter Transcription Initiation Complex With Gmpcpp
And Manganese: Sustrate Complex Ii
pdb|3Q0A|A Chain A, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|3Q0A|B Chain B, X-Ray Crystal Structure Of The Transcription Initiation
Complex Of The N4 Mini-Vrnap With P2 Promoter: Mismatch
Complex
pdb|4FF1|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF1|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 1 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF2|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 2 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF3|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 3 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|A Chain A, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
pdb|4FF4|B Chain B, N4 Mini-vrnap Transcription Initiation Complex, 4 Min
After Soaking Gtp, Atp And Mn
Length = 1118
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 247 AAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAI 297
K L I E+D + + LQ A AG+ +T TS+TA +D KD AI
Sbjct: 143 GGKLLNIVEQDGDTFKYNEQLLQTAVLAGLQWRLTATSNTAIKDAKDVAAI 193
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284
D + V KP+P IY L S + + ++D L+ A GM ++ +
Sbjct: 147 FDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT 206
Query: 285 STAEQDFKDAIAI 297
TA ++ + I
Sbjct: 207 DTALKELEKVTGI 219
>pdb|3L8H|A Chain A, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|B Chain B, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|C Chain C, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
pdb|3L8H|D Chain D, Crystal Structure Of D,D-Heptose 1.7-Bisphosphate
Phosphatase From B. Bronchiseptica Complexed With
Magnesium And Phosphate
Length = 179
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 232 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS----STA 287
D +KP P Y A+R + V DS+ LQAA +AG A + T + A
Sbjct: 95 DGCACRKPLPGXYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLA 154
Query: 288 EQDFKDAIAIYPDLSNVRLKDLELLLQ 314
+ + + DL+ V E LLQ
Sbjct: 155 QGGLPEGTRVCEDLAAV----AEQLLQ 177
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 219 MERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278
+ F+G+ + + VK+ KP P +Y +G K+ +V + + A AGM
Sbjct: 117 LRYFKGI---FSAESVKEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGMRS 171
Query: 279 VITYTSST 286
+ +T
Sbjct: 172 IFVNRKNT 179
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 219 MERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278
+ F+G+ + + VK+ KP P +Y +G K+ +V + + A AGM
Sbjct: 112 LRYFKGI---FSAESVKEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGMRS 166
Query: 279 VITYTSST 286
+ +T
Sbjct: 167 IFVNRKNT 174
>pdb|3HAH|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
pdb|3HAH|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (C2
Lattice)
Length = 325
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
>pdb|3HAI|A Chain A, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|B Chain B, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|C Chain C, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
pdb|3HAI|D Chain D, Crystal Structure Of Human Pacsin1 F-Bar Domain (P21
Lattice)
Length = 308
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
>pdb|3QGM|A Chain A, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|B Chain B, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|C Chain C, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
pdb|3QGM|D Chain D, P-Nitrophenyl Phosphatase From Archaeoglobus Fulgidus
Length = 268
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF 291
DV KP I A LG+ KD VV D + + + A G V+ T T ++
Sbjct: 182 DVVVGKPSEVIXREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENL 241
Query: 292 KDAI---AIYPDLSNVRLKD 308
I + PD LKD
Sbjct: 242 DQXIERHGLKPDYVFNSLKD 261
>pdb|2X3V|A Chain A, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|B Chain B, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3V|C Chain C, Structure Of The F-Bar Domain Of Mouse Syndapin I
pdb|2X3W|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3W|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|A Chain A, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|B Chain B, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|C Chain C, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 337
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 107 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166
Query: 218 GMER 221
M R
Sbjct: 167 AMTR 170
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIG-LQAATRAGMACVITYTS 284
KP P + +A + +G+ +++ D ++G + A R GM + T
Sbjct: 190 KPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTG 237
>pdb|3QNI|A Chain A, Crystal Structure Of Human Pacsin 1 F-Bar Domain
pdb|3QNI|B Chain B, Crystal Structure Of Human Pacsin 1 F-Bar Domain
Length = 307
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 158 IDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLI 217
++ +++W+ + Y + I G E + K KK+ AA K+ + C E +
Sbjct: 110 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKL 169
Query: 218 GMER 221
M R
Sbjct: 170 AMTR 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,351,782
Number of Sequences: 62578
Number of extensions: 326503
Number of successful extensions: 871
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 794
Number of HSP's gapped (non-prelim): 82
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)