Query 020871
Match_columns 320
No_of_seqs 219 out of 1499
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 100.0 8.1E-35 1.8E-39 250.9 26.1 243 64-316 37-280 (286)
2 PLN03243 haloacid dehalogenase 100.0 4.3E-32 9.3E-37 230.2 23.6 213 65-309 22-235 (260)
3 PLN02575 haloacid dehalogenase 100.0 5E-32 1.1E-36 237.3 24.5 219 64-314 128-347 (381)
4 PLN02770 haloacid dehalogenase 100.0 7.6E-32 1.6E-36 228.6 23.1 213 63-305 18-232 (248)
5 PRK13288 pyrophosphatase PpaX; 100.0 1.3E-31 2.8E-36 222.8 23.1 212 65-315 1-212 (214)
6 TIGR03351 PhnX-like phosphonat 100.0 2.3E-31 5.1E-36 222.3 23.3 211 67-313 1-219 (220)
7 COG0546 Gph Predicted phosphat 100.0 4.6E-31 1E-35 219.7 24.8 216 65-314 2-218 (220)
8 PRK13226 phosphoglycolate phos 100.0 3.2E-31 7E-36 222.3 23.0 214 65-313 10-224 (229)
9 PRK10826 2-deoxyglucose-6-phos 100.0 5.2E-31 1.1E-35 220.4 21.3 208 66-304 6-215 (222)
10 COG0637 Predicted phosphatase/ 100.0 6.8E-31 1.5E-35 218.2 19.9 217 66-315 1-218 (221)
11 TIGR01422 phosphonatase phosph 100.0 2.2E-30 4.8E-35 220.8 22.8 190 67-286 2-205 (253)
12 PRK13478 phosphonoacetaldehyde 100.0 1.5E-30 3.3E-35 223.4 20.7 193 65-286 2-207 (267)
13 PRK11587 putative phosphatase; 100.0 1.6E-30 3.4E-35 216.7 19.7 206 65-307 1-206 (218)
14 TIGR01449 PGP_bact 2-phosphogl 100.0 3.7E-30 8.1E-35 214.0 21.9 193 70-291 1-194 (213)
15 PLN02940 riboflavin kinase 100.0 4.7E-30 1E-34 229.3 21.6 210 66-308 10-220 (382)
16 PRK13225 phosphoglycolate phos 100.0 1E-29 2.3E-34 217.0 22.5 213 64-317 59-271 (273)
17 PRK13223 phosphoglycolate phos 100.0 1.6E-29 3.5E-34 216.7 23.3 218 65-314 11-230 (272)
18 TIGR01454 AHBA_synth_RP 3-amin 100.0 2.3E-29 5E-34 207.9 22.7 202 70-313 1-203 (205)
19 PRK13222 phosphoglycolate phos 100.0 1.7E-28 3.7E-33 206.0 25.1 219 65-315 4-223 (226)
20 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 9.7E-29 2.1E-33 201.0 20.2 184 67-281 1-185 (185)
21 PRK10725 fructose-1-P/6-phosph 100.0 1.2E-28 2.6E-33 200.9 20.6 184 64-282 2-186 (188)
22 PRK10563 6-phosphogluconate ph 100.0 9.6E-29 2.1E-33 206.6 20.3 185 66-285 3-189 (221)
23 TIGR02253 CTE7 HAD superfamily 100.0 8.1E-29 1.8E-33 207.2 19.7 107 178-287 93-200 (221)
24 TIGR01990 bPGM beta-phosphoglu 100.0 1.3E-28 2.9E-33 200.2 20.3 182 69-281 1-184 (185)
25 PRK09449 dUMP phosphatase; Pro 100.0 2.2E-28 4.7E-33 205.0 21.0 128 178-314 94-223 (224)
26 TIGR01428 HAD_type_II 2-haloal 100.0 8.8E-29 1.9E-33 203.3 16.7 106 178-286 91-196 (198)
27 PRK14988 GMP/IMP nucleotidase; 100.0 6.7E-28 1.5E-32 201.1 20.5 131 176-316 90-221 (224)
28 PRK10748 flavin mononucleotide 100.0 5.8E-28 1.3E-32 203.6 20.0 217 66-313 9-238 (238)
29 PLN02919 haloacid dehalogenase 100.0 2.3E-27 5.1E-32 235.1 26.8 220 62-312 70-293 (1057)
30 TIGR02252 DREG-2 REG-2-like, H 100.0 5.1E-28 1.1E-32 199.6 18.4 187 68-280 1-203 (203)
31 TIGR02254 YjjG/YfnB HAD superf 100.0 1.6E-27 3.6E-32 199.7 21.2 186 67-287 1-203 (224)
32 PRK06698 bifunctional 5'-methy 100.0 2.5E-27 5.4E-32 218.0 22.9 217 64-315 238-455 (459)
33 PLN02811 hydrolase 99.9 2.6E-26 5.6E-31 191.5 19.8 204 74-308 1-210 (220)
34 PF13419 HAD_2: Haloacid dehal 99.9 1.1E-26 2.3E-31 187.0 16.7 174 70-281 1-176 (176)
35 COG1011 Predicted hydrolase (H 99.9 8.8E-27 1.9E-31 195.9 16.6 131 177-315 97-228 (229)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 2.9E-26 6.2E-31 190.3 16.3 108 177-287 92-201 (211)
37 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.8E-25 3.8E-30 181.5 15.8 99 177-281 82-184 (184)
38 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 5.6E-25 1.2E-29 180.5 18.7 180 68-274 1-197 (197)
39 KOG2914 Predicted haloacid-hal 99.9 3.6E-24 7.8E-29 174.2 20.8 209 63-304 6-218 (222)
40 PRK09456 ?-D-glucose-1-phospha 99.9 1.6E-24 3.4E-29 178.0 17.9 110 179-290 84-193 (199)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 2.7E-24 5.9E-29 174.4 19.0 100 178-281 84-183 (183)
42 KOG3085 Predicted hydrolase (H 99.9 9.1E-26 2E-30 184.0 9.9 207 64-291 4-222 (237)
43 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 5.3E-24 1.1E-28 167.8 16.9 154 69-275 1-154 (154)
44 PHA02597 30.2 hypothetical pro 99.9 1.4E-23 3E-28 172.3 16.6 173 66-286 1-178 (197)
45 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 9.5E-24 2.1E-28 170.0 10.2 166 69-274 1-175 (175)
46 TIGR00338 serB phosphoserine p 99.9 3.4E-22 7.4E-27 166.8 17.0 100 178-280 84-193 (219)
47 PLN02954 phosphoserine phospha 99.9 6.2E-21 1.3E-25 159.8 20.0 175 64-284 9-198 (224)
48 PRK06769 hypothetical protein; 99.9 1.5E-21 3.2E-26 156.1 14.7 107 178-287 27-142 (173)
49 PRK08942 D,D-heptose 1,7-bisph 99.9 1.9E-21 4.1E-26 157.2 15.4 105 178-287 28-152 (181)
50 TIGR01656 Histidinol-ppas hist 99.9 4E-22 8.7E-27 155.4 10.9 106 178-284 26-147 (147)
51 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 2.3E-21 4.9E-26 159.7 15.9 104 178-284 79-192 (201)
52 TIGR00213 GmhB_yaeD D,D-heptos 99.9 2.2E-21 4.7E-26 156.0 13.3 119 178-301 25-171 (176)
53 TIGR01691 enolase-ppase 2,3-di 99.9 1.2E-20 2.7E-25 155.4 17.8 106 178-287 94-201 (220)
54 PRK11133 serB phosphoserine ph 99.8 9.2E-20 2E-24 158.6 18.7 129 178-314 180-316 (322)
55 TIGR01685 MDP-1 magnesium-depe 99.8 3.1E-21 6.6E-26 152.5 7.4 107 177-286 43-161 (174)
56 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 2E-20 4.3E-25 143.4 11.7 97 179-282 25-131 (132)
57 TIGR01261 hisB_Nterm histidino 99.8 3.8E-20 8.3E-25 145.4 11.7 104 178-286 28-151 (161)
58 TIGR01672 AphA HAD superfamily 99.8 2.3E-19 4.9E-24 148.9 16.8 100 178-287 113-216 (237)
59 PRK09552 mtnX 2-hydroxy-3-keto 99.8 3.1E-19 6.7E-24 148.7 15.7 135 178-318 73-217 (219)
60 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 4.7E-19 1E-23 140.2 11.2 96 180-280 43-160 (166)
61 PRK13582 thrH phosphoserine ph 99.8 2.8E-18 6.1E-23 141.7 15.8 129 178-318 67-200 (205)
62 TIGR01452 PGP_euk phosphoglyco 99.8 7.8E-19 1.7E-23 151.5 11.1 109 180-292 144-257 (279)
63 KOG3109 Haloacid dehalogenase- 99.8 1.1E-17 2.3E-22 131.9 15.0 103 178-285 99-208 (244)
64 TIGR01668 YqeG_hyp_ppase HAD s 99.8 8.1E-18 1.8E-22 134.1 13.3 101 179-291 43-145 (170)
65 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 6.7E-18 1.5E-22 143.6 11.4 130 180-313 121-254 (257)
66 TIGR02137 HSK-PSP phosphoserin 99.7 9E-17 1.9E-21 131.4 17.0 98 178-283 67-172 (203)
67 cd01427 HAD_like Haloacid deha 99.7 1.2E-17 2.5E-22 128.5 11.0 101 178-281 23-139 (139)
68 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 1.3E-16 2.7E-21 129.9 16.3 95 178-278 71-185 (188)
69 TIGR03333 salvage_mtnX 2-hydro 99.7 7.7E-17 1.7E-21 133.8 14.4 99 178-277 69-178 (214)
70 PRK05446 imidazole glycerol-ph 99.7 7.9E-17 1.7E-21 141.0 13.3 103 178-285 29-151 (354)
71 TIGR01670 YrbI-phosphatas 3-de 99.7 7.7E-17 1.7E-21 126.3 10.9 116 187-319 36-151 (154)
72 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 4.2E-17 9.1E-22 123.7 8.5 88 179-273 29-126 (128)
73 COG0560 SerB Phosphoserine pho 99.7 9E-16 2E-20 126.0 16.3 100 178-280 76-185 (212)
74 PRK11009 aphA acid phosphatase 99.7 3.4E-16 7.4E-21 129.9 13.6 98 178-287 113-216 (237)
75 PHA02530 pseT polynucleotide k 99.7 1E-16 2.2E-21 140.2 11.0 105 178-285 186-299 (300)
76 TIGR01488 HAD-SF-IB Haloacid D 99.7 1.2E-15 2.5E-20 123.0 14.4 94 178-274 72-177 (177)
77 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 1.8E-16 4E-21 134.3 10.0 109 179-291 121-232 (249)
78 COG2179 Predicted hydrolase of 99.7 4.3E-16 9.4E-21 118.0 10.3 94 179-284 46-140 (175)
79 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 2E-15 4.4E-20 124.3 15.2 100 179-281 87-197 (202)
80 PLN02645 phosphoglycolate phos 99.7 3.5E-16 7.5E-21 136.9 10.8 126 186-314 177-308 (311)
81 PF00702 Hydrolase: haloacid d 99.7 1.2E-15 2.6E-20 126.8 12.8 90 178-275 126-215 (215)
82 PRK10530 pyridoxal phosphate ( 99.7 1.8E-15 3.9E-20 130.5 13.5 235 65-316 1-270 (272)
83 COG0647 NagD Predicted sugar p 99.6 6E-15 1.3E-19 123.9 14.5 80 235-315 187-267 (269)
84 PRK09484 3-deoxy-D-manno-octul 99.6 1.8E-15 4E-20 122.1 10.8 112 187-313 56-168 (183)
85 PRK10444 UMP phosphatase; Prov 99.6 6.3E-16 1.4E-20 130.4 7.8 61 232-292 168-229 (248)
86 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 1.3E-15 2.7E-20 128.9 7.0 99 180-282 139-241 (242)
87 PRK11590 hypothetical protein; 99.6 1.8E-13 3.9E-18 113.3 17.7 187 66-283 5-203 (211)
88 KOG1615 Phosphoserine phosphat 99.6 4E-14 8.7E-19 109.6 11.9 195 64-302 13-219 (227)
89 TIGR01686 FkbH FkbH-like domai 99.5 3.2E-14 6.9E-19 125.1 10.5 91 179-277 31-125 (320)
90 smart00577 CPDc catalytic doma 99.5 1.1E-14 2.4E-19 113.4 6.7 95 178-279 44-139 (148)
91 PRK01158 phosphoglycolate phos 99.5 1.5E-14 3.2E-19 121.7 6.8 77 234-316 152-228 (230)
92 COG0241 HisB Histidinol phosph 99.5 3.1E-13 6.7E-18 106.3 13.4 105 178-287 30-154 (181)
93 TIGR02726 phenyl_P_delta pheny 99.5 1.1E-13 2.4E-18 109.3 10.6 112 187-313 42-154 (169)
94 TIGR01482 SPP-subfamily Sucros 99.5 2.2E-14 4.8E-19 120.1 6.6 113 198-315 110-223 (225)
95 PRK08238 hypothetical protein; 99.5 2E-12 4.3E-17 118.5 17.5 100 177-286 70-169 (479)
96 TIGR01663 PNK-3'Pase polynucle 99.5 1.8E-13 4E-18 125.7 10.7 92 180-276 198-305 (526)
97 PF13242 Hydrolase_like: HAD-h 99.5 1.6E-13 3.4E-18 93.8 6.6 68 236-303 2-74 (75)
98 TIGR01544 HAD-SF-IE haloacid d 99.5 3.2E-12 7E-17 107.9 15.9 101 171-274 113-230 (277)
99 PRK00192 mannosyl-3-phosphogly 99.5 6.8E-13 1.5E-17 114.3 11.8 49 239-287 190-239 (273)
100 PRK10513 sugar phosphate phosp 99.4 3.7E-12 7.9E-17 109.8 15.4 78 234-317 191-268 (270)
101 PTZ00445 p36-lilke protein; Pr 99.4 1.2E-12 2.6E-17 104.2 11.2 103 179-284 75-207 (219)
102 PLN02887 hydrolase family prot 99.4 1.4E-11 3.1E-16 114.9 17.4 77 234-316 502-578 (580)
103 COG4229 Predicted enolase-phos 99.4 3.3E-11 7.1E-16 92.5 15.8 106 178-287 102-209 (229)
104 PF06888 Put_Phosphatase: Puta 99.4 1.6E-11 3.6E-16 101.4 15.4 137 177-316 69-233 (234)
105 KOG2882 p-Nitrophenyl phosphat 99.4 2E-12 4.3E-17 107.7 9.3 81 234-314 220-304 (306)
106 TIGR01487 SPP-like sucrose-pho 99.4 2.7E-12 5.9E-17 106.7 9.7 98 198-302 110-207 (215)
107 PF12689 Acid_PPase: Acid Phos 99.4 1.3E-12 2.7E-17 102.5 7.1 102 177-286 43-155 (169)
108 PRK15126 thiamin pyrimidine py 99.4 6.4E-12 1.4E-16 108.3 12.2 78 234-317 183-262 (272)
109 PRK10976 putative hydrolase; P 99.4 2.4E-11 5.2E-16 104.4 14.7 78 234-317 185-264 (266)
110 COG0561 Cof Predicted hydrolas 99.3 2.9E-11 6.2E-16 103.8 13.4 78 234-317 184-261 (264)
111 TIGR01460 HAD-SF-IIA Haloacid 99.3 3.2E-12 7E-17 107.5 7.2 50 235-284 185-236 (236)
112 PF09419 PGP_phosphatase: Mito 99.3 3.1E-11 6.8E-16 94.2 10.4 94 179-285 59-167 (168)
113 TIGR01456 CECR5 HAD-superfamil 99.3 1.7E-10 3.6E-15 101.6 15.7 54 235-288 230-297 (321)
114 PRK03669 mannosyl-3-phosphogly 99.2 3.5E-10 7.7E-15 97.3 15.1 82 234-319 182-270 (271)
115 TIGR01533 lipo_e_P4 5'-nucleot 99.2 4.4E-10 9.6E-15 95.0 13.9 87 176-271 115-204 (266)
116 TIGR01485 SPP_plant-cyano sucr 99.2 3.2E-10 6.9E-15 96.4 13.2 52 233-284 161-212 (249)
117 TIGR02463 MPGP_rel mannosyl-3- 99.2 3.9E-10 8.4E-15 94.2 13.4 41 239-279 179-219 (221)
118 TIGR01684 viral_ppase viral ph 99.2 7.3E-11 1.6E-15 99.3 8.6 62 179-243 145-207 (301)
119 TIGR01545 YfhB_g-proteo haloac 99.2 1.2E-09 2.6E-14 90.0 15.0 101 178-283 93-202 (210)
120 PF08645 PNK3P: Polynucleotide 99.2 1.1E-10 2.4E-15 91.6 8.4 94 180-278 30-152 (159)
121 TIGR00099 Cof-subfamily Cof su 99.2 1.3E-09 2.8E-14 93.1 14.8 67 234-303 183-249 (256)
122 TIGR02244 HAD-IG-Ncltidse HAD 99.1 4.8E-10 1E-14 97.8 11.7 104 178-283 183-324 (343)
123 TIGR02471 sucr_syn_bact_C sucr 99.1 4E-10 8.8E-15 95.0 10.9 48 233-280 153-200 (236)
124 PF12710 HAD: haloacid dehalog 99.1 5.8E-10 1.2E-14 90.9 11.5 85 182-272 92-192 (192)
125 KOG3040 Predicted sugar phosph 99.1 2E-10 4.2E-15 90.3 7.9 54 235-288 178-232 (262)
126 KOG3120 Predicted haloacid deh 99.1 3.2E-09 6.9E-14 84.4 13.2 139 177-318 82-248 (256)
127 PF08282 Hydrolase_3: haloacid 99.0 4.2E-10 9.2E-15 95.6 6.1 66 235-303 182-247 (254)
128 TIGR01525 ATPase-IB_hvy heavy 99.0 2.3E-09 4.9E-14 101.5 11.4 116 178-313 383-499 (556)
129 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 2.6E-08 5.6E-13 85.1 16.3 78 235-316 172-255 (256)
130 COG4359 Uncharacterized conser 99.0 1.5E-08 3.3E-13 78.3 12.7 95 178-278 72-182 (220)
131 TIGR02251 HIF-SF_euk Dullard-l 99.0 5.2E-10 1.1E-14 88.3 4.7 98 178-282 41-139 (162)
132 PHA03398 viral phosphatase sup 98.9 6.4E-09 1.4E-13 87.8 9.6 51 181-234 150-200 (303)
133 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 7.9E-09 1.7E-13 87.4 9.8 91 178-276 23-116 (242)
134 PRK14502 bifunctional mannosyl 98.9 1.7E-07 3.6E-12 88.1 18.8 44 237-280 611-656 (694)
135 TIGR01512 ATPase-IB2_Cd heavy 98.9 1E-08 2.2E-13 96.6 10.8 104 178-298 361-466 (536)
136 TIGR02461 osmo_MPG_phos mannos 98.9 3E-08 6.5E-13 82.7 12.0 43 237-279 179-223 (225)
137 COG4087 Soluble P-type ATPase 98.8 4.9E-08 1.1E-12 71.1 10.3 110 178-300 29-138 (152)
138 TIGR01511 ATPase-IB1_Cu copper 98.8 3E-08 6.6E-13 93.8 10.8 116 178-314 404-519 (562)
139 PRK10671 copA copper exporting 98.8 4.1E-08 8.9E-13 97.3 11.1 116 179-314 650-765 (834)
140 PLN02382 probable sucrose-phos 98.7 2.7E-07 5.8E-12 83.8 14.3 46 235-280 171-220 (413)
141 TIGR01484 HAD-SF-IIB HAD-super 98.7 9.2E-09 2E-13 84.7 3.9 47 234-280 158-204 (204)
142 PRK12702 mannosyl-3-phosphogly 98.7 1.4E-06 3E-11 74.0 16.2 50 237-287 206-257 (302)
143 PF06941 NT5C: 5' nucleotidase 98.7 4.7E-08 1E-12 79.6 7.3 109 177-314 71-186 (191)
144 TIGR01675 plant-AP plant acid 98.7 5.2E-07 1.1E-11 74.3 13.3 103 176-283 117-223 (229)
145 TIGR00685 T6PP trehalose-phosp 98.7 2.4E-07 5.3E-12 78.4 11.7 67 241-316 169-242 (244)
146 COG4996 Predicted phosphatase 98.7 8.2E-08 1.8E-12 69.9 6.7 82 177-268 39-129 (164)
147 PF13344 Hydrolase_6: Haloacid 98.6 4.8E-07 1E-11 65.3 9.4 84 179-276 14-100 (101)
148 COG1778 Low specificity phosph 98.6 7.2E-08 1.6E-12 72.8 5.2 80 188-279 44-123 (170)
149 PRK10187 trehalose-6-phosphate 98.5 1.9E-06 4.1E-11 73.8 12.9 70 236-317 171-244 (266)
150 PF03767 Acid_phosphat_B: HAD 98.5 1.8E-07 4E-12 77.9 6.2 91 176-273 112-210 (229)
151 TIGR01522 ATPase-IIA2_Ca golgi 98.5 2.6E-07 5.7E-12 92.0 8.4 99 179-280 528-642 (884)
152 PLN02423 phosphomannomutase 98.5 4.6E-08 9.9E-13 82.7 2.1 48 234-286 184-235 (245)
153 PF05116 S6PP: Sucrose-6F-phos 98.5 7.8E-07 1.7E-11 75.3 8.9 49 235-284 161-209 (247)
154 PTZ00174 phosphomannomutase; P 98.5 2.1E-07 4.5E-12 79.0 5.0 46 234-283 183-232 (247)
155 TIGR01680 Veg_Stor_Prot vegeta 98.4 5.4E-06 1.2E-10 69.6 12.6 104 176-284 142-251 (275)
156 smart00775 LNS2 LNS2 domain. T 98.4 3.9E-06 8.4E-11 65.8 11.2 97 179-277 27-141 (157)
157 PRK11033 zntA zinc/cadmium/mer 98.4 2.9E-06 6.2E-11 82.9 12.4 114 179-314 568-681 (741)
158 COG3700 AphA Acid phosphatase 98.4 7E-06 1.5E-10 63.4 11.3 105 181-294 116-224 (237)
159 KOG2630 Enolase-phosphatase E- 98.3 2.5E-05 5.5E-10 63.0 13.4 101 179-287 123-229 (254)
160 TIGR01116 ATPase-IIA1_Ca sarco 98.2 9E-06 1.9E-10 81.5 9.7 118 179-300 537-672 (917)
161 COG2217 ZntA Cation transport 98.2 1.5E-05 3.4E-10 76.4 10.7 116 179-314 537-652 (713)
162 TIGR01497 kdpB K+-transporting 98.2 1.4E-05 3.1E-10 76.4 10.4 89 179-281 446-534 (675)
163 PF05761 5_nucleotid: 5' nucle 98.1 1.3E-05 2.9E-10 72.9 9.0 105 178-284 182-326 (448)
164 PRK14010 potassium-transportin 98.1 3.4E-05 7.5E-10 73.9 11.2 103 179-298 441-543 (673)
165 PRK01122 potassium-transportin 98.1 2.9E-05 6.2E-10 74.5 10.6 116 179-314 445-560 (679)
166 PF11019 DUF2608: Protein of u 98.0 8.1E-05 1.8E-09 63.0 11.3 103 179-285 81-212 (252)
167 PLN02645 phosphoglycolate phos 97.9 7.6E-05 1.7E-09 65.5 10.1 90 179-280 44-136 (311)
168 PRK14501 putative bifunctional 97.9 0.00015 3.2E-09 71.2 12.3 71 236-317 654-724 (726)
169 TIGR02250 FCP1_euk FCP1-like p 97.9 6.4E-05 1.4E-09 58.8 7.8 82 178-268 57-140 (156)
170 PLN02177 glycerol-3-phosphate 97.8 0.0015 3.3E-08 60.7 17.1 94 180-279 111-212 (497)
171 PRK10517 magnesium-transportin 97.8 8.1E-05 1.8E-09 74.3 9.2 114 179-300 550-679 (902)
172 TIGR01517 ATPase-IIB_Ca plasma 97.8 9.8E-05 2.1E-09 74.4 9.8 117 179-300 579-711 (941)
173 TIGR01524 ATPase-IIIB_Mg magne 97.8 0.00014 3.1E-09 72.5 10.1 113 179-299 515-643 (867)
174 COG3882 FkbH Predicted enzyme 97.8 0.00036 7.9E-09 62.5 11.1 90 179-276 255-348 (574)
175 COG5663 Uncharacterized conser 97.8 0.00062 1.4E-08 52.3 10.8 95 179-288 72-167 (194)
176 PRK15122 magnesium-transportin 97.7 0.00016 3.5E-09 72.3 9.9 112 179-298 550-677 (903)
177 TIGR01647 ATPase-IIIA_H plasma 97.7 0.00015 3.2E-09 71.3 9.3 111 179-298 442-574 (755)
178 COG2503 Predicted secreted aci 97.7 0.00047 1E-08 56.3 10.3 86 177-271 120-209 (274)
179 TIGR01689 EcbF-BcbF capsule bi 97.7 0.0005 1.1E-08 51.4 9.5 30 179-208 24-53 (126)
180 PLN02580 trehalose-phosphatase 97.7 0.00097 2.1E-08 59.5 12.8 71 237-317 299-377 (384)
181 PF08235 LNS2: LNS2 (Lipin/Ned 97.7 0.00043 9.3E-09 53.5 9.2 95 179-277 27-141 (157)
182 TIGR01523 ATPase-IID_K-Na pota 97.6 0.00032 6.9E-09 71.2 9.6 119 179-300 646-788 (1053)
183 PLN02205 alpha,alpha-trehalose 97.5 0.0038 8.3E-08 61.9 16.0 39 237-275 760-801 (854)
184 PF05152 DUF705: Protein of un 97.4 0.00072 1.6E-08 56.8 7.9 50 180-232 143-192 (297)
185 KOG0207 Cation transport ATPas 97.4 0.001 2.2E-08 64.2 9.2 88 179-280 723-810 (951)
186 COG0474 MgtA Cation transport 97.4 0.00071 1.5E-08 67.9 8.5 101 179-282 547-665 (917)
187 KOG0202 Ca2+ transporting ATPa 97.3 0.0011 2.5E-08 63.3 8.8 117 179-300 584-720 (972)
188 COG5610 Predicted hydrolase (H 97.3 0.0013 2.9E-08 58.5 8.7 98 181-281 101-201 (635)
189 TIGR01494 ATPase_P-type ATPase 97.3 0.0026 5.6E-08 59.9 10.8 85 179-280 347-431 (499)
190 KOG2961 Predicted hydrolase (H 97.2 0.004 8.7E-08 47.1 9.0 99 179-287 61-172 (190)
191 KOG3107 Predicted haloacid deh 97.2 0.027 5.9E-07 49.2 14.8 63 217-284 391-453 (468)
192 TIGR01106 ATPase-IIC_X-K sodiu 97.2 0.0017 3.7E-08 65.9 8.9 119 179-300 568-726 (997)
193 KOG2470 Similar to IMP-GMP spe 97.1 0.0016 3.6E-08 56.0 6.8 101 179-281 240-374 (510)
194 PLN03017 trehalose-phosphatase 97.0 0.014 3E-07 51.8 12.0 70 239-317 283-359 (366)
195 PLN02151 trehalose-phosphatase 96.9 0.019 4.1E-07 50.8 12.0 70 239-318 269-346 (354)
196 TIGR02245 HAD_IIID1 HAD-superf 96.9 0.02 4.4E-07 46.3 11.1 93 179-277 45-151 (195)
197 TIGR01452 PGP_euk phosphoglyco 96.9 0.027 5.9E-07 48.7 12.5 88 179-279 18-108 (279)
198 COG3769 Predicted hydrolase (H 96.8 0.0054 1.2E-07 49.6 6.8 38 65-102 5-44 (274)
199 TIGR01652 ATPase-Plipid phosph 96.7 0.005 1.1E-07 63.1 8.2 40 179-219 631-670 (1057)
200 COG2216 KdpB High-affinity K+ 96.7 0.0031 6.7E-08 57.3 5.8 90 180-283 448-537 (681)
201 PLN03190 aminophospholipid tra 96.7 0.0044 9.4E-08 63.7 7.4 37 179-215 726-762 (1178)
202 TIGR01657 P-ATPase-V P-type AT 96.7 0.016 3.5E-07 59.4 11.4 41 179-220 656-696 (1054)
203 COG4030 Uncharacterized protei 96.7 0.12 2.7E-06 42.1 13.7 40 178-219 82-121 (315)
204 KOG2134 Polynucleotide kinase 96.4 0.011 2.4E-07 51.9 6.8 96 179-279 104-230 (422)
205 KOG0210 P-type ATPase [Inorgan 96.0 0.1 2.2E-06 49.5 11.3 27 179-205 658-684 (1051)
206 PF03031 NIF: NLI interacting 95.9 0.0069 1.5E-07 47.6 3.1 84 178-268 35-119 (159)
207 KOG0206 P-type ATPase [General 95.9 0.032 6.9E-07 56.5 8.2 38 179-216 651-688 (1151)
208 PF05822 UMPH-1: Pyrimidine 5' 95.9 0.036 7.7E-07 46.3 7.1 102 169-274 80-198 (246)
209 COG4502 5'(3')-deoxyribonucleo 95.8 0.023 5E-07 42.5 5.2 85 178-285 67-154 (180)
210 TIGR01658 EYA-cons_domain eyes 95.8 0.06 1.3E-06 44.5 7.8 66 217-286 196-261 (274)
211 KOG1618 Predicted phosphatase 95.6 0.054 1.2E-06 46.4 7.2 90 179-280 51-144 (389)
212 PRK10444 UMP phosphatase; Prov 95.6 0.11 2.3E-06 44.1 9.2 103 179-283 17-143 (248)
213 KOG3128 Uncharacterized conser 95.2 0.058 1.2E-06 44.7 6.0 96 176-274 135-247 (298)
214 COG1877 OtsB Trehalose-6-phosp 94.9 0.2 4.4E-06 42.6 8.6 45 240-284 183-230 (266)
215 PLN02499 glycerol-3-phosphate 94.5 0.22 4.7E-06 46.0 8.4 91 187-283 101-198 (498)
216 PF06189 5-nucleotidase: 5'-nu 94.3 0.68 1.5E-05 38.9 10.1 75 195-286 186-262 (264)
217 PF06437 ISN1: IMP-specific 5' 94.2 0.42 9.2E-06 42.3 9.0 55 66-121 146-206 (408)
218 CHL00162 thiG thiamin biosynth 94.1 0.81 1.7E-05 38.3 10.0 101 178-287 117-223 (267)
219 KOG2116 Protein involved in pl 93.9 0.73 1.6E-05 43.6 10.4 92 181-277 560-672 (738)
220 PF05690 ThiG: Thiazole biosyn 93.8 0.59 1.3E-05 38.6 8.7 100 178-286 103-208 (247)
221 TIGR02468 sucrsPsyn_pln sucros 93.8 1.3 2.7E-05 45.2 12.7 50 234-283 951-1002(1050)
222 KOG2882 p-Nitrophenyl phosphat 93.5 1.1 2.5E-05 38.4 10.2 96 179-285 38-135 (306)
223 KOG2469 IMP-GMP specific 5'-nu 93.4 0.17 3.7E-06 44.9 5.4 101 181-283 200-334 (424)
224 TIGR01460 HAD-SF-IIA Haloacid 93.2 0.81 1.8E-05 38.4 9.2 86 179-277 14-102 (236)
225 TIGR01457 HAD-SF-IIA-hyp2 HAD- 93.2 0.18 4E-06 42.7 5.3 102 179-283 17-144 (249)
226 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.1 0.14 3.1E-06 43.6 4.5 50 179-231 21-73 (257)
227 TIGR02726 phenyl_P_delta pheny 92.6 0.064 1.4E-06 42.5 1.5 17 65-81 5-21 (169)
228 COG1778 Low specificity phosph 92.0 0.083 1.8E-06 40.5 1.4 18 65-82 6-23 (170)
229 COG2022 ThiG Uncharacterized e 91.6 2.2 4.7E-05 35.2 9.1 100 179-287 111-216 (262)
230 PRK13762 tRNA-modifying enzyme 91.0 3 6.5E-05 36.8 10.3 32 176-207 139-170 (322)
231 KOG0204 Calcium transporting A 90.9 1 2.2E-05 44.1 7.6 105 179-284 647-767 (1034)
232 PRK11840 bifunctional sulfur c 90.8 4.1 8.9E-05 35.6 10.6 101 178-287 177-283 (326)
233 KOG3040 Predicted sugar phosph 90.0 1.3 2.9E-05 35.8 6.5 38 179-216 23-60 (262)
234 PRK00192 mannosyl-3-phosphogly 89.8 0.78 1.7E-05 39.4 5.6 43 179-222 21-63 (273)
235 PRK00208 thiG thiazole synthas 89.0 7.5 0.00016 32.6 10.4 101 178-287 103-209 (250)
236 cd04728 ThiG Thiazole synthase 88.9 9.2 0.0002 32.1 10.8 101 178-287 103-209 (248)
237 TIGR01456 CECR5 HAD-superfamil 88.3 2.2 4.9E-05 37.6 7.6 85 179-279 16-108 (321)
238 COG5083 SMP2 Uncharacterized p 88.1 2 4.4E-05 38.8 6.9 28 250-277 488-516 (580)
239 KOG1618 Predicted phosphatase 87.8 0.55 1.2E-05 40.5 3.2 53 235-287 268-345 (389)
240 PF03031 NIF: NLI interacting 87.5 0.28 6.1E-06 38.3 1.3 15 68-82 1-15 (159)
241 PRK10513 sugar phosphate phosp 86.7 2.2 4.8E-05 36.5 6.5 41 179-220 20-60 (270)
242 KOG0209 P-type ATPase [Inorgan 86.4 2.6 5.6E-05 41.4 7.0 39 178-216 674-712 (1160)
243 TIGR01487 SPP-like sucrose-pho 86.0 1.9 4.1E-05 35.5 5.5 41 179-220 18-58 (215)
244 PLN03064 alpha,alpha-trehalose 85.6 1.5 3.2E-05 44.3 5.3 39 178-216 621-660 (934)
245 TIGR02461 osmo_MPG_phos mannos 85.5 2.1 4.4E-05 35.7 5.5 41 180-221 16-56 (225)
246 KOG0323 TFIIF-interacting CTD 85.2 3.3 7.2E-05 39.7 7.1 79 178-266 200-281 (635)
247 PRK01158 phosphoglycolate phos 84.2 2.8 6.1E-05 34.8 5.8 42 179-221 20-61 (230)
248 TIGR02463 MPGP_rel mannosyl-3- 84.2 2.4 5.2E-05 35.0 5.3 40 180-220 17-56 (221)
249 PRK00994 F420-dependent methyl 84.1 23 0.00051 29.4 10.6 81 195-283 31-117 (277)
250 TIGR00099 Cof-subfamily Cof su 83.6 2.7 5.8E-05 35.6 5.5 41 179-220 16-56 (256)
251 PRK12702 mannosyl-3-phosphogly 83.1 3.4 7.3E-05 35.8 5.7 42 179-221 18-59 (302)
252 PRK15126 thiamin pyrimidine py 82.4 3 6.4E-05 35.8 5.4 42 179-221 19-60 (272)
253 KOG3189 Phosphomannomutase [Li 82.3 4.8 0.0001 32.5 5.8 28 68-95 12-39 (252)
254 TIGR01482 SPP-subfamily Sucros 82.2 3.3 7.1E-05 34.2 5.4 41 179-220 15-55 (225)
255 KOG4549 Magnesium-dependent ph 82.0 13 0.00028 27.7 7.5 84 178-267 43-134 (144)
256 PRK10976 putative hydrolase; P 81.4 3.3 7.2E-05 35.3 5.3 42 179-221 19-60 (266)
257 PLN03063 alpha,alpha-trehalose 81.2 2.8 6.1E-05 42.0 5.3 37 179-215 532-569 (797)
258 PRK10530 pyridoxal phosphate ( 80.7 3.7 8.1E-05 35.0 5.4 42 179-221 20-61 (272)
259 KOG0203 Na+/K+ ATPase, alpha s 80.6 1.7 3.6E-05 42.7 3.3 103 179-284 590-734 (1019)
260 TIGR03470 HpnH hopanoid biosyn 80.3 39 0.00085 29.8 11.7 32 175-206 80-111 (318)
261 cd00733 GlyRS_alpha_core Class 79.9 2.2 4.7E-05 35.5 3.3 45 238-283 81-132 (279)
262 COG0561 Cof Predicted hydrolas 79.5 4.9 0.00011 34.2 5.7 42 179-221 20-61 (264)
263 TIGR01486 HAD-SF-IIB-MPGP mann 79.5 4.6 9.9E-05 34.3 5.5 40 180-220 17-56 (256)
264 COG4850 Uncharacterized conser 79.3 14 0.0003 32.3 8.0 88 178-272 195-295 (373)
265 PRK03669 mannosyl-3-phosphogly 78.9 4.7 0.0001 34.5 5.4 41 179-220 24-64 (271)
266 TIGR02329 propionate_PrpR prop 78.8 7 0.00015 37.1 6.8 90 183-286 85-174 (526)
267 COG0731 Fe-S oxidoreductases [ 78.7 3.8 8.2E-05 35.5 4.6 103 175-286 88-214 (296)
268 PF08282 Hydrolase_3: haloacid 78.7 4.9 0.00011 33.4 5.4 41 179-220 15-55 (254)
269 PRK09348 glyQ glycyl-tRNA synt 78.6 2.4 5.3E-05 35.3 3.3 45 238-283 85-136 (283)
270 TIGR00388 glyQ glycyl-tRNA syn 77.9 2.7 5.9E-05 35.2 3.4 45 238-283 82-133 (293)
271 PF06506 PrpR_N: Propionate ca 77.3 5.6 0.00012 31.6 5.0 85 183-284 65-152 (176)
272 PF06014 DUF910: Bacterial pro 75.2 1.8 3.9E-05 27.7 1.3 25 244-272 7-31 (62)
273 PRK15424 propionate catabolism 75.0 9.6 0.00021 36.3 6.6 88 183-284 95-182 (538)
274 TIGR01484 HAD-SF-IIB HAD-super 74.0 7.1 0.00015 31.7 5.0 38 179-216 17-54 (204)
275 PF13580 SIS_2: SIS domain; PD 72.3 40 0.00086 25.5 9.6 104 179-282 19-137 (138)
276 PRK15317 alkyl hydroperoxide r 70.9 66 0.0014 30.5 11.3 29 255-283 211-242 (517)
277 PTZ00174 phosphomannomutase; P 68.1 19 0.00042 30.3 6.5 36 179-214 22-57 (247)
278 smart00577 CPDc catalytic doma 67.9 3.3 7.2E-05 31.9 1.6 15 68-82 3-17 (148)
279 PLN02887 hydrolase family prot 67.1 15 0.00032 35.4 6.0 41 179-220 325-365 (580)
280 COG0752 GlyQ Glycyl-tRNA synth 67.0 6.2 0.00013 32.8 3.0 45 238-283 86-137 (298)
281 TIGR01485 SPP_plant-cyano sucr 62.3 17 0.00036 30.7 5.0 40 180-220 22-61 (249)
282 TIGR01361 DAHP_synth_Bsub phos 61.7 1E+02 0.0022 26.3 12.3 119 185-317 122-258 (260)
283 TIGR03278 methan_mark_10 putat 61.7 1.3E+02 0.0027 27.7 10.7 29 177-205 84-113 (404)
284 TIGR02251 HIF-SF_euk Dullard-l 60.4 5.3 0.00011 31.3 1.5 14 68-81 2-15 (162)
285 PF02350 Epimerase_2: UDP-N-ac 60.1 1.3E+02 0.0028 26.9 10.6 114 182-318 200-317 (346)
286 smart00540 LEM in nuclear memb 59.6 11 0.00025 22.3 2.4 32 185-216 9-40 (44)
287 PF03808 Glyco_tran_WecB: Glyc 59.1 65 0.0014 25.4 7.6 74 185-265 38-111 (172)
288 PF03102 NeuB: NeuB family; I 58.7 51 0.0011 27.8 7.2 125 183-318 101-231 (241)
289 PLN02591 tryptophan synthase 58.6 1.1E+02 0.0025 25.9 9.9 99 180-284 116-220 (250)
290 PF02358 Trehalose_PPase: Treh 58.5 6.8 0.00015 32.8 1.9 38 239-276 165-205 (235)
291 PF02593 dTMP_synthase: Thymid 58.5 14 0.00031 30.5 3.7 94 178-279 58-158 (217)
292 PLN02951 Molybderin biosynthes 58.3 52 0.0011 29.8 7.7 31 176-206 115-147 (373)
293 TIGR03140 AhpF alkyl hydropero 57.3 1.8E+02 0.0038 27.7 11.5 30 253-282 210-242 (515)
294 TIGR00262 trpA tryptophan synt 57.2 1.2E+02 0.0026 25.8 10.1 95 180-284 125-229 (256)
295 PRK10187 trehalose-6-phosphate 57.0 17 0.00037 31.1 4.2 38 179-216 36-74 (266)
296 PF02091 tRNA-synt_2e: Glycyl- 56.3 3.2 6.8E-05 34.9 -0.4 45 238-283 80-131 (284)
297 PRK08649 inosine 5-monophospha 55.0 1.6E+02 0.0036 26.6 10.7 92 183-285 119-218 (368)
298 TIGR02668 moaA_archaeal probab 54.8 50 0.0011 28.7 6.9 31 176-206 65-96 (302)
299 PF01993 MTD: methylene-5,6,7, 54.5 80 0.0017 26.5 7.3 44 237-283 71-116 (276)
300 TIGR03365 Bsubt_queE 7-cyano-7 54.0 14 0.00031 31.0 3.2 32 176-207 81-112 (238)
301 PF14336 DUF4392: Domain of un 53.3 79 0.0017 27.5 7.7 26 181-206 62-87 (291)
302 KOG0207 Cation transport ATPas 52.7 2.2E+02 0.0048 29.0 11.1 27 176-202 683-709 (951)
303 TIGR02250 FCP1_euk FCP1-like p 52.6 9.6 0.00021 29.7 1.8 17 66-82 5-21 (156)
304 TIGR02495 NrdG2 anaerobic ribo 51.6 39 0.00085 27.0 5.4 32 176-207 71-102 (191)
305 PRK14021 bifunctional shikimat 51.4 1.5E+02 0.0034 28.3 10.0 96 182-283 195-303 (542)
306 PRK14502 bifunctional mannosyl 51.4 32 0.00069 33.7 5.3 40 180-220 434-473 (694)
307 TIGR02826 RNR_activ_nrdG3 anae 51.3 56 0.0012 25.1 5.8 28 180-207 73-100 (147)
308 COG2896 MoaA Molybdenum cofact 51.2 50 0.0011 29.1 6.1 84 175-277 67-152 (322)
309 TIGR01304 IMP_DH_rel_2 IMP deh 51.0 1.9E+02 0.0041 26.2 9.9 96 184-285 121-219 (369)
310 COG3769 Predicted hydrolase (H 50.1 28 0.0006 28.8 4.0 37 183-220 27-63 (274)
311 cd06533 Glyco_transf_WecG_TagA 49.5 97 0.0021 24.4 7.1 74 185-265 36-109 (171)
312 PRK13125 trpA tryptophan synth 48.7 1.6E+02 0.0035 24.7 11.0 95 182-284 116-216 (244)
313 cd01766 Ufm1 Urm1-like ubiquit 48.6 50 0.0011 21.9 4.2 43 235-277 23-65 (82)
314 PF06189 5-nucleotidase: 5'-nu 48.5 1.7E+02 0.0037 24.9 9.2 76 194-285 35-112 (264)
315 COG0656 ARA1 Aldo/keto reducta 48.3 1.8E+02 0.004 25.1 9.6 63 183-253 121-184 (280)
316 PRK10964 ADP-heptose:LPS hepto 48.3 1.9E+02 0.0041 25.3 10.7 117 183-317 198-320 (322)
317 PRK14908 glycyl-tRNA synthetas 48.2 19 0.0004 36.8 3.4 45 238-283 86-137 (1000)
318 PRK13361 molybdenum cofactor b 48.2 85 0.0018 27.8 7.3 31 176-206 70-102 (329)
319 cd01445 TST_Repeats Thiosulfat 47.4 71 0.0015 24.1 5.9 50 236-285 75-132 (138)
320 KOG0780 Signal recognition par 47.2 1.6E+02 0.0034 26.9 8.4 89 179-272 139-231 (483)
321 COG4483 Uncharacterized protei 47.1 22 0.00048 22.9 2.4 25 245-273 8-32 (68)
322 cd06539 CIDE_N_A CIDE_N domain 45.8 18 0.0004 24.4 2.0 18 67-84 40-57 (78)
323 cd02071 MM_CoA_mut_B12_BD meth 45.6 1.2E+02 0.0026 22.3 9.5 89 185-280 17-107 (122)
324 cd06537 CIDE_N_B CIDE_N domain 45.6 18 0.0004 24.5 2.0 18 67-84 39-56 (81)
325 PRK10076 pyruvate formate lyas 45.6 40 0.00086 27.8 4.5 32 176-207 47-79 (213)
326 KOG0208 Cation transport ATPas 45.4 50 0.0011 33.7 5.6 40 179-219 705-744 (1140)
327 PRK05301 pyrroloquinoline quin 45.0 48 0.001 29.9 5.4 31 176-206 71-101 (378)
328 TIGR02244 HAD-IG-Ncltidse HAD 45.0 24 0.00052 31.4 3.3 19 64-82 9-27 (343)
329 COG2241 CobL Precorrin-6B meth 44.9 78 0.0017 26.0 6.0 77 195-284 68-149 (210)
330 TIGR02471 sucr_syn_bact_C sucr 44.5 52 0.0011 27.3 5.2 40 186-230 22-61 (236)
331 cd05008 SIS_GlmS_GlmD_1 SIS (S 44.3 40 0.00087 24.7 4.0 31 179-209 57-87 (126)
332 smart00266 CAD Domains present 43.6 21 0.00045 23.9 2.0 18 67-84 38-55 (74)
333 TIGR02193 heptsyl_trn_I lipopo 43.0 2.3E+02 0.0049 24.7 12.1 114 183-317 199-319 (319)
334 cd05014 SIS_Kpsf KpsF-like pro 42.6 36 0.00079 25.0 3.6 31 179-209 58-88 (128)
335 COG5426 Uncharacterized membra 42.1 73 0.0016 25.7 5.1 83 177-265 27-120 (254)
336 PRK03692 putative UDP-N-acetyl 41.1 1.7E+02 0.0036 24.8 7.6 80 185-272 95-176 (243)
337 TIGR02109 PQQ_syn_pqqE coenzym 40.9 58 0.0013 29.1 5.2 31 176-206 62-92 (358)
338 PRK13397 3-deoxy-7-phosphohept 40.9 2.3E+02 0.0049 24.1 11.4 121 185-318 112-249 (250)
339 COG0541 Ffh Signal recognition 40.7 1.5E+02 0.0032 27.4 7.5 98 179-281 138-246 (451)
340 PF12522 UL73_N: Cytomegalovir 40.3 32 0.0007 17.6 1.9 19 6-24 5-23 (27)
341 TIGR03586 PseI pseudaminic aci 40.0 2.3E+02 0.0049 25.2 8.5 118 185-317 124-251 (327)
342 TIGR00236 wecB UDP-N-acetylglu 39.7 2E+02 0.0043 25.6 8.5 99 184-285 16-120 (365)
343 TIGR03151 enACPred_II putative 39.6 2.6E+02 0.0057 24.5 9.3 88 185-284 99-192 (307)
344 PRK13789 phosphoribosylamine-- 39.4 1.5E+02 0.0034 27.3 7.8 55 74-140 69-123 (426)
345 COG0761 lytB 4-Hydroxy-3-methy 39.2 1.4E+02 0.003 25.9 6.7 45 241-289 227-271 (294)
346 TIGR01290 nifB nitrogenase cof 39.2 1.2E+02 0.0027 28.1 7.1 30 177-206 89-121 (442)
347 cd05710 SIS_1 A subgroup of th 39.0 53 0.0011 24.1 3.9 31 179-209 58-88 (120)
348 PF03332 PMM: Eukaryotic phosp 39.0 36 0.00078 28.1 3.1 29 184-213 1-29 (220)
349 TIGR00696 wecB_tagA_cpsF bacte 38.2 2.1E+02 0.0045 22.8 7.5 73 185-265 38-110 (177)
350 PRK09140 2-dehydro-3-deoxy-6-p 38.0 2.2E+02 0.0047 23.3 7.7 80 187-281 3-89 (206)
351 PRK11145 pflA pyruvate formate 37.7 51 0.0011 27.6 4.1 31 176-206 79-110 (246)
352 PF04413 Glycos_transf_N: 3-De 37.7 22 0.00047 28.6 1.7 73 179-268 105-184 (186)
353 cd01615 CIDE_N CIDE_N domain, 37.7 29 0.00062 23.5 2.0 19 66-84 39-57 (78)
354 PF02358 Trehalose_PPase: Treh 37.5 32 0.0007 28.7 2.8 12 71-82 1-12 (235)
355 PRK07114 keto-hydroxyglutarate 37.4 2.4E+02 0.0052 23.4 8.3 115 186-314 7-130 (222)
356 cd06536 CIDE_N_ICAD CIDE_N dom 37.0 30 0.00064 23.5 2.0 18 67-84 42-59 (80)
357 PF05761 5_nucleotid: 5' nucle 36.1 39 0.00085 31.4 3.3 19 64-82 9-27 (448)
358 PRK13111 trpA tryptophan synth 36.1 2.7E+02 0.006 23.7 9.4 118 180-318 127-254 (258)
359 PF03020 LEM: LEM domain; Int 35.8 5.2 0.00011 23.6 -1.5 31 186-216 10-40 (43)
360 COG1922 WecG Teichoic acid bio 35.1 1.6E+02 0.0034 25.1 6.4 74 185-265 98-171 (253)
361 cd06538 CIDE_N_FSP27 CIDE_N do 34.9 34 0.00073 23.2 2.0 18 67-84 39-56 (79)
362 PRK10017 colanic acid biosynth 34.7 3.8E+02 0.0082 24.9 11.9 121 182-318 260-391 (426)
363 cd05015 SIS_PGI_1 Phosphogluco 34.7 1.8E+02 0.0039 22.5 6.5 82 194-280 48-135 (158)
364 KOG1359 Glycine C-acetyltransf 34.4 1.1E+02 0.0024 26.7 5.4 100 179-287 271-380 (417)
365 COG0378 HypB Ni2+-binding GTPa 34.3 2.6E+02 0.0056 22.8 7.7 73 185-265 31-106 (202)
366 PF01380 SIS: SIS domain SIS d 34.2 78 0.0017 23.1 4.3 31 179-209 64-94 (131)
367 TIGR00288 conserved hypothetic 33.9 34 0.00074 26.8 2.2 30 68-97 25-54 (160)
368 PF04413 Glycos_transf_N: 3-De 33.7 2.5E+02 0.0054 22.5 8.5 91 183-287 36-130 (186)
369 PRK04940 hypothetical protein; 33.6 89 0.0019 25.0 4.5 57 256-312 60-119 (180)
370 COG2897 SseA Rhodanese-related 33.6 95 0.0021 26.9 5.0 53 235-287 69-127 (285)
371 TIGR03127 RuMP_HxlB 6-phospho 33.4 67 0.0014 25.4 3.9 32 179-210 83-114 (179)
372 TIGR03572 WbuZ glycosyl amidat 33.1 2.8E+02 0.0061 22.9 8.0 45 237-284 182-229 (232)
373 KOG0024 Sorbitol dehydrogenase 32.5 1.5E+02 0.0034 26.2 6.1 75 243-317 157-238 (354)
374 PF12641 Flavodoxin_3: Flavodo 32.0 1.9E+02 0.0041 22.6 6.1 38 225-265 40-77 (160)
375 PRK12595 bifunctional 3-deoxy- 31.7 3.9E+02 0.0084 24.1 12.4 118 185-317 215-351 (360)
376 cd05013 SIS_RpiR RpiR-like pro 31.4 76 0.0017 23.3 3.8 27 181-207 73-99 (139)
377 COG2099 CobK Precorrin-6x redu 31.3 3E+02 0.0064 23.5 7.3 99 178-284 111-231 (257)
378 COG0505 CarA Carbamoylphosphat 31.2 3.2E+02 0.0069 24.6 7.8 137 89-255 97-252 (368)
379 TIGR02493 PFLA pyruvate format 31.0 1.1E+02 0.0024 25.3 5.1 30 176-205 74-104 (235)
380 cd06831 PLPDE_III_ODC_like_AZI 30.9 3.3E+02 0.0072 24.8 8.4 30 250-279 75-106 (394)
381 PF13382 Adenine_deam_C: Adeni 30.9 1.7E+02 0.0036 23.2 5.7 64 251-317 61-128 (171)
382 TIGR02370 pyl_corrinoid methyl 30.9 2.9E+02 0.0062 22.3 9.4 90 183-278 100-189 (197)
383 COG4087 Soluble P-type ATPase 30.7 2.4E+02 0.0052 21.4 7.0 89 196-295 21-113 (152)
384 PRK13790 phosphoribosylamine-- 30.5 1.8E+02 0.0039 26.4 6.6 56 73-140 27-82 (379)
385 KOG4584 Uncharacterized conser 30.5 1.7E+02 0.0037 25.5 5.9 19 178-196 118-136 (348)
386 PF04007 DUF354: Protein of un 30.3 2.7E+02 0.0059 24.8 7.5 91 185-286 17-114 (335)
387 PF10113 Fibrillarin_2: Fibril 30.3 1.3E+02 0.0027 27.6 5.2 46 239-284 206-255 (505)
388 PHA02575 1 deoxynucleoside mon 30.1 3.3E+02 0.0071 22.8 7.7 102 200-318 111-226 (227)
389 PRK13717 conjugal transfer pro 29.7 24 0.00053 26.2 0.7 16 64-79 42-57 (128)
390 KOG1605 TFIIF-interacting CTD 29.6 30 0.00066 29.5 1.4 12 68-79 90-101 (262)
391 PRK11303 DNA-binding transcrip 29.5 3.7E+02 0.0081 23.2 9.3 20 183-202 166-186 (328)
392 COG1834 N-Dimethylarginine dim 29.5 3.7E+02 0.008 23.1 8.1 86 185-273 41-146 (267)
393 PF02350 Epimerase_2: UDP-N-ac 29.1 1.2E+02 0.0026 27.1 5.2 91 190-284 2-100 (346)
394 PF13911 AhpC-TSA_2: AhpC/TSA 29.0 2.2E+02 0.0047 20.4 6.2 30 186-215 4-33 (115)
395 cd05006 SIS_GmhA Phosphoheptos 28.9 78 0.0017 25.0 3.6 29 179-207 112-140 (177)
396 cd04729 NanE N-acetylmannosami 28.9 3.2E+02 0.007 22.3 10.3 90 183-284 110-208 (219)
397 KOG0205 Plasma membrane H+-tra 28.6 1.8E+02 0.0039 28.6 6.2 99 180-279 493-608 (942)
398 PF04358 DsrC: DsrC like prote 28.4 2.3E+02 0.0051 20.5 7.6 33 68-100 7-39 (109)
399 PRK13398 3-deoxy-7-phosphohept 28.4 3.8E+02 0.0083 23.0 12.9 119 185-318 124-261 (266)
400 PRK05752 uroporphyrinogen-III 28.3 3.6E+02 0.0078 22.7 7.8 21 180-200 11-31 (255)
401 PF00578 AhpC-TSA: AhpC/TSA fa 28.2 1.4E+02 0.003 21.4 4.7 37 182-219 46-82 (124)
402 KOG2832 TFIIF-interacting CTD 28.1 2.4E+02 0.0052 25.4 6.5 80 179-266 214-294 (393)
403 PRK02261 methylaspartate mutas 27.9 2.7E+02 0.0058 21.0 10.0 87 187-280 23-117 (137)
404 cd04795 SIS SIS domain. SIS (S 27.8 81 0.0017 21.0 3.1 23 180-202 59-81 (87)
405 PLN03017 trehalose-phosphatase 27.8 1E+02 0.0022 27.8 4.4 33 179-212 133-165 (366)
406 COG0019 LysA Diaminopimelate d 27.7 3.3E+02 0.0071 25.0 7.7 35 250-284 91-127 (394)
407 PF00389 2-Hacid_dh: D-isomer 27.6 2.5E+02 0.0055 20.7 7.5 82 181-283 8-91 (133)
408 PF03671 Ufm1: Ubiquitin fold 27.3 25 0.00055 23.2 0.4 38 236-273 24-61 (76)
409 cd05017 SIS_PGI_PMI_1 The memb 27.1 92 0.002 22.7 3.5 27 179-205 54-80 (119)
410 COG2910 Putative NADH-flavin r 27.1 2.2E+02 0.0047 23.2 5.6 22 186-207 15-36 (211)
411 PRK13937 phosphoheptose isomer 27.0 99 0.0021 24.8 3.9 31 179-209 117-147 (188)
412 cd05005 SIS_PHI Hexulose-6-pho 27.0 97 0.0021 24.5 3.9 31 179-209 86-116 (179)
413 KOG2961 Predicted hydrolase (H 26.9 85 0.0018 24.4 3.2 34 64-97 40-78 (190)
414 KOG0391 SNF2 family DNA-depend 26.9 1.2E+02 0.0026 32.0 5.0 90 185-284 1266-1355(1958)
415 PF05240 APOBEC_C: APOBEC-like 26.9 89 0.0019 19.6 2.7 21 182-202 2-22 (55)
416 cd01948 EAL EAL domain. This d 26.9 2.1E+02 0.0046 23.3 6.1 92 183-279 133-227 (240)
417 TIGR00441 gmhA phosphoheptose 26.7 92 0.002 24.0 3.6 31 179-209 90-120 (154)
418 KOG2469 IMP-GMP specific 5'-nu 26.6 49 0.0011 30.0 2.2 19 64-82 24-42 (424)
419 COG4821 Uncharacterized protei 26.6 3.6E+02 0.0079 22.1 8.1 98 183-283 26-139 (243)
420 TIGR01615 A_thal_3542 uncharac 26.5 1.7E+02 0.0036 22.1 4.6 68 186-265 3-86 (131)
421 cd00381 IMPDH IMPDH: The catal 26.5 4.5E+02 0.0098 23.2 9.3 94 182-285 120-229 (325)
422 PF02017 CIDE-N: CIDE-N domain 26.1 49 0.0011 22.4 1.6 19 66-84 39-57 (78)
423 COG0602 NrdG Organic radical a 25.9 86 0.0019 25.8 3.4 34 176-209 80-113 (212)
424 COG2089 SpsE Sialic acid synth 25.7 3.6E+02 0.0078 23.9 7.1 121 185-318 137-265 (347)
425 PF03332 PMM: Eukaryotic phosp 25.7 40 0.00087 27.9 1.4 31 255-285 175-209 (220)
426 TIGR03569 NeuB_NnaB N-acetylne 25.7 4.8E+02 0.01 23.2 10.9 121 185-318 123-253 (329)
427 PLN02580 trehalose-phosphatase 25.6 1.2E+02 0.0027 27.5 4.6 36 178-214 140-175 (384)
428 PRK00748 1-(5-phosphoribosyl)- 25.4 3.8E+02 0.0083 22.0 8.6 44 238-284 176-222 (233)
429 PRK06552 keto-hydroxyglutarate 25.4 3.9E+02 0.0084 22.0 9.1 81 187-280 6-93 (213)
430 cd04732 HisA HisA. Phosphorib 25.0 3.9E+02 0.0084 22.0 8.6 43 239-284 177-221 (234)
431 COG3453 Uncharacterized protei 25.0 1.6E+02 0.0035 21.9 4.2 49 225-273 29-81 (130)
432 COG1911 RPL30 Ribosomal protei 25.0 2.6E+02 0.0056 19.8 5.4 43 179-221 19-61 (100)
433 CHL00200 trpA tryptophan synth 24.9 4.4E+02 0.0096 22.5 10.0 99 180-284 129-233 (263)
434 PLN02151 trehalose-phosphatase 24.9 1.3E+02 0.0028 27.1 4.5 35 178-213 119-153 (354)
435 PRK11070 ssDNA exonuclease Rec 24.7 6.5E+02 0.014 24.4 12.0 109 179-295 50-170 (575)
436 TIGR01369 CPSaseII_lrg carbamo 24.5 1.6E+02 0.0034 31.0 5.7 96 185-285 481-598 (1050)
437 PRK12738 kbaY tagatose-bisphos 24.3 4.8E+02 0.01 22.7 8.0 99 183-287 5-109 (286)
438 TIGR01858 tag_bisphos_ald clas 24.3 4.7E+02 0.01 22.7 9.6 98 184-287 4-107 (282)
439 COG2044 Predicted peroxiredoxi 24.2 1.1E+02 0.0024 22.6 3.3 27 179-205 59-85 (120)
440 TIGR01285 nifN nitrogenase mol 23.9 5.9E+02 0.013 23.6 12.2 81 195-285 311-401 (432)
441 COG5190 FCP1 TFIIF-interacting 23.7 3.5E+02 0.0076 24.7 7.0 82 179-267 252-333 (390)
442 PRK08005 epimerase; Validated 23.6 4.2E+02 0.0091 21.8 10.5 94 182-282 93-191 (210)
443 PLN02334 ribulose-phosphate 3- 23.6 4.2E+02 0.0092 21.9 10.4 99 182-284 102-204 (229)
444 PF02571 CbiJ: Precorrin-6x re 23.6 4.6E+02 0.0099 22.2 10.3 103 178-287 112-231 (249)
445 PRK06856 DNA polymerase III su 23.4 1.7E+02 0.0037 22.0 4.2 65 190-262 7-71 (128)
446 PF00532 Peripla_BP_1: Peripla 23.4 4.4E+02 0.0095 22.5 7.5 39 189-231 25-63 (279)
447 TIGR00221 nagA N-acetylglucosa 23.1 5.7E+02 0.012 23.2 8.8 35 180-214 175-210 (380)
448 TIGR01282 nifD nitrogenase mol 23.0 6.3E+02 0.014 23.7 12.4 9 195-203 335-343 (466)
449 PRK10422 lipopolysaccharide co 23.0 5.3E+02 0.012 22.8 10.3 87 183-286 203-292 (352)
450 PRK00414 gmhA phosphoheptose i 22.9 1.3E+02 0.0029 24.2 4.0 30 180-209 123-152 (192)
451 TIGR00715 precor6x_red precorr 22.9 1.6E+02 0.0034 25.2 4.5 42 266-317 214-255 (256)
452 PLN02257 phosphoribosylamine-- 22.8 3.3E+02 0.0072 25.3 7.0 57 73-141 62-118 (434)
453 cd08197 DOIS 2-deoxy-scyllo-in 22.6 5.7E+02 0.012 23.0 10.5 46 238-283 64-118 (355)
454 PRK10727 DNA-binding transcrip 22.5 4.9E+02 0.011 22.7 7.9 22 182-203 162-184 (343)
455 PF03603 DNA_III_psi: DNA poly 22.4 1.8E+02 0.0039 21.8 4.2 68 190-265 8-75 (128)
456 COG1058 CinA Predicted nucleot 22.3 1.6E+02 0.0034 25.1 4.3 60 227-286 6-71 (255)
457 PF08444 Gly_acyl_tr_C: Aralky 22.2 1.7E+02 0.0037 20.4 3.7 32 185-216 42-73 (89)
458 PRK08304 stage V sporulation p 22.2 3E+02 0.0066 24.5 6.1 65 217-283 32-109 (337)
459 COG2920 DsrC Dissimilatory sul 22.0 45 0.00097 23.8 0.9 36 67-102 8-43 (111)
460 PRK11449 putative deoxyribonuc 22.0 4.9E+02 0.011 22.1 9.1 33 183-215 20-52 (258)
461 PF00875 DNA_photolyase: DNA p 21.9 1.2E+02 0.0027 23.4 3.5 49 180-235 51-99 (165)
462 PRK13938 phosphoheptose isomer 21.8 1.4E+02 0.003 24.2 3.9 31 179-209 124-154 (196)
463 KOG0622 Ornithine decarboxylas 21.8 4.4E+02 0.0095 24.3 7.1 65 199-281 85-151 (448)
464 PF04055 Radical_SAM: Radical 21.8 2.6E+02 0.0056 20.8 5.4 32 176-207 54-88 (166)
465 PLN02423 phosphomannomutase 21.7 1.7E+02 0.0037 24.6 4.5 34 179-213 24-57 (245)
466 TIGR01303 IMP_DH_rel_1 IMP deh 21.7 6.9E+02 0.015 23.6 9.2 98 182-286 251-361 (475)
467 KOG3483 Uncharacterized conser 21.6 1.3E+02 0.0027 20.1 2.8 44 234-277 33-76 (94)
468 PF09269 DUF1967: Domain of un 21.4 67 0.0014 21.1 1.6 21 244-264 45-65 (69)
469 PHA00657 crystallin beta/gamma 21.4 4.4E+02 0.0095 28.3 7.6 48 144-192 873-920 (2052)
470 PRK00286 xseA exodeoxyribonucl 21.4 6.6E+02 0.014 23.2 10.1 67 196-265 136-202 (438)
471 PF06901 FrpC: RTX iron-regula 21.3 53 0.0011 26.4 1.2 16 67-82 58-73 (271)
472 PRK07807 inosine 5-monophospha 21.3 6.2E+02 0.013 23.9 8.4 46 234-284 309-361 (479)
473 PF14213 DUF4325: Domain of un 21.3 1.8E+02 0.0039 19.1 3.7 30 68-97 18-47 (74)
474 TIGR02494 PFLE_PFLC glycyl-rad 21.2 1.1E+02 0.0024 26.5 3.4 32 175-206 133-165 (295)
475 cd06589 GH31 The enzymes of gl 21.2 1.1E+02 0.0023 26.2 3.2 28 179-206 63-90 (265)
476 PRK08673 3-deoxy-7-phosphohept 21.2 6E+02 0.013 22.7 11.8 121 185-317 190-326 (335)
477 PRK01185 ppnK inorganic polyph 20.8 5.5E+02 0.012 22.1 7.8 53 254-318 52-104 (271)
478 PRK10916 ADP-heptose:LPS hepto 20.7 5.9E+02 0.013 22.5 13.0 90 183-286 201-291 (348)
479 TIGR03595 Obg_CgtA_exten Obg f 20.6 1.1E+02 0.0024 20.0 2.5 21 243-263 44-64 (69)
480 PRK12815 carB carbamoyl phosph 20.5 2.5E+02 0.0054 29.6 6.2 96 185-285 482-599 (1068)
481 PF09949 DUF2183: Uncharacteri 20.4 3.3E+02 0.0071 19.4 6.8 30 242-273 53-83 (100)
482 PRK03670 competence damage-ind 20.4 4.8E+02 0.01 22.2 6.9 57 228-284 6-69 (252)
483 COG3655 Predicted transcriptio 20.4 1.2E+02 0.0027 20.2 2.6 24 242-265 46-69 (73)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=8.1e-35 Score=250.88 Aligned_cols=243 Identities=53% Similarity=0.917 Sum_probs=185.9
Q ss_pred CCCccEEEEecCCccccch-HHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcc
Q 020871 64 SQSLQALIFDCDGVIIESE-HLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSST 142 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (320)
...+++||||+||||+|+. ..+..+|.++++++|++.. .+..+.+..+.. +|.+...+...+...+++...
T Consensus 37 ~~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~-------~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 108 (286)
T PLN02779 37 SALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPV-------EWDVELYDELLN-IGGGKERMTWYFNENGWPTST 108 (286)
T ss_pred ccCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCC-------CCCHHHHHHHHc-cCCChHHHHHHHHHcCCCccc
Confidence 3468999999999999999 9999999999999988321 122333333333 677766666666666665332
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
+ ...+...+..++..+.+.+.+.+.|...+....+.++||+.++|+.|++.|++++|+||+....+...++...+...+
T Consensus 109 ~-~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~ 187 (286)
T PLN02779 109 I-EKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERA 187 (286)
T ss_pred c-ccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcccccc
Confidence 2 111222333344555566666667776654444689999999999999999999999999999888888775222222
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccc
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 302 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~ 302 (320)
..|+.+ ++++++..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|++.++....+.+..++.++.++.
T Consensus 188 ~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~ 266 (286)
T PLN02779 188 QGLDVF-AGDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLG 266 (286)
T ss_pred CceEEE-eccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChh
Confidence 224544 7888889999999999999999999999999999999999999999999999888776667778899999999
Q ss_pred ccChhHHHHHHHHh
Q 020871 303 NVRLKDLELLLQNV 316 (320)
Q Consensus 303 ~~~~~~l~~~l~~~ 316 (320)
++.+.++..++-..
T Consensus 267 ~l~~~~~~~~~~~~ 280 (286)
T PLN02779 267 DVPLEDFDLLFCES 280 (286)
T ss_pred hcchhhhHHHHHHH
Confidence 99999998776543
No 2
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=4.3e-32 Score=230.21 Aligned_cols=213 Identities=24% Similarity=0.373 Sum_probs=161.3
Q ss_pred CCccEEEEecCCccccch-HHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccc
Q 020871 65 QSLQALIFDCDGVIIESE-HLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTI 143 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 143 (320)
..+|+||||+||||+|+. ..+..+|..+++++|+..+. .+.++...|.+.......+- ++.
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~------------~e~~~~~~G~~~~~~~~~l~--~~~---- 83 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPP------------AFLLKRAEGMKNEQAISEVL--CWS---- 83 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCH------------HHHHHHhcCCCHHHHHHHHh--ccC----
Confidence 479999999999999996 56778999999999986543 12334456666544333221 111
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcccc
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~ 223 (320)
.+.. ..+.+...+...+... ......++||+.++|+.|+++|++++|+||+....+...++++ |+..+
T Consensus 84 -----~~~~----~~~~l~~~~~~~~~~~-~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl~~~- 151 (260)
T PLN03243 84 -----RDFL----QMKRLAIRKEDLYEYM-QGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV-GMEGF- 151 (260)
T ss_pred -----CCHH----HHHHHHHHHHHHHHHH-HccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc-CCHhh-
Confidence 0011 1223333344444322 2345689999999999999999999999999999899999997 99999
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
|+.+++++++..+||+|++|..+++++|++|++|+||||+..|+++|+++|+.+|++. +......+..+++++.++.+
T Consensus 152 -Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~e 229 (260)
T PLN03243 152 -FSVVLAAEDVYRGKPDPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDD 229 (260)
T ss_pred -CcEEEecccCCCCCCCHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 44444455556666666655
Q ss_pred cChhHH
Q 020871 304 VRLKDL 309 (320)
Q Consensus 304 ~~~~~l 309 (320)
+....+
T Consensus 230 l~~~~~ 235 (260)
T PLN03243 230 LSVVDL 235 (260)
T ss_pred HHHHHH
Confidence 544333
No 3
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=100.00 E-value=5e-32 Score=237.28 Aligned_cols=219 Identities=22% Similarity=0.291 Sum_probs=171.7
Q ss_pred CCCccEEEEecCCccccchH-HHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcc
Q 020871 64 SQSLQALIFDCDGVIIESEH-LHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSST 142 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (320)
...+++||||+||||+|+.. .+..+|.++++++|.+... .+.++..+|.+.......+.....
T Consensus 128 ~~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~------------~e~~~~~~G~~~~~~l~~ll~~~~---- 191 (381)
T PLN02575 128 GCGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPP------------AFILRRVEGMKNEQAISEVLCWSR---- 191 (381)
T ss_pred cCCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCH------------HHHHHHhcCCCHHHHHHHHhhccC----
Confidence 35899999999999999986 6668999999999986543 123455667665544332211111
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
+.. ..+.+.+.+.+.|.+... ....++||+.++|+.|++.|++++|+||+....+...++.+ |+..|
T Consensus 192 -------~~~----~~e~l~~~~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l-gL~~y 258 (381)
T PLN02575 192 -------DPA----ELRRMATRKEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI-GIRGF 258 (381)
T ss_pred -------CHH----HHHHHHHHHHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCHHH
Confidence 111 123344445555655432 34579999999999999999999999999999999999997 99999
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccc
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 302 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~ 302 (320)
|+.+++++++..+||+|++|..+++++|+.|++|+||||+..|+++|+++|+.+|++.++. ....+..++.++.++.
T Consensus 259 --Fd~Iv~sddv~~~KP~Peifl~A~~~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~-~~~~l~~Ad~iI~s~~ 335 (381)
T PLN02575 259 --FSVIVAAEDVYRGKPDPEMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKH-PIYELGAADLVVRRLD 335 (381)
T ss_pred --ceEEEecCcCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCC-ChhHhcCCCEEECCHH
Confidence 9999999999999999999999999999999999999999999999999999999998754 3344556778888888
Q ss_pred ccChhHHHHHHH
Q 020871 303 NVRLKDLELLLQ 314 (320)
Q Consensus 303 ~~~~~~l~~~l~ 314 (320)
++.+..|..+..
T Consensus 336 EL~~~~l~~l~~ 347 (381)
T PLN02575 336 ELSIVDLKNLAD 347 (381)
T ss_pred HHHHHHHhhhhh
Confidence 887777766554
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=7.6e-32 Score=228.56 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=158.9
Q ss_pred CCCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcc
Q 020871 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSST 142 (320)
Q Consensus 63 ~~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 142 (320)
...++++|+||+||||+|+...+..+|+++++++|..... ....+. ..+...|.+.......+- ..
T Consensus 18 ~~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~------~~~~~~--~~~~~~G~~~~~~~~~~~--~~---- 83 (248)
T PLN02770 18 GLAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGV------PITEEF--FVENIAGKHNEDIALGLF--PD---- 83 (248)
T ss_pred ccCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCC------CCCHHH--HHHHcCCCCHHHHHHHHc--Cc----
Confidence 3457899999999999999999999999999998753110 001111 122334544433222110 00
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
..... ..+...+...|..... ....++||+.++|+.|+++|++++|+||+....+...++++ |+..+
T Consensus 84 -------~~~~~----~~~~~~~~~~y~~~~~-~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~-gl~~~ 150 (248)
T PLN02770 84 -------DLERG----LKFTDDKEALFRKLAS-EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL-GLSDF 150 (248)
T ss_pred -------chhhH----HHHHHHHHHHHHHHHH-hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CChhh
Confidence 00111 1122233444444332 34689999999999999999999999999999999999997 99999
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhc--cccceeccc
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF--KDAIAIYPD 300 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l--~~~~~~~~~ 300 (320)
|+.+++++++..+||+|++|..+++++|++|++|+||||+..|+++|+++|+.+|++.++... +.+ ..+++++.+
T Consensus 151 --Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~-~~l~~~~a~~vi~~ 227 (248)
T PLN02770 151 --FQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPE-SLLMEAKPTFLIKD 227 (248)
T ss_pred --CcEEEecCcCCCCCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCH-HHHhhcCCCEEecc
Confidence 999999999999999999999999999999999999999999999999999999999887533 333 257778888
Q ss_pred ccccC
Q 020871 301 LSNVR 305 (320)
Q Consensus 301 ~~~~~ 305 (320)
+.+++
T Consensus 228 ~~e~~ 232 (248)
T PLN02770 228 YEDPK 232 (248)
T ss_pred chhhH
Confidence 77744
No 5
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=1.3e-31 Score=222.79 Aligned_cols=212 Identities=19% Similarity=0.281 Sum_probs=159.6
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (320)
|++++|+||+||||+|+...+..+|..++++++..... .+.+...+|.+... .+...+
T Consensus 1 m~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~G~~~~~---~~~~~~------- 58 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYK------------REDVLPFIGPSLHD---TFSKID------- 58 (214)
T ss_pred CCccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCC------------HHHHHHHhCcCHHH---HHHhcC-------
Confidence 46899999999999999999999999999998764221 13344555554332 222211
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
.... +.+...+.+.+.... .....++||+.++|+.|+++|++++|+||+....+...++.+ |+..+
T Consensus 59 ------~~~~----~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~-gl~~~-- 124 (214)
T PRK13288 59 ------ESKV----EEMITTYREFNHEHH-DELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT-GLDEF-- 124 (214)
T ss_pred ------HHHH----HHHHHHHHHHHHHhh-hhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhc--
Confidence 1111 222223333333221 133579999999999999999999999999999999999987 99999
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 304 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 304 (320)
|+.+++++++...||+|++|..++++++++|++|+||||+.+|+++|+++|+.++++.++......+... .+++..-
T Consensus 125 f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~---~~~~~i~ 201 (214)
T PRK13288 125 FDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQY---KPDFMLD 201 (214)
T ss_pred eeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhc---CcCEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998886554444221 1333333
Q ss_pred ChhHHHHHHHH
Q 020871 305 RLKDLELLLQN 315 (320)
Q Consensus 305 ~~~~l~~~l~~ 315 (320)
++.++.+++.+
T Consensus 202 ~~~~l~~~i~~ 212 (214)
T PRK13288 202 KMSDLLAIVGD 212 (214)
T ss_pred CHHHHHHHHhh
Confidence 56677776654
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=2.3e-31 Score=222.32 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=159.8
Q ss_pred ccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHH-HhcCChhhHH-HHHHhcCCCCcccc
Q 020871 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQN-QIGGGKPKMR-WYFKEHGWPSSTIF 144 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~ 144 (320)
+|+|+||+||||+|+.+.+..+|+++++++|.+.+. +.+.. ..|.+...+. ..+...|.+
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~~g~~~~~~~~~~~~~~~~~----- 62 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTP-------------EEVQSAWMGQSKIEAIRALLALDGAD----- 62 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCH-------------HHHHHhhcCCCHHHHHHHHHhccCCC-----
Confidence 589999999999999999999999999999886533 12222 4455544433 333333321
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc--cc
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME--RF 222 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~--~~ 222 (320)
.. ..+.+...+.+.+...+......++||+.++|+.|++.|++++++||+....+...++.+ |+. .+
T Consensus 63 ------~~----~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~l~~~~~ 131 (220)
T TIGR03351 63 ------EA----EAQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-GWTVGDD 131 (220)
T ss_pred ------HH----HHHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-hhhhhcc
Confidence 11 123333334444444433344689999999999999999999999999999999999987 888 88
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCCEEEEecCHhhHHHHHHcCCeE-EEEeCCCCchhhcc--ccceec
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMAC-VITYTSSTAEQDFK--DAIAIY 298 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~-~~~~v~VGD~~~Dv~~a~~aG~~~-v~v~~~~~~~~~l~--~~~~~~ 298 (320)
|+.++++++....||+|++|..+++++|+. |++|+||||+.+|+++|+++|+.+ +++.++....+.+. .+++++
T Consensus 132 --f~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i 209 (220)
T TIGR03351 132 --VDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVL 209 (220)
T ss_pred --CCEEEcCCcCCCCCCCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceee
Confidence 899999999999999999999999999997 799999999999999999999999 89988766555443 233343
Q ss_pred ccccccChhHHHHHH
Q 020871 299 PDLSNVRLKDLELLL 313 (320)
Q Consensus 299 ~~~~~~~~~~l~~~l 313 (320)
. ++.+|..++
T Consensus 210 ~-----~~~~l~~~~ 219 (220)
T TIGR03351 210 D-----SVADLPALL 219 (220)
T ss_pred c-----CHHHHHHhh
Confidence 3 345555443
No 7
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=4.6e-31 Score=219.74 Aligned_cols=216 Identities=24% Similarity=0.386 Sum_probs=167.0
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHH-HhcCCCCccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYF-KEHGWPSSTI 143 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~ 143 (320)
+++++|+||+||||+|+...+..+++.+++++|.+... .+.++..+|.+.......+ .....
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ig~~~~~~~~~~~~~~~~----- 64 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLD------------EEEIRQLIGLGLDELIERLLGEADE----- 64 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCC------------HHHHHHHhcCCHHHHHHHHhccccc-----
Confidence 57999999999999999999999999999999987433 3566667777665544322 11111
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcccc
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~ 223 (320)
.......+.+.+.+.+.+.+.. ...++||+.++|..|++.|++++|+||.....++..++++ |+..+
T Consensus 65 --------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~-gl~~~- 131 (220)
T COG0546 65 --------EAAAELVERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKAL-GLADY- 131 (220)
T ss_pred --------hhHHHHHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHh-CCccc-
Confidence 1111334444444444444432 2479999999999999999999999999999999999997 99999
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
|+.++++++....||+|..+..+++++|++|++++||||+.+|+++|++||+.+|+|.+|+...+.+.. ..+++..
T Consensus 132 -F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~---~~~d~vi 207 (220)
T COG0546 132 -FDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQ---AGADVVI 207 (220)
T ss_pred -cceEEcCCCCCCCCcCHHHHHHHHHHhCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhh---cCCCEEE
Confidence 999999888999999999999999999999889999999999999999999999999998753333321 2244444
Q ss_pred cChhHHHHHHH
Q 020871 304 VRLKDLELLLQ 314 (320)
Q Consensus 304 ~~~~~l~~~l~ 314 (320)
.++.+|..+++
T Consensus 208 ~~~~el~~~l~ 218 (220)
T COG0546 208 DSLAELLALLA 218 (220)
T ss_pred CCHHHHHHHHh
Confidence 45666666654
No 8
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=3.2e-31 Score=222.27 Aligned_cols=214 Identities=21% Similarity=0.228 Sum_probs=157.3
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (320)
.++|+|+||+||||+|+...+..+|+.++.++|.+... .+.+...+|.+........ ..
T Consensus 10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~---~~------ 68 (229)
T PRK13226 10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPIT------------LAQLRPVVSKGARAMLAVA---FP------ 68 (229)
T ss_pred ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhhhHHHHHHHHH---hc------
Confidence 36899999999999999999999999999999975322 1344445554443322211 00
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
.......+++.+ .+.+.|...+. ....++||+.++|+.|++.|++++++||+........++.+ ++..+
T Consensus 69 ---~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~-~l~~~-- 137 (229)
T PRK13226 69 ---ELDAAARDALIP----EFLQRYEALIG-TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL-GWEQR-- 137 (229)
T ss_pred ---cCChHHHHHHHH----HHHHHHHHhhh-hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-Cchhc--
Confidence 011122222333 33344443322 23579999999999999999999999999988888888886 99888
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCch-hhccccceecccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAE-QDFKDAIAIYPDLSN 303 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~-~~l~~~~~~~~~~~~ 303 (320)
|+.++++++++..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|++.++.... +.+.. ..+++..
T Consensus 138 f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~---~~~~~~i 214 (229)
T PRK13226 138 CAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLA---WQADVLV 214 (229)
T ss_pred ccEEEecCcCCCCCCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhh---cCCCeee
Confidence 8999999888899999999999999999999999999999999999999999999998876422 11211 1244444
Q ss_pred cChhHHHHHH
Q 020871 304 VRLKDLELLL 313 (320)
Q Consensus 304 ~~~~~l~~~l 313 (320)
.++.+|.+.+
T Consensus 215 ~~~~el~~~~ 224 (229)
T PRK13226 215 EQPQLLWNPA 224 (229)
T ss_pred CCHHHHHHHh
Confidence 4566665554
No 9
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.98 E-value=5.2e-31 Score=220.36 Aligned_cols=208 Identities=23% Similarity=0.392 Sum_probs=156.6
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHH-HHHhcCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRW-YFKEHGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~ 144 (320)
++++|+||+||||+|+...+..++.+++.++|.+... .+.+...+|........ +....++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 69 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISR------------REELPDTLGLRIDQVVDLWYARQPWNG---- 69 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCH------------HHHHHHhhCCCHHHHHHHHHHhcCCCC----
Confidence 6999999999999999999999999999999876432 12344555554433332 222223211
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
....+....+.+. +...+. ....++||+.++|+.|+++|++++++||+........++.+ ++..+
T Consensus 70 -------~~~~~~~~~~~~~----~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~-- 134 (222)
T PRK10826 70 -------PSRQEVVQRIIAR----VISLIE-ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF-DLRDY-- 134 (222)
T ss_pred -------CCHHHHHHHHHHH----HHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC-cchhc--
Confidence 1112222222222 222222 34689999999999999999999999999999899899886 99999
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhh-ccccceecccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQD-FKDAIAIYPDLSN 303 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~-l~~~~~~~~~~~~ 303 (320)
|+.++++++++.+||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|+++++....+. ...++.++.++.+
T Consensus 135 f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~d 214 (222)
T PRK10826 135 FDALASAEKLPYSKPHPEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTE 214 (222)
T ss_pred ccEEEEcccCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHH
Confidence 999999999999999999999999999999999999999999999999999999999887654322 2334555555444
Q ss_pred c
Q 020871 304 V 304 (320)
Q Consensus 304 ~ 304 (320)
+
T Consensus 215 l 215 (222)
T PRK10826 215 L 215 (222)
T ss_pred H
Confidence 3
No 10
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.98 E-value=6.8e-31 Score=218.20 Aligned_cols=217 Identities=30% Similarity=0.481 Sum_probs=166.0
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHh-cCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKE-HGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 144 (320)
++++|||||||||+|++..+.++|.+++.++|+..+. +......|.........+.+ .+...
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~~---- 63 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISD-------------EEIRELHGGGIARIIDLLRKLAAGED---- 63 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCH-------------HHHHHHHCCChHHHHHHHHHHhcCCc----
Confidence 4799999999999999999999999999999987654 33444455554444433333 21110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
... . .....+........ .....+.||+.++|..|+++|++++++|++.+......++.+ |+.++
T Consensus 64 ------~~~-~---~~~~~~~~~~~~~~--~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~-gl~~~-- 128 (221)
T COG0637 64 ------PAD-L---AELERLLYEAEALE--LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARL-GLLDY-- 128 (221)
T ss_pred ------ccC-H---HHHHHHHHHHHHhh--hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHc-cChhh--
Confidence 000 0 01111111112121 345789999999999999999999999999999899999997 99999
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 304 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 304 (320)
|+.++.++++..+||+|+.|..++++||++|++||+|+|+.+++++|++|||.+|++..+... ...........+....
T Consensus 129 f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~-~~~~~~~~~~~~~~~~ 207 (221)
T COG0637 129 FDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDR-PHLDPLDAHGADTVLL 207 (221)
T ss_pred cchhccHHHHhcCCCCCHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCCCEEEEecCCCCc-cccchhhhhhcchhhc
Confidence 999999999999999999999999999999999999999999999999999999999884332 2344556666777777
Q ss_pred ChhHHHHHHHH
Q 020871 305 RLKDLELLLQN 315 (320)
Q Consensus 305 ~~~~l~~~l~~ 315 (320)
++.++...+..
T Consensus 208 ~~~~l~~~~~~ 218 (221)
T COG0637 208 DLAELPALLEA 218 (221)
T ss_pred cHHHHHHHHHh
Confidence 77777766653
No 11
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.98 E-value=2.2e-30 Score=220.84 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=143.1
Q ss_pred ccEEEEecCCccccchH-HHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-----------HHHHH
Q 020871 67 LQALIFDCDGVIIESEH-LHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-----------RWYFK 134 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 134 (320)
+++|+||+||||+|+.. .+..+|.+++.++|.+.+. +.+...+|.+.... ..+..
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 68 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITL-------------EEARGPMGLGKWDHIRALLKMPAVAERWRA 68 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccH-------------HHHHHhcCccHHHHHHHHhcCHHHHHHHHH
Confidence 78999999999999864 3578999999998875432 23333444443221 11222
Q ss_pred hcCCCCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHH
Q 020871 135 EHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (320)
Q Consensus 135 ~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~ 214 (320)
.+|.. .+.... +.+...+...+...+ .....++||+.++|+.|+++|++++|+||+....+...++
T Consensus 69 ~~~~~---------~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~ 134 (253)
T TIGR01422 69 KFGRL---------PTEADI----EAIYEAFEPLQLAKL-AEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAP 134 (253)
T ss_pred HhCCC---------CCHHHH----HHHHHHHHHHHHHHH-HhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 22321 111122 223333333333322 2346899999999999999999999999999999999999
Q ss_pred HhhCCccccCc-ceEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 215 NLIGMERFEGL-DCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 215 ~~~~l~~~~~f-d~v~~~~~~~~~KP~~~~~~~~~~~l~~~-~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
++ |+..+ | +.+++++++...||+|++|..+++++|+. |++|+||||+.+|+++|+++|+.+|+|.++..
T Consensus 135 ~~-gl~~~--f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 135 EA-ALQGY--RPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred HH-HhcCC--CCceEEccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 87 88877 5 89999999999999999999999999995 99999999999999999999999999988765
No 12
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.97 E-value=1.5e-30 Score=223.36 Aligned_cols=193 Identities=24% Similarity=0.346 Sum_probs=142.4
Q ss_pred CCccEEEEecCCccccchHH-HHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-HH----------H
Q 020871 65 QSLQALIFDCDGVIIESEHL-HRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RW----------Y 132 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~ 132 (320)
+++|+|+||+||||+|+... +..+|++++.++|.+.+. +.+...+|.+.... .. +
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 68 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITL-------------EEARGPMGLGKWDHIRALLKMPRVAARW 68 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHhcHHHHHHH
Confidence 46899999999999998643 468999999999875432 23334444433221 11 1
Q ss_pred HHhcCCCCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHH
Q 020871 133 FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (320)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~ 212 (320)
...+|.. ....... .+...+...+...+ .....++||+.++|+.|+++|++++|+||+....+...
T Consensus 69 ~~~~g~~---------~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~ 134 (267)
T PRK13478 69 QAVFGRL---------PTEADVD----ALYAAFEPLQIAKL-ADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVV 134 (267)
T ss_pred HHHhCCC---------CCHHHHH----HHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHH
Confidence 1122211 1111222 22223333333332 23458999999999999999999999999999988888
Q ss_pred HHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~-~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
++.+ ++..++ |+.+++++++...||+|++|..+++++|+. +++|+||||+.+|+++|+++|+.+|+|.++..
T Consensus 135 l~~~-~l~~~~-~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 135 VPLA-AAQGYR-PDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred HHHH-hhcCCC-ceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 8886 776651 488999999999999999999999999996 69999999999999999999999999988765
No 13
>PRK11587 putative phosphatase; Provisional
Probab=99.97 E-value=1.6e-30 Score=216.70 Aligned_cols=206 Identities=19% Similarity=0.343 Sum_probs=149.9
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (320)
|++|+|+||+||||+|+...+..+|+++++++|++.. +......|.+.......+.. +.
T Consensus 1 M~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~--------------~~~~~~~g~~~~~~~~~~~~-~~------ 59 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPD--------------EVLNFIHGKQAITSLRHFMA-GA------ 59 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHH--------------HHHHHHcCCCHHHHHHHHhc-cC------
Confidence 4689999999999999999999999999999997421 11222234443332221110 11
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
.. +++.+.+... ..+.... .....++||+.++|+.|+++|++++++||+........++.. ++. +
T Consensus 60 -----~~---~~~~~~~~~~--~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~-~l~-~-- 124 (218)
T PRK11587 60 -----SE---AEIQAEFTRL--EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA-GLP-A-- 124 (218)
T ss_pred -----Cc---HHHHHHHHHH--HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhc-CCC-C--
Confidence 11 1111222111 1111111 234689999999999999999999999999887776667665 774 4
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 304 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 304 (320)
|+.+++++++...||+|++|..+++++|++|++|+||||+..|+++|+++|+.+|++.++... .....+++++.++.++
T Consensus 125 ~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el 203 (218)
T PRK11587 125 PEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQL 203 (218)
T ss_pred ccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhhe
Confidence 678888888888999999999999999999999999999999999999999999999876533 3344567777777766
Q ss_pred Chh
Q 020871 305 RLK 307 (320)
Q Consensus 305 ~~~ 307 (320)
.+.
T Consensus 204 ~~~ 206 (218)
T PRK11587 204 TVT 206 (218)
T ss_pred eEE
Confidence 543
No 14
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.97 E-value=3.7e-30 Score=214.04 Aligned_cols=193 Identities=22% Similarity=0.355 Sum_probs=149.5
Q ss_pred EEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-HHHHHhcCCCCccccCCCC
Q 020871 70 LIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIFDNPP 148 (320)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~ 148 (320)
||||+||||+|+...+..+++.+++++|.+... .+.+...+|.+.... ..++...+..
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~--------- 59 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPAT------------LARVIGFIGNGVPVLMERVLAWAGQE--------- 59 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhcccHHHHHHHHhhccccc---------
Confidence 699999999999999999999999999885322 123444555554333 2233333321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE
Q 020871 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (320)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v 228 (320)
.+.. ..+.+.+.+.+.|...+. ....++||+.++|+.|+++|++++|+||+....+...++++ |+..+ |+.+
T Consensus 60 ~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~--f~~~ 131 (213)
T TIGR01449 60 PDAQ----RVAELRKLFDRHYEEVAG-ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL-GLAKY--FSVL 131 (213)
T ss_pred cChH----HHHHHHHHHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CcHhh--CcEE
Confidence 1111 123333444445554432 24579999999999999999999999999999999999997 99988 9999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhc
Q 020871 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF 291 (320)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l 291 (320)
++++++...||+|++|..+++++|++|++|+||||+.+|+++|+++|+.++++.++....+.+
T Consensus 132 ~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l 194 (213)
T TIGR01449 132 IGGDSLAQRKPHPDPLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAI 194 (213)
T ss_pred EecCCCCCCCCChHHHHHHHHHcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcch
Confidence 999999999999999999999999999999999999999999999999999998876544333
No 15
>PLN02940 riboflavin kinase
Probab=99.97 E-value=4.7e-30 Score=229.33 Aligned_cols=210 Identities=21% Similarity=0.377 Sum_probs=163.1
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhh-HHHHHHhcCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK-MRWYFKEHGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 144 (320)
.+++|+||+||||+|+...+..+|..+++++|..... +.+...+|.+... ...++.+++++.
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~---- 72 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDG-------------REAQKIVGKTPLEAAATVVEDYGLPC---- 72 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHHHhCCCC----
Confidence 5999999999999999999999999999999875432 3345566655443 344555555431
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
..+++.+.+.+. +.... ....++||+.++|+.|++.|++++|+||+....+...++...++..+
T Consensus 73 --------~~~~~~~~~~~~----~~~~~--~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~-- 136 (382)
T PLN02940 73 --------STDEFNSEITPL----LSEQW--CNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKES-- 136 (382)
T ss_pred --------CHHHHHHHHHHH----HHHHH--ccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhh--
Confidence 112222333222 22222 23579999999999999999999999999998888888733489888
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV 304 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~ 304 (320)
||.+++++++...||+|++|..+++++|++|++|++|||+.+|+++|+++|+.+|++.++.........++.++.++.++
T Consensus 137 Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el 216 (382)
T PLN02940 137 FSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDL 216 (382)
T ss_pred CCEEEehhhcCCCCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHc
Confidence 99999999999999999999999999999999999999999999999999999999988754443445667777777766
Q ss_pred ChhH
Q 020871 305 RLKD 308 (320)
Q Consensus 305 ~~~~ 308 (320)
...+
T Consensus 217 ~~~~ 220 (382)
T PLN02940 217 QPEK 220 (382)
T ss_pred CHHH
Confidence 5444
No 16
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1e-29 Score=216.95 Aligned_cols=213 Identities=18% Similarity=0.222 Sum_probs=159.2
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccc
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTI 143 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 143 (320)
..++++|+||+||||+|+...+..+++++++++|.+... . +.+....|... ..+++.++++
T Consensus 59 ~~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~---------~---~~~~~~~g~~~---~~i~~~~~~~---- 119 (273)
T PRK13225 59 PQTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPID---------E---RDYAQLRQWSS---RTIVRRAGLS---- 119 (273)
T ss_pred hhhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCC---------H---HHHHHHhCccH---HHHHHHcCCC----
Confidence 346999999999999999999999999999999986433 1 22333444332 2333333321
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcccc
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~ 223 (320)
....+++. ..+.+.+.... ...+++||+.++|+.|+++|++++|+||+....+...++.+ |+..+
T Consensus 120 -------~~~~~~~~----~~~~~~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~-gl~~~- 184 (273)
T PRK13225 120 -------PWQQARLL----QRVQRQLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ-GLRSL- 184 (273)
T ss_pred -------HHHHHHHH----HHHHHHHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CChhh-
Confidence 12222222 22333333322 34678999999999999999999999999999999999997 99988
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
|+.+++++++. ++++.|..++++++++|++|+||||+.+|+++|+++|+.+|++.++....+.+.. ..+++..
T Consensus 185 -F~~vi~~~~~~---~k~~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~---~~ad~~i 257 (273)
T PRK13225 185 -FSVVQAGTPIL---SKRRALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVA---ACPDWLL 257 (273)
T ss_pred -eEEEEecCCCC---CCHHHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHH---CCCCEEE
Confidence 89888776653 4568999999999999999999999999999999999999999998776554532 1244555
Q ss_pred cChhHHHHHHHHhh
Q 020871 304 VRLKDLELLLQNVV 317 (320)
Q Consensus 304 ~~~~~l~~~l~~~~ 317 (320)
.++.+|.+++.+++
T Consensus 258 ~~~~eL~~~~~~~~ 271 (273)
T PRK13225 258 ETPSDLLQAVTQLM 271 (273)
T ss_pred CCHHHHHHHHHHHh
Confidence 56788888777665
No 17
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.6e-29 Score=216.70 Aligned_cols=218 Identities=21% Similarity=0.288 Sum_probs=160.3
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (320)
..+|+|+||+||||+|+...+..++..++.++|.+... .+.+....|.+...+...+-... +
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~l~~~------~ 72 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAG------------LEAVRHWVGNGAPVLVRRALAGS------I 72 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCC------------HHHHHHHhChhHHHHHHHHhccc------c
Confidence 36899999999999999999999999999999986432 12344455555433322111000 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
.....+.. ..+.+.+.+.+.|... .....++||+.++|+.|++.|++++++||+....+...++.+ ++..+
T Consensus 73 ~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~-~i~~~-- 143 (272)
T PRK13223 73 DHDGVDDE----LAEQALALFMEAYADS--HELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM-KIGRY-- 143 (272)
T ss_pred cccCCCHH----HHHHHHHHHHHHHHhc--CcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc-CcHhh--
Confidence 00111111 2233334444444432 123568999999999999999999999999998888888886 99988
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhcc--ccceeccccc
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK--DAIAIYPDLS 302 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~--~~~~~~~~~~ 302 (320)
|+.++++++++..||+|++|..+++++|++|++|++|||+.+|+++|+++|+.+++|.++......+. .+++++.
T Consensus 144 f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~--- 220 (272)
T PRK13223 144 FRWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVID--- 220 (272)
T ss_pred CeEEEecCCCCCCCCCcHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEEC---
Confidence 89999999999999999999999999999999999999999999999999999999988766544433 3444443
Q ss_pred ccChhHHHHHHH
Q 020871 303 NVRLKDLELLLQ 314 (320)
Q Consensus 303 ~~~~~~l~~~l~ 314 (320)
++.+|..++.
T Consensus 221 --~l~el~~~~~ 230 (272)
T PRK13223 221 --DLRALLPGCA 230 (272)
T ss_pred --CHHHHHHHHh
Confidence 4555555443
No 18
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.97 E-value=2.3e-29 Score=207.87 Aligned_cols=202 Identities=27% Similarity=0.423 Sum_probs=151.9
Q ss_pred EEEecCCccccchHHHHHHHHHHHHh-cccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccccCCCC
Q 020871 70 LIFDCDGVIIESEHLHRQAYNDAFSH-FNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPP 148 (320)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (320)
|+||+||||+|+...+.+++++++.+ +|.+... .+.+....|.... ..++..|++
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~---~~~~~~~~~--------- 56 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAP------------FEEYRRHLGRYFP---DIMRIMGLP--------- 56 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCC------------HHHHHHHhCccHH---HHHHHcCCC---------
Confidence 68999999999999999999999987 4654222 2344555554433 333333322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE
Q 020871 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (320)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v 228 (320)
.. .. +. .....+. . .....++||+.++|+.|+++|++++++||+....+...++++ |+..+ |+.+
T Consensus 57 --~~-~~---~~---~~~~~~~-~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-~l~~~--f~~i 121 (205)
T TIGR01454 57 --LE-ME---EP---FVRESYR-L--AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL-GLLPL--FDHV 121 (205)
T ss_pred --HH-HH---HH---HHHHHHH-h--hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc-CChhh--eeeE
Confidence 00 00 11 1111221 1 234689999999999999999999999999999898888886 99988 9999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhH
Q 020871 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKD 308 (320)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~ 308 (320)
+++++...+||+|++|..+++++|++|++|+||||+.+|+++|+++|+.++++.++....+.+.. ..+++...++.+
T Consensus 122 ~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~---~~~~~~~~~~~~ 198 (205)
T TIGR01454 122 IGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLA---ARPDFLLRKPQS 198 (205)
T ss_pred EecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhh---cCCCeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999988766555532 113333335566
Q ss_pred HHHHH
Q 020871 309 LELLL 313 (320)
Q Consensus 309 l~~~l 313 (320)
|.+++
T Consensus 199 l~~~~ 203 (205)
T TIGR01454 199 LLALC 203 (205)
T ss_pred HHHHh
Confidence 66554
No 19
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.7e-28 Score=205.96 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=162.7
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHH-HHHhcCCCCccc
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRW-YFKEHGWPSSTI 143 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 143 (320)
+++++|+||+||||+|+...+..++..+++++|.+... .+.+...+|.+...+.. .+...+.
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~----- 66 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAG------------EERVRTWVGNGADVLVERALTWAGR----- 66 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCC------------HHHHHHHhCccHHHHHHHHHhhccC-----
Confidence 57999999999999999988999999999998876433 23444555555443322 2222111
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcccc
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE 223 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~ 223 (320)
....... +.+...+.+.|..... ....++||+.++|+.|++.|++++++||+........++.+ ++..+
T Consensus 67 ----~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~- 135 (226)
T PRK13222 67 ----EPDEELL----EKLRELFDRHYAENVA-GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL-GIADY- 135 (226)
T ss_pred ----CccHHHH----HHHHHHHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCccC-
Confidence 1112222 2233334444444321 23579999999999999999999999999998888899886 99888
Q ss_pred CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 224 GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 224 ~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
|+.+++++++...||+|++|..+++++++++++|++|||+.+|+++|+++|+.++++.++......+. ...+++..
T Consensus 136 -f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~---~~~~~~~i 211 (226)
T PRK13222 136 -FSVVIGGDSLPNKKPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIA---LSEPDVVI 211 (226)
T ss_pred -ccEEEcCCCCCCCCcChHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchh---hcCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999988765333322 11233444
Q ss_pred cChhHHHHHHHH
Q 020871 304 VRLKDLELLLQN 315 (320)
Q Consensus 304 ~~~~~l~~~l~~ 315 (320)
.++.+|..+++.
T Consensus 212 ~~~~~l~~~l~~ 223 (226)
T PRK13222 212 DHFAELLPLLGL 223 (226)
T ss_pred CCHHHHHHHHHH
Confidence 456777777654
No 20
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.97 E-value=9.7e-29 Score=200.97 Aligned_cols=184 Identities=29% Similarity=0.503 Sum_probs=141.1
Q ss_pred ccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-HHHHHhcCCCCccccC
Q 020871 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIFD 145 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~ 145 (320)
+++|+||+||||+|+...+..++.++++++|.+.+. +......|.+.... ...+..++..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~------ 61 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDK-------------QYNTSLGGLSREDILRAILKLRKPG------ 61 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCH-------------HHHHHcCCCCHHHHHHHHHHhcCCC------
Confidence 579999999999999999999999999999875321 12223334433332 3333333211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCc
Q 020871 146 NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL 225 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~f 225 (320)
.+... .+.+.+.+.+.|.+.+......++||+.++|+.|++.|++++++||+ ..+...++.. |+..+ |
T Consensus 62 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~-~l~~~--f 129 (185)
T TIGR02009 62 ---LSLET----IHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL-GLTDY--F 129 (185)
T ss_pred ---CCHHH----HHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc-ChHHH--C
Confidence 11122 22333444445555443344689999999999999999999999998 5577788886 99999 9
Q ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 226 DCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 226 d~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
+.++++++.+..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+|+|
T Consensus 130 ~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 130 DAIVDADEVKEGKPHPETFLLAAELLGVSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CEeeehhhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999999999999999999999999999999999999998864
No 21
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=1.2e-28 Score=200.88 Aligned_cols=184 Identities=27% Similarity=0.469 Sum_probs=141.8
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-HHHHHhcCCCCcc
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSST 142 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~ 142 (320)
+.++++|+||+||||+|+...+..+|..++.++|.+.+. +.+....|...... ...+..++..
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~--- 65 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDE-------------QAMVALNGSPTWRIAQAIIELNQAD--- 65 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCCHHHHHHHHHHHhCCC---
Confidence 446899999999999999999999999999999875422 23444455444332 3333333321
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
...++ +...+...+.... .....++|+ .++|..|++. ++++|+||+....+...++++ |+..+
T Consensus 66 ---------~~~~~----~~~~~~~~~~~~~-~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~-~l~~~ 128 (188)
T PRK10725 66 ---------LDPHA----LAREKTEAVKSML-LDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHL-GLRRY 128 (188)
T ss_pred ---------CCHHH----HHHHHHHHHHHHH-hccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC-CcHhH
Confidence 01111 2222223333332 234567886 5899999876 899999999999999999997 99999
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEe
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~ 282 (320)
|+.++++++++..||+|++|..+++++|++|++||||||+.+|+++|+++|+.+|++.
T Consensus 129 --fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 129 --FDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred --ceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999874
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=9.6e-29 Score=206.62 Aligned_cols=185 Identities=26% Similarity=0.449 Sum_probs=139.9
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhh-HHHHHHhcCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK-MRWYFKEHGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 144 (320)
++++|+||+||||+|+...+.++|.+++.++|++... ++ .+....|.+... ...++..+|++.
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~---------~~---~~~~~~g~~~~~~~~~~~~~~~~~~---- 66 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSL---------EE---VFKRFKGVKLYEIIDIISKEHGVTL---- 66 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCH---------HH---HHHHhcCCCHHHHHHHHHHHhCCCC----
Confidence 5899999999999999999999999999999976432 11 122333433333 233444455421
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~ 224 (320)
..+++. ..+.+.+...+ .....++||+.++|+.| +++++|+||+....+...++.. ++..+
T Consensus 67 --------~~~~~~----~~~~~~~~~~~-~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~-~l~~~-- 127 (221)
T PRK10563 67 --------AKAELE----PVYRAEVARLF-DSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT-GMLHY-- 127 (221)
T ss_pred --------CHHHHH----HHHHHHHHHHH-HccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc-ChHHh--
Confidence 112222 22222222221 23468999999999999 4899999999988899889886 99988
Q ss_pred cc-eEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 225 LD-CFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 225 fd-~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
|+ .++++++++..||+|++|..+++++|++|++|+||||+.+|+++|+++|+.++++..+.
T Consensus 128 F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~ 189 (221)
T PRK10563 128 FPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGMEVFYFCADP 189 (221)
T ss_pred CcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCC
Confidence 85 67788889999999999999999999999999999999999999999999999886543
No 23
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=8.1e-29 Score=207.16 Aligned_cols=107 Identities=24% Similarity=0.450 Sum_probs=101.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
..++||+.++|+.|+++|++++++||+........++.+ |+..+ |+.++++++++..||+|++|..+++++|++|++
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~--f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL-GVRDF--FDAVITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC-ChHHh--ccEEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 579999999999999999999999999988888889886 99998 999999999999999999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCeEEEEeCCCCc
Q 020871 258 CLVVEDSV-IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 258 ~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
|+||||+. +|+.+|+++|+.+|++.++...
T Consensus 170 ~~~igDs~~~di~~A~~aG~~~i~~~~~~~~ 200 (221)
T TIGR02253 170 AVMVGDRLDKDIKGAKNLGMKTVWINQGKSS 200 (221)
T ss_pred EEEECCChHHHHHHHHHCCCEEEEECCCCCc
Confidence 99999998 8999999999999999887653
No 24
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.97 E-value=1.3e-28 Score=200.16 Aligned_cols=182 Identities=28% Similarity=0.519 Sum_probs=138.5
Q ss_pred EEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhh-HHHHHHhcCCCCccccCCC
Q 020871 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK-MRWYFKEHGWPSSTIFDNP 147 (320)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 147 (320)
+|+||+||||+|+...+..+|+++++++|++... +......|.+... +...+.+.|+.
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~g~~~~~~~~~~~~~~~~~-------- 59 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDE-------------EFNESLKGVSREDSLERILDLGGKK-------- 59 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCH-------------HHHHHhcCCChHHHHHHHHHhcCCC--------
Confidence 5899999999999999999999999999886432 1223344444333 33444554542
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHh-CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc
Q 020871 148 PVTDDDQAKLIDLIQDWKTERYQQIIKS-GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD 226 (320)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd 226 (320)
.+.....++.+. +.+.|.+.+.. ....++||+.++|+.|+++|++++++||+.. ....++.+ |+..+ |+
T Consensus 60 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~-~l~~~--f~ 129 (185)
T TIGR01990 60 -YSEEEKEELAER----KNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKL-GLIDY--FD 129 (185)
T ss_pred -CCHHHHHHHHHH----HHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhc-CcHhh--Cc
Confidence 112222222222 33333333221 2347899999999999999999999998754 45677886 99988 99
Q ss_pred eEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 227 CFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 227 ~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
.++++++++..||+|++|..++++++++|++|+||||+.+|+++|+++|+.+|+|
T Consensus 130 ~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 130 AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAGMFAVGV 184 (185)
T ss_pred EEEehhhcCCCCCChHHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcCCEEEec
Confidence 9999999999999999999999999999999999999999999999999999987
No 25
>PRK09449 dUMP phosphatase; Provisional
Probab=99.96 E-value=2.2e-28 Score=204.97 Aligned_cols=128 Identities=22% Similarity=0.367 Sum_probs=107.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC-C
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE-K 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~-~ 256 (320)
..++||+.++|+.|+ .|++++++||+........++++ |+..+ ||.++++++++..||+|++|..+++++|+.+ +
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~-~l~~~--fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 169 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT-GLRDY--FDLLVISEQVGVAKPDVAIFDYALEQMGNPDRS 169 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC-ChHHH--cCEEEEECccCCCCCCHHHHHHHHHHcCCCCcc
Confidence 579999999999999 57999999999999888888886 99998 9999999999999999999999999999854 7
Q ss_pred CEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 257 DCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 257 ~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
+|+||||+. +|+++|+++|+.+++++++.... . ....+++...++.+|.+++.
T Consensus 170 ~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~--~---~~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 170 RVLMVGDNLHSDILGGINAGIDTCWLNAHGREQ--P---EGIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred cEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCC--C---CCCCCeEEECCHHHHHHHHh
Confidence 999999998 69999999999999997543221 1 11234555556777777665
No 26
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.96 E-value=8.8e-29 Score=203.32 Aligned_cols=106 Identities=23% Similarity=0.388 Sum_probs=100.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
..++||+.++|+.|+++|++++++||++...+...++++ |+..+ ||.++++++++..||+|++|..+++++|++|++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~-gl~~~--fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA-GLDDP--FDAVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC-CChhh--hheeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 578999999999999999999999999999999999886 99988 999999999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 258 CLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
|+||||+.+|+++|+++|+.+|++++++.
T Consensus 168 ~~~vgD~~~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 168 VLFVASNPWDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred EEEEeCCHHHHHHHHHCCCcEEEecCCCC
Confidence 99999999999999999999999988653
No 27
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.96 E-value=6.7e-28 Score=201.07 Aligned_cols=131 Identities=21% Similarity=0.347 Sum_probs=110.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
....++||+.++|+.|+++|++++++||+....+...++++ |+..+ |+.++++++++..||+|++|..+++++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~-~l~~~--fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p 166 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT-GLDAH--LDLLLSTHTFGYPKEDQRLWQAVAEHTGLKA 166 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC-CcHHH--CCEEEEeeeCCCCCCCHHHHHHHHHHcCCCh
Confidence 34689999999999999999999999999999888888886 99998 9999999999999999999999999999999
Q ss_pred CCEEEEecCHhhHHHHHHcCCe-EEEEeCCCCchhhccccceecccccccChhHHHHHHHHh
Q 020871 256 KDCLVVEDSVIGLQAATRAGMA-CVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNV 316 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~-~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 316 (320)
++|+||||+..|+++|+++|+. +++|.++...... .+....+ +++++.++++.+
T Consensus 167 ~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~l 221 (224)
T PRK14988 167 ERTLFIDDSEPILDAAAQFGIRYCLGVTNPDSGIAE--KQYQRHP-----SLNDYRRLIPSL 221 (224)
T ss_pred HHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCCCccc--hhccCCC-----cHHHHHHHhhhh
Confidence 9999999999999999999997 5667776544322 2222222 466677777654
No 28
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.96 E-value=5.8e-28 Score=203.64 Aligned_cols=217 Identities=14% Similarity=0.199 Sum_probs=146.5
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcC------------ChhhHHHHH
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGG------------GKPKMRWYF 133 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 133 (320)
++|+|+||+||||+|+...+..+++.+++.++..... .-.+.....+.++..++. ....+...+
T Consensus 9 ~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (238)
T PRK10748 9 RISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPA----LRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAM 84 (238)
T ss_pred CceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcc----hhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHH
Confidence 6899999999999999999999898887665321100 000112222222222111 011233445
Q ss_pred HhcCCCCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHH
Q 020871 134 KEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL 213 (320)
Q Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l 213 (320)
..+|++ ....+... +.....+.... ....++||+.++|+.|++. ++++++||++.. +
T Consensus 85 ~~~g~~-----------~~~~~~~~----~~~~~~~~~~~--~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~ 141 (238)
T PRK10748 85 LDAGLS-----------AEEASAGA----DAAMINFAKWR--SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P 141 (238)
T ss_pred HHcCCC-----------HHHHHHHH----HHHHHHHHHHh--hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H
Confidence 555543 11111111 11112222221 2357999999999999986 999999998875 2
Q ss_pred HHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhcc
Q 020871 214 ENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFK 292 (320)
Q Consensus 214 ~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~ 292 (320)
+.. |+..+ |+.++++++++..||+|++|..+++++|++|++|+||||+. .|+.+|+++|+.++|++.+...... .
T Consensus 142 ~~~-gl~~~--fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~-~ 217 (238)
T PRK10748 142 ELF-GLGDY--FEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQ-T 217 (238)
T ss_pred HHC-CcHHh--hceeEecccCCcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccc-c
Confidence 454 99999 99999999999999999999999999999999999999995 9999999999999999886533111 1
Q ss_pred ccceecccccccChhHHHHHH
Q 020871 293 DAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 293 ~~~~~~~~~~~~~~~~l~~~l 313 (320)
....+.|++...++.+|.++|
T Consensus 218 ~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 218 WDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred ccccCCCCEEECCHHHHHhhC
Confidence 233456777666666666553
No 29
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=2.3e-27 Score=235.13 Aligned_cols=220 Identities=30% Similarity=0.435 Sum_probs=168.9
Q ss_pred CCCCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHH-HHhcCCCC
Q 020871 62 ASSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWY-FKEHGWPS 140 (320)
Q Consensus 62 ~~~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~ 140 (320)
..++++++|+|||||||+|+...+.++|.++++++|++... +.+...+|.+...+... ...++++.
T Consensus 70 ~~~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~-------------e~~~~~~G~~~~~~~~~~~~~~~l~~ 136 (1057)
T PLN02919 70 EEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTV-------------EDFVPFMGTGEANFLGGVASVKGVKG 136 (1057)
T ss_pred CcCCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCH-------------HHHHHHhCCCHHHHHHHHHHhcCCCC
Confidence 44678999999999999999999999999999999986432 33455566655444322 22233210
Q ss_pred ccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 141 STIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
...++..+.+.+.+.+.|... ....++||+.++|+.|+++|++++|+||+....+...++++ |+.
T Consensus 137 -----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~-gl~ 201 (1057)
T PLN02919 137 -----------FDPDAAKKRFFEIYLEKYAKP---NSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA-GLP 201 (1057)
T ss_pred -----------CCHHHHHHHHHHHHHHHhhhc---ccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc-CCC
Confidence 011222222222222222211 22347999999999999999999999999999999999887 885
Q ss_pred -cccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhcc--cccee
Q 020871 221 -RFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFK--DAIAI 297 (320)
Q Consensus 221 -~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~--~~~~~ 297 (320)
.+ |+.+++++++...||+|++|..+++++|+.|++|+||||+..|+++|+++||.+|++.++.. .+++. .++++
T Consensus 202 ~~~--Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~-~~~L~~~~a~~v 278 (1057)
T PLN02919 202 LSM--FDAIVSADAFENLKPAPDIFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLS-EEILKDAGPSLI 278 (1057)
T ss_pred hhH--CCEEEECcccccCCCCHHHHHHHHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCC-HHHHhhCCCCEE
Confidence 67 89999999999999999999999999999999999999999999999999999999998764 34443 56788
Q ss_pred cccccccChhHHHHH
Q 020871 298 YPDLSNVRLKDLELL 312 (320)
Q Consensus 298 ~~~~~~~~~~~l~~~ 312 (320)
+.++.++++.++...
T Consensus 279 i~~l~el~~~~~~~~ 293 (1057)
T PLN02919 279 RKDIGNISLSDILTG 293 (1057)
T ss_pred ECChHHCCHHHHHhc
Confidence 999999987777543
No 30
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.96 E-value=5.1e-28 Score=199.62 Aligned_cols=187 Identities=22% Similarity=0.382 Sum_probs=132.6
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHH------h----cCChhh-----HHHH
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQ------I----GGGKPK-----MRWY 132 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~-----~~~~ 132 (320)
|+|+||+||||+|+...+..++.++++++|++..... ....+.+.+... + |..... +...
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 75 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDE-----LEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDT 75 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHH-----HHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999998653300 000111111111 0 111111 1122
Q ss_pred HHhcCCCCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHH
Q 020871 133 FKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (320)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~ 212 (320)
+...|.+ +.. .+...+.+.+..........++||+.++|+.|+++|++++|+||+... ....
T Consensus 76 ~~~~~~~----------~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~ 137 (203)
T TIGR02252 76 FGRAGVP----------DPE-------SFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGL 137 (203)
T ss_pred HHhcCCC----------Cch-------hHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHH
Confidence 2222210 011 111222222222211233578999999999999999999999998875 4677
Q ss_pred HHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHcCCeEEE
Q 020871 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVI 280 (320)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~ 280 (320)
++.+ |+..+ |+.++++++++..||+|++|..+++++|++|++|+||||+. +|+++|+++|+.+||
T Consensus 138 l~~~-~l~~~--fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 138 LEAL-GLLEY--FDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HHHC-CcHHh--cceEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 7776 99888 99999999999999999999999999999999999999998 899999999999875
No 31
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.96 E-value=1.6e-27 Score=199.68 Aligned_cols=186 Identities=18% Similarity=0.335 Sum_probs=137.7
Q ss_pred ccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHH-------h--cC-Chhh-----HHH
Q 020871 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQ-------I--GG-GKPK-----MRW 131 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~-~~~~-----~~~ 131 (320)
+|+|+||+||||+|+......++.+++.++|+.... .....+... + +. .... +..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTE----------DMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSA 70 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccH----------HHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 589999999999999999999999999988875422 111111100 0 00 0000 011
Q ss_pred HHHhcCCCCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHH
Q 020871 132 YFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL 211 (320)
Q Consensus 132 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~ 211 (320)
.++..+... . .+.+.+.|...+. ....++||+.++|+.|+++ ++++++||+....+..
T Consensus 71 ~~~~~~~~~------------~--------~~~~~~~~~~~~~-~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~ 128 (224)
T TIGR02254 71 LLKEYNTEA------------D--------EALLNQKYLRFLE-EGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYK 128 (224)
T ss_pred HHHHhCCCC------------c--------HHHHHHHHHHHHh-ccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHH
Confidence 111111100 0 0012223333321 2357999999999999999 9999999999998998
Q ss_pred HHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCc
Q 020871 212 CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 212 ~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.++.+ ++..+ ||.++++++++..||+|++|..+++++ |++|++|+||||+. +|+++|+++|+.+++++++...
T Consensus 129 ~l~~~-~l~~~--fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~ 203 (224)
T TIGR02254 129 RLRKS-GLFPF--FDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHP 203 (224)
T ss_pred HHHHC-CcHhh--cCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCC
Confidence 89886 99999 999999999999999999999999999 99999999999998 7999999999999999876443
No 32
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.96 E-value=2.5e-27 Score=217.98 Aligned_cols=217 Identities=18% Similarity=0.247 Sum_probs=156.5
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHH-HhcCCCCcc
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYF-KEHGWPSST 142 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 142 (320)
.+++++|+||+||||+|+...+..+|++++.+++..... . .....+.+....|.+.......+ ...+
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~------~-~~~~~~~~~~~~G~~~~~~~~~l~~~~~----- 305 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLW------D-TVTPIDKYREIMGVPLPKVWEALLPDHS----- 305 (459)
T ss_pred HHhhhheeEccCCceecchhHHHHHHHHHHHHHhhhccc------C-CCCCHHHHHHHcCCChHHHHHHHhhhcc-----
Confidence 457899999999999999999999999999987421000 0 00002345556666655433222 1111
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
....+.+...+.+.+...+.....+++||+.++|+.|+++|++++|+||+....+...++.+ ++..+
T Consensus 306 ------------~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~-~l~~~ 372 (459)
T PRK06698 306 ------------LEIREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY-DLDQW 372 (459)
T ss_pred ------------hhHHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC-CcHhh
Confidence 01122333334444444333345689999999999999999999999999999999999986 99988
Q ss_pred cCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccccc
Q 020871 223 EGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLS 302 (320)
Q Consensus 223 ~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~ 302 (320)
|+.+++++++. .||+|+.|..++++++ |++|++|||+.+|+++|+++|+.+|++.++....+.+..++++
T Consensus 373 --f~~i~~~d~v~-~~~kP~~~~~al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~----- 442 (459)
T PRK06698 373 --VTETFSIEQIN-SLNKSDLVKSILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIV----- 442 (459)
T ss_pred --cceeEecCCCC-CCCCcHHHHHHHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEE-----
Confidence 99999998874 4677789999998875 6899999999999999999999999998876554444334444
Q ss_pred ccChhHHHHHHHH
Q 020871 303 NVRLKDLELLLQN 315 (320)
Q Consensus 303 ~~~~~~l~~~l~~ 315 (320)
..++.+|.+++..
T Consensus 443 i~~l~el~~~l~~ 455 (459)
T PRK06698 443 IDDLLELKGILST 455 (459)
T ss_pred eCCHHHHHHHHHH
Confidence 4456666666653
No 33
>PLN02811 hydrolase
Probab=99.95 E-value=2.6e-26 Score=191.55 Aligned_cols=204 Identities=22% Similarity=0.362 Sum_probs=151.1
Q ss_pred cCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhH-HHHHHhcCCCCccccCCCCCCch
Q 020871 74 CDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKM-RWYFKEHGWPSSTIFDNPPVTDD 152 (320)
Q Consensus 74 ~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~ 152 (320)
|||||+|+...+..+|.+++.++|++.+. +.+...+|.+.... ..++...+++. ..
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~-------------~~~~~~~G~~~~~~~~~~~~~~~~~~----------~~ 57 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDW-------------SLKAKMMGKKAIEAARIFVEESGLSD----------SL 57 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCH-------------HHHHHccCCCHHHHHHHHHHHhCCCC----------CC
Confidence 79999999999999999999999985321 23445566655443 33444444421 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCC
Q 020871 153 DQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD 232 (320)
Q Consensus 153 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~ 232 (320)
..+.+.+ .....+.... ....++||+.++|+.|++.|++++|+||+........+....++..+ |+.+++++
T Consensus 58 ~~~~~~~----~~~~~~~~~~--~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~--f~~i~~~~ 129 (220)
T PLN02811 58 SPEDFLV----EREAMLQDLF--PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSL--MHHVVTGD 129 (220)
T ss_pred CHHHHHH----HHHHHHHHHH--hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhh--CCEEEECC
Confidence 1111111 1222222221 23578999999999999999999999999876554433333367777 89999999
Q ss_pred --CCCCCCCCHHHHHHHHHHcC---CCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChh
Q 020871 233 --DVKQKKPDPSIYVTAAKRLG---ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLK 307 (320)
Q Consensus 233 --~~~~~KP~~~~~~~~~~~l~---~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 307 (320)
+++.+||+|++|..++++++ ++|++|+||||+..|+++|+++|+.+|++.++......+..++.++.++.++.+.
T Consensus 130 ~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~ 209 (220)
T PLN02811 130 DPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPE 209 (220)
T ss_pred hhhccCCCCCcHHHHHHHHHhCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHH
Confidence 88889999999999999997 9999999999999999999999999999988765544456677888888887766
Q ss_pred H
Q 020871 308 D 308 (320)
Q Consensus 308 ~ 308 (320)
+
T Consensus 210 ~ 210 (220)
T PLN02811 210 E 210 (220)
T ss_pred H
Confidence 6
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.95 E-value=1.1e-26 Score=187.00 Aligned_cols=174 Identities=26% Similarity=0.503 Sum_probs=135.2
Q ss_pred EEEecCCccccchHHHHHHHHHH-HHhcccCCCCccccCCCCChhHHHHHHHHhcCChhh-HHHHHHhcCCCCccccCCC
Q 020871 70 LIFDCDGVIIESEHLHRQAYNDA-FSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK-MRWYFKEHGWPSSTIFDNP 147 (320)
Q Consensus 70 viFD~DGTL~d~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 147 (320)
|+||+||||+|+...+.+++... +++++.+.. .+.++...+..... +..++..++..
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEIS-------------AEELRELFGKSYEEALERLLERFGID-------- 59 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHH-------------HHHHHHHTTSHHHHHHHHHHHHHHHH--------
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCC-------------HHHHHHHhCCCHHHHHHHhhhccchh--------
Confidence 79999999999999888888874 667766421 23444444433332 22333332110
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcce
Q 020871 148 PVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC 227 (320)
Q Consensus 148 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~ 227 (320)
...+.+. +.+........++||+.++|+.|+++|++++++||++...+...++++ |+..+ |+.
T Consensus 60 ----------~~~~~~~----~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~-~~~~~--f~~ 122 (176)
T PF13419_consen 60 ----------PEEIQEL----FREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL-GLDDY--FDE 122 (176)
T ss_dssp ----------HHHHHHH----HHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT-THGGG--CSE
T ss_pred ----------HHHHHHH----hhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc-ccccc--ccc
Confidence 1112222 222211245789999999999999999999999999999999999997 99988 999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 228 FLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 228 v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
++++++.+..||++++|..+++++|++|++|+||||+..|+++|+++|+.+|+|
T Consensus 123 i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 123 IISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp EEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred ccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 999999999999999999999999999999999999999999999999999986
No 35
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.95 E-value=8.8e-27 Score=195.92 Aligned_cols=131 Identities=26% Similarity=0.384 Sum_probs=115.6
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
.++++|++.+.|+.|+.. ++++++||+........++++ |+..+ ||.++.+++++..||+|++|..+++++|++|+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-gl~~~--Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~ 172 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-GLLDY--FDAVFISEDVGVAKPDPEIFEYALEKLGVPPE 172 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-CChhh--hheEEEecccccCCCCcHHHHHHHHHcCCCcc
Confidence 368999999999999999 999999999988899999997 89999 99999999999999999999999999999999
Q ss_pred CEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHH
Q 020871 257 DCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQN 315 (320)
Q Consensus 257 ~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 315 (320)
+|+||||+. ||+.+|+++||.+||++.+.... .... ..+++..-++.+|.+++.+
T Consensus 173 ~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~---~~~~-~~~~~~i~~l~~l~~~~~~ 228 (229)
T COG1011 173 EALFVGDSLENDILGARALGMKTVWINRGGKPL---PDAL-EAPDYEISSLAELLDLLER 228 (229)
T ss_pred eEEEECCChhhhhHHHHhcCcEEEEECCCCCCC---CCCc-cCCceEEcCHHHHHHHHhh
Confidence 999999999 68899999999999998876543 1222 5567677778888877764
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.94 E-value=2.9e-26 Score=190.30 Aligned_cols=108 Identities=21% Similarity=0.342 Sum_probs=93.9
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhh--HHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS--VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~--~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
...++||+.++|+.|+++|++++++||+.... ....+... ++..+ ||.++++++++..||+|++|..+++++|++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~-~l~~~--fd~v~~s~~~~~~KP~p~~~~~~~~~~g~~ 168 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPG-DIMAL--FDAVVESCLEGLRKPDPRIYQLMLERLGVA 168 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhh-hhHhh--CCEEEEeeecCCCCCCHHHHHHHHHHcCCC
Confidence 46799999999999999999999999987543 22233333 77778 999999999999999999999999999999
Q ss_pred CCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 255 EKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
|++|+||||+..|+.+|+++|+.+|++.++...
T Consensus 169 ~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~~~ 201 (211)
T TIGR02247 169 PEECVFLDDLGSNLKPAAALGITTIKVSDEEQA 201 (211)
T ss_pred HHHeEEEcCCHHHHHHHHHcCCEEEEECCHHHH
Confidence 999999999999999999999999999775433
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.94 E-value=1.8e-25 Score=181.48 Aligned_cols=99 Identities=22% Similarity=0.408 Sum_probs=91.8
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC----CCCCHHHHHHHHHHcC
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----KKPDPSIYVTAAKRLG 252 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----~KP~~~~~~~~~~~l~ 252 (320)
...++||+.++|+.|+ ++++++||+........++.+ |+..+ ||.++++++++. .||+|++|..+++++|
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~-gl~~~--fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 155 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL-GIEDC--FDGIFCFDTANPDYLLPKPSPQAYEKALREAG 155 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc-CcHhh--hCeEEEeecccCccCCCCCCHHHHHHHHHHhC
Confidence 3579999999999997 479999999999999999997 99988 999999999887 5999999999999999
Q ss_pred CCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 253 ISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
++|++|+||||+..|+++|+++|+.+++|
T Consensus 156 ~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 156 VDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred CCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 99999999999999999999999999875
No 38
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.94 E-value=5.6e-25 Score=180.46 Aligned_cols=180 Identities=21% Similarity=0.197 Sum_probs=128.0
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChh---------hHHHHHHhcCC
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKP---------KMRWYFKEHGW 138 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~ 138 (320)
++|+|||||||+|+...+..+++++++++|..... .+.+....|.+.. ....++.....
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 68 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVT------------HADIDHTKLAGNANNDWQLTHRLVVDGLNSASS 68 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCC------------HHHHHHHHHccCccCchHHHHHHHHHhhhcccc
Confidence 47999999999999999999999999999753222 1334445554321 11122211100
Q ss_pred CCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHH
Q 020871 139 PSSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIK--------SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI 210 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~ 210 (320)
.........+++. +.+.+.|..... .....+.+++.++|+.|++.|++++|+||+....+.
T Consensus 69 -------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~ 137 (197)
T TIGR01548 69 -------ERVRDAPTLEAVT----AQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAA 137 (197)
T ss_pred -------hhccCCccHHHHH----HHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHH
Confidence 0000112222222 223333322100 001235556699999999999999999999999999
Q ss_pred HHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc
Q 020871 211 LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 211 ~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
..++.+ |+..+ |+.+++++++.. ||+|+.|..+++++|++|++|+||||+.+|+++|+++
T Consensus 138 ~~l~~~-gl~~~--f~~~~~~~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 138 KFLTTH-GLEIL--FPVQIWMEDCPP-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHHc-Cchhh--CCEEEeecCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 999997 99999 999999999887 9999999999999999999999999999999999875
No 39
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.93 E-value=3.6e-24 Score=174.24 Aligned_cols=209 Identities=27% Similarity=0.380 Sum_probs=156.6
Q ss_pred CCCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHH-hcCCCCc
Q 020871 63 SSQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFK-EHGWPSS 141 (320)
Q Consensus 63 ~~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 141 (320)
....+.+++||+||||+|++..+.++|+.++.+||...+. +......|....++...+- ..+.+
T Consensus 6 ~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~-------------~~~~~~mG~~~~eaa~~~~~~~~dp-- 70 (222)
T KOG2914|consen 6 LSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPW-------------DVKVKSMGKRTSEAARLFVKKLPDP-- 70 (222)
T ss_pred cccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChH-------------HHHHHHcCCCHHHHHHHHHhhcCCC--
Confidence 3456889999999999999999999999999999985433 3344466666555554443 33322
Q ss_pred cccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 142 TIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
-..+++..+. .+....++ ....+.||+.++++.|+.+|++++++|+.++...+..+.++.++-.
T Consensus 71 ----------~s~ee~~~e~----~~~~~~~~--~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~ 134 (222)
T KOG2914|consen 71 ----------VSREEFNKEE----EEILDRLF--MNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK 134 (222)
T ss_pred ----------CCHHHHHHHH----HHHHHHhc--cccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH
Confidence 2223333332 33333332 3457899999999999999999999999999988888888744666
Q ss_pred ccCcceEEe--CCCCCCCCCCHHHHHHHHHHcCCCC-CCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceec
Q 020871 222 FEGLDCFLA--GDDVKQKKPDPSIYVTAAKRLGISE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY 298 (320)
Q Consensus 222 ~~~fd~v~~--~~~~~~~KP~~~~~~~~~~~l~~~~-~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~ 298 (320)
. |+.++. +.++..+||+|++|..+++++|..| +.|++|+|++..+++|+.|||.+|++++.......-..+..++
T Consensus 135 ~--f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~ 212 (222)
T KOG2914|consen 135 N--FSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLIL 212 (222)
T ss_pred h--cCCCeecCCccccCCCCCchHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceec
Confidence 6 777777 5678899999999999999999999 9999999999999999999999999988443322223445555
Q ss_pred cccccc
Q 020871 299 PDLSNV 304 (320)
Q Consensus 299 ~~~~~~ 304 (320)
.++.+.
T Consensus 213 ~~~~~~ 218 (222)
T KOG2914|consen 213 ESLEDF 218 (222)
T ss_pred cccccc
Confidence 554443
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.93 E-value=1.6e-24 Score=178.00 Aligned_cols=110 Identities=21% Similarity=0.352 Sum_probs=98.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.++||+.++|+.|++.|++++++||+........+....++..+ ||.++++++++..||+|++|..+++++|++|++|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~--fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 161 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAA--ADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADA 161 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHh--cCEEEEecccCCCCCCHHHHHHHHHHcCCChhHe
Confidence 58999999999999999999999999987666555443477778 9999999999999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhh
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQD 290 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~ 290 (320)
+||||+..|+++|+++|+.++++.++....+.
T Consensus 162 l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~ 193 (199)
T PRK09456 162 VFFDDNADNIEAANALGITSILVTDKQTIPDY 193 (199)
T ss_pred EEeCCCHHHHHHHHHcCCEEEEecCCccHHHH
Confidence 99999999999999999999999887555433
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=2.7e-24 Score=174.40 Aligned_cols=100 Identities=37% Similarity=0.707 Sum_probs=92.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
..++||+.++|+.|++.|++++++||+.... ...+.++ |+..+ |+.++++++++.+||+|+.|..+++++|++|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~-~l~~~--f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQEL-GLRDL--FDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhc-CCHHH--CCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999999999887 5555555 99988 999999999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEE
Q 020871 258 CLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
|+||||+..|+++|+++|+.+|+|
T Consensus 160 ~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 160 CLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEEcCCHHHHHHHHHcCCEEEeC
Confidence 999999999999999999999874
No 42
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.93 E-value=9.1e-26 Score=184.02 Aligned_cols=207 Identities=19% Similarity=0.287 Sum_probs=141.1
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCC-----
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGW----- 138 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----- 138 (320)
.+.+++|+||++|||+.........|..+.+.+|+++... .+...+......+......+|.
T Consensus 4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~-------------~~~~~~~~~~~~~~~~~p~~~~~~g~l 70 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDS-------------LIETIFRKDFKKMSEKGPFFGLYSGEL 70 (237)
T ss_pred ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHH-------------HHhHhhhHHHHhhcccCCcccccCCcc
Confidence 4579999999999999988888999999999999985431 1111111111000000000000
Q ss_pred CCc-----cccCCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHH
Q 020871 139 PSS-----TIFDNP-PVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (320)
Q Consensus 139 ~~~-----~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~ 212 (320)
+.. -+.... .......+...+.+ ....|.... ...+.+.+++.++++.||.+|+.++++||.+...- ..
T Consensus 71 ~~~~ww~~lv~~~f~~~~~~~~~~~~~~~---~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~ 145 (237)
T KOG3085|consen 71 TLSQWWPKLVESTFGKAGIDYEEELLENF---SFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LL 145 (237)
T ss_pred cHHHHHHHHHHHHhccccchhHHHHHhhh---hhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HH
Confidence 000 000000 00111111111111 111222211 23567888999999999999999999999988744 56
Q ss_pred HHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhc
Q 020871 213 LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF 291 (320)
Q Consensus 213 l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l 291 (320)
+... |+..+ ||.++.|++.+..||+|++|+.+++++++.|++|+||||+. ||+++|+++||.++.|.+.......+
T Consensus 146 l~~~-~l~~~--fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085|consen 146 LLPL-GLSAY--FDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred hhcc-CHHHh--hhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhh
Confidence 6665 99888 99999999999999999999999999999999999999999 79999999999999987766554433
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.92 E-value=5.3e-24 Score=167.83 Aligned_cols=154 Identities=24% Similarity=0.446 Sum_probs=119.0
Q ss_pred EEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccccCCCC
Q 020871 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPP 148 (320)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 148 (320)
+|+||+||||+|+...+..+|++++++++.. .+.+....|.+...+......
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~------------- 52 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGED---------------FQALKALRGLAEELLYRIATS------------- 52 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhccc---------------HHHHHHHHccChHHHHHHHHH-------------
Confidence 4899999999999999999999999988752 123333333222111111100
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE
Q 020871 149 VTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF 228 (320)
Q Consensus 149 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v 228 (320)
.+.+. . |. .....+||+.++|+.|++.|++++++||+........++.+ +..+ |+.+
T Consensus 53 ---------~~~~~----~-~~-----~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~--f~~i 109 (154)
T TIGR01549 53 ---------FEELL----G-YD-----AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDY--FDLI 109 (154)
T ss_pred ---------HHHHh----C-cc-----hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhc--CcEE
Confidence 11111 0 11 12357799999999999999999999999999888888774 5667 8999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcC
Q 020871 229 LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAG 275 (320)
Q Consensus 229 ~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG 275 (320)
+++++++ .||+|++|..+++++|++| +|+||||+..|+++|+++|
T Consensus 110 ~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 110 LGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred EecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 9999888 9999999999999999999 9999999999999999987
No 44
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=172.30 Aligned_cols=173 Identities=13% Similarity=0.160 Sum_probs=115.7
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhh-HHHHHHhcCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPK-MRWYFKEHGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~ 144 (320)
|+|+|+||+||||+|+. .++..+++++|++. +.+...+|.+... +... ++.
T Consensus 1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~---------------~~~~~~~g~~~~~~~~~~---~~~------ 52 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT---------------DHILKMIQDERFRDPGEL---FGC------ 52 (197)
T ss_pred CCcEEEEecCCceEchh----hccHHHHHhcCCCH---------------HHHHHHHhHhhhcCHHHH---hcc------
Confidence 48999999999999943 45667777787642 2333333332211 1111 110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcccc-
Q 020871 145 DNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFE- 223 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~- 223 (320)
+..... .+...+ +.... .....++||+.++|+.|++. ++++++||.........++.+ ++..++
T Consensus 53 -----~~~~~~----~~~~~~---~~~~~-~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~-~l~~~f~ 117 (197)
T PHA02597 53 -----DQELAK----KLIEKY---NNSDF-IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQF-NLNALFP 117 (197)
T ss_pred -----cHHHHH----HHhhhh---hHHHH-HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhC-CHHHhCC
Confidence 111111 111111 11111 12357999999999999997 568888998776555555554 666542
Q ss_pred -CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc--CCeEEEEeCCCC
Q 020871 224 -GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA--GMACVITYTSST 286 (320)
Q Consensus 224 -~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a--G~~~v~v~~~~~ 286 (320)
.|+.++++++. ||+|++|..+++++| |++|+||||+.+|+++|+++ |+.+|+++++..
T Consensus 118 ~~f~~i~~~~~~---~~kp~~~~~a~~~~~--~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~ 178 (197)
T PHA02597 118 GAFSEVLMCGHD---ESKEKLFIKAKEKYG--DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER 178 (197)
T ss_pred CcccEEEEeccC---cccHHHHHHHHHHhC--CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh
Confidence 15777777663 677899999999999 88999999999999999999 999999988853
No 45
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=9.5e-24 Score=170.00 Aligned_cols=166 Identities=19% Similarity=0.305 Sum_probs=117.4
Q ss_pred EEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCC-hhHHHH-HHHHhcCChh-------hHHHHHHhcCCC
Q 020871 69 ALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWD-PEFYDV-LQNQIGGGKP-------KMRWYFKEHGWP 139 (320)
Q Consensus 69 ~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~-------~~~~~~~~~g~~ 139 (320)
+|+||+||||+|+...+..++..++.+.+..... |. .++... .....|.... ....++..+|++
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 73 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDL-------WRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLD 73 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHH-------HHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999998887764421000 00 011111 1222221111 233444444443
Q ss_pred CccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC
Q 020871 140 SSTIFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (320)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l 219 (320)
.. .. . .+.+...+ ..+.++||+.++|+ +++|+||+....+...++++ |+
T Consensus 74 ~~---------~~--------~----~~~~~~~~--~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~-~l 122 (175)
T TIGR01493 74 AE---------PK--------Y----GERLRDAY--KNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQA-GL 122 (175)
T ss_pred CC---------HH--------H----HHHHHHHH--hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC-CC
Confidence 10 00 1 11122211 23579999999998 37899999999999999887 99
Q ss_pred ccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc
Q 020871 220 ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 220 ~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
..+ |+.++++++++..||+|++|..+++++|++|++|+||||+.+|+.+|+++
T Consensus 123 ~~~--fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 123 PWY--FDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHH--HhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence 999 99999999999999999999999999999999999999999999999864
No 46
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.89 E-value=3.4e-22 Score=166.83 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=85.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEE-------eC---CCCCCCCCCHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFL-------AG---DDVKQKKPDPSIYVTA 247 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~-------~~---~~~~~~KP~~~~~~~~ 247 (320)
.+++||+.++|+.|+++|++++++||+....+...++.+ |+..+ |+..+ .+ .....++|++..|..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL-GLDAA--FANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCce--EeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 579999999999999999999999999999888888886 88877 54322 11 1223356789999999
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
++++++++++|+||||+.+|+++|+.+|+.+++
T Consensus 161 ~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred HHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEe
Confidence 999999999999999999999999999998654
No 47
>PLN02954 phosphoserine phosphatase
Probab=99.88 E-value=6.2e-21 Score=159.78 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=115.7
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHh-cCCCCcc
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKE-HGWPSST 142 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 142 (320)
++++|+|+||+||||++++ .+..+++++|... +..+..+...++ ...+.+.+.. .+...
T Consensus 9 ~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~------------~~~~~~~~~~~g-~~~~~~~~~~~~~~~~-- 68 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGE------------AVAEWTAKAMGG-SVPFEEALAARLSLFK-- 68 (224)
T ss_pred HccCCEEEEeCCCcccchH-----HHHHHHHHcCChH------------HHHHHHHHHHCC-CCCHHHHHHHHHHHcC--
Confidence 5679999999999999974 3467777777631 112222232332 2233332322 11110
Q ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc--
Q 020871 143 IFDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME-- 220 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~-- 220 (320)
.. .+. ..+.+. .....++||+.++|+.|+++|++++|+|++....++..++.+ |+.
T Consensus 69 ---------~~----~~~----~~~~~~----~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~-gi~~~ 126 (224)
T PLN02954 69 ---------PS----LSQ----VEEFLE----KRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL-GIPPE 126 (224)
T ss_pred ---------CC----HHH----HHHHHH----HccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh-CCChh
Confidence 00 011 111122 123468999999999999999999999999999999999986 886
Q ss_pred cccCcceE--------EeCCC----CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 221 RFEGLDCF--------LAGDD----VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 221 ~~~~fd~v--------~~~~~----~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
.+ |+.. +.+.+ ....+|+|+.+..+++++|. ++|+||||+.+|+.+++.+|+.++...++
T Consensus 127 ~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~ 198 (224)
T PLN02954 127 NI--FANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGG 198 (224)
T ss_pred hE--EEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCC
Confidence 34 4321 12211 12356788999999998885 68999999999999999988887655443
No 48
>PRK06769 hypothetical protein; Validated
Probab=99.88 E-value=1.5e-21 Score=156.14 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=86.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchh--------hHHHHHHHhhCCccccCcceEE-eCCCCCCCCCCHHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKS--------SVILCLENLIGMERFEGLDCFL-AGDDVKQKKPDPSIYVTAA 248 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~--------~~~~~l~~~~~l~~~~~fd~v~-~~~~~~~~KP~~~~~~~~~ 248 (320)
..++||+.++|+.|+++|++++|+||+... .....++.. |+..+ |.... ++++.+..||+|++|..++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~~~~~KP~p~~~~~~~ 103 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGF-GFDDI--YLCPHKHGDGCECRKPSTGMLLQAA 103 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhC-CcCEE--EECcCCCCCCCCCCCCCHHHHHHHH
Confidence 368999999999999999999999998641 122234443 55544 33222 3566678999999999999
Q ss_pred HHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 249 KRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 249 ~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++++++|++|+||||+..|+.+|+++|+.+|++.++...
T Consensus 104 ~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~ 142 (173)
T PRK06769 104 EKHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGY 142 (173)
T ss_pred HHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCc
Confidence 999999999999999999999999999999999887643
No 49
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.88 E-value=1.9e-21 Score=157.21 Aligned_cols=105 Identities=30% Similarity=0.386 Sum_probs=86.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCch---------------hhHHHHHHHhhCCccccCcceEEeC-----CCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFLAG-----DDVKQK 237 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~---------------~~~~~~l~~~~~l~~~~~fd~v~~~-----~~~~~~ 237 (320)
+.++||+.++|+.|+++|++++|+||+.. ......++++ |+ . |+.++.+ ++++..
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~--~--f~~i~~~~~~~~~~~~~~ 102 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADR-GG--R--LDGIYYCPHHPEDGCDCR 102 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CC--c--cceEEECCCCCCCCCcCC
Confidence 46999999999999999999999999863 2223344444 54 2 5666643 346789
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
||+|++|..+++++|++|++|+||||+.+|+.+|+++|+.++++.++...
T Consensus 103 KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~ 152 (181)
T PRK08942 103 KPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGV 152 (181)
T ss_pred CCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999877543
No 50
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.88 E-value=4e-22 Score=155.37 Aligned_cols=106 Identities=33% Similarity=0.461 Sum_probs=85.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCch---------------hhHHHHHHHhhCCccccCcceEE-eCCCCCCCCCCH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFL-AGDDVKQKKPDP 241 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~---------------~~~~~~l~~~~~l~~~~~fd~v~-~~~~~~~~KP~~ 241 (320)
++++||+.++|+.|+++|++++++||+.. ..+...++.+ ++.....|.... ++++.+..||+|
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~~~~~~~~~KP~~ 104 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL-GVAVDGVLFCPHHPADNCSCRKPKP 104 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC-CCceeEEEECCCCCCCCCCCCCCCH
Confidence 36899999999999999999999999873 3455566665 765210011111 145566789999
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
++|..+++++|+++++|+||||+..|+++|+++|+.+||++++
T Consensus 105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 9999999999999999999999999999999999999999764
No 51
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.88 E-value=2.3e-21 Score=159.69 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=88.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCC----------HHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPD----------PSIYVTA 247 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~----------~~~~~~~ 247 (320)
..++||+.++|+.|+++|++++|+||+....+...++.+ |+..+ |+..+..++.+..+|+ ++.+..+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~-g~~~~--~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~ 155 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL-NPDYV--YSNELVFDEKGFIQPDGIVRVTFDNKGEAVERL 155 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh-CCCeE--EEEEEEEcCCCeEecceeeEEccccHHHHHHHH
Confidence 579999999999999999999999999999999999887 88877 7766666554443433 3678888
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
++++|+++++|+||||+.+|+++++.+|+.++....+
T Consensus 156 ~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 156 KRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 9999999999999999999999999999997665444
No 52
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.87 E-value=2.2e-21 Score=155.98 Aligned_cols=119 Identities=21% Similarity=0.243 Sum_probs=91.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCch---------------hhHHHHHHHhhCCccccCcceEEeC-----------
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATK---------------SSVILCLENLIGMERFEGLDCFLAG----------- 231 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~---------------~~~~~~l~~~~~l~~~~~fd~v~~~----------- 231 (320)
+.++||+.++|+.|+++|++++++||... ......+++. ++. |+.++.+
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~----~~~i~~~~~~~~~~~~~~ 99 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAER-DVD----LDGIYYCPHHPEGVEEFR 99 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHc-CCC----ccEEEECCCCCccccccc
Confidence 47899999999999999999999999984 2222344443 443 4555432
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeE-EEEeCCCCchhhc-cccceecccc
Q 020871 232 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC-VITYTSSTAEQDF-KDAIAIYPDL 301 (320)
Q Consensus 232 ~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~-v~v~~~~~~~~~l-~~~~~~~~~~ 301 (320)
++...+||+|++|..+++++|++|++|+||||+.+|+++|+++|+.+ +++.++....... ..+++++.++
T Consensus 100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~ 171 (176)
T TIGR00213 100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSL 171 (176)
T ss_pred CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccH
Confidence 24557899999999999999999999999999999999999999998 7988876533222 1345555443
No 53
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.87 E-value=1.2e-20 Score=155.36 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=90.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
..++||+.++|+.|+++|++++|+||+........+++. .++..+ |+.++.. . ...||+|+.|..+++++|++|
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~--f~~~fd~-~-~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPY--FSGYFDT-T-VGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhh--cceEEEe-C-cccCCCHHHHHHHHHHhCcCh
Confidence 469999999999999999999999999988777777663 255666 6666542 2 337999999999999999999
Q ss_pred CCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 256 KDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++|+||||+..|+++|+++|+.++++.+++..
T Consensus 170 ~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~ 201 (220)
T TIGR01691 170 REILFLSDIINELDAARKAGLHTGQLVRPGND 201 (220)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEEEEEECCCCC
Confidence 99999999999999999999999999887643
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.85 E-value=9.2e-20 Score=158.63 Aligned_cols=129 Identities=18% Similarity=0.195 Sum_probs=97.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC-----cceEEeCC---CCCCCCCCHHHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG-----LDCFLAGD---DVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~-----fd~v~~~~---~~~~~KP~~~~~~~~~~ 249 (320)
++++||+.++|+.|++.|++++|+|++.....+..++++ |+..... .+..+.+. ++..+||+++.+..+++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~L-gld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~ 258 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKL-RLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQ 258 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHc-CCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHH
Confidence 579999999999999999999999999988888777776 8765411 11222221 33356899999999999
Q ss_pred HcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
++|+++++|++|||+.||+.|++.||+.+++ + ..+.....++.++. ...+..+.-++.
T Consensus 259 ~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-n---Akp~Vk~~Ad~~i~---~~~l~~~l~~~~ 316 (322)
T PRK11133 259 EYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-H---AKPKVNEQAQVTIR---HADLMGVLCILS 316 (322)
T ss_pred HcCCChhhEEEEECCHHHHHHHHHCCCeEEe-C---CCHHHHhhCCEEec---CcCHHHHHHHhc
Confidence 9999999999999999999999999999876 2 22333346666653 223445555443
No 55
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.84 E-value=3.1e-21 Score=152.46 Aligned_cols=107 Identities=14% Similarity=0.057 Sum_probs=96.1
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCC-chhhHHHHHHHhhCCc---------cccCcceEEeCCCCCCCCCCHHHHHH
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAA-TKSSVILCLENLIGME---------RFEGLDCFLAGDDVKQKKPDPSIYVT 246 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~-~~~~~~~~l~~~~~l~---------~~~~fd~v~~~~~~~~~KP~~~~~~~ 246 (320)
...++||+.++|+.|+++|++++++||+ ....++..++.+ ++. .+ |+.++++++....||.+.++..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~-~l~~~~~~~~~~~~--Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTF-EITYAGKTVPMHSL--FDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhC-CcCCCCCcccHHHh--ceeeeeccCCchHHHHHHHHHH
Confidence 3579999999999999999999999998 777778888886 888 88 9999999887778888888888
Q ss_pred HHHHc--CCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 247 AAKRL--GISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 247 ~~~~l--~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
+.+.+ |++|++|+||||+..|+++|+++|+.++++.++..
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence 88777 89999999999999999999999999999987654
No 56
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.84 E-value=2e-20 Score=143.40 Aligned_cols=97 Identities=33% Similarity=0.484 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc--------hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT--------KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~--------~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (320)
.++||+.++|+.|++.|++++++||+. .......++.+ ++.. +..+.+. +..||+|++|..++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~l~~----~~~~~~~--~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-GVPI----DVLYACP--HCRKPKPGMFLEALKR 97 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-CCCE----EEEEECC--CCCCCChHHHHHHHHH
Confidence 689999999999999999999999998 67777788886 7753 3333333 5779999999999999
Q ss_pred c-CCCCCCEEEEec-CHhhHHHHHHcCCeEEEEe
Q 020871 251 L-GISEKDCLVVED-SVIGLQAATRAGMACVITY 282 (320)
Q Consensus 251 l-~~~~~~~v~VGD-~~~Dv~~a~~aG~~~v~v~ 282 (320)
+ +++|++|+|||| +..|+++|+++|+.+|+++
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 9 599999999999 6899999999999999986
No 57
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.83 E-value=3.8e-20 Score=145.44 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCc---------------hhhHHHHHHHhhCCccccCcceE-Ee----CCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCF-LA----GDDVKQK 237 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~---------------~~~~~~~l~~~~~l~~~~~fd~v-~~----~~~~~~~ 237 (320)
+.++||+.++|+.|+++|++++++||.. ...+...++.+ |+. |+.+ ++ +++....
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~-gl~----fd~ii~~~~~~~~~~~~~ 102 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ-GII----FDDVLICPHFPDDNCDCR 102 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC-CCc----eeEEEECCCCCCCCCCCC
Confidence 4799999999999999999999999973 34566667776 775 4655 44 5788889
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
||++++|..+++++++++++|+||||+.+|+++|+++|+.++++..+..
T Consensus 103 KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~ 151 (161)
T TIGR01261 103 KPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEEL 151 (161)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhc
Confidence 9999999999999999999999999999999999999999999987654
No 58
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.83 E-value=2.3e-19 Score=148.94 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=85.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCC----chhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAA----TKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI 253 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~----~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~ 253 (320)
..+++++.++|+.|+++|++++++||. .......+++.+ |+..+ |+.++++++...+||++. .+++++++
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-Gi~~~--f~~i~~~d~~~~~Kp~~~---~~l~~~~i 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-HIPAM--NPVIFAGDKPGQYQYTKT---QWIQDKNI 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-CCchh--eeEEECCCCCCCCCCCHH---HHHHhCCC
Confidence 457788999999999999999999998 455677777776 99988 899999888887888875 35567776
Q ss_pred CCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 254 SEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 254 ~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++||||+.+|+.+|+++|+.++.+.++.+.
T Consensus 187 ----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 187 ----RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred ----eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 799999999999999999999999877665
No 59
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.82 E-value=3.1e-19 Score=148.72 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=95.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHH----------HHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSI----------YVTA 247 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~----------~~~~ 247 (320)
..++||+.++|+.|+++|++++|+||+....+..+++++..-..+...+..+.++.+...||+|.. ...+
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 589999999999999999999999999999999888875111223111445566666777887754 3578
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
+++++..+++|+||||+.+|+.+|+.||+.++ .+ ...+... ..-.+.+.--++.|+.+.++++.+
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~--~l~~~~~--~~~~~~~~~~~f~ei~~~l~~~~~ 217 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--RD--FLITKCE--ELGIPYTPFETFHDVQTELKHLLE 217 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCccee--HH--HHHHHHH--HcCCCccccCCHHHHHHHHHHHhc
Confidence 89999999999999999999999999999543 21 1111100 111233333456677777776654
No 60
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.80 E-value=4.7e-19 Score=140.21 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=82.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchh------------hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS------------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~------------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~ 247 (320)
++||+.++|+.|++.|++++|+||+... .+...++++ |+. ++.++++++....||+|+++..+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~-gl~----~~~ii~~~~~~~~KP~p~~~~~~ 117 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKL-KVP----IQVLAATHAGLYRKPMTGMWEYL 117 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHc-CCC----EEEEEecCCCCCCCCccHHHHHH
Confidence 7899999999999999999999998753 356677776 774 35666676666789999999999
Q ss_pred HHHcC--CCCCCEEEEecCH--------hhHHHHHHcCCeEEE
Q 020871 248 AKRLG--ISEKDCLVVEDSV--------IGLQAATRAGMACVI 280 (320)
Q Consensus 248 ~~~l~--~~~~~~v~VGD~~--------~Dv~~a~~aG~~~v~ 280 (320)
++++| +++++|+||||+. +|+++|+++|+.+++
T Consensus 118 ~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 118 QSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 99999 9999999999996 699999999999864
No 61
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.79 E-value=2.8e-18 Score=141.67 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=90.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC----CCCCCCCHHHHHHHHHHcCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----VKQKKPDPSIYVTAAKRLGI 253 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----~~~~KP~~~~~~~~~~~l~~ 253 (320)
..++||+.++|+.|+++ ++++++||+.....+..++++ |+..+ |+..+..++ ++..++.|.....+++.++.
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~-gl~~~--f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~ 142 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL-GWPTL--FCHSLEVDEDGMITGYDLRQPDGKRQAVKALKS 142 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc-CCchh--hcceEEECCCCeEECccccccchHHHHHHHHHH
Confidence 57899999999999999 999999999999999999997 98877 554433221 12223334455666777777
Q ss_pred CCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhc-cccceecccccccChhHHHHHHHHhhh
Q 020871 254 SEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF-KDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 254 ~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
.+++|+||||+.+|+.+++++|+.+. ++... ... ..+.. ....++.+|.+++.+..+
T Consensus 143 ~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~~~---~~~~~~~~~----~~~~~~~el~~~l~~~~~ 200 (205)
T PRK13582 143 LGYRVIAAGDSYNDTTMLGEADAGIL-FRPPA---NVIAEFPQF----PAVHTYDELLAAIDKASA 200 (205)
T ss_pred hCCeEEEEeCCHHHHHHHHhCCCCEE-ECCCH---HHHHhCCcc----cccCCHHHHHHHHHHHHh
Confidence 78999999999999999999998653 33221 111 11221 123356677777776543
No 62
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.79 E-value=7.8e-19 Score=151.50 Aligned_cols=109 Identities=13% Similarity=0.203 Sum_probs=87.0
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHH-HHHHhhCCccccCcceEEe---CCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL-CLENLIGMERFEGLDCFLA---GDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~-~l~~~~~l~~~~~fd~v~~---~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
-|+++.++++.|++.|. ++++||.+...... .+.. +++..+ |+.+.. .+....+||+|++|..+++++|++|
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~-~~~g~~--~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~ 219 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRT-PGTGSL--VAAIETASGRQPLVVGKPSPYMFECITENFSIDP 219 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcc-cChHHH--HHHHHHHhCCceeccCCCCHHHHHHHHHHhCCCh
Confidence 47899999999999887 78999988643321 1222 355555 554432 3445678999999999999999999
Q ss_pred CCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhcc
Q 020871 256 KDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFK 292 (320)
Q Consensus 256 ~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~ 292 (320)
++|+||||+. .|+.+|+++|+.+++|.+|....+.+.
T Consensus 220 ~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~ 257 (279)
T TIGR01452 220 ARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQ 257 (279)
T ss_pred hhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHH
Confidence 9999999996 899999999999999999988766654
No 63
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=131.91 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=93.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCC------CCCCCCHHHHHHHHHHc
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV------KQKKPDPSIYVTAAKRL 251 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~------~~~KP~~~~~~~~~~~l 251 (320)
+++.+-.+++|-.|+.++ .+++||++..++.+.++.+ |+.+. |+.+++.+-. -..||.++.|+.+.+..
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~L-GieDc--Fegii~~e~~np~~~~~vcKP~~~afE~a~k~a 173 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKL-GIEDC--FEGIICFETLNPIEKTVVCKPSEEAFEKAMKVA 173 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHh-ChHHh--ccceeEeeccCCCCCceeecCCHHHHHHHHHHh
Confidence 689999999999999975 8899999999999999998 99988 9999886433 35799999999999999
Q ss_pred CCC-CCCEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 252 GIS-EKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 252 ~~~-~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
|+. |.+++||+||.+++..|++.||.++++....
T Consensus 174 gi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 174 GIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred CCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 997 9999999999999999999999999886654
No 64
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.77 E-value=8.1e-18 Score=134.14 Aligned_cols=101 Identities=22% Similarity=0.344 Sum_probs=84.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc-hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT-KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
.++||+.++|+.|++.|++++++||+. .......++.+ ++..+ .+..||+|++|..+++++++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~-gl~~~-----------~~~~KP~p~~~~~~l~~~~~~~~~ 110 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKAL-GIPVL-----------PHAVKPPGCAFRRAHPEMGLTSEQ 110 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHc-CCEEE-----------cCCCCCChHHHHHHHHHcCCCHHH
Confidence 588999999999999999999999998 45455454543 55422 134699999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhc
Q 020871 258 CLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF 291 (320)
Q Consensus 258 ~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l 291 (320)
|+||||+. .|+++|+++|+.+|+++++....+.+
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 99999998 69999999999999999887665433
No 65
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.75 E-value=6.7e-18 Score=143.61 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCC---CCCCCHHHHHHHHHHcCCCCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK---QKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~---~~KP~~~~~~~~~~~l~~~~~ 256 (320)
.|+++.+.++.|+..+++++++||.+........... |+..+ |+.+.++.... .+||+|++|..++++++++|+
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~-g~g~~--~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~ 197 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLAL-DVGPF--VTALEYATDTKATVVGKPSKTFFLEALRATGCEPE 197 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCC-CchHH--HHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChh
Confidence 4789999999999999999999998877665455443 77777 77665543332 379999999999999999999
Q ss_pred CEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 257 DCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 257 ~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
+|+||||+. +|+.+|+++|+.+++|.+|....++.+. ....|++..-++.+|.+++
T Consensus 198 ~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~-~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 198 EAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEK-INVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred hEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcc-cCCCCCEEECCHHHHHHHH
Confidence 999999996 8999999999999999888643322211 1123444444555665544
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.75 E-value=9e-17 Score=131.38 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=75.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc--eEE------eCCCCCCCCCCHHHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD--CFL------AGDDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd--~v~------~~~~~~~~KP~~~~~~~~~~ 249 (320)
++++||+.++|+.|++.+ +++|+|++....+..+++.+ |++.+ |. ..+ .+... ..+|.+..+...++
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l-gi~~~--~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~ 141 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL-GFPTL--LCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFK 141 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc-CCchh--hceeeEEecCCeeECeee-cCcchHHHHHHHHH
Confidence 479999999999999985 99999999999999999987 99877 44 222 22222 34555555555556
Q ss_pred HcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeC
Q 020871 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
+.+. +|++|||+.||+.+++.||.++++...
T Consensus 142 ~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak 172 (203)
T TIGR02137 142 SLYY---RVIAAGDSYNDTTMLSEAHAGILFHAP 172 (203)
T ss_pred hhCC---CEEEEeCCHHHHHHHHhCCCCEEecCC
Confidence 6653 799999999999999999999876533
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.75 E-value=1.2e-17 Score=128.51 Aligned_cols=101 Identities=30% Similarity=0.484 Sum_probs=91.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCC----------------CCCH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK----------------KPDP 241 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~----------------KP~~ 241 (320)
..+++++.++|+.|+++|++++++||+....+...++.. ++..+ ++.+++++..... ||++
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL-GLDDY--FDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNP 99 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc-CCchh--hhheeccchhhhhcccccccccccccccCCCCH
Confidence 579999999999999999999999999999999999886 88766 7888877665544 9999
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
..+..++++++..++++++|||+.+|+++++++|+.++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 100 DKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 9999999999999999999999999999999999998864
No 68
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.74 E-value=1.3e-16 Score=129.92 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=79.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC--------------------CCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD--------------------VKQK 237 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~--------------------~~~~ 237 (320)
.+++||+.++|+.|++.|++++++||+....++..++++ ++..+ |+.+++++. ...+
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~-~l~~~--f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 147 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI-GEKDV--FIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCG 147 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc-CChhh--eeEEeccCceECCCCcEEEecCCCCccCcCCCC
Confidence 489999999999999999999999999999899888886 89888 888886533 1233
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeE
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~ 278 (320)
.++++.+..+.++. +++|+||||+.+|+.+|+.+++.+
T Consensus 148 ~~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 148 CCKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CCHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 34577888877664 789999999999999999997643
No 69
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.73 E-value=7.7e-17 Score=133.78 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=80.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc-cCcceEEeCCCCCCCCCCHHHH----------HH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF-EGLDCFLAGDDVKQKKPDPSIY----------VT 246 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~-~~fd~v~~~~~~~~~KP~~~~~----------~~ 246 (320)
..++||+.++|+.|+++|++++|+|++....++.+++.+ +.... ...+.++.++.+...||+|..+ ..
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~ 147 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI-VEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS 147 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh-CCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence 589999999999999999999999999999888888876 43222 1114455556666677877665 47
Q ss_pred HHHHcCCCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 247 AAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 247 ~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
++++++..+++|+||||+.+|+.+|+.||+.
T Consensus 148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~~ 178 (214)
T TIGR03333 148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDLC 178 (214)
T ss_pred HHHHHhhcCCcEEEEeCCHHHHHHHHhCCee
Confidence 7788888889999999999999999999983
No 70
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.72 E-value=7.9e-17 Score=140.99 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=86.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCc---------------hhhHHHHHHHhhCCccccCcceEE-e----CCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCFL-A----GDDVKQK 237 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~---------------~~~~~~~l~~~~~l~~~~~fd~v~-~----~~~~~~~ 237 (320)
..++||+.++|..|+++|++++|+||.+ .......++.. ++. |+.++ + +++...+
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~-gl~----fd~i~i~~~~~sd~~~~r 103 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQ-GIK----FDEVLICPHFPEDNCSCR 103 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHc-CCc----eeeEEEeCCcCcccCCCC
Confidence 4799999999999999999999999952 33344455564 663 56554 3 3566788
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
||+|.++..++++++++|++++||||+.+|+++|+++|+.+|+++...
T Consensus 104 KP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~~ 151 (354)
T PRK05446 104 KPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARET 151 (354)
T ss_pred CCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECCC
Confidence 999999999999999999999999999999999999999999996643
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.71 E-value=7.7e-17 Score=126.34 Aligned_cols=116 Identities=12% Similarity=0.123 Sum_probs=89.9
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHh
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~ 266 (320)
+|+.|+++|++++|+||.........++.+ |+..+ |+. .||+++.+..+++++|+++++|+||||+.+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~-gi~~~--~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~ 103 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL-GITHL--YQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLI 103 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc-CCCEE--Eec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence 789999999999999999999899889887 88876 542 378899999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhhc
Q 020871 267 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVAA 319 (320)
Q Consensus 267 Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 319 (320)
|+.+++.+|+. +.+.+... .....++++.+.-... .-|.+++++++.+
T Consensus 104 D~~~~~~ag~~-~~v~~~~~--~~~~~a~~i~~~~~~~--g~~~~~~~~~~~~ 151 (154)
T TIGR01670 104 DWPVMEKVGLS-VAVADAHP--LLIPRADYVTRIAGGR--GAVREVCELLLLA 151 (154)
T ss_pred HHHHHHHCCCe-EecCCcCH--HHHHhCCEEecCCCCC--cHHHHHHHHHHHh
Confidence 99999999998 55544432 2223455555433221 1266777776654
No 72
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.71 E-value=4.2e-17 Score=123.67 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=76.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCC-chhhHHHHHHHhhC-------CccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAA-TKSSVILCLENLIG-------MERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~-~~~~~~~~l~~~~~-------l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (320)
.++||+.++|+.|+++|++++++||+ ........++.. + +..+ |+.++++++ +|+|+.|..++++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~~~~i~~l~~~--f~~~~~~~~----~pkp~~~~~a~~~ 101 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-EDFGIIFPLAEY--FDPLTIGYW----LPKSPRLVEIALK 101 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cccccchhhHhh--hhhhhhcCC----CcHHHHHHHHHHH
Confidence 48899999999999999999999999 777777777775 6 7777 888887754 5888999999999
Q ss_pred cC--CCCCCEEEEecCHhhHHHHHH
Q 020871 251 LG--ISEKDCLVVEDSVIGLQAATR 273 (320)
Q Consensus 251 l~--~~~~~~v~VGD~~~Dv~~a~~ 273 (320)
+| +.|++|+||||+..|++..++
T Consensus 102 lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 102 LNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred hcCCCCcceEEEECCCHhHHHHHHh
Confidence 99 999999999999999887654
No 73
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.70 E-value=9e-16 Score=126.04 Aligned_cols=100 Identities=27% Similarity=0.295 Sum_probs=84.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC-------C---CCCCCCHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-------V---KQKKPDPSIYVTA 247 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-------~---~~~KP~~~~~~~~ 247 (320)
..++||+.++++.|++.|++++|+|++....+..+.+.+ |++.. +...+..++ . -.++-+......+
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l-g~d~~--~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL-GIDYV--VANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh-CCchh--eeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 589999999999999999999999999999999999887 99877 555444443 1 1223456778899
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
++.+|++++++++|||+.||+.|...+|.+.+.
T Consensus 153 ~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 153 AAELGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred HHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 999999999999999999999999999999654
No 74
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.70 E-value=3.4e-16 Score=129.89 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=79.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCc----hhhHHHHHHHhhCC--ccccCcceEEeCCCCCCCCCCHHHHHHHHHHc
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT----KSSVILCLENLIGM--ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~----~~~~~~~l~~~~~l--~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (320)
..++||+.++|+.|+++|++++++||.. ......+++.+ |+ ..+ |+.++++++. .||++.. .++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~-gip~~~~--f~vil~gd~~--~K~~K~~---~l~~~ 184 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDF-HIPADNM--NPVIFAGDKP--GQYTKTQ---WLKKK 184 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHc-CCCcccc--eeEEEcCCCC--CCCCHHH---HHHhc
Confidence 5799999999999999999999999964 33455555555 88 777 8888887753 6777653 55667
Q ss_pred CCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 252 GISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 252 ~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++ ++||||+.+|+.+|++||+.++.+.++...
T Consensus 185 ~i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~ 216 (237)
T PRK11009 185 NI----RIFYGDSDNDITAAREAGARGIRILRAANS 216 (237)
T ss_pred CC----eEEEcCCHHHHHHHHHcCCcEEEEecCCCC
Confidence 76 899999999999999999999999887664
No 75
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.70 E-value=1e-16 Score=140.15 Aligned_cols=105 Identities=21% Similarity=0.201 Sum_probs=95.1
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc-ccCcceEEeCC-------CCCCCCCCHHHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGD-------DVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~-------~~~~~KP~~~~~~~~~~ 249 (320)
..++||+.++|+.|++.|++++++||.........++.+ ++.. + |+.+++.+ +....||+|+.+..+++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l-~~~~~~--f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~ 262 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWL-RQTDIW--FDDLIGRPPDMHFQREQGDKRPDDVVKEEIFW 262 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHH-HHcCCc--hhhhhCCcchhhhcccCCCCCCcHHHHHHHHH
Confidence 478999999999999999999999999999998899887 7775 7 88888887 45578999999999999
Q ss_pred HcCC-CCCCEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 250 RLGI-SEKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 250 ~l~~-~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
+++. .+++|+||||+.+|+++|+++|+.+++|.+|.
T Consensus 263 ~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 263 EKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred HHhccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 9988 67999999999999999999999999997763
No 76
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.68 E-value=1.2e-15 Score=123.03 Aligned_cols=94 Identities=24% Similarity=0.220 Sum_probs=76.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC------------CCCCCCCHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD------------VKQKKPDPSIYV 245 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~------------~~~~KP~~~~~~ 245 (320)
+.++||+.++++.++++|++++|+|++....++..++.+ |+..+ |...+..++ ...+..++..+.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~-g~~~~--~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL-GIDDV--FANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCchh--eeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 568999999999999999999999999999999999887 88876 443333221 122344567888
Q ss_pred HHHHHcCCCCCCEEEEecCHhhHHHHHHc
Q 020871 246 TAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 246 ~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
.+++++++++++|++|||+.+|+.+++.|
T Consensus 149 ~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 88889999999999999999999998764
No 77
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.68 E-value=1.8e-16 Score=134.26 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHH--HHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL--CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~--~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
..|+.....+..|+ .|.+ .++||.+...... ..-....+... ++...+.+.+..+||+|++|..++++++++++
T Consensus 121 ~~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~--i~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~ 196 (249)
T TIGR01457 121 IDYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITV--LEVATGVKPVYIGKPNAIIMEKAVEHLGTERE 196 (249)
T ss_pred CCHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHH--HHHHhCCCccccCCChHHHHHHHHHHcCCCcc
Confidence 35566666777774 4666 7888887654321 00000011122 34444556677789999999999999999999
Q ss_pred CEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhc
Q 020871 257 DCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDF 291 (320)
Q Consensus 257 ~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l 291 (320)
+|+||||+. +|+.+|+++|+.+++|.+|....+.+
T Consensus 197 ~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~ 232 (249)
T TIGR01457 197 ETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEV 232 (249)
T ss_pred cEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHH
Confidence 999999997 79999999999999999988765554
No 78
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.67 E-value=4.3e-16 Score=118.00 Aligned_cols=94 Identities=27% Similarity=0.393 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
..-|++.+.+.+++++|+++.|+||++..-+....+.+ |+.. +. ...||-+..|..+++++++++++|
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l-~v~f------i~-----~A~KP~~~~fr~Al~~m~l~~~~v 113 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL-GVPF------IY-----RAKKPFGRAFRRALKEMNLPPEEV 113 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc-CCce------ee-----cccCccHHHHHHHHHHcCCChhHE
Confidence 46678888888999999999999999998888888776 6643 32 458999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEeCC
Q 020871 259 LVVEDSV-IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 259 v~VGD~~-~Dv~~a~~aG~~~v~v~~~ 284 (320)
+||||.. .|+.+++.+|+.+|+|..=
T Consensus 114 vmVGDqL~TDVlggnr~G~~tIlV~Pl 140 (175)
T COG2179 114 VMVGDQLFTDVLGGNRAGMRTILVEPL 140 (175)
T ss_pred EEEcchhhhhhhcccccCcEEEEEEEe
Confidence 9999999 7999999999999998553
No 79
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.67 E-value=2e-15 Score=124.27 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcce-EE-------eCC---CCCCCCCCHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDC-FL-------AGD---DVKQKKPDPSIYVTA 247 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~-v~-------~~~---~~~~~KP~~~~~~~~ 247 (320)
.++||+.++++.+++.|++++|+|++....++..++.+ |++.+ |.. +. .+. ....++++...+..+
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l-g~~~~--~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~ 163 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL-GIDNA--IGTRLEESEDGIYTGNIDGNNCKGEGKVHALAEL 163 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc-CCcce--EecceEEcCCCEEeCCccCCCCCChHHHHHHHHH
Confidence 68999999999999999999999999999999888886 88877 433 11 221 112345667778999
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEE
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
+++.++++++|++|||+.+|+.+++.+|..++..
T Consensus 164 ~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 164 LAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 9999999999999999999999999999987543
No 80
>PLN02645 phosphoglycolate phosphatase
Probab=99.67 E-value=3.5e-16 Score=136.85 Aligned_cols=126 Identities=13% Similarity=0.167 Sum_probs=89.6
Q ss_pred HHHHHHHHCCCcEEEEeCCchhh-HHHHHHHhhCCccccCcceEEeCCCCC---CCCCCHHHHHHHHHHcCCCCCCEEEE
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSS-VILCLENLIGMERFEGLDCFLAGDDVK---QKKPDPSIYVTAAKRLGISEKDCLVV 261 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~-~~~~l~~~~~l~~~~~fd~v~~~~~~~---~~KP~~~~~~~~~~~l~~~~~~~v~V 261 (320)
.....|+.++-.++++||.+... ....+.. +|+..+ |+.+..+.... .+||+|.+|..+++++++++++|+||
T Consensus 177 ~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~-~g~g~~--~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~V 253 (311)
T PLN02645 177 YATLCIRENPGCLFIATNRDAVTHLTDAQEW-AGAGSM--VGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMV 253 (311)
T ss_pred HHHHHHhcCCCCEEEEeCCCCCCCCCCCCCc-cchHHH--HHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEE
Confidence 34445554333588899988743 2222223 377777 77666654432 36999999999999999999999999
Q ss_pred ecCH-hhHHHHHHcCCeEEEEeCCCCchhhcccc-ceecccccccChhHHHHHHH
Q 020871 262 EDSV-IGLQAATRAGMACVITYTSSTAEQDFKDA-IAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 262 GD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~-~~~~~~~~~~~~~~l~~~l~ 314 (320)
||+. +|+.+|+++|+.+++|.+|....+++... ....|++..-++.+|.++++
T Consensus 254 GD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 254 GDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred cCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 9998 89999999999999999888776655321 22346666666777766554
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.66 E-value=1.2e-15 Score=126.77 Aligned_cols=90 Identities=29% Similarity=0.397 Sum_probs=78.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
..++||+.++|+.|++.|++++++|+.+........+.+ |+... .+++. .. +||++.+|..+++.+++++++
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~l-gi~~~----~v~a~-~~--~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQL-GIFDS----IVFAR-VI--GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHT-TSCSE----EEEES-HE--TTTHHHHHHHHHHHHTCTGGG
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccc-ccccc----ccccc-cc--ccccchhHHHHHHHHhcCCCE
Confidence 367899999999999999999999999999888888887 88541 12222 11 799999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcC
Q 020871 258 CLVVEDSVIGLQAATRAG 275 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG 275 (320)
|+||||+.||+.|+++||
T Consensus 198 v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 198 VAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEEESSGGHHHHHHHSS
T ss_pred EEEEccCHHHHHHHHhCc
Confidence 999999999999999997
No 82
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.65 E-value=1.8e-15 Score=130.51 Aligned_cols=235 Identities=11% Similarity=0.121 Sum_probs=128.2
Q ss_pred CCccEEEEecCCccccchHHHHHHHHHHHH---hcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcC----
Q 020871 65 QSLQALIFDCDGVIIESEHLHRQAYNDAFS---HFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHG---- 137 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---- 137 (320)
|++|+|+||+||||++..+.+.+...+++. +.|+.....++|++.....+.+.+ +... .+...+|
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l----~~~~----~~I~~NGa~i~ 72 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL----ALDT----PAICCNGTYLY 72 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc----CCCC----CEEEcCCcEEE
Confidence 358999999999999887655555555554 458888887777765443333322 1110 0011111
Q ss_pred -CCCccccCCCCCCchhHHHHHHHHHHHHH----------------HHHHHH------HHhCCCCCChhHHHHHHHHHHC
Q 020871 138 -WPSSTIFDNPPVTDDDQAKLIDLIQDWKT----------------ERYQQI------IKSGTVEPRPGVLRLMDEAKAA 194 (320)
Q Consensus 138 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~------~~~~~~~~~~g~~~~l~~L~~~ 194 (320)
....+++...+++.+...++.+.+.+... ..+... ........++++.+++..++..
T Consensus 73 d~~~~~~l~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (272)
T PRK10530 73 DYQAKKVLEADPLPVQQALQVIEMLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQV 152 (272)
T ss_pred ecCCCEEEEecCCCHHHHHHHHHHHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhc
Confidence 01112333344444444444444322100 000000 0000112356777777777777
Q ss_pred CCcEEEEeCCch-hhHHHHHHHh---hCCcccc-CcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHH
Q 020871 195 GKKVAVCSAATK-SSVILCLENL---IGMERFE-GLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQ 269 (320)
Q Consensus 195 g~~i~i~Tn~~~-~~~~~~l~~~---~~l~~~~-~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~ 269 (320)
+..+.++++... .......+.+ .++.... .++. + +-+..+..++..+..+++++|+++++|++|||+.||++
T Consensus 153 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~--ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~ 229 (272)
T PRK10530 153 NAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQ-V--DIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDIS 229 (272)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCce-E--EEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHH
Confidence 766666666442 1122222221 2332110 0111 1 12233445677999999999999999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHh
Q 020871 270 AATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNV 316 (320)
Q Consensus 270 ~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 316 (320)
|++.+|+.+++- ++..+....+++++++..+ +.+...|+++
T Consensus 230 m~~~ag~~vamg---na~~~lk~~Ad~v~~~n~~---dGv~~~l~~~ 270 (272)
T PRK10530 230 MLEAAGLGVAMG---NADDAVKARADLVIGDNTT---PSIAEFIYSH 270 (272)
T ss_pred HHHhcCceEEec---CchHHHHHhCCEEEecCCC---CcHHHHHHHH
Confidence 999999876553 3333333567777766444 4455555554
No 83
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.64 E-value=6e-15 Score=123.91 Aligned_cols=80 Identities=26% Similarity=0.461 Sum_probs=67.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
-.+||.+.+|+.+++.++.++++|+||||+. +||.+|+++||.+++|.+|....+++... ...|++..-++.++...+
T Consensus 187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~-~~~p~~v~~sl~~~~~~~ 265 (269)
T COG0647 187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRA-EVKPTYVVDSLAELITAL 265 (269)
T ss_pred ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhh-ccCCcchHhhHHHHHhhh
Confidence 3579999999999999999999999999999 69999999999999999999977765544 456777776777776665
Q ss_pred HH
Q 020871 314 QN 315 (320)
Q Consensus 314 ~~ 315 (320)
..
T Consensus 266 ~~ 267 (269)
T COG0647 266 KE 267 (269)
T ss_pred hc
Confidence 54
No 84
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.64 E-value=1.8e-15 Score=122.06 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=84.8
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHh
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~ 266 (320)
.++.|+++|++++++||.....+...++.+ |+..+ |+ + .+++++.+..+++++|+++++|+||||+.+
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l-gl~~~--f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTL-GITHL--YQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHc-CCcee--ec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence 556678899999999999999899999887 88776 54 1 356788999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEeCCCCchhhccccceecc-cccccChhHHHHHH
Q 020871 267 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYP-DLSNVRLKDLELLL 313 (320)
Q Consensus 267 Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~l 313 (320)
|+.+++++|+.++ +.+ ........++++++ ...+-.+.+|.+++
T Consensus 124 D~~~a~~aG~~~~-v~~--~~~~~~~~a~~v~~~~~g~g~~~el~~~i 168 (183)
T PRK09484 124 DWPVMEKVGLSVA-VAD--AHPLLLPRADYVTRIAGGRGAVREVCDLL 168 (183)
T ss_pred HHHHHHHCCCeEe-cCC--hhHHHHHhCCEEecCCCCCCHHHHHHHHH
Confidence 9999999999954 432 22222234566654 23333556666554
No 85
>PRK10444 UMP phosphatase; Provisional
Probab=99.63 E-value=6.3e-16 Score=130.38 Aligned_cols=61 Identities=18% Similarity=0.352 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCchhhcc
Q 020871 232 DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAEQDFK 292 (320)
Q Consensus 232 ~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~~~l~ 292 (320)
+....+||+|++|..+++++++++++|+||||+. +|+.+|+++|+.+++|.+|....+.+.
T Consensus 168 ~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~ 229 (248)
T PRK10444 168 KPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDID 229 (248)
T ss_pred CccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHh
Confidence 4455689999999999999999999999999997 799999999999999999988766664
No 86
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.60 E-value=1.3e-15 Score=128.91 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=82.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE--EeCCCCCCCCCCHHHHHHHHHHcCCC-CC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--LAGDDVKQKKPDPSIYVTAAKRLGIS-EK 256 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v--~~~~~~~~~KP~~~~~~~~~~~l~~~-~~ 256 (320)
-++++.++++.|+++|+++ ++||.+.......+... +...+ |..+ .+.+....+||+|++|..++++++.. ++
T Consensus 139 ~~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~-~~g~~--~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 139 DLDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRY-GAGYY--AELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred CHHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEe-cccHH--HHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcc
Confidence 3789999999999899997 88999887665555553 77766 5544 45555668999999999999999975 57
Q ss_pred CEEEEecC-HhhHHHHHHcCCeEEEEe
Q 020871 257 DCLVVEDS-VIGLQAATRAGMACVITY 282 (320)
Q Consensus 257 ~~v~VGD~-~~Dv~~a~~aG~~~v~v~ 282 (320)
+|+||||+ .+|+.+|+++|+.+++|.
T Consensus 215 ~~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred cEEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999999 589999999999999985
No 87
>PRK11590 hypothetical protein; Provisional
Probab=99.58 E-value=1.8e-13 Score=113.27 Aligned_cols=187 Identities=10% Similarity=-0.046 Sum_probs=107.5
Q ss_pred CccEEEEecCCccccchHHHHHHHHHHH-HhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCcccc
Q 020871 66 SLQALIFDCDGVIIESEHLHRQAYNDAF-SHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIF 144 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 144 (320)
..|+++||+||||++.+ ....+...+ .++|+.... ...+...+|.+........ ..+. ..++
T Consensus 5 ~~k~~iFD~DGTL~~~d--~~~~~~~~~~~~~g~~~~~------------~~~~~~~ig~~l~~~~~~~-~~~~--~~~~ 67 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD--MFGSFLRYLLRRQPLNLLL------------VLPLLPVIGLGLLVKGRAA-RWPM--SLLL 67 (211)
T ss_pred cceEEEEecCCCCcccc--hHHHHHHHHHHhcchhhHH------------HhHHHHHhccCcccchhhh-hhhH--HHHH
Confidence 46799999999999433 455666655 777754211 2334444554433211110 0000 0000
Q ss_pred C--CCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHH-HHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 145 D--NPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLM-DEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 145 ~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
. ....+.+. .+.+.+.+.+.|... ..++||+.++| +.|++.|++++|+||+....++..++.+ ++..
T Consensus 68 ~~~~~g~~~~~----~~~~~~~f~~~~~~~-----~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l-~~~~ 137 (211)
T PRK11590 68 WGCTFGHSEAR----LQALEADFVRWFRDN-----VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT-PWLP 137 (211)
T ss_pred HHHHcCCCHHH----HHHHHHHHHHHHHHh-----CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc-cccc
Confidence 0 00111111 233333344444433 46799999999 5788899999999999999898888886 6422
Q ss_pred ccCcceEEeCC-C---CCC--CCC-CHHH-HHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeC
Q 020871 222 FEGLDCFLAGD-D---VKQ--KKP-DPSI-YVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 222 ~~~fd~v~~~~-~---~~~--~KP-~~~~-~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
.+.+++.. + .+. +.+ ..+. ...+-+.++.+...+.+.|||.+|+.+...+|-+.+ ||.
T Consensus 138 ---~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~-vnp 203 (211)
T PRK11590 138 ---RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWR-VTP 203 (211)
T ss_pred ---cCceEEEEEEEEEccEECCccCCChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEE-ECc
Confidence 13344432 1 110 000 0111 233334457777889999999999999999999964 443
No 88
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.57 E-value=4e-14 Score=109.63 Aligned_cols=195 Identities=17% Similarity=0.172 Sum_probs=118.3
Q ss_pred CCCccEEEEecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccc
Q 020871 64 SQSLQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTI 143 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 143 (320)
+..-++|+||+|.|++. .+.+.+++...|.. ++..+.-+..+++..+ +++.+.+.
T Consensus 13 ~~~~~aVcFDvDSTvi~-----eEgIdelA~~~G~~------------~~Va~~T~rAMng~~~-F~eaL~~R------- 67 (227)
T KOG1615|consen 13 WRSADAVCFDVDSTVIQ-----EEGIDELAAYCGVG------------EAVAEVTRRAMNGEAD-FQEALAAR------- 67 (227)
T ss_pred HHhcCeEEEecCcchhH-----HhhHHHHHHHhCch------------HHHHHHHHHHhCCCCc-HHHHHHHH-------
Confidence 45688999999999994 34455555556653 2223334445544433 33333221
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc--
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-- 221 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~-- 221 (320)
.. +.+-........+....+.+-||+.++...|+++|.+++++|++.+..+..+...+ ||+.
T Consensus 68 --------------l~-llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~L-gi~~~n 131 (227)
T KOG1615|consen 68 --------------LS-LLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQL-GIPKSN 131 (227)
T ss_pred --------------HH-HhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHh-CCcHhh
Confidence 01 11111122222233456789999999999999999999999999999999988887 8875
Q ss_pred c------cCcceEEeCCC----CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhc
Q 020871 222 F------EGLDCFLAGDD----VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF 291 (320)
Q Consensus 222 ~------~~fd~v~~~~~----~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l 291 (320)
. ++.+.-+.+.+ +..+--+++.+..+++ +.+-+.++||||+.+|+++... |...+.........+..
T Consensus 132 ~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk 208 (227)
T KOG1615|consen 132 IYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVK 208 (227)
T ss_pred hhhheeeeccCCcccccccCCccccCCccHHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhH
Confidence 1 11222222322 1122344567777766 7777999999999999998877 43334433333233333
Q ss_pred cccceeccccc
Q 020871 292 KDAIAIYPDLS 302 (320)
Q Consensus 292 ~~~~~~~~~~~ 302 (320)
.++.+.+.+|.
T Consensus 209 ~nak~~~~~f~ 219 (227)
T KOG1615|consen 209 ANAKWYVTDFY 219 (227)
T ss_pred hccHHHHHHHH
Confidence 34555444443
No 89
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.54 E-value=3.2e-14 Score=125.11 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHH----hhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN----LIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~----~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
.+++|+.++|..|++.|++++|+|+++...+...+++ + ++..+ |+.+.++ .||+|+.+..+++++|+.
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~-~~~~~--f~~~~~~-----~~pk~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFI-LQAED--FDARSIN-----WGPKSESLRKIAKKLNLG 102 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCcccc-CcHHH--eeEEEEe-----cCchHHHHHHHHHHhCCC
Confidence 4689999999999999999999999999999999988 5 77777 7877555 689999999999999999
Q ss_pred CCCEEEEecCHhhHHHHHHcCCe
Q 020871 255 EKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+++++||||++.|+.++++++-.
T Consensus 103 ~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 103 TDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred cCcEEEECCCHHHHHHHHHHCCC
Confidence 99999999999999999997764
No 90
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.54 E-value=1.1e-14 Score=113.39 Aligned_cols=95 Identities=21% Similarity=0.193 Sum_probs=86.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
+.++||+.++|..|+ .+++++|+|++....++..++.+ ++.. + |+.+++++++...||+ |..+++++|.+|+
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~~~~~~--f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~ 116 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-DPKKYF--GYRRLFRDECVFVKGK---YVKDLSLLGRDLS 116 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-CcCCCE--eeeEEECccccccCCe---EeecHHHcCCChh
Confidence 578999999999999 57999999999999999999887 8754 5 6999999999999997 8999999999999
Q ss_pred CEEEEecCHhhHHHHHHcCCeEE
Q 020871 257 DCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
+|++|||+.+|+.++.++|+.+-
T Consensus 117 ~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 117 NVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred cEEEEECCHHHhhcCccCEEEec
Confidence 99999999999999999997753
No 91
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.53 E-value=1.5e-14 Score=121.65 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=57.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
...+..++..+..+++++|++++++++|||+.||+.|++.+|+.+++-|. .++..+.++++.++..+ ..+.+.|
T Consensus 152 ~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na---~~~vk~~a~~v~~~n~~---~Gv~~~l 225 (230)
T PRK01158 152 KSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANA---DEELKEAADYVTEKSYG---EGVAEAI 225 (230)
T ss_pred eeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCc---cHHHHHhcceEecCCCc---ChHHHHH
Confidence 34566778899999999999999999999999999999999999776433 33334567777765443 3445555
Q ss_pred HHh
Q 020871 314 QNV 316 (320)
Q Consensus 314 ~~~ 316 (320)
+++
T Consensus 226 ~~~ 228 (230)
T PRK01158 226 EHL 228 (230)
T ss_pred HHH
Confidence 543
No 92
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.52 E-value=3.1e-13 Score=106.31 Aligned_cols=105 Identities=27% Similarity=0.402 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCc---------------hhhHHHHHHHhhCCccccCcceEEeCC-----CCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAAT---------------KSSVILCLENLIGMERFEGLDCFLAGD-----DVKQK 237 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~---------------~~~~~~~l~~~~~l~~~~~fd~v~~~~-----~~~~~ 237 (320)
+.+.||+.+.+..|++.|++++++||.+ ...+...++.. |+. ||.++..- ...++
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~-gv~----id~i~~Cph~p~~~c~cR 104 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ-GVK----IDGILYCPHHPEDNCDCR 104 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc-CCc----cceEEECCCCCCCCCccc
Confidence 3689999999999999999999999953 22233344443 442 56666542 25688
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
||++-++..+++++++++++.++|||...|+++|.++|+..+.+.++...
T Consensus 105 KP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~ 154 (181)
T COG0241 105 KPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGV 154 (181)
T ss_pred CCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCccc
Confidence 99999999999999999999999999999999999999998777665443
No 93
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.52 E-value=1.1e-13 Score=109.25 Aligned_cols=112 Identities=18% Similarity=0.238 Sum_probs=87.5
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHh
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI 266 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~ 266 (320)
-+..|++.|++++|+||.........++.+ |+..+ |+. .||+|+.+..+++++++++++|++|||+.+
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l-gi~~~--f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~n 109 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEEL-KIKRF--HEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLV 109 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHC-CCcEE--Eec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHH
Confidence 456788999999999999999999999997 99887 653 278999999999999999999999999999
Q ss_pred hHHHHHHcCCeEEEEeCCCCchhhccccceeccccccc-ChhHHHHHH
Q 020871 267 GLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNV-RLKDLELLL 313 (320)
Q Consensus 267 Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~l 313 (320)
|+.+++.+|+..++-+.. ......+.++...-... .+.++.+.+
T Consensus 110 Di~~~~~ag~~~am~nA~---~~lk~~A~~I~~~~~~~g~v~e~~e~i 154 (169)
T TIGR02726 110 DLSMMKRVGLAVAVGDAV---ADVKEAAAYVTTARGGHGAVREVAELI 154 (169)
T ss_pred HHHHHHHCCCeEECcCch---HHHHHhCCEEcCCCCCCCHHHHHHHHH
Confidence 999999999998764433 23334566665543332 234444433
No 94
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.51 E-value=2.2e-14 Score=120.14 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=71.0
Q ss_pred EEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 198 i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
..+.+....+.....++.+ +.... .+......+-+..+.++...+.++++++|++++++++|||+.||+.|++.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~ 187 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKEL-GLNLV-AVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFG 187 (225)
T ss_pred EEEeecCCHHHHHHHHHhc-CceEE-EecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCce
Confidence 3444444555555555554 43211 000001112345567788899999999999999999999999999999999999
Q ss_pred EEEEeCCCCchhhccccceecccccccC-hhHHHHHHHH
Q 020871 278 CVITYTSSTAEQDFKDAIAIYPDLSNVR-LKDLELLLQN 315 (320)
Q Consensus 278 ~v~v~~~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~ 315 (320)
+++-| ..++....++++.++..+.- -..+..+|++
T Consensus 188 vam~N---a~~~~k~~A~~vt~~~~~~G~~~~v~~~l~~ 223 (225)
T TIGR01482 188 VAVAN---AQPELKEWADYVTESPYGEGGAEAIGEILQA 223 (225)
T ss_pred EEcCC---hhHHHHHhcCeecCCCCCCcHHHHHHHHHHh
Confidence 77743 34444456777776544433 1114455544
No 95
>PRK08238 hypothetical protein; Validated
Probab=99.48 E-value=2e-12 Score=118.48 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=81.9
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
..+++||+.+++++++++|++++++|++.+...+..++++ |+ ||.++++++....||+++. ..+.+.++ .+
T Consensus 70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-Gl-----Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~ 140 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-GL-----FDGVFASDGTTNLKGAAKA-AALVEAFG--ER 140 (479)
T ss_pred hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CC-----CCEEEeCCCccccCCchHH-HHHHHHhC--cc
Confidence 3468899999999999999999999999999999888886 65 6899999988778777654 33445665 35
Q ss_pred CEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 257 DCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
+++|+||+.+|+.+++.+|-. +.|+.+..
T Consensus 141 ~~~yvGDS~~Dlp~~~~A~~a-v~Vn~~~~ 169 (479)
T PRK08238 141 GFDYAGNSAADLPVWAAARRA-IVVGASPG 169 (479)
T ss_pred CeeEecCCHHHHHHHHhCCCe-EEECCCHH
Confidence 699999999999999999954 56766544
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.48 E-value=1.8e-13 Score=125.69 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=78.6
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCch------------hhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATK------------SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA 247 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~------------~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~ 247 (320)
++||+.+.|+.|++.|++++|+||... ..+..+++.+ |+. |+.+++.++...+||+|.++..+
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l-gip----fdviia~~~~~~RKP~pGm~~~a 272 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL-GVP----FQVFIAIGAGFYRKPLTGMWDHL 272 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc-CCc----eEEEEeCCCCCCCCCCHHHHHHH
Confidence 689999999999999999999999766 3456667775 764 68888888778899999999999
Q ss_pred HHHcC----CCCCCEEEEecCHhhHHHHHHcCC
Q 020871 248 AKRLG----ISEKDCLVVEDSVIGLQAATRAGM 276 (320)
Q Consensus 248 ~~~l~----~~~~~~v~VGD~~~Dv~~a~~aG~ 276 (320)
+++++ +++++++||||...|+++++++|.
T Consensus 273 ~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 273 KEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 99985 899999999999988877766664
No 97
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.46 E-value=1.6e-13 Score=93.84 Aligned_cols=68 Identities=29% Similarity=0.503 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEecC-HhhHHHHHHcCCeEEEEeCCCCchhhcc----ccceecccccc
Q 020871 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDS-VIGLQAATRAGMACVITYTSSTAEQDFK----DAIAIYPDLSN 303 (320)
Q Consensus 236 ~~KP~~~~~~~~~~~l~~~~~~~v~VGD~-~~Dv~~a~~aG~~~v~v~~~~~~~~~l~----~~~~~~~~~~~ 303 (320)
.+||+|.+|..+++++++++++|+||||+ ..|+.+|+++|+.+++|.+|....+.+. .++++++++.+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e 74 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKE 74 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGG
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHh
Confidence 58999999999999999999999999999 6899999999999999999888766653 56666666544
No 98
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.46 E-value=3.2e-12 Score=107.86 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=83.6
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE------EeCCCCCCCCCCH---
Q 020871 171 QIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF------LAGDDVKQKKPDP--- 241 (320)
Q Consensus 171 ~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v------~~~~~~~~~KP~~--- 241 (320)
..+....+.+.||+.++++.|+++|++++|+|++....++..++++ |+... +..+ +..+.+..++|.|
T Consensus 113 ~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l-gl~~~--~~~IvSN~L~f~~dGvltG~~~P~i~ 189 (277)
T TIGR01544 113 EIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA-GVYHP--NVKVVSNFMDFDEDGVLKGFKGPLIH 189 (277)
T ss_pred HHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc-CCCCc--CceEEeeeEEECCCCeEeCCCCCccc
Confidence 3333356799999999999999999999999999999999999987 87654 4555 4345555667777
Q ss_pred ------HHHHHHHHHcC--CCCCCEEEEecCHhhHHHHHHc
Q 020871 242 ------SIYVTAAKRLG--ISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 242 ------~~~~~~~~~l~--~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
..+..+++.++ ..+++||+|||+.+|+.||...
T Consensus 190 ~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 190 TFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred ccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 66777888888 8999999999999999998877
No 99
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.46 E-value=6.8e-13 Score=114.32 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHcCCCC-CCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 239 PDPSIYVTAAKRLGISE-KDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~-~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.+...+.++++++|+++ +++++|||+.||+.|++.+|..+++-|.....
T Consensus 190 ~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~ 239 (273)
T PRK00192 190 DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPN 239 (273)
T ss_pred CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCC
Confidence 56668999999999999 99999999999999999999999886655443
No 100
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.44 E-value=3.7e-12 Score=109.75 Aligned_cols=78 Identities=12% Similarity=0.153 Sum_probs=60.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
+..+-.+...+..+++++|++++++++|||+.||++|.+.+|..+++- ++.++..+.++++.++..+ ..+...|
T Consensus 191 ~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~---NA~~~vK~~A~~vt~~n~~---dGva~~i 264 (270)
T PRK10513 191 LDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMG---NAIPSVKEVAQFVTKSNLE---DGVAFAI 264 (270)
T ss_pred eCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEec---CccHHHHHhcCeeccCCCc---chHHHHH
Confidence 445667788999999999999999999999999999999999998774 3444555678888765443 4455555
Q ss_pred HHhh
Q 020871 314 QNVV 317 (320)
Q Consensus 314 ~~~~ 317 (320)
++++
T Consensus 265 ~~~~ 268 (270)
T PRK10513 265 EKYV 268 (270)
T ss_pred HHHh
Confidence 5543
No 101
>PTZ00445 p36-lilke protein; Provisional
Probab=99.44 E-value=1.2e-12 Score=104.20 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=82.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhh---------------HHHHHHHhhCCccccCcceEEeCCC----------
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS---------------VILCLENLIGMERFEGLDCFLAGDD---------- 233 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~---------------~~~~l~~~~~l~~~~~fd~v~~~~~---------- 233 (320)
.+.|+...++..|++.|++++|+|-++... +...++.- +.+.- .+.+++.+.
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s-~~~~~--i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKS-KCDFK--IKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhc-Cccce--eeeeeeeCCcccCChhhhh
Confidence 578899999999999999999999877643 44455542 33322 345555322
Q ss_pred -CCCCCCCHHH--H--HHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 234 -VKQKKPDPSI--Y--VTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 234 -~~~~KP~~~~--~--~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
++..||+|++ | +.+++++|+.|++|+||+|+..++++|++.|+.++.+.++
T Consensus 152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 4677999999 9 9999999999999999999999999999999999998654
No 102
>PLN02887 hydrolase family protein
Probab=99.40 E-value=1.4e-11 Score=114.91 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=60.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
+..+-.+..++..+++++|+++++++.|||+.||++|.+.+|..++|-| +..+..+.++++.++.. -+.+...|
T Consensus 502 ~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgN---A~eeVK~~Ad~VT~sNd---EDGVA~aL 575 (580)
T PLN02887 502 VPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSN---GAEKTKAVADVIGVSND---EDGVADAI 575 (580)
T ss_pred ecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCC---CCHHHHHhCCEEeCCCC---cCHHHHHH
Confidence 3456677889999999999999999999999999999999999988743 44455567888876543 35566666
Q ss_pred HHh
Q 020871 314 QNV 316 (320)
Q Consensus 314 ~~~ 316 (320)
+++
T Consensus 576 ek~ 578 (580)
T PLN02887 576 YRY 578 (580)
T ss_pred HHh
Confidence 654
No 103
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.40 E-value=3.3e-11 Score=92.54 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=84.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
..+||++.+.|++-++.|++++|.|.++.........+. ..+..+ |+..+-- .-..|-....|..+++..|++|
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~l--fsGyfDt--tiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSL--FSGYFDT--TIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhh--hcceeec--cccccccchhHHHHHHhcCCCc
Confidence 468999999999999999999999999887554444332 234444 4444322 2335777889999999999999
Q ss_pred CCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 256 KDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.+++|+.|++..+.+|+.+|+.++++.+++..
T Consensus 178 ~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~ 209 (229)
T COG4229 178 AEILFLSDNPEELKAAAGVGLATGLAVRPGNA 209 (229)
T ss_pred hheEEecCCHHHHHHHHhcchheeeeecCCCC
Confidence 99999999999999999999999988776654
No 104
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.40 E-value=1.6e-11 Score=101.38 Aligned_cols=137 Identities=12% Similarity=0.096 Sum_probs=93.2
Q ss_pred CCCCChhHHHHHHHH--HHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCC----CC-----------CCC-C
Q 020871 177 TVEPRPGVLRLMDEA--KAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD----DV-----------KQK-K 238 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L--~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~----~~-----------~~~-K 238 (320)
.+++.||+.++++.+ +..|+.+.|+|+++.-.++.+|++. |+... |+.|++.- +- .+. -
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-gl~~~--f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C 145 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-GLRDC--FSEIFTNPACFDADGRLRVRPYHSHGCSLC 145 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-CCccc--cceEEeCCceecCCceEEEeCccCCCCCcC
Confidence 368999999999999 4579999999999999999999997 99887 77777641 10 111 1
Q ss_pred C----CHHHHHHHHHH---cCCCCCCEEEEecCHhhHHHHHHcCCe-EEEEeCCCCchhhcccc-ce-ecccccccChhH
Q 020871 239 P----DPSIYVTAAKR---LGISEKDCLVVEDSVIGLQAATRAGMA-CVITYTSSTAEQDFKDA-IA-IYPDLSNVRLKD 308 (320)
Q Consensus 239 P----~~~~~~~~~~~---l~~~~~~~v~VGD~~~Dv~~a~~aG~~-~v~v~~~~~~~~~l~~~-~~-~~~~~~~~~~~~ 308 (320)
| +...+..+++. -|+..++++||||+.||+-.+.+.+-. .++...++...+.+... .. ...=+.-.+-.|
T Consensus 146 ~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~~~~~~~~a~v~~W~~g~~ 225 (234)
T PF06888_consen 146 PPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLIQKNPGEVKAEVVPWSSGEE 225 (234)
T ss_pred CCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHHhcCCCcceeEEEecCCHHH
Confidence 1 23456666655 367789999999999999999998764 55655555444444321 11 111112224456
Q ss_pred HHHHHHHh
Q 020871 309 LELLLQNV 316 (320)
Q Consensus 309 l~~~l~~~ 316 (320)
+.+.|+++
T Consensus 226 i~~~l~~~ 233 (234)
T PF06888_consen 226 ILEILLQL 233 (234)
T ss_pred HHHHHHhh
Confidence 66666554
No 105
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2e-12 Score=107.72 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHh-hHHHHHHcCCeEEEEeCCCCchhhcccc---ceecccccccChhHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAATRAGMACVITYTSSTAEQDFKDA---IAIYPDLSNVRLKDL 309 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~-Dv~~a~~aG~~~v~v~~~~~~~~~l~~~---~~~~~~~~~~~~~~l 309 (320)
.-.+||.+.++..+.++++++|++|+||||+.+ ||..+++.|+++++|.+|....++.... ..++|||..-.+.++
T Consensus 220 ~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDL 299 (306)
T ss_pred eecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHH
Confidence 346899999999999999999999999999995 9999999999999999999887666443 456688877777666
Q ss_pred HHHHH
Q 020871 310 ELLLQ 314 (320)
Q Consensus 310 ~~~l~ 314 (320)
...++
T Consensus 300 ~~~~~ 304 (306)
T KOG2882|consen 300 LPLLN 304 (306)
T ss_pred hhhcc
Confidence 65554
No 106
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.37 E-value=2.7e-12 Score=106.67 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=64.3
Q ss_pred EEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 198 VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 198 i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+++.++.........++.. ++..+ ... ..-+-...+..+...++.+++++|++++++++|||+.||++|++.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~l~~~-~~~~~--~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~ 185 (215)
T TIGR01487 110 VIMREGKDVDEVREIIKER-GLNLV--DSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK 185 (215)
T ss_pred EEecCCccHHHHHHHHHhC-CeEEE--ecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe
Confidence 3344555555555555553 54432 110 0111123455667799999999999999999999999999999999999
Q ss_pred EEEEeCCCCchhhccccceeccccc
Q 020871 278 CVITYTSSTAEQDFKDAIAIYPDLS 302 (320)
Q Consensus 278 ~v~v~~~~~~~~~l~~~~~~~~~~~ 302 (320)
+++-+. .++....++++.++..
T Consensus 186 vam~na---~~~~k~~A~~v~~~~~ 207 (215)
T TIGR01487 186 VAVANA---DDQLKEIADYVTSNPY 207 (215)
T ss_pred EEcCCc---cHHHHHhCCEEcCCCC
Confidence 877543 3333445777766543
No 107
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.37 E-value=1.3e-12 Score=102.46 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=71.2
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeC-CchhhHHHHHHHhhCCc----------cccCcceEEeCCCCCCCCCCHHHHH
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSA-ATKSSVILCLENLIGME----------RFEGLDCFLAGDDVKQKKPDPSIYV 245 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn-~~~~~~~~~l~~~~~l~----------~~~~fd~v~~~~~~~~~KP~~~~~~ 245 (320)
.+.+||++.++|+.|+.+|++++++|- ...+.+..+|+.+ ++. .+ |+..-. ..+ .+..-|.
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l-~i~~~~~~~~~~~~~--F~~~eI----~~g-sK~~Hf~ 114 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL-EIDDADGDGVPLIEY--FDYLEI----YPG-SKTTHFR 114 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT-T-C----------CC--ECEEEE----SSS--HHHHHH
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc-CCCccccccccchhh--cchhhe----ecC-chHHHHH
Confidence 368999999999999999999999994 4566778888886 888 66 554322 222 6677899
Q ss_pred HHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 246 TAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 246 ~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
.+.+..|++.++++||+|...+++.....|+.++.+.+|-.
T Consensus 115 ~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt 155 (169)
T PF12689_consen 115 RIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLT 155 (169)
T ss_dssp HHHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--
T ss_pred HHHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCC
Confidence 99999999999999999999999999999999999988543
No 108
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.37 E-value=6.4e-12 Score=108.31 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccce--ecccccccChhHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIA--IYPDLSNVRLKDLEL 311 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~--~~~~~~~~~~~~l~~ 311 (320)
+..+-.+...++.+++++|+++++++.|||+.||++|.+.+|...++-| +.++....+++ ++++. .-+.+..
T Consensus 183 ~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N---a~~~vK~~A~~~~v~~~n---~edGva~ 256 (272)
T PRK15126 183 LPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN---AMPQLRAELPHLPVIGHC---RNQAVSH 256 (272)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC---ChHHHHHhCCCCeecCCC---cchHHHH
Confidence 3455567889999999999999999999999999999999999887743 33344445553 55542 3456666
Q ss_pred HHHHhh
Q 020871 312 LLQNVV 317 (320)
Q Consensus 312 ~l~~~~ 317 (320)
.|++++
T Consensus 257 ~l~~~~ 262 (272)
T PRK15126 257 YLTHWL 262 (272)
T ss_pred HHHHHh
Confidence 776655
No 109
>PRK10976 putative hydrolase; Provisional
Probab=99.35 E-value=2.4e-11 Score=104.44 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccc--eecccccccChhHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAI--AIYPDLSNVRLKDLEL 311 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~ 311 (320)
+..+-.+..+++.+++++|++++++++|||+.||++|.+.+|..+++-|. .++..+.++ +++++. .-+.+..
T Consensus 185 ~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~~~v~~~n---~edGVa~ 258 (266)
T PRK10976 185 MAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA---HQRLKDLLPELEVIGSN---ADDAVPH 258 (266)
T ss_pred EcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC---cHHHHHhCCCCeecccC---chHHHHH
Confidence 34555668899999999999999999999999999999999999877433 333334444 565543 3355666
Q ss_pred HHHHhh
Q 020871 312 LLQNVV 317 (320)
Q Consensus 312 ~l~~~~ 317 (320)
.|++++
T Consensus 259 ~l~~~~ 264 (266)
T PRK10976 259 YLRKLY 264 (266)
T ss_pred HHHHHh
Confidence 666654
No 110
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.33 E-value=2.9e-11 Score=103.82 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
+..+..+......+++++|+++++++.|||+.||++|.+.+|..+++-|. .++....++.+..+.. -+.+...|
T Consensus 184 ~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na---~~~~k~~A~~vt~~n~---~~Gv~~~l 257 (264)
T COG0561 184 TPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA---DEELKELADYVTTSND---EDGVAEAL 257 (264)
T ss_pred ecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC---CHHHHhhCCcccCCcc---chHHHHHH
Confidence 35667778899999999999999999999999999999999999887444 3333345554434433 34555555
Q ss_pred HHhh
Q 020871 314 QNVV 317 (320)
Q Consensus 314 ~~~~ 317 (320)
++++
T Consensus 258 ~~~~ 261 (264)
T COG0561 258 EKLL 261 (264)
T ss_pred HHHh
Confidence 5543
No 111
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.32 E-value=3.2e-12 Score=107.53 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCE-EEEecCH-hhHHHHHHcCCeEEEEeCC
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDC-LVVEDSV-IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~-v~VGD~~-~Dv~~a~~aG~~~v~v~~~ 284 (320)
..+||+|.+|..++++++++++++ +||||+. +|+.+|+++|+.+++|.+|
T Consensus 185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 467999999999999999998887 9999999 7999999999999999764
No 112
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.29 E-value=3.1e-11 Score=94.22 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHCCC--cEEEEeCCc-------hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGK--KVAVCSAAT-------KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~--~i~i~Tn~~-------~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (320)
.+.|.+.+.++++++.+. ++.|+||+. ...++..-+.+ |+.-+ . ....|| ..+..+++
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-gIpvl---~-------h~~kKP--~~~~~i~~ 125 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL-GIPVL---R-------HRAKKP--GCFREILK 125 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh-CCcEE---E-------eCCCCC--ccHHHHHH
Confidence 456666677777777765 499999984 44444444444 66532 1 124577 46667777
Q ss_pred HcCC-----CCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCC
Q 020871 250 RLGI-----SEKDCLVVEDSV-IGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 250 ~l~~-----~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~ 285 (320)
.++. .|+++++|||.. .|+.+|...|+.+||+..|.
T Consensus 126 ~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 126 YFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 7754 499999999999 79999999999999998764
No 113
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.28 E-value=1.7e-10 Score=101.56 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-----CCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCch
Q 020871 235 KQKKPDPSIYVTAAKRL--------GI-----SEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTAE 288 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l--------~~-----~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~ 288 (320)
..+||++.+|+.+++.+ ++ ++++++||||++ .|+.+|+++||.+++|.+|....
T Consensus 230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~ 297 (321)
T TIGR01456 230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNG 297 (321)
T ss_pred EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCC
Confidence 45999999999998887 43 447999999999 79999999999999999885544
No 114
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.23 E-value=3.5e-10 Score=97.35 Aligned_cols=82 Identities=7% Similarity=-0.079 Sum_probs=58.9
Q ss_pred CCCCCCCHHHHHHHHHHcCC---CCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhc----cccceecccccccCh
Q 020871 234 VKQKKPDPSIYVTAAKRLGI---SEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDF----KDAIAIYPDLSNVRL 306 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~---~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l----~~~~~~~~~~~~~~~ 306 (320)
+..+-.+...++.+++++|+ ++++++.|||+.||++|.+.+|..++|-+.... .+.+ ..++++... ...
T Consensus 182 ~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~~~-~~~l~~~~~~~~~~~~~---~~~ 257 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLNRE-GVHLQDDDPARVYRTQR---EGP 257 (271)
T ss_pred ecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCCCC-CcccccccCCceEeccC---CCc
Confidence 44566778899999999999 999999999999999999999999887643311 1112 234444433 344
Q ss_pred hHHHHHHHHhhhc
Q 020871 307 KDLELLLQNVVAA 319 (320)
Q Consensus 307 ~~l~~~l~~~~~~ 319 (320)
+.+.+.++.++.+
T Consensus 258 ~g~~~~l~~~~~~ 270 (271)
T PRK03669 258 EGWREGLDHFFSA 270 (271)
T ss_pred HHHHHHHHHHHhc
Confidence 5677777766654
No 115
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.20 E-value=4.4e-10 Score=94.97 Aligned_cols=87 Identities=20% Similarity=0.313 Sum_probs=65.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhh---HHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
....++||+.++|+.|+++|++++++||..... ....++.. |+... .++.++...+ .++++.-...+.+.++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~-Gi~~~-~~d~lllr~~---~~~K~~rr~~I~~~y~ 189 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRF-GFPQA-DEEHLLLKKD---KSSKESRRQKVQKDYE 189 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHc-CcCCC-CcceEEeCCC---CCCcHHHHHHHHhcCC
Confidence 345799999999999999999999999987443 33566665 88653 1466665543 2456677788877777
Q ss_pred CCCCCEEEEecCHhhHHHH
Q 020871 253 ISEKDCLVVEDSVIGLQAA 271 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a 271 (320)
+ +++|||+.+|+...
T Consensus 190 I----vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 190 I----VLLFGDNLLDFDDF 204 (266)
T ss_pred E----EEEECCCHHHhhhh
Confidence 6 89999999999664
No 116
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.20 E-value=3.2e-10 Score=96.41 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 233 ~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
-+..+.++...+..+++++|+++++|++|||+.||+.|++.+|..++.+.+.
T Consensus 161 i~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 161 ILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred EEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence 3567789999999999999999999999999999999999966555555443
No 117
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.20 E-value=3.9e-10 Score=94.17 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEE
Q 020871 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
.++..+..+++++|+++++|++|||+.||+.|.+.+|..++
T Consensus 179 ~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 179 SKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred CHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 35558999999999999999999999999999999998865
No 118
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.19 E-value=7.3e-11 Score=99.32 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=56.8
Q ss_pred CCC-hhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHH
Q 020871 179 EPR-PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSI 243 (320)
Q Consensus 179 ~~~-~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~ 243 (320)
++. ||+.++|.+|+++|++++|+|++.+..+...++.+ |+..+ |+.+++++++...||+++.
T Consensus 145 ~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-GLd~Y--FdvIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 145 RIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-KLDRY--FDIIISGGHKAEEYSTMST 207 (301)
T ss_pred ccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-CCCcc--cCEEEECCccccCCCCccc
Confidence 344 99999999999999999999999999999999997 99999 9999999999999998864
No 119
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.18 E-value=1.2e-09 Score=90.01 Aligned_cols=101 Identities=9% Similarity=-0.055 Sum_probs=68.7
Q ss_pred CCCChhHHHHHH-HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCC-CCCC-CC---CC---HHHHHHHH
Q 020871 178 VEPRPGVLRLMD-EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD-DVKQ-KK---PD---PSIYVTAA 248 (320)
Q Consensus 178 ~~~~~g~~~~l~-~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~-~~~~-~K---P~---~~~~~~~~ 248 (320)
..++||+.++|+ .+++.|++++|+||+....++.+.+.. ++... +.+++.. ++.. ++ |. .+=...+.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~-~~~~~---~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~ 168 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS-NFIHR---LNLIASQIERGNGGWVLPLRCLGHEKVAQLE 168 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc-ccccc---CcEEEEEeEEeCCceEcCccCCChHHHHHHH
Confidence 368999999996 788899999999999999888888774 43221 2333332 1100 11 11 11122333
Q ss_pred HHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeC
Q 020871 249 KRLGISEKDCLVVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 249 ~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
+.++.+.+.+.+.|||.+|+.+...+|-+.+ ||.
T Consensus 169 ~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~-Vnp 202 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDSKQDNPLLAFCEHRWR-VSK 202 (210)
T ss_pred HHhCCChhheEEecCCcccHHHHHhCCCcEE-ECc
Confidence 4456666788999999999999999999964 433
No 120
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.17 E-value=1.1e-10 Score=91.58 Aligned_cols=94 Identities=20% Similarity=0.322 Sum_probs=65.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCc---h-----------hhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAAT---K-----------SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYV 245 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~---~-----------~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~ 245 (320)
..|++.+.|+.|.+.|+.|+|+||.. . ..+..+++.+ ++. +..+++...-..+||.+-++.
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l-~ip----~~~~~a~~~d~~RKP~~GM~~ 104 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL-GIP----IQVYAAPHKDPCRKPNPGMWE 104 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC-TS-----EEEEECGCSSTTSTTSSHHHH
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc-CCc----eEEEecCCCCCCCCCchhHHH
Confidence 45689999999999999999999873 1 1222333343 443 233444344478999999999
Q ss_pred HHHHHcCC----CCCCEEEEecC-----------HhhHHHHHHcCCeE
Q 020871 246 TAAKRLGI----SEKDCLVVEDS-----------VIGLQAATRAGMAC 278 (320)
Q Consensus 246 ~~~~~l~~----~~~~~v~VGD~-----------~~Dv~~a~~aG~~~ 278 (320)
.+++.++. +.++++||||. ..|.+.|.++|+..
T Consensus 105 ~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 105 FALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp HHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99999874 88999999996 57999999999975
No 121
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.15 E-value=1.3e-09 Score=93.10 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
+..+-.+...++.+++.+|++++++++|||+.||+.|++.+|+.+++.+ ........++++.++..+
T Consensus 183 ~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~n---a~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 183 TAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGN---ADEELKALADYVTDSNNE 249 (256)
T ss_pred cCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecC---chHHHHHhCCEEecCCCC
Confidence 3455667889999999999999999999999999999999999977742 333334457777765443
No 122
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.14 E-value=4.8e-10 Score=97.78 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhC-------CccccCcceEEeCCCC----------------
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG-------MERFEGLDCFLAGDDV---------------- 234 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~-------l~~~~~fd~v~~~~~~---------------- 234 (320)
+..+||+.++|+.|+++|++++|+||+....++..++.++| +..+ ||.++++..-
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~y--FD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDY--FDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhh--CcEEEeCCCCCcccCCCCceEEEeCC
Confidence 56799999999999999999999999999999999998646 8888 9988886431
Q ss_pred -CCCCCCH------------HHHHHHHHHcCCCCCCEEEEecCH-hhHHHHH-HcCCeEEEEeC
Q 020871 235 -KQKKPDP------------SIYVTAAKRLGISEKDCLVVEDSV-IGLQAAT-RAGMACVITYT 283 (320)
Q Consensus 235 -~~~KP~~------------~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~-~aG~~~v~v~~ 283 (320)
+..++.. -....+.+.+|+.+++|+||||+. .|+.+++ .+||.+++|..
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 1111111 125677888999999999999999 6999998 89999999855
No 123
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.14 E-value=4e-10 Score=95.01 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 233 DVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 233 ~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
-+..+++++..+..+++++|+++++|++|||+.||+.|++.+|...++
T Consensus 153 i~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav 200 (236)
T TIGR02471 153 VLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV 200 (236)
T ss_pred EeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE
Confidence 356678899999999999999999999999999999999999988765
No 124
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.14 E-value=5.8e-10 Score=90.90 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCC----------C---CCHHHHHHH-
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK----------K---PDPSIYVTA- 247 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~----------K---P~~~~~~~~- 247 (320)
|++.++|+.++++|++++|+|++....++.+++.+ |+... .+++....... . -+...+..+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~-~i~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~ 166 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERL-GIDDD----NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELY 166 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHT-TSSEG----GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc-CCCce----EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHH
Confidence 55559999999999999999999999999888876 88753 12222110000 0 144455555
Q ss_pred --HHHcCCCCCCEEEEecCHhhHHHHH
Q 020871 248 --AKRLGISEKDCLVVEDSVIGLQAAT 272 (320)
Q Consensus 248 --~~~l~~~~~~~v~VGD~~~Dv~~a~ 272 (320)
... +.....+++|||+.+|+.+++
T Consensus 167 ~~~~~-~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 167 IRDEE-DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHH-THTCCEEEEEESSGGGHHHHH
T ss_pred HHhhc-CCCCCeEEEEECCHHHHHHhC
Confidence 334 788899999999999999875
No 125
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.13 E-value=2e-10 Score=90.33 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCHh-hHHHHHHcCCeEEEEeCCCCch
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAATRAGMACVITYTSSTAE 288 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~-Dv~~a~~aG~~~v~v~~~~~~~ 288 (320)
-.+||+|.+|+.+++.+|++|++|+||||..+ |+.+|...||..+.|..|....
T Consensus 178 vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rp 232 (262)
T KOG3040|consen 178 VVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRP 232 (262)
T ss_pred EecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCC
Confidence 46899999999999999999999999999996 9999999999999999987665
No 126
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.10 E-value=3.2e-09 Score=84.42 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=89.0
Q ss_pred CCCCChhHHHHHHHHHHCCC-cEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC----CCCC-----CC------CCC
Q 020871 177 TVEPRPGVLRLMDEAKAAGK-KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG----DDVK-----QK------KPD 240 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~-~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~----~~~~-----~~------KP~ 240 (320)
.++..||+.++++.+++.|- .+.|+|..+.-.++.+++++ ++..+ |+.+++. ++-+ .. +-.
T Consensus 82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~-~~~d~--F~~IfTNPa~~da~G~L~v~pyH~~hsC~~C 158 (256)
T KOG3120|consen 82 SIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAA-GIHDL--FSEIFTNPACVDASGRLLVRPYHTQHSCNLC 158 (256)
T ss_pred cCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHc-cHHHH--HHHHhcCCcccCCCCcEEeecCCCCCccCcC
Confidence 36899999999999999985 99999999999999999997 99888 7777653 1100 00 001
Q ss_pred H------HHHHHHHH---HcCCCCCCEEEEecCHhhHHHHHHc-CCeEEEEeCCCCchhhccc-cceec-ccccccChhH
Q 020871 241 P------SIYVTAAK---RLGISEKDCLVVEDSVIGLQAATRA-GMACVITYTSSTAEQDFKD-AIAIY-PDLSNVRLKD 308 (320)
Q Consensus 241 ~------~~~~~~~~---~l~~~~~~~v~VGD~~~Dv~~a~~a-G~~~v~v~~~~~~~~~l~~-~~~~~-~~~~~~~~~~ 308 (320)
| ..+.++.. +-|+..++.+||||+.||+-..... +..+++-..++........ +-.+. .-+.--+=.|
T Consensus 159 PsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k~~~~~p~~~kasV~~W~sg~d 238 (256)
T KOG3120|consen 159 PSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWKLISANPMLLKASVLEWSSGED 238 (256)
T ss_pred chhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHhhhhcCcceeeeeEEecccHHH
Confidence 1 12333332 2377788999999999999877665 4566665555443322111 11111 1111223467
Q ss_pred HHHHHHHhhh
Q 020871 309 LELLLQNVVA 318 (320)
Q Consensus 309 l~~~l~~~~~ 318 (320)
+..+|+.++.
T Consensus 239 ~~~~L~~lik 248 (256)
T KOG3120|consen 239 LERILQQLIK 248 (256)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 127
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.02 E-value=4.2e-10 Score=95.57 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccc
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSN 303 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~ 303 (320)
..+-.+..+++.+++.+|++++++++|||+.||+.|.+.+|..+++ +++.++....++.+.++..+
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am---~na~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAM---GNATPELKKAADYITPSNND 247 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEE---TTS-HHHHHHSSEEESSGTC
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEE---cCCCHHHHHhCCEEecCCCC
Confidence 3455667899999999999999999999999999999999999776 44444445667777776554
No 128
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.02 E-value=2.3e-09 Score=101.48 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred CCCChhHHHHHHHHHHCC-CcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g-~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
..++||+.++|+.|++.| ++++++||.+.......++++ |+.++ |..+ .+++++ .++++++..++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l-gi~~~--f~~~-------~p~~K~----~~v~~l~~~~~ 448 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL-GIDEV--HAEL-------LPEDKL----AIVKELQEEGG 448 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh-CCCee--eccC-------CHHHHH----HHHHHHHHcCC
Confidence 469999999999999999 999999999999999999997 99877 5532 112223 35555555677
Q ss_pred CEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 257 DCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
+|+||||+.||+.++++||+.+.+ +.........++.++.+ .++..+.+++
T Consensus 449 ~v~~vGDg~nD~~al~~A~vgia~---g~~~~~~~~~Ad~vi~~---~~~~~l~~~i 499 (556)
T TIGR01525 449 VVAMVGDGINDAPALAAADVGIAM---GAGSDVAIEAADIVLLN---DDLSSLPTAI 499 (556)
T ss_pred EEEEEECChhHHHHHhhCCEeEEe---CCCCHHHHHhCCEEEeC---CCHHHHHHHH
Confidence 999999999999999999965444 33333333456666654 2344444443
No 129
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.00 E-value=2.6e-08 Score=85.10 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=55.4
Q ss_pred CCCCCCHHHHHHHHHHcCCC--CCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccc---cc-eecccccccChhH
Q 020871 235 KQKKPDPSIYVTAAKRLGIS--EKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKD---AI-AIYPDLSNVRLKD 308 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~--~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~---~~-~~~~~~~~~~~~~ 308 (320)
..+-.+...+..+++++|++ .+++++|||+.||+.|.+.+|..+++-|..... +.++. +. ++.++ ..-+.
T Consensus 172 ~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~-~~lk~~~~a~~~vt~~---~~~dG 247 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPN-VSLKPGDPGSFLLTPA---PGPEG 247 (256)
T ss_pred cCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCc-cccCccCCCcEEEcCC---CCcHH
Confidence 44556777899999999999 999999999999999999999998876543211 22322 23 45433 23455
Q ss_pred HHHHHHHh
Q 020871 309 LELLLQNV 316 (320)
Q Consensus 309 l~~~l~~~ 316 (320)
+.+.|+++
T Consensus 248 va~~l~~~ 255 (256)
T TIGR01486 248 WREALEHL 255 (256)
T ss_pred HHHHHHHh
Confidence 66666654
No 130
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.5e-08 Score=78.27 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE--------------EeCCC--CCCCCCCH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--------------LAGDD--VKQKKPDP 241 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v--------------~~~~~--~~~~KP~~ 241 (320)
+.+.||..++++..++++++++|+|++....+..+++.+.|-+.....|.+ +.-++ .+..||.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~- 150 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSS- 150 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcch-
Confidence 689999999999999999999999999999999999987544433111211 11111 3344443
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeE
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMAC 278 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~ 278 (320)
.++.+.-+++.++|.||+..|+.+|+....-.
T Consensus 151 -----vI~~l~e~~e~~fy~GDsvsDlsaaklsDllF 182 (220)
T COG4359 151 -----VIHELSEPNESIFYCGDSVSDLSAAKLSDLLF 182 (220)
T ss_pred -----hHHHhhcCCceEEEecCCcccccHhhhhhhHh
Confidence 45556667788999999999999999877543
No 131
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.98 E-value=5.2e-10 Score=88.26 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=84.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
+..+||+.++|..|.+. +.++|.|++.+..+..+++.+ +... + |+.+++.++....+|. |...++.+|.+++
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-dp~~~~--f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~ 113 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-DRGGKV--ISRRLYRESCVFTNGK---YVKDLSLVGKDLS 113 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-CcCCCE--EeEEEEccccEEeCCC---EEeEchhcCCChh
Confidence 57899999999999998 999999999999999999987 7654 6 7888888776656665 6677888999999
Q ss_pred CEEEEecCHhhHHHHHHcCCeEEEEe
Q 020871 257 DCLVVEDSVIGLQAATRAGMACVITY 282 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v~v~ 282 (320)
+||+|||++.|+.++..+|+.+....
T Consensus 114 ~vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 114 KVIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred hEEEEeCChhhhccCccCEeecCCCC
Confidence 99999999999999999998876544
No 132
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.93 E-value=6.4e-09 Score=87.82 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCC
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV 234 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~ 234 (320)
.|++.++|++|++.|++++|+||+.+..+...++.+ |+..+ |+.++++++.
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l-gL~~y--FDvII~~g~i 200 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET-KLEGY--FDIIICGGRK 200 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc-CCCcc--ccEEEECCCc
Confidence 389999999999999999999999999999999997 99998 8988887663
No 133
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.92 E-value=7.9e-09 Score=87.44 Aligned_cols=91 Identities=14% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHH--HHHHHhhCCcc-ccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI--LCLENLIGMER-FEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~--~~l~~~~~l~~-~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++||+.++|+.|+++|++++++||+.+.... ..++++ |+.. + |+.++++.+... ..+..++++++.+
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~-gl~~~~--~~~Ii~s~~~~~-----~~l~~~~~~~~~~ 94 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL-GINADL--PEMIISSGEIAV-----QMILESKKRFDIR 94 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC-CCCccc--cceEEccHHHHH-----HHHHhhhhhccCC
Confidence 468999999999999999999999999877655 567776 8886 6 899998876542 4677777888999
Q ss_pred CCCEEEEecCHhhHHHHHHcCC
Q 020871 255 EKDCLVVEDSVIGLQAATRAGM 276 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~ 276 (320)
+++|++|||+..|++.....|.
T Consensus 95 ~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 95 NGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred CceEEEeCCcccchhhhcCCCc
Confidence 9999999999999887765554
No 134
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.90 E-value=1.7e-07 Score=88.05 Aligned_cols=44 Identities=5% Similarity=-0.049 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEE--ecCHhhHHHHHHcCCeEEE
Q 020871 237 KKPDPSIYVTAAKRLGISEKDCLVV--EDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~~~~~v~V--GD~~~Dv~~a~~aG~~~v~ 280 (320)
+-.+...++.+++.++++.++++.| ||+.||+.|.+.+|..+++
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 4566779999999999999999999 9999999999999999766
No 135
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.90 E-value=1e-08 Score=96.56 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=79.0
Q ss_pred CCCChhHHHHHHHHHHCCC-cEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGK-KVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~-~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
-.++||+.++++.|++.|+ +++++||.+.......++++ |++++ |..+. +.++ ..++++++...+
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l-gi~~~--f~~~~-------p~~K----~~~i~~l~~~~~ 426 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL-GIDEV--HAELL-------PEDK----LEIVKELREKYG 426 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc-CChhh--hhccC-------cHHH----HHHHHHHHhcCC
Confidence 3689999999999999999 99999999999999999997 99877 54321 1222 346666666678
Q ss_pred CEEEEecCHhhHHHHHHcCCeEEEEeCC-CCchhhccccceec
Q 020871 257 DCLVVEDSVIGLQAATRAGMACVITYTS-STAEQDFKDAIAIY 298 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v~v~~~-~~~~~~l~~~~~~~ 298 (320)
+|+||||+.||+.+++.||+...+ + .........++.++
T Consensus 427 ~v~~vGDg~nD~~al~~A~vgia~---g~~~~~~~~~~ad~vl 466 (536)
T TIGR01512 427 PVAMVGDGINDAPALAAADVGIAM---GASGSDVAIETADVVL 466 (536)
T ss_pred EEEEEeCCHHHHHHHHhCCEEEEe---CCCccHHHHHhCCEEE
Confidence 999999999999999999975443 3 22333334555555
No 136
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.88 E-value=3e-08 Score=82.73 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHcCC--CCCCEEEEecCHhhHHHHHHcCCeEE
Q 020871 237 KKPDPSIYVTAAKRLGI--SEKDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~--~~~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
+-.++.....+++.+++ .+++|++|||+.||+.|.+.+|+.++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 33445577888888865 67799999999999999999999864
No 137
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.84 E-value=4.9e-08 Score=71.13 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
-++|+.+.+.+++|++. +.+++.|+.....+...++-. |+.. +.++.+ .+++.-..+++.|+-+-+.
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~-gi~~----~rv~a~-------a~~e~K~~ii~eLkk~~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFV-GIPV----ERVFAG-------ADPEMKAKIIRELKKRYEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHc-CCce----eeeecc-------cCHHHHHHHHHHhcCCCcE
Confidence 37999999999999999 999999998888787777765 7763 445443 3455667888888877799
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 258 CLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
|+||||+.||+.+.++|.+..+-+...+.....+..++.++.+
T Consensus 96 ~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~ 138 (152)
T COG4087 96 VVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKE 138 (152)
T ss_pred EEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhh
Confidence 9999999999999999999866665555555545556655443
No 138
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.81 E-value=3e-08 Score=93.77 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
..++||+.++++.|++.|++++++|+.+....+..++++ |++ + |..+ .++++. .+++++..++++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l-gi~-~--~~~~-------~p~~K~----~~v~~l~~~~~~ 468 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL-GIN-V--RAEV-------LPDDKA----ALIKELQEKGRV 468 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc-CCc-E--EccC-------ChHHHH----HHHHHHHHcCCE
Confidence 368999999999999999999999999999999999887 885 2 2211 122333 344444446789
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 258 CLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
|+||||+.||+.++++||+...+ +.........++.++.+ .++.+|.+++.
T Consensus 469 v~~VGDg~nD~~al~~A~vgia~---g~g~~~a~~~Advvl~~---~~l~~l~~~i~ 519 (562)
T TIGR01511 469 VAMVGDGINDAPALAQADVGIAI---GAGTDVAIEAADVVLMR---NDLNDVATAID 519 (562)
T ss_pred EEEEeCCCccHHHHhhCCEEEEe---CCcCHHHHhhCCEEEeC---CCHHHHHHHHH
Confidence 99999999999999999976443 22333333456665542 24455554443
No 139
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.78 E-value=4.1e-08 Score=97.29 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.++||+.+.++.|++.|++++++|+.+....+...+++ |+..+ |..+ .|+....++++++..+++|
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~l-gi~~~--~~~~-----------~p~~K~~~i~~l~~~~~~v 715 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEA-GIDEV--IAGV-----------LPDGKAEAIKRLQSQGRQV 715 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCCEE--EeCC-----------CHHHHHHHHHHHhhcCCEE
Confidence 67899999999999999999999999999888888886 88765 3321 1333456777888888899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
+||||+.||+.+++.||+...+ +......+..++.++ ...++.+|..+++
T Consensus 716 ~~vGDg~nD~~al~~Agvgia~---g~g~~~a~~~ad~vl---~~~~~~~i~~~i~ 765 (834)
T PRK10671 716 AMVGDGINDAPALAQADVGIAM---GGGSDVAIETAAITL---MRHSLMGVADALA 765 (834)
T ss_pred EEEeCCHHHHHHHHhCCeeEEe---cCCCHHHHHhCCEEE---ecCCHHHHHHHHH
Confidence 9999999999999999996555 333444444555433 2234555555554
No 140
>PLN02382 probable sucrose-phosphatase
Probab=98.74 E-value=2.7e-07 Score=83.79 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHc---CCCCCCEEEEecCHhhHHHHHHcC-CeEEE
Q 020871 235 KQKKPDPSIYVTAAKRL---GISEKDCLVVEDSVIGLQAATRAG-MACVI 280 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l---~~~~~~~v~VGD~~~Dv~~a~~aG-~~~v~ 280 (320)
..+-.+...+..+++++ |++++++++|||+.||++|.+.+| ..+++
T Consensus 171 p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam 220 (413)
T PLN02382 171 PQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV 220 (413)
T ss_pred eCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE
Confidence 34555678999999999 999999999999999999999999 56555
No 141
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.72 E-value=9.2e-09 Score=84.73 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
.+.+.+++..+..++++++++++++++|||+.||+.+++.+|+..++
T Consensus 158 ~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 158 LPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred ecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 45678889999999999999999999999999999999999998653
No 142
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.70 E-value=1.4e-06 Score=73.96 Aligned_cols=50 Identities=10% Similarity=-0.091 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHcCCC--CCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 237 KKPDPSIYVTAAKRLGIS--EKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~--~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.-++......+.+.+.-. +-.++.+||++||+.|.+.+...+| |.++...
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vv-i~~~~~~ 257 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVV-LPSPIAD 257 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEE-ecCCCCC
Confidence 345666777777776543 4479999999999999999999965 4555544
No 143
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.70 E-value=4.7e-08 Score=79.58 Aligned_cols=109 Identities=16% Similarity=0.281 Sum_probs=64.0
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchh-------hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHH
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKS-------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~-------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (320)
..++.||+.+.|+.|.+.|+.++++|..... .-...+++.++-..+ -+.++++ .|-
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~--~~~~~~~-----~K~---------- 133 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPY--DNLIFTG-----DKT---------- 133 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHH--CCEEEES-----SGG----------
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCch--heEEEec-----CCC----------
Confidence 4589999999999999999888877766543 223455554343222 2344432 121
Q ss_pred HcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
.++. + ++|+|++..+..+...|+.++++..+++.... .-....+|.|+.+++-
T Consensus 134 ~v~~---D-vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~--------~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 134 LVGG---D-VLIDDRPHNLEQFANAGIPVILFDQPYNRDES--------NFPRVNNWEEIEDLIL 186 (191)
T ss_dssp GC-----S-EEEESSSHHHSS-SSESSEEEEE--GGGTT----------TSEEE-STTSHHHHHH
T ss_pred eEec---c-EEecCChHHHHhccCCCceEEEEcCCCCCCCC--------CCccCCCHHHHHHHHH
Confidence 1222 2 78999999999999999999999888776432 1122235677666653
No 144
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.70 E-value=5.2e-07 Score=74.35 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=62.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhh---HHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
+..+..|++.++++.|+++|++++++|+..... ....|... |+..+ +.++-...-...|+...+-....+++-
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~-G~~~~---~~LiLR~~~d~~~~~~~yKs~~R~~l~ 192 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINA-GFTGW---KHLILRGLEDSNKTVVTYKSEVRKSLM 192 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHc-CCCCc---CeeeecCCCCCCchHhHHHHHHHHHHH
Confidence 456899999999999999999999999998665 44455554 65543 555554322223332221112221221
Q ss_pred CCC-CCEEEEecCHhhHHHHHHcCCeEEEEeC
Q 020871 253 ISE-KDCLVVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 253 ~~~-~~~v~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
-.. .=+..|||..+|+.+. .+|..+.-+++
T Consensus 193 ~~GYrIv~~iGDq~sDl~G~-~~~~RtFKLPN 223 (229)
T TIGR01675 193 EEGYRIWGNIGDQWSDLLGS-PPGRRTFKLPN 223 (229)
T ss_pred hCCceEEEEECCChHHhcCC-CccCceeeCCC
Confidence 111 2256899999999663 55555554443
No 145
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.69 E-value=2.4e-07 Score=78.41 Aligned_cols=67 Identities=13% Similarity=-0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc-------CCeEEEEeCCCCchhhccccceecccccccChhHHHHHH
Q 020871 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA-------GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLL 313 (320)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a-------G~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l 313 (320)
...+..++++++..+++++||||+.+|+.+++.+ |..++.+..+.. ...+.++++ ++.++.++|
T Consensus 169 g~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~~----~~~A~~~~~-----~~~~v~~~L 239 (244)
T TIGR00685 169 GEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGSK----KTVAKFHLT-----GPQQVLEFL 239 (244)
T ss_pred HHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCCc----CCCceEeCC-----CHHHHHHHH
Confidence 5899999999999999999999999999999999 666677753321 123455554 566777777
Q ss_pred HHh
Q 020871 314 QNV 316 (320)
Q Consensus 314 ~~~ 316 (320)
+.+
T Consensus 240 ~~l 242 (244)
T TIGR00685 240 GLL 242 (244)
T ss_pred HHH
Confidence 654
No 146
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.66 E-value=8.2e-08 Score=69.91 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=65.4
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCH---HHHHHHHHHc--
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP---SIYVTAAKRL-- 251 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~---~~~~~~~~~l-- 251 (320)
.+.++|.+.++++.+|..|+-+..+|=+......+.++.+ ++.+| |+-++. +|+| .++.++++.+
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral-~~~~y--Fhy~Vi-------ePhP~K~~ML~~llr~i~~ 108 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRAL-DLLQY--FHYIVI-------EPHPYKFLMLSQLLREINT 108 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHh-chhhh--EEEEEe-------cCCChhHHHHHHHHHHHHH
Confidence 3689999999999999999999999988888788888887 99999 887664 2333 3555565554
Q ss_pred ----CCCCCCEEEEecCHhhH
Q 020871 252 ----GISEKDCLVVEDSVIGL 268 (320)
Q Consensus 252 ----~~~~~~~v~VGD~~~Dv 268 (320)
.+.|++++|++|+.--+
T Consensus 109 er~~~ikP~~Ivy~DDR~iH~ 129 (164)
T COG4996 109 ERNQKIKPSEIVYLDDRRIHF 129 (164)
T ss_pred hhccccCcceEEEEecccccH
Confidence 37899999999998433
No 147
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.60 E-value=4.8e-07 Score=65.29 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=51.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHH---HHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI---LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~---~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
.++||+.++|+.|+++|++++++||+...... ..++.+ |+..- .+.++.+ .......+++. ...
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~-Gi~~~--~~~i~ts---------~~~~~~~l~~~-~~~ 80 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL-GIPVD--EDEIITS---------GMAAAEYLKEH-KGG 80 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT-TTT----GGGEEEH---------HHHHHHHHHHH-TTS
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc-CcCCC--cCEEECh---------HHHHHHHHHhc-CCC
Confidence 58999999999999999999999999854433 344454 66633 4666654 22333334432 234
Q ss_pred CCEEEEecCHhhHHHHHHcCC
Q 020871 256 KDCLVVEDSVIGLQAATRAGM 276 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~ 276 (320)
.+++++|-. ...+.++.+|+
T Consensus 81 ~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 81 KKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp SEEEEES-H-HHHHHHHHTTE
T ss_pred CEEEEEcCH-HHHHHHHHcCC
Confidence 667777765 55666666664
No 148
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.60 E-value=7.2e-08 Score=72.76 Aligned_cols=80 Identities=16% Similarity=0.285 Sum_probs=69.8
Q ss_pred HHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhh
Q 020871 188 MDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIG 267 (320)
Q Consensus 188 l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~D 267 (320)
++.|.+.|++++|+|+.+...++...+.+ |+.++ +.. .+.+...|..+++++++.+++|.||||..+|
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~L-GI~~~--~qG---------~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~D 111 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDL-GIKHL--YQG---------ISDKLAAFEELLKKLNLDPEEVAYVGDDLVD 111 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHc-CCcee--eec---------hHhHHHHHHHHHHHhCCCHHHhhhhcCcccc
Confidence 45678889999999999999999999997 98876 332 2345678999999999999999999999999
Q ss_pred HHHHHHcCCeEE
Q 020871 268 LQAATRAGMACV 279 (320)
Q Consensus 268 v~~a~~aG~~~v 279 (320)
+.....+|.+++
T Consensus 112 lpvm~~vGls~a 123 (170)
T COG1778 112 LPVMEKVGLSVA 123 (170)
T ss_pred HHHHHHcCCccc
Confidence 999999999865
No 149
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.53 E-value=1.9e-06 Score=73.84 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc----CCeEEEEeCCCCchhhccccceecccccccChhHHHH
Q 020871 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA----GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLEL 311 (320)
Q Consensus 236 ~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a----G~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 311 (320)
.+..+...+..+++++|+..+++++|||+.||..|.+.+ |.. |.+..+. ..+.+.+++ +.++..
T Consensus 171 ~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~-vavg~a~------~~A~~~l~~-----~~~v~~ 238 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGIS-VKVGTGA------TQASWRLAG-----VPDVWS 238 (266)
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeE-EEECCCC------CcCeEeCCC-----HHHHHH
Confidence 344667899999999999999999999999999999988 655 4443221 234444444 556666
Q ss_pred HHHHhh
Q 020871 312 LLQNVV 317 (320)
Q Consensus 312 ~l~~~~ 317 (320)
+|+.+.
T Consensus 239 ~L~~l~ 244 (266)
T PRK10187 239 WLEMIT 244 (266)
T ss_pred HHHHHH
Confidence 666554
No 150
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.52 E-value=1.8e-07 Score=77.95 Aligned_cols=91 Identities=22% Similarity=0.286 Sum_probs=56.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhh---HHHHHHHhhCCccccCcceEEe-CCCCCCCCC----CHHHHHHH
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLA-GDDVKQKKP----DPSIYVTA 247 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~---~~~~l~~~~~l~~~~~fd~v~~-~~~~~~~KP----~~~~~~~~ 247 (320)
......||+.++++.++++|++|+++||..... ...-|... |...+ +.++. .......+. +..-...+
T Consensus 112 ~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~-G~~~~---~~l~lr~~~~~~~~~~~~yK~~~r~~i 187 (229)
T PF03767_consen 112 GKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKA-GFPGW---DHLILRPDKDPSKKSAVEYKSERRKEI 187 (229)
T ss_dssp TGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHH-TTSTB---SCGEEEEESSTSS------SHHHHHHH
T ss_pred ccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHc-CCCcc---chhccccccccccccccccchHHHHHH
Confidence 334789999999999999999999999987553 33445554 76543 44433 222111111 22233333
Q ss_pred HHHcCCCCCCEEEEecCHhhHHHHHH
Q 020871 248 AKRLGISEKDCLVVEDSVIGLQAATR 273 (320)
Q Consensus 248 ~~~l~~~~~~~v~VGD~~~Dv~~a~~ 273 (320)
.++ |.. =+++|||..+|+..++.
T Consensus 188 ~~~-Gy~--Ii~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 188 EKK-GYR--IIANIGDQLSDFSGAKT 210 (229)
T ss_dssp HHT-TEE--EEEEEESSGGGCHCTHH
T ss_pred HHc-CCc--EEEEeCCCHHHhhcccc
Confidence 333 332 27899999999999443
No 151
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.52 E-value=2.6e-07 Score=92.00 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=80.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC----------------CCCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----------------KKPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----------------~KP~~~ 242 (320)
+++||+.+.++.|++.|+++.++|+.+........+++ |+... ++.++.+.+... ....|+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~-Gi~~~--~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~ 604 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRL-GMPSK--TSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPE 604 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCC--CCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHH
Confidence 67999999999999999999999999999999999887 98765 555655544322 235666
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
-...+++.+....+.+.|+||+.||+.+++.|++...+
T Consensus 605 ~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~ 642 (884)
T TIGR01522 605 HKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAM 642 (884)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEec
Confidence 66777777766668899999999999999999976544
No 152
>PLN02423 phosphomannomutase
Probab=98.50 E-value=4.6e-08 Score=82.74 Aligned_cols=48 Identities=4% Similarity=-0.172 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEec----CHhhHHHHHHcCCeEEEEeCCCC
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVED----SVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD----~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
+..+-.+..++..++ +++++++||| +.||++|.+.-|..++-|.++..
T Consensus 184 ~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~ 235 (245)
T PLN02423 184 FPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDD 235 (245)
T ss_pred eeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHH
Confidence 344555555655555 8999999999 79999999999999988866543
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.48 E-value=7.8e-07 Score=75.33 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
+..-.+.....++++++++++++++++|||.||+.|. ..+...|.|.+.
T Consensus 161 P~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 161 PKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp ETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred cCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 3444567799999999999999999999999999999 667777777553
No 154
>PTZ00174 phosphomannomutase; Provisional
Probab=98.46 E-value=2.1e-07 Score=79.00 Aligned_cols=46 Identities=4% Similarity=-0.162 Sum_probs=38.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEec----CHhhHHHHHHcCCeEEEEeC
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVED----SVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD----~~~Dv~~a~~aG~~~v~v~~ 283 (320)
+..+-.+...+..++++ +++++.||| +.||++|.+.+|..++.|.+
T Consensus 183 ~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 183 FPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred eeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 34556667788999888 599999999 89999999999888787763
No 155
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.43 E-value=5.4e-06 Score=69.57 Aligned_cols=104 Identities=17% Similarity=0.209 Sum_probs=61.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHH-HH---
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTA-AK--- 249 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~-~~--- 249 (320)
...+..|++.++.+.+++.|++|.++||.....-..-.+.+ .|...+ +.++-.......+.+.--|+.. .+
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~---~~LiLR~~~D~~~~~av~yKs~~R~~li 218 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW---EKLILKDPQDNSAENAVEYKTAARAKLI 218 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc---ceeeecCCCCCccchhHHHHHHHHHHHH
Confidence 44689999999999999999999999999864433333333 155433 5555443322222222222222 11
Q ss_pred HcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 250 RLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
+-|. .=+..|||..+|+.+....+-.+.-++++
T Consensus 219 ~eGY--rIv~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 219 QEGY--NIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred HcCc--eEEEEECCCHHhccCCCccCcceecCCCc
Confidence 2232 22578999999996655223455555554
No 156
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.43 E-value=3.9e-06 Score=65.79 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHH---HHHHHhh--CCccccCcceEEeCCC---------CCCCCC---CH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI---LCLENLI--GMERFEGLDCFLAGDD---------VKQKKP---DP 241 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~---~~l~~~~--~l~~~~~fd~v~~~~~---------~~~~KP---~~ 241 (320)
...|++.++++.++++|+++.++|+....... ..++.+. +.. + ....++++.. +-..+| +.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~-l-p~g~li~~~g~~~~~~~~e~i~~~~~~~K~ 104 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHN-L-PHGPVLLSPDRLFAALHREVISKKPEVFKI 104 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhcccc-C-CCceEEEcCCcchhhhhcccccCCHHHHHH
Confidence 36799999999999999999999999876553 4444420 111 1 0123443322 112333 23
Q ss_pred HHHHHHHHHcCCCC-CCEEEEecCHhhHHHHHHcCCe
Q 020871 242 SIYVTAAKRLGISE-KDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 242 ~~~~~~~~~l~~~~-~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+.+..+.+.+.-.- .=+..+||+.+|+++-+++|+.
T Consensus 105 ~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 105 ACLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 34444444443111 2234588889999999999996
No 157
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.42 E-value=2.9e-06 Score=82.93 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=79.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
+++||+.+.++.|++.|++++++|+.+......+.+++ |+..+ ++ ..+..| ..++++++ .+..|
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~l-gi~~~--~~------~~p~~K------~~~v~~l~-~~~~v 631 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGEL-GIDFR--AG------LLPEDK------VKAVTELN-QHAPL 631 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCee--cC------CCHHHH------HHHHHHHh-cCCCE
Confidence 78999999999999999999999999999999999887 88643 22 111122 22455555 34689
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
+||||+.||..+++.|++...+- .......+.++.++- ..++..|..++.
T Consensus 632 ~mvGDgiNDapAl~~A~vgia~g---~~~~~a~~~adivl~---~~~l~~l~~~i~ 681 (741)
T PRK11033 632 AMVGDGINDAPAMKAASIGIAMG---SGTDVALETADAALT---HNRLRGLAQMIE 681 (741)
T ss_pred EEEECCHHhHHHHHhCCeeEEec---CCCHHHHHhCCEEEe---cCCHHHHHHHHH
Confidence 99999999999999999776553 333333344554432 224555554443
No 158
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.39 E-value=7e-06 Score=63.38 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchhhHH---HHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVI---LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~---~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
-.-+++++.....+|-.|+.+|+..+...+ +.|+..+.+... .-.++.++. .||...--...++..++
T Consensus 116 KevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m--~pv~f~Gdk---~k~~qy~Kt~~i~~~~~---- 186 (237)
T COG3700 116 KEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNM--NPVIFAGDK---PKPGQYTKTQWIQDKNI---- 186 (237)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCC--cceeeccCC---CCcccccccHHHHhcCc----
Confidence 344577788888899999999988764443 344444566665 334455532 23332222345566565
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEeCC-CCchhhcccc
Q 020871 258 CLVVEDSVIGLQAATRAGMACVITYTS-STAEQDFKDA 294 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v~~~-~~~~~~l~~~ 294 (320)
-++.||+-+|+.+|+.+|...|-+.+. +.....++.+
T Consensus 187 ~IhYGDSD~Di~AAkeaG~RgIRilRAaNSTy~PlP~a 224 (237)
T COG3700 187 RIHYGDSDNDITAAKEAGARGIRILRAANSTYKPLPQA 224 (237)
T ss_pred eEEecCCchhhhHHHhcCccceeEEecCCccCCcCccc
Confidence 589999999999999999998866543 3333334433
No 159
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.32 E-value=2.5e-05 Score=62.97 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=79.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCC----ccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGM----ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l----~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
..|+++.+.++.-+..|++++|.|.+.......+...- ..+ ..| ||.- -..|-....|..+.+.+|
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gy--fDt~------iG~K~e~~sy~~I~~~Ig 194 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGY--FDTT------IGLKVESQSYKKIGHLIG 194 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhh--hhcc------ccceehhHHHHHHHHHhC
Confidence 68999999999999999999999999887554443332 011 122 3321 124667789999999999
Q ss_pred CCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 253 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.++.++++.-|...-..+|+.+|+.+..+.+|++.
T Consensus 195 ~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna 229 (254)
T KOG2630|consen 195 KSPREILFLTDVPREAAAARKAGLQAGLVSRPGNA 229 (254)
T ss_pred CChhheEEeccChHHHHHHHhcccceeeeecCCCC
Confidence 99999999999999999999999998887776654
No 160
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.17 E-value=9e-06 Score=81.46 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC--cceEEeCCCC----------------CCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG--LDCFLAGDDV----------------KQKKPD 240 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~--fd~v~~~~~~----------------~~~KP~ 240 (320)
+++||+.+.++.|++.|+++.++|+..........+++ |+..-.. .+..+.+.+. -..+-.
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~-gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~ 615 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRI-GIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE 615 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHc-CCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence 57999999999999999999999999988888888887 7753100 0112222111 112233
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
|+--..+++.++-..+.+.|+||+.||+.+.+.|++...+- . +.......++.++.+
T Consensus 616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~--g~~~ak~aAD~vl~d 672 (917)
T TIGR01116 616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-S--GTEVAKEASDMVLAD 672 (917)
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-C--CcHHHHHhcCeEEcc
Confidence 44446666777666678889999999999999999975542 2 222333456666655
No 161
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.16 E-value=1.5e-05 Score=76.42 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
++.|++.+.++.||+.|+++.++|+.++...+.+.+++ |++++ +-. -+|+ --...++++.-.-..+
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~l-GId~v--~Ae---------llPe--dK~~~V~~l~~~g~~V 602 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKEL-GIDEV--RAE---------LLPE--DKAEIVRELQAEGRKV 602 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-ChHhh--ecc---------CCcH--HHHHHHHHHHhcCCEE
Confidence 68999999999999999999999999999999999997 98766 222 2232 3355566665444679
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
.||||+.||..+...|.....+-. ..+-..+.++.++=+ .++..+...++
T Consensus 603 amVGDGINDAPALA~AdVGiAmG~---GtDvA~eaADvvL~~---~dL~~v~~ai~ 652 (713)
T COG2217 603 AMVGDGINDAPALAAADVGIAMGS---GTDVAIEAADVVLMR---DDLSAVPEAID 652 (713)
T ss_pred EEEeCCchhHHHHhhcCeeEeecC---CcHHHHHhCCEEEec---CCHHHHHHHHH
Confidence 999999999999999998866533 333333455543321 24444444443
No 162
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.16 E-value=1.4e-05 Score=76.40 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.+.||+.+.+++|++.|+++.++|+.+........+++ |++++ ++. ..| +--..+++.+.-....+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~l-GI~~v------~a~-----~~P--edK~~~v~~lq~~g~~V 511 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEA-GVDDF------IAE-----ATP--EDKIALIRQEQAEGKLV 511 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCEE------EcC-----CCH--HHHHHHHHHHHHcCCeE
Confidence 68899999999999999999999999999999888887 88654 221 222 33344444443334579
Q ss_pred EEEecCHhhHHHHHHcCCeEEEE
Q 020871 259 LVVEDSVIGLQAATRAGMACVIT 281 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v 281 (320)
.|+||+.||..+.+.|+...++-
T Consensus 512 amvGDG~NDapAL~~AdvGiAm~ 534 (675)
T TIGR01497 512 AMTGDGTNDAPALAQADVGVAMN 534 (675)
T ss_pred EEECCCcchHHHHHhCCEeEEeC
Confidence 99999999999999999987663
No 163
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.12 E-value=1.3e-05 Score=72.91 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=73.0
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhC--------CccccCcceEEeCCC----------------
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG--------MERFEGLDCFLAGDD---------------- 233 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~--------l~~~~~fd~v~~~~~---------------- 233 (320)
+...|.+..+|+.||++|.++.++||+.-..+...+..+.| +..+ ||.|++...
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dl--FDvVIv~A~KP~FF~~~~pfr~vd~ 259 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDL--FDVVIVDARKPGFFTEGRPFREVDT 259 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGC--ECEEEES--CCHHHCT---EEEEET
T ss_pred ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhh--eeEEEEcCCCCcccCCCCceEEEEC
Confidence 44568999999999999999999999999999999888754 3455 999887522
Q ss_pred -CCCCCCCH-------------HHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHHc-CCeEEEEeCC
Q 020871 234 -VKQKKPDP-------------SIYVTAAKRLGISEKDCLVVEDSV-IGLQAATRA-GMACVITYTS 284 (320)
Q Consensus 234 -~~~~KP~~-------------~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~a-G~~~v~v~~~ 284 (320)
.+..+... -....+++.+|...++|+||||+. .|+...+.. ||.+++|-..
T Consensus 260 ~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~E 326 (448)
T PF05761_consen 260 ETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPE 326 (448)
T ss_dssp TTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TT
T ss_pred CCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEehh
Confidence 11111111 126677888899999999999999 699988887 9999988443
No 164
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.07 E-value=3.4e-05 Score=73.86 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=77.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
++.||+.+.+++||+.|+++.++|+.+......+.+++ |++++ |. .- .|+--..+.+.+.-.-+.+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GI~~v--~A---------~~--~PedK~~iV~~lQ~~G~~V 506 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEA-GVDRF--VA---------EC--KPEDKINVIREEQAKGHIV 506 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCceE--Ec---------CC--CHHHHHHHHHHHHhCCCEE
Confidence 68899999999999999999999999999999888887 88754 22 12 2344455666665444568
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceec
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY 298 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~ 298 (320)
.|+||+.||..+.+.|.+...+- + ...-..+.++.+.
T Consensus 507 aMtGDGvNDAPALa~ADVGIAMg-s--GTdvAkeAADiVL 543 (673)
T PRK14010 507 AMTGDGTNDAPALAEANVGLAMN-S--GTMSAKEAANLID 543 (673)
T ss_pred EEECCChhhHHHHHhCCEEEEeC-C--CCHHHHHhCCEEE
Confidence 89999999999999999886664 3 2333334556554
No 165
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.07 E-value=2.9e-05 Score=74.48 Aligned_cols=116 Identities=13% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.+.||+.+.+++||+.|+++.++|+.+......+.+++ |++++ ++. . .|+--..+.+.+.-.-+-+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~el-GId~v------~A~-----~--~PedK~~iV~~lQ~~G~~V 510 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GVDDF------LAE-----A--TPEDKLALIRQEQAEGRLV 510 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCcEE------Ecc-----C--CHHHHHHHHHHHHHcCCeE
Confidence 46899999999999999999999999999999888887 88654 221 1 2334455555555444568
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHH
Q 020871 259 LVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQ 314 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~ 314 (320)
.|+||+.||..+.+.|.....+- +| ..-..+.++.+.-| -++..+.+.++
T Consensus 511 aMtGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVLld---d~~s~Iv~av~ 560 (679)
T PRK01122 511 AMTGDGTNDAPALAQADVGVAMN-SG--TQAAKEAGNMVDLD---SNPTKLIEVVE 560 (679)
T ss_pred EEECCCcchHHHHHhCCEeEEeC-CC--CHHHHHhCCEEEeC---CCHHHHHHHHH
Confidence 99999999999999999887664 33 22333455555432 23444444443
No 166
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.02 E-value=8.1e-05 Score=62.98 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEE------------eC---CC--------
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFL------------AG---DD-------- 233 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~------------~~---~~-------- 233 (320)
..-+++.++++.|++.|+++..+|..........++.+ .|++ |+... .. ..
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~----fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIl 156 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGID----FSSSSFPEDGIISFPVFDSALSRAPSFYDGIL 156 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC----ccccccccCcceecccccCCCCCCceeecCeE
Confidence 46789999999999999999999998866555555544 2554 22111 00 00
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHH----HHcCCeEEEEeCCC
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAA----TRAGMACVITYTSS 285 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a----~~aG~~~v~v~~~~ 285 (320)
+..+-++.+++..++.+.|..|+.+|||+|+..++... +..|+...++....
T Consensus 157 ft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 157 FTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred EeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcc
Confidence 12345667899999999999999999999999766544 44688877765443
No 167
>PLN02645 phosphoglycolate phosphatase
Probab=97.94 E-value=7.6e-05 Score=65.54 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHH---HHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL---ENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l---~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
.++||+.++|+.|+++|++++++||+........+ +.+ |+... ++.++++.. .....++..+...
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~l-Gi~~~--~~~I~ts~~---------~~~~~l~~~~~~~ 111 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESL-GLNVT--EEEIFSSSF---------AAAAYLKSINFPK 111 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHC-CCCCC--hhhEeehHH---------HHHHHHHhhccCC
Confidence 57899999999999999999999999854444444 454 77654 677766522 4455556656555
Q ss_pred CCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 256 KDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
.+.++|+++..+.+.++.+|+.++.
T Consensus 112 ~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 112 DKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CCEEEEEcCHHHHHHHHHCCCEEec
Confidence 5678899999999999999998764
No 168
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.89 E-value=0.00015 Score=71.19 Aligned_cols=71 Identities=8% Similarity=0.007 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHH
Q 020871 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQN 315 (320)
Q Consensus 236 ~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 315 (320)
.+-.+......+++ +++++.+++|||+.||..|.+.++..+..+.-+... ..+.+.+++ .+++.++|+.
T Consensus 654 ~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~----s~A~~~l~~-----~~eV~~~L~~ 722 (726)
T PRK14501 654 AGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPGE----SRARYRLPS-----QREVRELLRR 722 (726)
T ss_pred CCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECCCC----CcceEeCCC-----HHHHHHHHHH
Confidence 34456678888887 778899999999999999999974222222223221 355666665 3556677766
Q ss_pred hh
Q 020871 316 VV 317 (320)
Q Consensus 316 ~~ 317 (320)
+.
T Consensus 723 l~ 724 (726)
T PRK14501 723 LL 724 (726)
T ss_pred Hh
Confidence 54
No 169
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.88 E-value=6.4e-05 Score=58.76 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=62.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc-cccCc-ceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME-RFEGL-DCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~-~~~~f-d~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
+.++||+.++|+.|++. ++++|+|++.+..+..+++.+ +.. .+ | +.+++.++.. .+. .+.+-..++.+.
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l-dp~~~~--F~~ri~~rd~~~--~~~---~KdL~~i~~~d~ 127 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI-DPDGKY--FGDRIISRDESG--SPH---TKSLLRLFPADE 127 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh-CcCCCe--eccEEEEeccCC--CCc---cccHHHHcCCCc
Confidence 57899999999999966 999999999999999999997 776 46 7 5667766543 111 111223457788
Q ss_pred CCEEEEecCHhhH
Q 020871 256 KDCLVVEDSVIGL 268 (320)
Q Consensus 256 ~~~v~VGD~~~Dv 268 (320)
+.+++|+|++.-.
T Consensus 128 ~~vvivDd~~~~~ 140 (156)
T TIGR02250 128 SMVVIIDDREDVW 140 (156)
T ss_pred ccEEEEeCCHHHh
Confidence 9999999999533
No 170
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.84 E-value=0.0015 Score=60.67 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCc------ceEEeCCCCCCCCC-C-HHHHHHHHHHc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL------DCFLAGDDVKQKKP-D-PSIYVTAAKRL 251 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~f------d~v~~~~~~~~~KP-~-~~~~~~~~~~l 251 (320)
++|.+.+. ++++|.. +++|.+.+..++...++.+|++..-+- +..+++.-.+. .+ . .+-...+.+.+
T Consensus 111 l~~~a~~~---~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~-~~c~Ge~Kv~rl~~~~ 185 (497)
T PLN02177 111 VHPETWRV---FNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKP-GVLVGDHKRDAVLKEF 185 (497)
T ss_pred cCHHHHHH---HHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCC-CCCccHHHHHHHHHHh
Confidence 66766654 4567754 999999999999888763366533111 12222211110 01 1 11122333456
Q ss_pred CCCCCCEEEEecCHhhHHHHHHcCCeEE
Q 020871 252 GISEKDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 252 ~~~~~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
|.+... +..||+.+|..+...++-..+
T Consensus 186 g~~~~~-~aYgDS~sD~plL~~a~e~y~ 212 (497)
T PLN02177 186 GDALPD-LGLGDRETDHDFMSICKEGYM 212 (497)
T ss_pred CCCCce-EEEECCccHHHHHHhCCccEE
Confidence 654444 899999999999999998754
No 171
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.82 E-value=8.1e-05 Score=74.30 Aligned_cols=114 Identities=14% Similarity=0.160 Sum_probs=80.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC----------------CCCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----------------KKPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----------------~KP~~~ 242 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+.. +.++.+.+... .+-.|+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~----~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe 624 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEV-GLDA----GEVLIGSDIETLSDDELANLAERTTLFARLTPM 624 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCc----cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHH
Confidence 57899999999999999999999999999899888887 8852 33444433211 122344
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
--..+.+.+.-.-.-+.|+||+.||..+.+.|.+...+- ++ ..-..+.++.++-|
T Consensus 625 ~K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVLld 679 (902)
T PRK10517 625 HKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GA--VDIAREAADIILLE 679 (902)
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-Cc--CHHHHHhCCEEEec
Confidence 445555555444456889999999999999999886653 32 22333456655533
No 172
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=97.82 E-value=9.8e-05 Score=74.41 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=78.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCC----------------CCCCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------QKKPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------~~KP~~~ 242 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+..- -..++.+.+.. ...=.|+
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~-GI~~~--~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe 655 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNC-GILTF--GGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPL 655 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCCC--CceEeeHHHhhhCCHHHHHHHhccCeEEEECCHH
Confidence 67899999999999999999999999999898888887 88532 12333332211 0122333
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
--..+.+.+.-.-+.+.|+||+.||..+.+.|.+...+-..+ ..-....++.++.|
T Consensus 656 ~K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~g--tdvAk~aADivL~d 711 (941)
T TIGR01517 656 DKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISG--TEVAKEASDIILLD 711 (941)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCc--cHHHHHhCCEEEec
Confidence 444455555433456899999999999999999886652122 22233456666553
No 173
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.78 E-value=0.00014 Score=72.49 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=77.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC----------------CCCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----------------KKPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----------------~KP~~~ 242 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+.. +.++.+.+... ..-.|+
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~l-GI~~----~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe 589 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEV-GIDA----NDFLLGADIEELSDEELARELRKYHIFARLTPM 589 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCC----CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHH
Confidence 57899999999999999999999999999888888887 8852 22333322210 112233
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecc
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYP 299 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~ 299 (320)
--..+.+.+.-.-+.+.|+||+.||..+.+.|.+...+- ++ ..-..+.++.++-
T Consensus 590 ~K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~g--tdvAk~aADiVLl 643 (867)
T TIGR01524 590 QKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TA--ADIAKEASDIILL 643 (867)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-Cc--cHHHHHhCCEEEe
Confidence 334444444433456889999999999999999987653 32 2222345555543
No 174
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.76 E-value=0.00036 Score=62.53 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC----CCCCCCCHHHHHHHHHHcCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----VKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----~~~~KP~~~~~~~~~~~l~~~ 254 (320)
.+|....+.+..|++.|+-++|+|-++...+....+.++ +.++--++ .-.+-|+.+.++.++++||+-
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp--------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg 326 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP--------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLG 326 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC--------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCC
Confidence 455666778889999999999999998888888877652 22332222 124679999999999999999
Q ss_pred CCCEEEEecCHhhHHHHHHcCC
Q 020871 255 EKDCLVVEDSVIGLQAATRAGM 276 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~ 276 (320)
.+..+|++|++...+-.++-+-
T Consensus 327 ~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 327 LDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred ccceEEecCCHHHHHHHHhcCc
Confidence 9999999999998888888775
No 175
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00062 Score=52.27 Aligned_cols=95 Identities=18% Similarity=0.141 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.+..++...|..++++ .+++.+|.......+.--..+ ..... .+|.+..-+- ..| -.+++.++++
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l-~~q~i-h~~~l~i~g~--h~K------V~~vrth~id---- 136 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWL-FIQNI-HYDHLEIVGL--HHK------VEAVRTHNID---- 136 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHH-HHhcc-chhhhhhhcc--ccc------chhhHhhccC----
Confidence 4667888888889888 678888877665443332222 22211 1343322111 122 3467777875
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEeCCCCch
Q 020871 259 LVVEDSV-IGLQAATRAGMACVITYTSSTAE 288 (320)
Q Consensus 259 v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~~ 288 (320)
+++.|+. |=++.|+++|++++.+++++++.
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ynRk 167 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYNRK 167 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence 7899999 67788888999999999998774
No 176
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.75 E-value=0.00016 Score=72.33 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=78.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC----------------CCCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ----------------KKPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~----------------~KP~~~ 242 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+.. +.++.+.+... ..-.|+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~l-GI~~----~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe 624 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREV-GLEP----GEPLLGTEIEAMDDAALAREVEERTVFAKLTPL 624 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCC----CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHH
Confidence 67899999999999999999999999999888888887 8852 23343333211 122344
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceec
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY 298 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~ 298 (320)
--..+.+.+.-.-+-+.|+||+.||..+.+.|.+...+- ++ ..-..+.++.++
T Consensus 625 ~K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVL 677 (903)
T PRK15122 625 QKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SG--ADIAKESADIIL 677 (903)
T ss_pred HHHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cc--cHHHHHhcCEEE
Confidence 445555555544456889999999999999999886653 32 222334556554
No 177
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.73 E-value=0.00015 Score=71.29 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCC----------------------C
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK----------------------Q 236 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~----------------------~ 236 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+..- ++.++++. .
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~l-GI~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRL-GLGTN-----IYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCC-----CcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 68899999999999999999999999999999888887 88531 11111110 1
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceec
Q 020871 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY 298 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~ 298 (320)
.+=.|+--..+.+.+.-.-+.+.|+||+.||..+.+.|.+...+- ++ ..-..+.++.++
T Consensus 516 Ar~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~-~g--tdvAkeaADivL 574 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA-GA--TDAARSAADIVL 574 (755)
T ss_pred EecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec-CC--cHHHHHhCCEEE
Confidence 112333444455555444467899999999999999999886653 32 222334455544
No 178
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=97.72 E-value=0.00047 Score=56.31 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhh-HH---HHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSS-VI---LCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~-~~---~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
...+.||+.++++..-++|..|..+||...+. .. .-|.+. |+..... +.++-- ...|++..-+..+.+.+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~-g~~~~~~-~~~llk---k~~k~Ke~R~~~v~k~~- 193 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSE-GLPQVLE-SHLLLK---KDKKSKEVRRQAVEKDY- 193 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHc-Ccccccc-cceEEe---eCCCcHHHHHHHHhhcc-
Confidence 35899999999999999999999999998765 33 334443 6655411 122211 23455555555555533
Q ss_pred CCCCCEEEEecCHhhHHHH
Q 020871 253 ISEKDCLVVEDSVIGLQAA 271 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a 271 (320)
+-++.|||+..|+...
T Consensus 194 ---~iVm~vGDNl~DF~d~ 209 (274)
T COG2503 194 ---KIVMLVGDNLDDFGDN 209 (274)
T ss_pred ---ceeeEecCchhhhcch
Confidence 4589999999887544
No 179
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.69 E-value=0.0005 Score=51.38 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhh
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS 208 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~ 208 (320)
.+.+++.+.|+.|++.|+.++++|+.....
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 477889999999999999999999887553
No 180
>PLN02580 trehalose-phosphatase
Probab=97.69 E-value=0.00097 Score=59.54 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCC---EEEEecCHhhHHHHHH-----cCCeEEEEeCCCCchhhccccceecccccccChhH
Q 020871 237 KKPDPSIYVTAAKRLGISEKD---CLVVEDSVIGLQAATR-----AGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKD 308 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~~~~---~v~VGD~~~Dv~~a~~-----aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~ 308 (320)
+-.+......+++++|+...+ .++|||+.+|..|.+. .|+.+ .|..+... ..+.+.++ ++.+
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I-~Vgn~~~~----t~A~y~L~-----dp~e 368 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGI-LVSSVPKE----SNAFYSLR-----DPSE 368 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEE-EEecCCCC----ccceEEcC-----CHHH
Confidence 345677899999999987653 3899999999999986 35553 34322111 13333333 4667
Q ss_pred HHHHHHHhh
Q 020871 309 LELLLQNVV 317 (320)
Q Consensus 309 l~~~l~~~~ 317 (320)
+.++|+.+.
T Consensus 369 V~~~L~~L~ 377 (384)
T PLN02580 369 VMEFLKSLV 377 (384)
T ss_pred HHHHHHHHH
Confidence 777777654
No 181
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.68 E-value=0.00043 Score=53.54 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=57.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC---c-cccCcc-eEEeC---------CCCCCCCCCHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM---E-RFEGLD-CFLAG---------DDVKQKKPDPSIY 244 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l---~-~~~~fd-~v~~~---------~~~~~~KP~~~~~ 244 (320)
...+|+.++.+.++++||++..+|.............+... + .+ .+ .++.+ .|+- .++|+.|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~l--P~Gpv~~sP~~l~~al~rEvi--~~~p~~f 102 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNL--PDGPVLLSPDSLFSALHREVI--SKDPEEF 102 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccC--CCCCEEECCcchhhhhhcccc--ccChHHH
Confidence 37789999999999999999999998754333222222111 1 12 22 23333 1222 2345455
Q ss_pred HHHH-HHc-CC----CCCCEEEEecCHhhHHHHHHcCCe
Q 020871 245 VTAA-KRL-GI----SEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 245 ~~~~-~~l-~~----~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+..+ +.+ .. ...=...+|++.+|+.+-+++|+.
T Consensus 103 K~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 103 KIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 4433 332 11 222345699999999999999996
No 182
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.60 E-value=0.00032 Score=71.22 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC--------cceEEeCCCCCC--------------
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG--------LDCFLAGDDVKQ-------------- 236 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~--------fd~v~~~~~~~~-------------- 236 (320)
++.|++.+.++.|++.|+++.++|+........+.+++ |+..-.. -..++.+.+...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~-Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~ 724 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEV-GIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCL 724 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCe
Confidence 68899999999999999999999999999898888887 8742100 013444433211
Q ss_pred --CCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 237 --KKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 237 --~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
..=.|+--..+.+.+.-.-+.+.|+||+.||..+.+.|.+...+-..+. .-....++.++.+
T Consensus 725 V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt--~vak~aADivl~d 788 (1053)
T TIGR01523 725 VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGS--DVAKDASDIVLSD 788 (1053)
T ss_pred EEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCcc--HHHHHhcCEEEec
Confidence 1223334444555554444668899999999999999998866522222 1223355655544
No 183
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.54 E-value=0.0038 Score=61.94 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHH---HcCCCCCCEEEEecCHhhHHHHHHcC
Q 020871 237 KKPDPSIYVTAAK---RLGISEKDCLVVEDSVIGLQAATRAG 275 (320)
Q Consensus 237 ~KP~~~~~~~~~~---~l~~~~~~~v~VGD~~~Dv~~a~~aG 275 (320)
+-.+......+++ .+|..++++++|||+.||..|.+.++
T Consensus 760 gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 760 GVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 3445667777764 46899999999999999999999886
No 184
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.42 E-value=0.00072 Score=56.80 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGD 232 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~ 232 (320)
..|.+.+.|.+|++.|--+++=|-|+++++...++.+ ++..+ ||.++++.
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~-~L~~~--Fd~ii~~G 192 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL-KLEGY--FDIIICGG 192 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh-CCccc--cEEEEeCC
Confidence 4577888899999999999999999999999999997 99999 99999863
No 185
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.001 Score=64.24 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
++.||+...+..||+.|++++++|+.+........+++ |+ +.|++. -+|. --....+++.-....+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~V-Gi------~~V~ae-----v~P~--~K~~~Ik~lq~~~~~V 788 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQV-GI------DNVYAE-----VLPE--QKAEKIKEIQKNGGPV 788 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhh-Cc------ceEEec-----cCch--hhHHHHHHHHhcCCcE
Confidence 68899999999999999999999999999888888887 63 445432 2332 2233444444444679
Q ss_pred EEEecCHhhHHHHHHcCCeEEE
Q 020871 259 LVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
.||||+.||-.+...|.+...+
T Consensus 789 aMVGDGINDaPALA~AdVGIai 810 (951)
T KOG0207|consen 789 AMVGDGINDAPALAQADVGIAI 810 (951)
T ss_pred EEEeCCCCccHHHHhhccceee
Confidence 9999999999999998877544
No 186
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00071 Score=67.91 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=73.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCc--ceEEeCCCCCC----------------CCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL--DCFLAGDDVKQ----------------KKPD 240 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~f--d~v~~~~~~~~----------------~KP~ 240 (320)
++.+++.++++.|+++|+++.++|+........+.+++ |+..- - +.++.+.+... .+=.
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~-Gi~~~--~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs 623 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKEC-GIEAE--AESALVIDGAELDALSDEELAELVEELSVFARVS 623 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHc-CCCCC--CCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence 68899999999999999999999999999898888887 86643 2 23555544221 1122
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEe
Q 020871 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITY 282 (320)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~ 282 (320)
|+--..+.+.+.-.-.-+.|.||+.||+.|.+.|.++..+..
T Consensus 624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~ 665 (917)
T COG0474 624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGG 665 (917)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecc
Confidence 333333444444334568899999999999999999876654
No 187
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.0011 Score=63.32 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=80.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc----eEEeCCCCCC----------------CC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD----CFLAGDDVKQ----------------KK 238 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd----~v~~~~~~~~----------------~K 238 (320)
+++|++.+.++.+++.|+++..+|+.+......+.+++ |+-.. -+ ..+++.++.. .+
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~i-Gi~~~--~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR 660 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREI-GIFSE--DEDVSSMALTGSEFDDLSDEELDDAVRRVLVFAR 660 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHh-CCCcC--CccccccccchhhhhcCCHHHHHHHhhcceEEEe
Confidence 68999999999999999999999999999888888887 76544 22 2344433211 01
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceeccc
Q 020871 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPD 300 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~ 300 (320)
-.|+--..+.+.|+-.-+=+-|-||+.||..+.+.|.+..+|--.|.. -..+.++.+..|
T Consensus 661 ~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~GTd--VaKeAsDMVL~D 720 (972)
T KOG0202|consen 661 AEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGISGTD--VAKEASDMVLAD 720 (972)
T ss_pred cCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCCccH--hhHhhhhcEEec
Confidence 123334455555554446688999999999999999998877533322 233455655544
No 188
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.32 E-value=0.0013 Score=58.52 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.....++.+.+.++|.++.++|.-. ...++..|... |.+.. --.++.|.+....|.....|..+++.-+++|.+.
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~-g~d~~--nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w 177 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSF-GPDFN--NIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKW 177 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhc-CCCcc--CceeeecceeehhcccchHHHHHHhhcCCChhhe
Confidence 3456899999999999999999875 34455555554 65543 2347888888889999999999999999999999
Q ss_pred EEEecCHh-hHHHHHHcCCeEEEE
Q 020871 259 LVVEDSVI-GLQAATRAGMACVIT 281 (320)
Q Consensus 259 v~VGD~~~-Dv~~a~~aG~~~v~v 281 (320)
+++||+.+ |..++++.|+.+...
T Consensus 178 ~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 178 IHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred EEecCchhhhhcCccccchhHHHH
Confidence 99999995 999999999988654
No 189
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.27 E-value=0.0026 Score=59.85 Aligned_cols=85 Identities=16% Similarity=0.210 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.+.+++.+.++.|++.|+++.++|+..........+.+ |+ + ..-.|+.-..+.+.+.-....+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~l-gi--~--------------~~~~p~~K~~~v~~l~~~g~~v 409 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKEL-GI--F--------------ARVTPEEKAALVEALQKKGRVV 409 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-Cc--e--------------eccCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999998888887776 65 1 1123334445555543333679
Q ss_pred EEEecCHhhHHHHHHcCCeEEE
Q 020871 259 LVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 259 v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
.||||+.||..+.+.|+....+
T Consensus 410 ~~vGDg~nD~~al~~Advgia~ 431 (499)
T TIGR01494 410 AMTGDGVNDAPALKKADVGIAM 431 (499)
T ss_pred EEECCChhhHHHHHhCCCcccc
Confidence 9999999999999999877444
No 190
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.21 E-value=0.004 Score=47.13 Aligned_cols=99 Identities=26% Similarity=0.278 Sum_probs=62.3
Q ss_pred CCChhHHHHHHHHHHC-C-CcEEEEeCCch-------hhHHHHHHHhhCCccccCcceEEeCCCCCCCCCC--HHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAA-G-KKVAVCSAATK-------SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPD--PSIYVTA 247 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~-g-~~i~i~Tn~~~-------~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~--~~~~~~~ 247 (320)
.+.|.-..-+++++.. | ..++++||+.. ....+.++...|+.-. ...+ .||. .+.+.+.
T Consensus 61 ~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVl--------RHs~--kKP~ct~E~~~y~ 130 (190)
T KOG2961|consen 61 AIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVL--------RHSV--KKPACTAEEVEYH 130 (190)
T ss_pred ccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceE--------eecc--cCCCccHHHHHHH
Confidence 4566666666666664 3 67889998742 1233344443355432 1222 3443 3444443
Q ss_pred HHHcC-CCCCCEEEEecCH-hhHHHHHHcCCeEEEEeCCCCc
Q 020871 248 AKRLG-ISEKDCLVVEDSV-IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 248 ~~~l~-~~~~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
...-. .+++|++||||+. .|+.+|...|-.+||...+...
T Consensus 131 ~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~ 172 (190)
T KOG2961|consen 131 FGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRA 172 (190)
T ss_pred hCCcccCChhHeEEEccchhhhHhhhhhccceeEEecccccc
Confidence 32222 5789999999999 7999999999999999887654
No 191
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=97.17 E-value=0.027 Score=49.21 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=50.4
Q ss_pred hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 217 IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
+||+.++..+.|+++-.+++ -..|+++.+++|- .-.-++|||+...-.+|++..|+++-++..
T Consensus 391 ~gLg~~fpiENIYSa~kiGK----escFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~~h 453 (468)
T KOG3107|consen 391 YGLGSSFPIENIYSATKIGK----ESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRISSH 453 (468)
T ss_pred HhcCCcccchhhhhhhhccH----HHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeeccC
Confidence 58888877788887766553 4599999999997 455678999999999999999998766543
No 192
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.16 E-value=0.0017 Score=65.92 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccC----------------------cceEEeCCCCC-
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEG----------------------LDCFLAGDDVK- 235 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~----------------------fd~v~~~~~~~- 235 (320)
++.|++.+.++.+++.|+++.++|+..........+++ |+-.-.. -..++.+.+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~-gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~ 646 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV-GIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD 646 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence 57899999999999999999999999999888888887 7631100 01244443221
Q ss_pred -----------------CCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceec
Q 020871 236 -----------------QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIY 298 (320)
Q Consensus 236 -----------------~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~ 298 (320)
..+-.|+--..+.+.+.-.-.-|.|+||+.||+.+.+.|.+...+-..|.. -....++.++
T Consensus 647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~--vak~aADivL 724 (997)
T TIGR01106 647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSD--VSKQAADMIL 724 (997)
T ss_pred CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccH--HHHHhhceEE
Confidence 122233333444444443335688999999999999999988765323221 1233456655
Q ss_pred cc
Q 020871 299 PD 300 (320)
Q Consensus 299 ~~ 300 (320)
.|
T Consensus 725 ~d 726 (997)
T TIGR01106 725 LD 726 (997)
T ss_pred ec
Confidence 44
No 193
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0016 Score=55.96 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhC--CccccCcceEEeCCCC-----CCCCCCHH---------
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG--MERFEGLDCFLAGDDV-----KQKKPDPS--------- 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~--l~~~~~fd~v~~~~~~-----~~~KP~~~--------- 242 (320)
.-.|....+|+.|+++|.++.++||++...++.-...+-| +.++ ||.|+.-.+- ...+|=..
T Consensus 240 ~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdl--FDVVIvqA~KP~Fftde~rPfR~~dek~~sl~ 317 (510)
T KOG2470|consen 240 ERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDL--FDVVIVQANKPEFFTDERRPFRKYDEKRGSLL 317 (510)
T ss_pred hccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhh--hheeEEecCCCcccccccCcchhhcccccchh
Confidence 4567888999999999999999999999888765554433 3455 8877763221 11112110
Q ss_pred ----------------HHHHHHHHcCCCCCCEEEEecCH-hhHHHHH-HcCCeEEEE
Q 020871 243 ----------------IYVTAAKRLGISEKDCLVVEDSV-IGLQAAT-RAGMACVIT 281 (320)
Q Consensus 243 ----------------~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~-~aG~~~v~v 281 (320)
.+...++.-|..-.+++++||+. +|+.... ..||.+..+
T Consensus 318 wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAI 374 (510)
T KOG2470|consen 318 WDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAI 374 (510)
T ss_pred hhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccc
Confidence 13345555678888999999999 7999888 899986544
No 194
>PLN03017 trehalose-phosphatase
Probab=97.02 E-value=0.014 Score=51.84 Aligned_cols=70 Identities=11% Similarity=-0.027 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHcCCCC---CCEEEEecCHhhHHHHHHcC----CeEEEEeCCCCchhhccccceecccccccChhHHHH
Q 020871 239 PDPSIYVTAAKRLGISE---KDCLVVEDSVIGLQAATRAG----MACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLEL 311 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~---~~~v~VGD~~~Dv~~a~~aG----~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 311 (320)
.+....+.+++.++... .-.+|+||...|-.+.+.+. .-+|.|..... -..|.+.++ ++.++.+
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~~k----~T~A~y~L~-----dp~eV~~ 353 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKFPK----DTDASYSLQ-----DPSEVMD 353 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCCCC----CCcceEeCC-----CHHHHHH
Confidence 45678899999988643 35899999999877777652 22455532111 123444444 4667777
Q ss_pred HHHHhh
Q 020871 312 LLQNVV 317 (320)
Q Consensus 312 ~l~~~~ 317 (320)
+|+.+.
T Consensus 354 fL~~L~ 359 (366)
T PLN03017 354 FLARLV 359 (366)
T ss_pred HHHHHH
Confidence 777664
No 195
>PLN02151 trehalose-phosphatase
Probab=96.92 E-value=0.019 Score=50.78 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHcCCCCC---CEEEEecCHhhHHHHHHc-----CCeEEEEeCCCCchhhccccceecccccccChhHHH
Q 020871 239 PDPSIYVTAAKRLGISEK---DCLVVEDSVIGLQAATRA-----GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLE 310 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~~---~~v~VGD~~~Dv~~a~~a-----G~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 310 (320)
.+......+++.++..-. -.+|+||...|-.+.+.. |+ .|.|..+... ..|.+.++ ++.++.
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~-gI~Vg~~~k~----T~A~y~L~-----dp~eV~ 338 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGL-GILVSKYAKE----TNASYSLQ-----EPDEVM 338 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCc-cEEeccCCCC----CcceEeCC-----CHHHHH
Confidence 456688899998875432 279999999987777654 32 3444321110 13334433 467777
Q ss_pred HHHHHhhh
Q 020871 311 LLLQNVVA 318 (320)
Q Consensus 311 ~~l~~~~~ 318 (320)
++|+.+..
T Consensus 339 ~~L~~L~~ 346 (354)
T PLN02151 339 EFLERLVE 346 (354)
T ss_pred HHHHHHHH
Confidence 77776653
No 196
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.89 E-value=0.02 Score=46.33 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCc--ceEEeCCC--------CC--CCCCCHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGL--DCFLAGDD--------VK--QKKPDPSIYVT 246 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~f--d~v~~~~~--------~~--~~KP~~~~~~~ 246 (320)
...|++.++|+.+.+. +.++|.|.+....++.++..+ ++..-..+ ..+..++. .+ ..|+ +..
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l-~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTEL-GVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHh-cccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 5789999999999995 999999999999999999886 54221001 11221111 11 1233 223
Q ss_pred HHHHcC--CCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 247 AAKRLG--ISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 247 ~~~~l~--~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+-++++ .+.+++|+|+|++....+--..|+.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~ 151 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK 151 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc
Confidence 333554 3778999999999765554445544
No 197
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.85 E-value=0.027 Score=48.65 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHH---HHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL---CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~---~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
.++||+.++|++|+++|++++++||+....... .++.+ |+..- .+.++++ .......+++.....
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~-G~~~~--~~~i~ts---------~~~~~~~l~~~~~~~ 85 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARL-GFNGL--AEQLFSS---------ALCAARLLRQPPDAP 85 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCC--hhhEecH---------HHHHHHHHHhhCcCC
Confidence 589999999999999999999999976443333 44444 66432 3444443 223344555544445
Q ss_pred CCEEEEecCHhhHHHHHHcCCeEE
Q 020871 256 KDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
.+++++|+.. ....++..|+..+
T Consensus 86 ~~v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 86 KAVYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred CEEEEEcCHH-HHHHHHHCCCEEe
Confidence 6799999864 3455677888754
No 198
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.78 E-value=0.0054 Score=49.57 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=23.7
Q ss_pred CCccEEEEecCCccccc-h-HHHHHHHHHHHHhcccCCCC
Q 020871 65 QSLQALIFDCDGVIIES-E-HLHRQAYNDAFSHFNVRCDP 102 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~-~-~~~~~~~~~~~~~~g~~~~~ 102 (320)
.++.+|+.|+||||++. . .....-|..-+.+.|.+...
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~Vi~ 44 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPVIL 44 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeEEE
Confidence 36888999999999982 1 12223333444566766544
No 199
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.74 E-value=0.005 Score=63.14 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l 219 (320)
++.+|+.+.++.|++.|++++++|+...+.+..+.+.. |+
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~-~i 670 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSC-RL 670 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHh-CC
Confidence 68899999999999999999999999888787777665 54
No 200
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0031 Score=57.27 Aligned_cols=90 Identities=12% Similarity=0.213 Sum_probs=71.2
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 259 (320)
.-||++|-+.+||+.|++.+.||+.++-....+.++. |+++| . ...||. --..++++.+-.-.=+-
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EA-GVDdf--i---------AeatPE--dK~~~I~~eQ~~grlVA 513 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEA-GVDDF--I---------AEATPE--DKLALIRQEQAEGRLVA 513 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHh-Cchhh--h---------hcCChH--HHHHHHHHHHhcCcEEE
Confidence 5689999999999999999999999998888888886 98876 2 224554 33455555555556678
Q ss_pred EEecCHhhHHHHHHcCCeEEEEeC
Q 020871 260 VVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 260 ~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
|.||+.||..+...|....+|..+
T Consensus 514 MtGDGTNDAPALAqAdVg~AMNsG 537 (681)
T COG2216 514 MTGDGTNDAPALAQADVGVAMNSG 537 (681)
T ss_pred EcCCCCCcchhhhhcchhhhhccc
Confidence 999999999999999988766543
No 201
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.71 E-value=0.0044 Score=63.68 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN 215 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~ 215 (320)
++.+|+.+.++.|++.|+++.++|+........+...
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD~~~tAi~IA~s 762 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYS 762 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
Confidence 6899999999999999999999999887666555443
No 202
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=96.70 E-value=0.016 Score=59.43 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=37.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
++.|++.+.++.|++.|+++.++|+.+......+.+++ |+-
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~-gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVAREC-GIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc-CCC
Confidence 58899999999999999999999999999888888887 773
No 203
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.67 E-value=0.12 Score=42.11 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l 219 (320)
.++.||+.+.+..|... ..-+++|.+..+++......+ |+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~i-g~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMI-GV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhc-CC
Confidence 57999999999999887 556677777777776666554 55
No 204
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.40 E-value=0.011 Score=51.86 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=64.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchh------------hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKS------------SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVT 246 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~------------~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~ 246 (320)
.++|.+..=|..|.+.||.+++.||.... -+..+++.+ ++. |....+...-...||..-+++.
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl-~vP----i~~~~A~~~~~yRKP~tGMwe~ 178 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANL-GVP----IQLLAAIIKGKYRKPSTGMWEF 178 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhc-CCc----eEEeeeccCCcccCcchhHHHH
Confidence 36777778888899999999999987521 122233332 332 3333333344678999999999
Q ss_pred HHHHcC----CCCCCEEEEecC---------------HhhHHHHHHcCCeEE
Q 020871 247 AAKRLG----ISEKDCLVVEDS---------------VIGLQAATRAGMACV 279 (320)
Q Consensus 247 ~~~~l~----~~~~~~v~VGD~---------------~~Dv~~a~~aG~~~v 279 (320)
.++..+ +.-..++||||- ..|...|.++|+...
T Consensus 179 ~~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 179 LKRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 998765 334456688873 248899999997653
No 205
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.1 Score=49.53 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT 205 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~ 205 (320)
++..++...|+.||.+|++++.+|+..
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTGDK 684 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTGDK 684 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcCcc
Confidence 577899999999999999999998764
No 206
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.92 E-value=0.0069 Score=47.55 Aligned_cols=84 Identities=23% Similarity=0.343 Sum_probs=57.3
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC-ccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM-ERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l-~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
+.++||+.++|+.+.+. +.+++.|.+....+..+++.+ .- ..+ |+.++..++....+.. +..-++.+|-+.+
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~l-dp~~~~--~~~~~~r~~~~~~~~~---~~KdL~~l~~~~~ 107 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDAL-DPNGKL--FSRRLYRDDCTFDKGS---YIKDLSKLGRDLD 107 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHH-TTTTSS--EEEEEEGGGSEEETTE---EE--GGGSSS-GG
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhh-hhhccc--cccccccccccccccc---cccchHHHhhccc
Confidence 57899999999999666 999999999999999999887 43 445 7877776544311110 1134555677789
Q ss_pred CEEEEecCHhhH
Q 020871 257 DCLVVEDSVIGL 268 (320)
Q Consensus 257 ~~v~VGD~~~Dv 268 (320)
++|+|+|++.-.
T Consensus 108 ~vvivDD~~~~~ 119 (159)
T PF03031_consen 108 NVVIVDDSPRKW 119 (159)
T ss_dssp GEEEEES-GGGG
T ss_pred cEEEEeCCHHHe
Confidence 999999999744
No 207
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.90 E-value=0.032 Score=56.47 Aligned_cols=38 Identities=18% Similarity=0.150 Sum_probs=31.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
++-.||.+.+..|+++|+|++++|+...+.+..+....
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC 688 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSC 688 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhh
Confidence 68889999999999999999999988766555554443
No 208
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.88 E-value=0.036 Score=46.32 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC----CCC----CCCCCC
Q 020871 169 YQQIIKSGTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG----DDV----KQKKPD 240 (320)
Q Consensus 169 ~~~~~~~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~----~~~----~~~KP~ 240 (320)
..+.+....+.+++|+.++++.|.++++++.|+|.+-...++.++++. +.-.- --.|++- ++- +-..|-
T Consensus 80 i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~--Nv~VvSN~M~Fd~~g~l~gF~~~l 156 (246)
T PF05822_consen 80 IEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHP--NVKVVSNFMDFDEDGVLVGFKGPL 156 (246)
T ss_dssp HHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BT--TEEEEEE-EEE-TTSBEEEE-SS-
T ss_pred HHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCC--CeEEEeeeEEECCcceEeecCCCc
Confidence 444455667889999999999999999999999999999999999886 43211 1122221 110 111121
Q ss_pred HHHHHH---HH------HHcCCCCCCEEEEecCHhhHHHHHHc
Q 020871 241 PSIYVT---AA------KRLGISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 241 ~~~~~~---~~------~~l~~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
-..|.. ++ +.+. ...+++..||+..|+.|+..+
T Consensus 157 IH~~NKn~~~l~~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 157 IHTFNKNESALEDSPYFKQLK-KRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp --TT-HHHHHHTTHHHHHCTT-T--EEEEEESSSGGGGTTTT-
T ss_pred eEEeeCCcccccCchHHHHhc-cCCcEEEecCccCChHhhcCC
Confidence 111111 11 1222 346799999999999999877
No 209
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.023 Score=42.48 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCC--chhhHHHHHHHhhCCccccC-cceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAA--TKSSVILCLENLIGMERFEG-LDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~--~~~~~~~~l~~~~~l~~~~~-fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
+...|++.+.+++|.+. +.++|+|.. -........+.+...-.|.. -..|+|+. | |+-
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn-----K-------------niv 127 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN-----K-------------NIV 127 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC-----C-------------CeE
Confidence 47899999999999998 899999977 34444444444321111111 23455542 1 111
Q ss_pred CCCEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 255 EKDCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
.-=++|+|++..++... |++ +++....
T Consensus 128 -kaDilIDDnp~nLE~F~--G~k-IlFdA~H 154 (180)
T COG4502 128 -KADILIDDNPLNLENFK--GNK-ILFDAHH 154 (180)
T ss_pred -EeeEEecCCchhhhhcc--Cce-EEEeccc
Confidence 11267999999888775 444 4444433
No 210
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=95.75 E-value=0.06 Score=44.48 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=55.5
Q ss_pred hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 217 IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
++++.++..+.|+++-.++ | ...|+.+.+++|-+...-++|||+..--.+|+..+|+++-+.....
T Consensus 196 y~L~~~f~ieNIYSa~kvG--K--~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~D 261 (274)
T TIGR01658 196 FRLDTIFRIENVYSSIKVG--K--LQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPD 261 (274)
T ss_pred hccCCccccccccchhhcc--h--HHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecCCC
Confidence 5889988888888886654 3 4599999999998778889999999999999999999988866543
No 211
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=95.59 E-value=0.054 Score=46.45 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHHC----CCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 179 EPRPGVLRLMDEAKAA----GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~----g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
.+.||+.+.|+.|.++ .++...+||+..-.-....+++ ... .+.-+..+++-.... .|+.+. ++ .
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~l---S~~--Lgv~Vs~dqviqSHs---P~r~l~-~~--~ 119 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQEL---SAL--LGVEVSADQVIQSHS---PFRLLV-EY--H 119 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHH---HHh--hCCccCHHHHHhhcC---hHHHHh-hh--h
Confidence 4667777777778777 7899999998754333222222 221 122222222211111 344444 22 3
Q ss_pred CCCEEEEecCHhhHHHHHHcCCeEEE
Q 020871 255 EKDCLVVEDSVIGLQAATRAGMACVI 280 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~aG~~~v~ 280 (320)
-++++++|++. -.+.|+..|.+-|.
T Consensus 120 ~k~vLv~G~~~-vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 120 YKRVLVVGQGS-VREVAEGYGFKNVV 144 (389)
T ss_pred hceEEEecCCc-HHHHhhccCcccee
Confidence 47899999665 36778889987654
No 212
>PRK10444 UMP phosphatase; Provisional
Probab=95.58 E-value=0.11 Score=44.11 Aligned_cols=103 Identities=12% Similarity=0.155 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCC--------CCCC---CCHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDV--------KQKK---PDPSIYV 245 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~--------~~~K---P~~~~~~ 245 (320)
.++||+.++++.|++.|++++++||+.........+++ .|++-- .+.++++... ...+ .-...+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~--~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~ 94 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVP--DSVFYTSAMATADFLRRQEGKKAYVIGEGALI 94 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC--HhhEecHHHHHHHHHHhCCCCEEEEEcCHHHH
Confidence 68999999999999999999999999876555555554 255322 3555555210 0000 0012344
Q ss_pred HHHHHcCCC----CCCEEEEecCHh-hHHHHH------HcCCeEEEEeC
Q 020871 246 TAAKRLGIS----EKDCLVVEDSVI-GLQAAT------RAGMACVITYT 283 (320)
Q Consensus 246 ~~~~~l~~~----~~~~v~VGD~~~-Dv~~a~------~aG~~~v~v~~ 283 (320)
..++..|+. ..++|+||...+ +..... ..|...+..|.
T Consensus 95 ~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~ 143 (248)
T PRK10444 95 HELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNP 143 (248)
T ss_pred HHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECC
Confidence 444554543 236788887764 433322 34777666553
No 213
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.058 Score=44.71 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC----CCCC----CCCCCHHH----
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG----DDVK----QKKPDPSI---- 243 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~----~~~~----~~KP~~~~---- 243 (320)
..+.+..|+.+++..|+.+++++.++|.+--..++..+.+..++-.. ..+++- ++.+ -.+|--..
T Consensus 135 s~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn---~k~vSN~~~F~edg~l~gF~~~Lihtfnkn 211 (298)
T KOG3128|consen 135 SNIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPN---VKFVSNYMDFDEDGNLCGFSQPLIHTFNKN 211 (298)
T ss_pred hhHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCcc---HHhhhhhhhhcccchhhhhhHHHHHHHccc
Confidence 44567889999999999999999999999988888888775344322 222221 1111 11221111
Q ss_pred ---HHHHHHHcC--CCCCCEEEEecCHhhHHHHHHc
Q 020871 244 ---YVTAAKRLG--ISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 244 ---~~~~~~~l~--~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
.+...+.+. -....+++.||+..|+.|+..+
T Consensus 212 ~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 212 SSVLQNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred hHHHHhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 122222222 3457899999999999999876
No 214
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=94.86 E-value=0.2 Score=42.61 Aligned_cols=45 Identities=9% Similarity=-0.035 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcC---CeEEEEeCC
Q 020871 240 DPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAG---MACVITYTS 284 (320)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG---~~~v~v~~~ 284 (320)
+...+..+++++.....-+++.||...|=.+...+. -.+|.+..+
T Consensus 183 KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~ 230 (266)
T COG1877 183 KGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVG 230 (266)
T ss_pred hHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCC
Confidence 566778888887766667999999998777777665 445555444
No 215
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=94.47 E-value=0.22 Score=45.97 Aligned_cols=91 Identities=11% Similarity=-0.050 Sum_probs=51.8
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc------eEEeCCCCCCCCCCHHH-HHHHHHHcCCCCCCEE
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD------CFLAGDDVKQKKPDPSI-YVTAAKRLGISEKDCL 259 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd------~v~~~~~~~~~KP~~~~-~~~~~~~l~~~~~~~v 259 (320)
.++..+..| +++++|...+.+++..+++..|.+..-+-+ ..+++-- .++...+. ...+.+.+|- ....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~--~G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFI--RGTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEE--ecCccHHHHHHHHHHHhCc-cCcee
Confidence 445567778 999999999999999998844654331111 1111110 12222333 3344444663 24578
Q ss_pred EEecCHhhHHHHHHcCCeEEEEeC
Q 020871 260 VVEDSVIGLQAATRAGMACVITYT 283 (320)
Q Consensus 260 ~VGD~~~Dv~~a~~aG~~~v~v~~ 283 (320)
-+||+..|-....- |+.+.+..
T Consensus 177 g~~~~~~~~~f~~~--ck~~~~~~ 198 (498)
T PLN02499 177 GLGRISASSSFLSL--CKEQIHPP 198 (498)
T ss_pred cccCCcccchhhhh--CceEEecC
Confidence 88888866665554 44555533
No 216
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=94.26 E-value=0.68 Score=38.91 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=48.2
Q ss_pred CCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHH
Q 020871 195 GKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAAT 272 (320)
Q Consensus 195 g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~ 272 (320)
-++++++|..+....++.++.+ +|+. +|..+.- .+-|+.. +++.++ |. |||+|....++.|.
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~----vDEafFL----gG~~K~~----vL~~~~--ph--IFFDDQ~~H~~~a~ 249 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVR----VDEAFFL----GGLPKGP----VLKAFR--PH--IFFDDQDGHLESAS 249 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCc----HhHHHHh----CCCchhH----HHHhhC--CC--EeecCchhhhhHhh
Confidence 4789999988765556665554 2543 3422221 1333333 445544 22 89999999999998
Q ss_pred HcCCeEEEEeCCCC
Q 020871 273 RAGMACVITYTSST 286 (320)
Q Consensus 273 ~aG~~~v~v~~~~~ 286 (320)
.+++++.|+.+..
T Consensus 250 -~~vps~hVP~gv~ 262 (264)
T PF06189_consen 250 -KVVPSGHVPYGVA 262 (264)
T ss_pred -cCCCEEeccCCcC
Confidence 8888888877653
No 217
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=94.16 E-value=0.42 Score=42.26 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=34.9
Q ss_pred CccEEEEecCCccccch------HHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHH
Q 020871 66 SLQALIFDCDGVIIESE------HLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQ 121 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 121 (320)
.+++|.||=|+|||+.. ..+...+..+++ .|+.....++..|.....+++.+...
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~-~gv~VgIVTAAGY~~a~kY~~RL~GL 206 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLR-RGVKVGIVTAAGYPGAEKYEERLHGL 206 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHh-cCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 89999999999999753 334444444443 35555555555666666666665433
No 218
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.06 E-value=0.81 Score=38.29 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=73.0
Q ss_pred CCCChhHHHHHH---HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~---~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++|+..++++ .|-+.|+.+..+++.+.... +.|++. |.......-.-+++ +.+-.++..++.+++...++
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a-~rLed~-Gc~aVMPlgsPIGS---g~Gl~n~~~l~~i~e~~~vp 191 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLA-KHLEDI-GCATVMPLGSPIGS---GQGLQNLLNLQIIIENAKIP 191 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHH-HHHHHc-CCeEEeeccCcccC---CCCCCCHHHHHHHHHcCCCc
Confidence 357888877776 57788999999999887744 455565 65433222222222 45667888999998877653
Q ss_pred CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCc
Q 020871 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 255 ~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
|++|-+. +|+..|-+.|+..|+++++...
T Consensus 192 ----VivdAGIgt~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 192 ----VIIDAGIGTPSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred ----EEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence 6788776 6999999999999999988653
No 219
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=93.85 E-value=0.73 Score=43.58 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchh---hHHHHHHHhh--CCccccCcc-eEEeC---------CCCCCCCCCHHHHH
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKS---SVILCLENLI--GMERFEGLD-CFLAG---------DDVKQKKPDPSIYV 245 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~---~~~~~l~~~~--~l~~~~~fd-~v~~~---------~~~~~~KP~~~~~~ 245 (320)
.-||..+....+++||++..+|...-. ..+..|+.+. |- .+ .| -|+.+ .++-..||+ -|+
T Consensus 560 h~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~-~L--PdGPViLSPd~lf~Al~REVI~RkPe--~FK 634 (738)
T KOG2116|consen 560 HTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGK-KL--PDGPVILSPDSLFAALHREVIERKPE--VFK 634 (738)
T ss_pred hhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCc-cC--CCCCEEeCCCcchHHHHHHHHHcCch--hhh
Confidence 347888888899999999999976532 2223333321 11 11 22 22222 223456665 333
Q ss_pred HHH-----HHcCCCC-CCEEEEecCHhhHHHHHHcCCe
Q 020871 246 TAA-----KRLGISE-KDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 246 ~~~-----~~l~~~~-~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
-+| +.+.-.. .=..-||++.+|+..-+.+|++
T Consensus 635 IAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 635 IACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCC
Confidence 333 2333111 2355799999999999999986
No 220
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.81 E-value=0.59 Score=38.60 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCChhHHHHHH---HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~---~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++|+..++++ .|-+.|+.+.-+++.+.... +.|++. |..-....-.-++ .+.+--++..++.++++.+++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a-krL~d~-GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vP 177 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLA-KRLEDA-GCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVP 177 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHH-HHHHHT-T-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSS
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHH-HHHHHC-CCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCc
Confidence 357788877776 57889999999999887744 455665 6554311111111 245667788999999999875
Q ss_pred CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCC
Q 020871 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 255 ~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
|+|+-+. +|...|-+.|+..|++|+...
T Consensus 178 ----vIvDAGiG~pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 178 ----VIVDAGIGTPSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp ----BEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred ----EEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence 5677665 699999999999999987643
No 221
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.77 E-value=1.3 Score=45.15 Aligned_cols=50 Identities=14% Similarity=0.003 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCE-EEEecCHh-hHHHHHHcCCeEEEEeC
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDC-LVVEDSVI-GLQAATRAGMACVITYT 283 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~-v~VGD~~~-Dv~~a~~aG~~~v~v~~ 283 (320)
++..-.+...+.++..++|++.+++ |++||+.| |++....--..+|.+.+
T Consensus 951 lP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~g 1002 (1050)
T TIGR02468 951 IPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVILKG 1002 (1050)
T ss_pred eeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEEec
Confidence 3455566789999999999999999 55999999 98877444345665544
No 222
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=93.48 E-value=1.1 Score=38.36 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
.+.||+.++++.|++.|..+.++||++....+...++. .|+..+ ..+++ .-|.-....++-+.. -..+
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v-------~e~~i--~ssa~~~a~ylk~~~-~~~k 107 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSV-------KEENI--FSSAYAIADYLKKRK-PFGK 107 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCcccc-------Ccccc--cChHHHHHHHHHHhC-cCCC
Confidence 69999999999999999999999999977666655543 244432 11111 123333333333333 3346
Q ss_pred CEEEEecCHhhHHHHHHcCCeEEEEeCCC
Q 020871 257 DCLVVEDSVIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 257 ~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
.+.++|-..- -+.++++|..+.......
T Consensus 108 ~Vyvig~~gi-~~eL~~aG~~~~g~~~~~ 135 (306)
T KOG2882|consen 108 KVYVIGEEGI-REELDEAGFEYFGGGPDG 135 (306)
T ss_pred eEEEecchhh-hHHHHHcCceeecCCCCc
Confidence 7777776664 366778898776554433
No 223
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.40 E-value=0.17 Score=44.94 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=73.3
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhC--CccccCcceEEeCC---------------CCCC-------
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIG--MERFEGLDCFLAGD---------------DVKQ------- 236 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~--l~~~~~fd~v~~~~---------------~~~~------- 236 (320)
.+....+|..+++.|.+..+.||++-.........+.+ +..+ ||.++... +...
T Consensus 200 d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~y--fd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~ 277 (424)
T KOG2469|consen 200 DGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETY--FDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGD 277 (424)
T ss_pred cCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCccee--EEEEEEeccCCccccccceeeeeccccccccccc
Confidence 44556699999999999999999998888888877644 5666 66665542 0111
Q ss_pred --------CCCCHHHHHHHHHHcCCCCCCEEEEecCHh-hHHHH-HHcCCeEEEEeC
Q 020871 237 --------KKPDPSIYVTAAKRLGISEKDCLVVEDSVI-GLQAA-TRAGMACVITYT 283 (320)
Q Consensus 237 --------~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~-Dv~~a-~~aG~~~v~v~~ 283 (320)
+++.+...+.++..+++.-.+++++||+.. |+.-- +.-||.+++|-.
T Consensus 278 ~~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 278 NTGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred cCCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 233445677888888888899999999995 76544 456888777644
No 224
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=93.21 E-value=0.81 Score=38.43 Aligned_cols=86 Identities=16% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHH---HHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC---LENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~---l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
.++|++.+.|..++++|+++.++||+........ +....|+.-- .+.++.+.. .....+++.+ +.
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~--~~~iits~~---------~~~~~l~~~~-~~ 81 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVS--PDQIITSGS---------VTKDLLRQRF-EG 81 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCC--HHHeeeHHH---------HHHHHHHHhC-CC
Confidence 5789999999999999999999998874444433 3332254422 555655422 2222222222 22
Q ss_pred CCEEEEecCHhhHHHHHHcCCe
Q 020871 256 KDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
..++++|.. ...+.++..|+.
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCCc
Confidence 457777753 345556666754
No 225
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=93.21 E-value=0.18 Score=42.72 Aligned_cols=102 Identities=18% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc---hhhHHHHHHHhhCCccccCcceEEeCCCC-----CCCCCC-------HHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT---KSSVILCLENLIGMERFEGLDCFLAGDDV-----KQKKPD-------PSI 243 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~---~~~~~~~l~~~~~l~~~~~fd~v~~~~~~-----~~~KP~-------~~~ 243 (320)
.+.|++.++|+.|+++|++++++||+. .......++.+ |++.- .+.++++... ...++. .+.
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~-g~~~~--~~~iit~~~~~~~~l~~~~~~~~v~~lg~~~ 93 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASF-DIPAT--LETVFTASMATADYMNDLKLEKTVYVIGEEG 93 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHc-CCCCC--hhhEeeHHHHHHHHHHhcCCCCEEEEEcChh
Confidence 467899999999999999999999855 45555566665 77643 5667665221 111111 123
Q ss_pred HHHHHHHcCCC----CCCEEEEecCH----hhHHHH---HHcCCeEEEEeC
Q 020871 244 YVTAAKRLGIS----EKDCLVVEDSV----IGLQAA---TRAGMACVITYT 283 (320)
Q Consensus 244 ~~~~~~~l~~~----~~~~v~VGD~~----~Dv~~a---~~aG~~~v~v~~ 283 (320)
+...++..|+. ..+.|++|... .++..+ ...|+..+..|.
T Consensus 94 l~~~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN~ 144 (249)
T TIGR01457 94 LKEAIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTNG 144 (249)
T ss_pred HHHHHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 55666666643 23567776643 133222 145777555443
No 226
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.14 E-value=0.14 Score=43.64 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=37.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhh---HHHHHHHhhCCccccCcceEEeC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAG 231 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~---~~~~l~~~~~l~~~~~fd~v~~~ 231 (320)
.++|++.+.|+.|+++|++++++||+.... ....++.+ |++-- .+.++++
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~-g~~~~--~~~i~ts 73 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRL-GFDIS--EDEVFTP 73 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHc-CCCCC--HHHeEcH
Confidence 489999999999999999999999987664 44455554 66522 4555554
No 227
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=92.56 E-value=0.064 Score=42.51 Aligned_cols=17 Identities=29% Similarity=0.739 Sum_probs=15.3
Q ss_pred CCccEEEEecCCccccc
Q 020871 65 QSLQALIFDCDGVIIES 81 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~ 81 (320)
..+|+++||+||||.|.
T Consensus 5 ~~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDG 21 (169)
T ss_pred ccCeEEEEeCceeeECC
Confidence 36999999999999986
No 228
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=91.99 E-value=0.083 Score=40.54 Aligned_cols=18 Identities=33% Similarity=0.767 Sum_probs=15.9
Q ss_pred CCccEEEEecCCccccch
Q 020871 65 QSLQALIFDCDGVIIESE 82 (320)
Q Consensus 65 ~~~k~viFD~DGTL~d~~ 82 (320)
.++|++|||+||||+|..
T Consensus 6 ~~IkLli~DVDGvLTDG~ 23 (170)
T COG1778 6 KNIKLLILDVDGVLTDGK 23 (170)
T ss_pred hhceEEEEeccceeecCe
Confidence 479999999999999863
No 229
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=91.63 E-value=2.2 Score=35.20 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCChhHHHHHH---HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 179 EPRPGVLRLMD---EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 179 ~~~~g~~~~l~---~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
.+.|+..++++ .|-+.|+.+..+++.+.-.. +.|+.. |.......-.-+++ +.+--++..++.++++..++
T Consensus 111 tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~a-rrLee~-GcaavMPl~aPIGS---g~G~~n~~~l~iiie~a~VP- 184 (262)
T COG2022 111 TLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLA-RRLEEA-GCAAVMPLGAPIGS---GLGLQNPYNLEIIIEEADVP- 184 (262)
T ss_pred ccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHH-HHHHhc-CceEeccccccccC---CcCcCCHHHHHHHHHhCCCC-
Confidence 57888888876 57778999999999887644 455554 65443222333333 44556788999999999875
Q ss_pred CCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCc
Q 020871 256 KDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 256 ~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
+.|+-+. +|...+-+.|+..|++|+....
T Consensus 185 ---viVDAGiG~pSdAa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 185 ---VIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred ---EEEeCCCCChhHHHHHHhcccceeehhhHhhc
Confidence 6677665 7999999999999999886543
No 230
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=90.96 E-value=3 Score=36.84 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
+...++|.+.++++.+++.|+.+.+.||+...
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 45567899999999999999999999999763
No 231
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=90.86 E-value=1 Score=44.11 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCC----------------CCCHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQK----------------KPDPS 242 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~----------------KP~~~ 242 (320)
+.+||+.+.++..+..|+.+-.+|+.+-...+.+..++ |+-.-.+=...+.+.+...- ...|.
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eC-GILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIAREC-GILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHc-ccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 67899999999999999999999999988888887776 76443110123333332210 01111
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
--..+.+.+.-..+-+.+-||+.||..+.+.|.+...|--.|
T Consensus 726 DK~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaG 767 (1034)
T KOG0204|consen 726 DKHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAG 767 (1034)
T ss_pred hHHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccc
Confidence 111222222212233456799999999999999887764333
No 232
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=90.81 E-value=4.1 Score=35.63 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=68.8
Q ss_pred CCCChhHHHHHHHHHHC---CCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~---g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++|+..++++..+.. |+.+.++.+.+..... .+..+ |-..+...-..++ .+.+-.+|+.+..+++...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~-~l~~~-g~~avmPl~~pIG---sg~gv~~p~~i~~~~e~~~v- 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAK-RLEDA-GAVAVMPLGAPIG---SGLGIQNPYTIRLIVEGATV- 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHhc-CCEEEeecccccc---CCCCCCCHHHHHHHHHcCCC-
Confidence 45789999999887777 9999555555555443 44454 4321111122222 23344588899999988554
Q ss_pred CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCc
Q 020871 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 255 ~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
-+++|-+. .|+..|-+.|...|+++++...
T Consensus 251 ---pVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 251 ---PVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred ---cEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 37788876 6999999999999999998653
No 233
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=90.01 E-value=1.3 Score=35.83 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
...||+.+.|+.|+..+.++=.+||...+.-..+.+++
T Consensus 23 ~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL 60 (262)
T KOG3040|consen 23 AAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL 60 (262)
T ss_pred ccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH
Confidence 38899999999999999999999999887777666665
No 234
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.77 E-value=0.78 Score=39.44 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERF 222 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~ 222 (320)
...+++.++|+.|++.|++++++|+.....+...++.+ ++..+
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l-~l~~~ 63 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL-GLEDP 63 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc-CCCCC
Confidence 46678999999999999999999999998888888886 77644
No 235
>PRK00208 thiG thiazole synthase; Reviewed
Probab=89.04 E-value=7.5 Score=32.65 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCCChhHHHHHHHHHHC---CCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~---g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++|+..++++..+.. |+.+.-+.+.+.... +.++.+ |.......-..+++. .+..+++.++.+.+..++
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~a-k~l~~~-G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~v- 176 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLA-KRLEEA-GCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADV- 176 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHc-CCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCC-
Confidence 35788998888887777 999983444444434 455554 544331111223322 334457788888776544
Q ss_pred CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCc
Q 020871 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 255 ~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.|++|-+. .|+..+-+.|...|+++++...
T Consensus 177 ---pVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 177 ---PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred ---eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 47777766 5999999999999999888654
No 236
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.90 E-value=9.2 Score=32.08 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCChhHHHHHHHHHHC---CCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020871 178 VEPRPGVLRLMDEAKAA---GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~---g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
..++|+..++++..+.. |+.+..+.+.+.... +.+..+ |.......-..+++ +.+..+++.+..+.+..++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a-r~l~~~-G~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~v- 176 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLA-KRLEDA-GCAAVMPLGSPIGS---GQGLLNPYNLRIIIERADV- 176 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHc-CCCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCC-
Confidence 35889999999887777 999984555555544 345554 54433111122222 2344458888888776543
Q ss_pred CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCc
Q 020871 255 EKDCLVVEDSV---IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 255 ~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.|++|-+. .|+..+-+.|...|++++....
T Consensus 177 ---pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 177 ---PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred ---cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 36677665 6999999999999999887654
No 237
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=88.34 E-value=2.2 Score=37.63 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHC----CCcEEEEeCCch---hhHHHHH-HHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAA----GKKVAVCSAATK---SSVILCL-ENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKR 250 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~----g~~i~i~Tn~~~---~~~~~~l-~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~ 250 (320)
.+.||+.++++.|+.. |+++.++||+.. ......+ +.+ |+.-- .+.++.+. ......+++
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l-G~~~~--~~~i~~s~---------~~~~~ll~~ 83 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL-GVDVS--PLQVIQSH---------SPYKSLVNK 83 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc-CCCCC--HHHHHhhh---------HHHHHHHHH
Confidence 5799999999999998 999999999973 3222333 444 66422 34444331 133444455
Q ss_pred cCCCCCCEEEEecCHhhHHHHHHcCCeEE
Q 020871 251 LGISEKDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 251 l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
++ ..+++||.+. -.+.++.+|+..+
T Consensus 84 ~~---~~v~viG~~~-~~~~l~~~G~~~v 108 (321)
T TIGR01456 84 YE---KRILAVGTGS-VRGVAEGYGFQNV 108 (321)
T ss_pred cC---CceEEEeChH-HHHHHHHcCCccc
Confidence 43 3688899765 4677778998765
No 238
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=88.06 E-value=2 Score=38.75 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=20.5
Q ss_pred HcCCCCCC-EEEEecCHhhHHHHHHcCCe
Q 020871 250 RLGISEKD-CLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 250 ~l~~~~~~-~v~VGD~~~Dv~~a~~aG~~ 277 (320)
.+...+.- ..-||+...|+..-++.|++
T Consensus 488 slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 488 SLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HhhCcCChhhccccccchhheeeccccCC
Confidence 34444442 33689999999999999986
No 239
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=87.82 E-value=0.55 Score=40.52 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHc--------CC-CCCCEEEEecCH-hhHHHHH---------------HcCCeEEEEeCCCCc
Q 020871 235 KQKKPDPSIYVTAAKRL--------GI-SEKDCLVVEDSV-IGLQAAT---------------RAGMACVITYTSSTA 287 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l--------~~-~~~~~v~VGD~~-~Dv~~a~---------------~aG~~~v~v~~~~~~ 287 (320)
..+||.+-.|+++...+ +. ++....||||++ .|+.+|. +-||..|+|..|...
T Consensus 268 t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 268 TLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred ccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 46889887777654322 23 457889999999 6999996 678888888766544
No 240
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=87.54 E-value=0.28 Score=38.29 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=12.1
Q ss_pred cEEEEecCCccccch
Q 020871 68 QALIFDCDGVIIESE 82 (320)
Q Consensus 68 k~viFD~DGTL~d~~ 82 (320)
|++|||+||||+.+.
T Consensus 1 k~LVlDLD~TLv~~~ 15 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSS 15 (159)
T ss_dssp EEEEEE-CTTTEEEE
T ss_pred CEEEEeCCCcEEEEe
Confidence 689999999999764
No 241
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=86.70 E-value=2.2 Score=36.46 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 20 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~ 60 (270)
T PRK10513 20 TISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKEL-HME 60 (270)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHh-CCC
Confidence 46778899999999999999999999998888888886 765
No 242
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=86.43 E-value=2.6 Score=41.39 Aligned_cols=39 Identities=8% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
.++-|++++.++.|...+++++.+|+.+.-..-++.+++
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v 712 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEV 712 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheehhee
Confidence 468899999999999999999999999877666666654
No 243
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=85.96 E-value=1.9 Score=35.50 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.|...+.|++|++.|++++++|+.....+...++.+ ++.
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l-~~~ 58 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLI-GTS 58 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHh-CCC
Confidence 57789999999999999999999999998888887776 665
No 244
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.58 E-value=1.5 Score=44.30 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCChhHHHHHHHHHHC-CCcEEEEeCCchhhHHHHHHHh
Q 020871 178 VEPRPGVLRLMDEAKAA-GKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~-g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
..+.|++.++|+.|.+. +..++|+|+.+...++..+...
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 35788999999999876 6789999999998888777553
No 245
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=85.48 E-value=2.1 Score=35.72 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
..++..+.|++|+++|++++++|+.....+...++.+ |+..
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~l-g~~~ 56 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREEL-GVEP 56 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-CCCC
Confidence 5567899999999999999999999988888888886 7643
No 246
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=85.17 E-value=3.3 Score=39.68 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
++++|++.++|+.+.+. +.++|+|-+.+.++..+++-+=.-..||+ |.|++.++-+..| ........|..
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~-dRIisrde~~~~k--------t~dL~~~~p~g 269 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFG-DRIISRDESPFFK--------TLDLVLLFPCG 269 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCcccc-ceEEEecCCCccc--------ccccccCCCCC
Confidence 68999999999999988 99999999999998888776612234422 6677776643333 22222233333
Q ss_pred ---EEEEecCHh
Q 020871 258 ---CLVVEDSVI 266 (320)
Q Consensus 258 ---~v~VGD~~~ 266 (320)
++.|+|+.+
T Consensus 270 ~smvvIIDDr~d 281 (635)
T KOG0323|consen 270 DSMVVIIDDRSD 281 (635)
T ss_pred CccEEEEeCccc
Confidence 777777764
No 247
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=84.25 E-value=2.8 Score=34.77 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
.+.|...+.|.+|+++|++++++|+.....+...++.+ ++..
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 61 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLI-GTSG 61 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCCC
Confidence 46788999999999999999999999998888777776 7654
No 248
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=84.20 E-value=2.4 Score=35.01 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
..+...+.|+.|+++|++++++||.....+...++.+ ++.
T Consensus 17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l-~~~ 56 (221)
T TIGR02463 17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL-GLT 56 (221)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCC
Confidence 3444789999999999999999999999999899887 765
No 249
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=84.06 E-value=23 Score=29.45 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=51.8
Q ss_pred CCcEEEEeCCch---hhHHHHHHHhhCCccccCcceE-EeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH--hhH
Q 020871 195 GKKVAVCSAATK---SSVILCLENLIGMERFEGLDCF-LAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGL 268 (320)
Q Consensus 195 g~~i~i~Tn~~~---~~~~~~l~~~~~l~~~~~fd~v-~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv 268 (320)
++.+-+++.+.. +.++...... +..| ..|.+ +.|-.- .-|-|..-+.+++.-|++ |++|||.+ .+.
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~--~~~~-~pDf~i~isPN~--a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~ 102 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKM--LEEW-KPDFVIVISPNP--AAPGPKKAREILKAAGIP---CIVIGDAPGKKVK 102 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHH--HHhh-CCCEEEEECCCC--CCCCchHHHHHHHhcCCC---EEEEcCCCccchH
Confidence 678888887753 3233222221 1222 13433 334322 345566788899888884 89999999 377
Q ss_pred HHHHHcCCeEEEEeC
Q 020871 269 QAATRAGMACVITYT 283 (320)
Q Consensus 269 ~~a~~aG~~~v~v~~ 283 (320)
...+..|+..+.+..
T Consensus 103 d~l~~~g~GYIivk~ 117 (277)
T PRK00994 103 DAMEEQGLGYIIVKA 117 (277)
T ss_pred HHHHhcCCcEEEEec
Confidence 889999999888754
No 250
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=83.63 E-value=2.7 Score=35.62 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++.
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~-~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKEL-GLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc-CCC
Confidence 46788899999999999999999999988888888776 665
No 251
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.10 E-value=3.4 Score=35.78 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
..++.+.+.|++|+++|++++++|+.....+....+.+ ++..
T Consensus 18 ~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~L-gl~~ 59 (302)
T PRK12702 18 NSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQL-RLEH 59 (302)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-CCCC
Confidence 46677899999999999999999999999888888887 7764
No 252
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=82.44 E-value=3 Score=35.75 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
.+.+...+.|++|+++|++++++|+.....+...++.+ ++..
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 60 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGAL-SLDA 60 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHc-CCCC
Confidence 57788899999999999999999999998888888886 7653
No 253
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=82.33 E-value=4.8 Score=32.49 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=20.9
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHh
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSH 95 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~ 95 (320)
-++.||+||||........+.+.+.+.+
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHH
Confidence 3789999999998876666666665554
No 254
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=82.16 E-value=3.3 Score=34.18 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.+...+.|++|++.|++++++|+.....+...++.+ ++.
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l-~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI-GTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh-CCC
Confidence 46678889999999999999999999998888887776 643
No 255
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=81.98 E-value=13 Score=27.68 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCch-hhHHHHHHHhhCCcccc-------CcceEEeCCCCCCCCCCHHHHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATK-SSVILCLENLIGMERFE-------GLDCFLAGDDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~-~~~~~~l~~~~~l~~~~-------~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (320)
...|+++...|..|++.|+.++++|++.. +.+...|+.+ .+.... .|+.+..++.. +-..|..+-+
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~f-kvk~~Gvlkps~e~ft~~~~g~gs-----klghfke~~n 116 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETF-KVKQTGVLKPSLEEFTFEAVGDGS-----KLGHFKEFTN 116 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHh-ccCcccccchhhhcCceeeecCcc-----cchhHHHHhh
Confidence 57899999999999999999999998874 4444455543 443220 12222222221 1224455656
Q ss_pred HcCCCCCCEEEEecCHhh
Q 020871 250 RLGISEKDCLVVEDSVIG 267 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~D 267 (320)
..|..-.+..++.|-..+
T Consensus 117 ~s~~~~k~~~~fdDesrn 134 (144)
T KOG4549|consen 117 NSNSIEKNKQVFDDESRN 134 (144)
T ss_pred ccCcchhceeeecccccC
Confidence 666666677777776643
No 256
>PRK10976 putative hydrolase; Provisional
Probab=81.41 E-value=3.3 Score=35.28 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
.+.+...+.|++++++|++++++|+.....+...++.+ ++..
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 60 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNL-EIKS 60 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CCCC
Confidence 46778899999999999999999999998888888776 7653
No 257
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.25 E-value=2.8 Score=41.96 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=24.8
Q ss_pred CCChhHHHHHHHHHHC-CCcEEEEeCCchhhHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAA-GKKVAVCSAATKSSVILCLEN 215 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~-g~~i~i~Tn~~~~~~~~~l~~ 215 (320)
.+.|++.++|+.|.+. +..++|+|+.+...++..+..
T Consensus 532 ~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~ 569 (797)
T PLN03063 532 GLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGE 569 (797)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCC
Confidence 4566777777777664 566777777777666665543
No 258
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=80.73 E-value=3.7 Score=34.99 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
.+.|...+.|++++++|++++++|+.....+...++.+ ++..
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l-~~~~ 61 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQAL-ALDT 61 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhc-CCCC
Confidence 57788899999999999999999999988888888876 6653
No 259
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=80.62 E-value=1.7 Score=42.68 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc-------------------cc--Ccc-eEEeCCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER-------------------FE--GLD-CFLAGDDVKQ 236 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~-------------------~~--~fd-~v~~~~~~~~ 236 (320)
++...+.+.+...|+.|++++.+|+.-........+.. |+-. .. .-+ .|+.+.+..
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~v-gIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~- 667 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSV-GIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP- 667 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhhe-eeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc-
Confidence 56778889999999999999999987665555554443 4210 00 001 112222211
Q ss_pred CCCCHHHHHHHHHHcC------CCCCC--------------EEEEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 237 KKPDPSIYVTAAKRLG------ISEKD--------------CLVVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~------~~~~~--------------~v~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
--.++-++++++... .+|++ +-+.||+.||-.+.+.|.+..++--.|
T Consensus 668 -~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaG 734 (1019)
T KOG0203|consen 668 -DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAG 734 (1019)
T ss_pred -ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeecccc
Confidence 112234555554432 12222 447799999999999999998874444
No 260
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=80.34 E-value=39 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=28.0
Q ss_pred hCCCCCChhHHHHHHHHHHCCCcEEEEeCCch
Q 020871 175 SGTVEPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 175 ~~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
.+...++|++.++++.+++.|..+.++||+..
T Consensus 80 GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 80 GGEPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred CccccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 35567889999999999999999999999975
No 261
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=79.88 E-value=2.2 Score=35.55 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=36.8
Q ss_pred CCCH----HHHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~----~~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.| +.|..-++.+|++| .++-||.|+. +.-.+|...||-+ |+++
T Consensus 81 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEV-WldG 132 (279)
T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEV-WLDG 132 (279)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE-EECC
Confidence 5665 56788899999987 5899999999 7999999999984 5544
No 262
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=79.53 E-value=4.9 Score=34.20 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
.+.+.+.+.|+++++.|++++++|+.....+...++.+ ++..
T Consensus 20 ~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l-~~~~ 61 (264)
T COG0561 20 TISPETKEALARLREKGVKVVLATGRPLPDVLSILEEL-GLDG 61 (264)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc-CCCc
Confidence 58889999999999999999999999999899999887 7764
No 263
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=79.51 E-value=4.6 Score=34.27 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=34.3
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
..+...+.++.|+++|++++++|+.....+...++.+ ++.
T Consensus 17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~-~~~ 56 (256)
T TIGR01486 17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKEL-GLE 56 (256)
T ss_pred CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc-CCC
Confidence 3445789999999999999999999999888888886 764
No 264
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=79.29 E-value=14 Score=32.33 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=54.4
Q ss_pred CCCChhHHHHHHHHHHCC-CcEEEEeCCchhhHHHHHHHhhCCcccc---------C--cceEEeCCCCCCCCCCHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFE---------G--LDCFLAGDDVKQKKPDPSIYV 245 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g-~~i~i~Tn~~~~~~~~~l~~~~~l~~~~---------~--fd~v~~~~~~~~~KP~~~~~~ 245 (320)
-+++|||-.+.+.|...| .++..+||+.-.... .|+++++-..+- + +|.++.+....++ ..+.
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~-~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~----~~l~ 269 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP-TLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKG----QSLR 269 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH-HHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcc----cHHH
Confidence 479999999999999987 899999998765443 444432322110 0 3444443322222 2445
Q ss_pred HHHHHcCCCCCCEEEEecCH-hhHHHHH
Q 020871 246 TAAKRLGISEKDCLVVEDSV-IGLQAAT 272 (320)
Q Consensus 246 ~~~~~l~~~~~~~v~VGD~~-~Dv~~a~ 272 (320)
.+++++. -.+.+.|||+. .|.+.-.
T Consensus 270 nil~~~p--~~kfvLVGDsGE~DpeIYa 295 (373)
T COG4850 270 NILRRYP--DRKFVLVGDSGEHDPEIYA 295 (373)
T ss_pred HHHHhCC--CceEEEecCCCCcCHHHHH
Confidence 5666654 35688999998 5876543
No 265
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=78.93 E-value=4.7 Score=34.53 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
...+...+.|++|+++|++++++|+.....+...++.+ +++
T Consensus 24 ~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l-~~~ 64 (271)
T PRK03669 24 YDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTL-GLQ 64 (271)
T ss_pred cCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHh-CCC
Confidence 35567889999999999999999999999888888887 764
No 266
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=78.76 E-value=7 Score=37.10 Aligned_cols=90 Identities=17% Similarity=0.259 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
++...|...+..+-++++++-.+.......+..+++++ ++.+..... -+.+....-++..|+ -++||
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~----i~~~~~~~~-----~e~~~~~~~l~~~G~----~~viG 151 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLD----IVQRSYVTE-----EDARSCVNDLRARGI----GAVVG 151 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCc----eEEEEecCH-----HHHHHHHHHHHHCCC----CEEEC
Confidence 45566666677777899988766544455555555654 222211110 111222233344565 36699
Q ss_pred cCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 263 DSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 263 D~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
|... ...|+.+|+.++++.++..
T Consensus 152 ~~~~-~~~A~~~gl~~ili~s~es 174 (526)
T TIGR02329 152 AGLI-TDLAEQAGLHGVFLYSADS 174 (526)
T ss_pred ChHH-HHHHHHcCCceEEEecHHH
Confidence 9976 6889999999999987633
No 267
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=78.69 E-value=3.8 Score=35.46 Aligned_cols=103 Identities=18% Similarity=0.161 Sum_probs=61.7
Q ss_pred hCCCCCChhHHHHHHHHHHCC-CcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCC-------CCCCCH-HHHH
Q 020871 175 SGTVEPRPGVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK-------QKKPDP-SIYV 245 (320)
Q Consensus 175 ~~~~~~~~g~~~~l~~L~~~g-~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~-------~~KP~~-~~~~ 245 (320)
.+...++|..-++++.+|+.| ++++++||+... .+++.+ . . +|.++.+-|.. ..+|.. ..++
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgslp---dv~~~L-~---~--~dql~~sLdA~~~~~~~~InRP~~~~~~e 158 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLP---DVLEEL-K---L--PDQLYVSLDAPDEKTFRRINRPHKKDSWE 158 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCChH---HHHHHh-c---c--CCEEEEEeccCCHHHHHHhcCCCCcchHH
Confidence 366789999999999999999 799999999983 345554 2 2 46666553321 234532 4555
Q ss_pred HHHHHcCCCC----CCE---EEEecCHhhHH--------HHHHcCCeEEEEeCCCC
Q 020871 246 TAAKRLGISE----KDC---LVVEDSVIGLQ--------AATRAGMACVITYTSST 286 (320)
Q Consensus 246 ~~~~~l~~~~----~~~---v~VGD~~~Dv~--------~a~~aG~~~v~v~~~~~ 286 (320)
.+++.+..-+ .+. +++..+.||-. ..+.+.-..|-++.+..
T Consensus 159 ~ile~L~~~~~~~~~~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd~velk~~~r 214 (296)
T COG0731 159 KILEGLEIFRSEYKGRTVIRTTLVKGINDDEEELEEYAELLERINPDFVELKTYMR 214 (296)
T ss_pred HHHHHHHHhhhcCCCcEEEEEEEeccccCChHHHHHHHHHHHhcCCCeEEEecCcc
Confidence 5555543222 222 24556554322 33445566776665533
No 268
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=78.66 E-value=4.9 Score=33.43 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=36.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.+...+.|++|++.|++++++|+.....+...+..+ ++.
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~-~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKEL-GID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHT-THC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccc-cch
Confidence 57899999999999999999999999999888888876 665
No 269
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=78.62 E-value=2.4 Score=35.32 Aligned_cols=45 Identities=29% Similarity=0.350 Sum_probs=36.8
Q ss_pred CCCH----HHHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~----~~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.| +.|..-++.+|++| .++-||.|+. +.-.+|...||-+ |+++
T Consensus 85 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV-WldG 136 (283)
T PRK09348 85 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEV-WLDG 136 (283)
T ss_pred cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEE-EECC
Confidence 5666 56788899999987 5899999999 7999999999984 5544
No 270
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=77.95 E-value=2.7 Score=35.24 Aligned_cols=45 Identities=29% Similarity=0.362 Sum_probs=36.7
Q ss_pred CCCH----HHHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~----~~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.| +.|..-++.+|++| .++-||.|+. +.-.+|...||-+ |+++
T Consensus 82 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEV-WldG 133 (293)
T TIGR00388 82 KPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEV-WLDG 133 (293)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEE-EECC
Confidence 5665 56777889999987 5899999999 7999999999984 6544
No 271
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=77.26 E-value=5.6 Score=31.65 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc---CCCCCCEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL---GISEKDCL 259 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l---~~~~~~~v 259 (320)
++.+.|..++..+-++++++..+.-.....+..++|++- ...... +++-+...++++ |+ -+
T Consensus 65 Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i----~~~~~~--------~~~e~~~~i~~~~~~G~----~v 128 (176)
T PF06506_consen 65 DILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDI----KIYPYD--------SEEEIEAAIKQAKAEGV----DV 128 (176)
T ss_dssp HHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EE----EEEEES--------SHHHHHHHHHHHHHTT------E
T ss_pred HHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCce----EEEEEC--------CHHHHHHHHHHHHHcCC----cE
Confidence 334444444555778999886655433344445446642 222211 233444555544 54 36
Q ss_pred EEecCHhhHHHHHHcCCeEEEEeCC
Q 020871 260 VVEDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 260 ~VGD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
+||++.. ...|++.|++++.+.++
T Consensus 129 iVGg~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 129 IVGGGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp EEESHHH-HHHHHHTTSEEEESS--
T ss_pred EECCHHH-HHHHHHcCCcEEEEEec
Confidence 6999986 78999999999988665
No 272
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=75.17 E-value=1.8 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=15.5
Q ss_pred HHHHHHHcCCCCCCEEEEecCHhhHHHHH
Q 020871 244 YVTAAKRLGISEKDCLVVEDSVIGLQAAT 272 (320)
Q Consensus 244 ~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~ 272 (320)
.+.+++++|+ .|++||..+|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 3567888887 799999999999865
No 273
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=74.97 E-value=9.6 Score=36.27 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
++...|...+..+-++++++-.+.......+..+++++- +.+.... .-+......-++..|++ ++||
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i----~~~~~~~-----~~e~~~~v~~lk~~G~~----~vvG 161 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI----EQRSYVT-----EEDARGQINELKANGIE----AVVG 161 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce----EEEEecC-----HHHHHHHHHHHHHCCCC----EEEc
Confidence 555666666777778999987665444555555556542 2221110 01122223334445653 6699
Q ss_pred cCHhhHHHHHHcCCeEEEEeCC
Q 020871 263 DSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 263 D~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
|... ...|..+|+.++++.++
T Consensus 162 ~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 162 AGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred CchH-HHHHHHhCCceEEecCH
Confidence 9887 78999999999998765
No 274
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=74.02 E-value=7.1 Score=31.66 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=33.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
.+.+.+.+.|++|++.|++++++|+.....+...++.+
T Consensus 17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 57789999999999999999999999998888877663
No 275
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=72.31 E-value=40 Score=25.49 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH-HHHHHHhhCCccccC-cc-eEEeCCCC-----CCCCCCHHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV-ILCLENLIGMERFEG-LD-CFLAGDDV-----KQKKPDPSIYVTAAKR 250 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~-~~~l~~~~~l~~~~~-fd-~v~~~~~~-----~~~KP~~~~~~~~~~~ 250 (320)
.....+.+++.+...+|-++.++-|+..... .+...++.++..+.. .. .+....+. ...-.++.+...+...
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLAL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHH
Confidence 3445667777777788889999988765322 333344333321110 22 22222221 0011123355667777
Q ss_pred cCCCCCCEEEE----ecCHhhHH---HHHHcCCeEEEEe
Q 020871 251 LGISEKDCLVV----EDSVIGLQ---AATRAGMACVITY 282 (320)
Q Consensus 251 l~~~~~~~v~V----GD~~~Dv~---~a~~aG~~~v~v~ 282 (320)
+++.|.+++++ |.+++=++ .|+..|+.+|.+.
T Consensus 99 ~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 78899999877 56665444 4556799988764
No 276
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.93 E-value=66 Score=30.54 Aligned_cols=29 Identities=31% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCCEEEEecCHhhHHHHHH---cCCeEEEEeC
Q 020871 255 EKDCLVVEDSVIGLQAATR---AGMACVITYT 283 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~~---aG~~~v~v~~ 283 (320)
.-++++||-++..+.+|.. .|..++.+..
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 4589999999999988876 4788777743
No 277
>PTZ00174 phosphomannomutase; Provisional
Probab=68.11 E-value=19 Score=30.32 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~ 214 (320)
++.|...+.|+.+++.|++++++|+.....+...++
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 577888999999999999999999998876655554
No 278
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=67.87 E-value=3.3 Score=31.87 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.1
Q ss_pred cEEEEecCCccccch
Q 020871 68 QALIFDCDGVIIESE 82 (320)
Q Consensus 68 k~viFD~DGTL~d~~ 82 (320)
+.+++|+||||+.+.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999864
No 279
>PLN02887 hydrolase family protein
Probab=67.06 E-value=15 Score=35.43 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
.+.+...+.|++++++|++++++|+.....+...++.+ ++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L-~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMV-DLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-Ccc
Confidence 57788999999999999999999999998888888876 664
No 280
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=67.01 E-value=6.2 Score=32.76 Aligned_cols=45 Identities=31% Similarity=0.370 Sum_probs=35.8
Q ss_pred CCCHH----HHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDPS----IYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~~----~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.|+ .|..-++.+|++| .++=||.|+. |--.+|...||- ||+++
T Consensus 86 KPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWldG 137 (298)
T COG0752 86 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWLDG 137 (298)
T ss_pred cCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEEcC
Confidence 77775 4666789999988 5789999999 788888888988 46654
No 281
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=62.35 E-value=17 Score=30.69 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
..|.+.+++++++++|+.++++|+.....+...++.+ ++.
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~-~~~ 61 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQK-PLL 61 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcC-CCC
Confidence 3467778888999999999999999988888777665 543
No 282
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=61.75 E-value=1e+02 Score=26.32 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=69.9
Q ss_pred HHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhh--CCccccCcceEEeCC------CCCCCCCCHHHHHHHHHHcCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLI--GMERFEGLDCFLAGD------DVKQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~--~l~~~~~fd~v~~~~------~~~~~KP~~~~~~~~~~~l~~~ 254 (320)
.++|+.+.+.|.++.+-++.. .+.+...++.+. |-. +.+++-+ .......+-..+..+.+.++++
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~-----~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~p 196 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNG-----NVILCERGIRTFEKATRNTLDLSAVPVLKKETHLP 196 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-----cEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCC
Confidence 568889999999888777644 444555555441 222 2333322 1223345556677777666653
Q ss_pred CCCEEEEecC--------HhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 255 EKDCLVVEDS--------VIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 255 ~~~~v~VGD~--------~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
+++--|+ ..-..+|..+|..++++..-......+ .+...-+++++|..+++++.
T Consensus 197 ---V~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~------~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 197 ---IIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL------SDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred ---EEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC------CcchhcCCHHHHHHHHHHHh
Confidence 3332444 233457778899887775543333222 23344578999999999865
No 283
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=61.66 E-value=1.3e+02 Score=27.72 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.4
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEE-eCCc
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVC-SAAT 205 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~-Tn~~ 205 (320)
....+|.+.++++.+++.|+++++. ||+.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 4567899999999999999999985 9965
No 284
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=60.43 E-value=5.3 Score=31.33 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=12.3
Q ss_pred cEEEEecCCccccc
Q 020871 68 QALIFDCDGVIIES 81 (320)
Q Consensus 68 k~viFD~DGTL~d~ 81 (320)
+++++|+|+||+-+
T Consensus 2 ~~lvlDLDeTLi~~ 15 (162)
T TIGR02251 2 KTLVLDLDETLVHS 15 (162)
T ss_pred cEEEEcCCCCcCCC
Confidence 57999999999965
No 285
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=60.14 E-value=1.3e+02 Score=26.92 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHC-CCcEEEE-eCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCC-CHHHHHHHHHHcCCCCCCE
Q 020871 182 PGVLRLMDEAKAA-GKKVAVC-SAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP-DPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 182 ~g~~~~l~~L~~~-g~~i~i~-Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP-~~~~~~~~~~~l~~~~~~~ 258 (320)
..+.++|+.|.+. ++++.+. .|++. .-..+.+.+ ..+ +.+... +| ...-|..+++.. .
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~-~~~~i~~~l---~~~---~~v~~~------~~l~~~~~l~ll~~a------~ 260 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPR-GSDIIIEKL---KKY---DNVRLI------EPLGYEEYLSLLKNA------D 260 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HH-HHHHHHHHH---TT----TTEEEE----------HHHHHHHHHHE------S
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCch-HHHHHHHHh---ccc---CCEEEE------CCCCHHHHHHHHhcc------e
Confidence 3677778888776 6655543 33333 233333333 222 112111 22 123455555553 3
Q ss_pred EEEecCHhhHH-HHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 259 LVVEDSVIGLQ-AATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 259 v~VGD~~~Dv~-~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
++||||. .+. .|-..|.++|-+......++.......++ ...+.+++.+.+++.+.
T Consensus 261 ~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl---v~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 261 LVVGDSS-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL---VGTDPEAIIQAIEKALS 317 (346)
T ss_dssp EEEESSH-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE---ETSSHHHHHHHHHHHHH
T ss_pred EEEEcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE---eCCCHHHHHHHHHHHHh
Confidence 6699999 788 99999999998855444444443333333 22456777777766553
No 286
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=59.61 E-value=11 Score=22.28 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
.++...|++.|++.+-+|...+...++.|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 46778899999999999999998888877664
No 287
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.08 E-value=65 Score=25.43 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.++++...+.+.+++++-+. .+..+...+.+ . ..| ....+.+...+.. +++-...+++..+-...++|+||=+
T Consensus 38 ~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l-~-~~y--P~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 38 PDLLRRAEQRGKRIFLLGGS-EEVLEKAAANL-R-RRY--PGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHH-H-HHC--CCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 45666667778888888654 44455444443 1 222 2333333222222 4445666666666666678888888
Q ss_pred H
Q 020871 265 V 265 (320)
Q Consensus 265 ~ 265 (320)
.
T Consensus 111 ~ 111 (172)
T PF03808_consen 111 A 111 (172)
T ss_pred C
Confidence 7
No 288
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=58.67 E-value=51 Score=27.79 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCch-hhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATK-SSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~-~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 259 (320)
.-.++|+.+.+.|.++.+-|+... ..++..++.+ .+-..+ .+=+++++.......-+-..+..+-+++++ .+
T Consensus 101 ~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~~l-~llHC~s~YP~~~e~~NL~~i~~L~~~f~~----~v 175 (241)
T PF03102_consen 101 TNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNEDL-VLLHCVSSYPTPPEDVNLRVIPTLKERFGV----PV 175 (241)
T ss_dssp T-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT--E-EEEEE-SSSS--GGG--TTHHHHHHHHSTS----EE
T ss_pred cCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCChHHcChHHHHHHHHhcCC----CE
Confidence 357899999999999988887653 2333333332 122221 011222222222222222356777778875 46
Q ss_pred EEecCHhhHH---HHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 260 VVEDSVIGLQ---AATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 260 ~VGD~~~Dv~---~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
-+.|+..++. +|...|...| ..-......+++.++ ..-+++++|.++++.+-.
T Consensus 176 G~SDHt~g~~~~~~AvalGA~vI--EKHfTldr~~~g~Dh----~~Sl~p~el~~lv~~ir~ 231 (241)
T PF03102_consen 176 GYSDHTDGIEAPIAAVALGARVI--EKHFTLDRNLKGPDH----KFSLEPDELKQLVRDIRE 231 (241)
T ss_dssp EEEE-SSSSHHHHHHHHTT-SEE--EEEB-S-TTSCSTTG----CCCB-HHHHHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHcCCeEE--EEEEECCCCCCCCCh----hhcCCHHHHHHHHHHHHH
Confidence 7888885543 3445566654 222222222333333 233688999999887643
No 289
>PLN02591 tryptophan synthase
Probab=58.58 E-value=1.1e+02 Score=25.87 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEe-CCch-hhHHHHHHHhhCCccccCcceEEeCCC-CCCCCCCHHHHHHHHHHcCCCCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCS-AATK-SSVILCLENLIGMERFEGLDCFLAGDD-VKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~T-n~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
++++..++...+++.|+....+- -+.. +.+..+.+.. ..| =-+++... .+.....+..+...+++..-..+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---~gF---IY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---EGF---VYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---CCc---EEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 45778899999999998876654 4333 3344444332 222 22333222 22221223334443333322234
Q ss_pred CEEEEecCHh---hHHHHHHcCCeEEEEeCC
Q 020871 257 DCLVVEDSVI---GLQAATRAGMACVITYTS 284 (320)
Q Consensus 257 ~~v~VGD~~~---Dv~~a~~aG~~~v~v~~~ 284 (320)
--++||=+.+ |+..+...|...+.|.+.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 4466776664 889888999999888554
No 290
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=58.48 E-value=6.8 Score=32.77 Aligned_cols=38 Identities=13% Similarity=-0.029 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHcCCC---CCCEEEEecCHhhHHHHHHcCC
Q 020871 239 PDPSIYVTAAKRLGIS---EKDCLVVEDSVIGLQAATRAGM 276 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~---~~~~v~VGD~~~Dv~~a~~aG~ 276 (320)
.+......++++++.. +.-++++||...|-.+.+.+.-
T Consensus 165 ~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~ 205 (235)
T PF02358_consen 165 NKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRE 205 (235)
T ss_dssp -HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHh
Confidence 3567888888888765 6789999999999999888654
No 291
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=58.48 E-value=14 Score=30.46 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCCChhHH-HHHHHHHHCCCcEEEEeCCchh-----hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc
Q 020871 178 VEPRPGVL-RLMDEAKAAGKKVAVCSAATKS-----SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (320)
Q Consensus 178 ~~~~~g~~-~~l~~L~~~g~~i~i~Tn~~~~-----~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (320)
+.++|++. ++...+++.|++-.|+...... .+...++.. |+.-. |...+|+-+- .++| .+...++.+
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~-gi~~~--~P~~~CsL~~-~~~p---~i~~F~~~f 130 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEF-GIEVE--FPKPFCSLEE-NGNP---QIDEFAEYF 130 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhc-Cceee--cCccccccCC-CCCh---hHHHHHHHh
Confidence 46788885 7777788899999998877766 677777775 77766 6777776443 2333 567777778
Q ss_pred CCCCCCEEEEecCH-hhHHHHHHcCCeEE
Q 020871 252 GISEKDCLVVEDSV-IGLQAATRAGMACV 279 (320)
Q Consensus 252 ~~~~~~~v~VGD~~-~Dv~~a~~aG~~~v 279 (320)
|-+ +==|.|.|+. .|+.-.+.+-|.+.
T Consensus 131 GkP-~~ei~v~~~~I~~V~VlR~aPCGsT 158 (217)
T PF02593_consen 131 GKP-KVEIEVENGKIKDVKVLRSAPCGST 158 (217)
T ss_pred CCc-eEEEEecCCcEEEEEEEecCCCccH
Confidence 854 3334455544 57666666655543
No 292
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=58.33 E-value=52 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCCCChhHHHHHHHHHHC-CCc-EEEEeCCch
Q 020871 176 GTVEPRPGVLRLMDEAKAA-GKK-VAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~-g~~-i~i~Tn~~~ 206 (320)
+...+++++.++++.+++. |+. +.+.||+..
T Consensus 115 GEPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 115 GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 4556788999999999986 875 788899864
No 293
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.33 E-value=1.8e+02 Score=27.66 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCCCCEEEEecCHhhHHHHHH---cCCeEEEEe
Q 020871 253 ISEKDCLVVEDSVIGLQAATR---AGMACVITY 282 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a~~---aG~~~v~v~ 282 (320)
..+.++++||-++..+.+|.. .|..++++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 455789999999999988876 477777764
No 294
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=57.16 E-value=1.2e+02 Score=25.76 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=53.4
Q ss_pred CChhHHHHHHHHHHCCCcEE-EEeCCch-hhHHHHHHHhhCCccccCcceEEeCCCCCCCC----CC-HHHHHHHHHHcC
Q 020871 180 PRPGVLRLMDEAKAAGKKVA-VCSAATK-SSVILCLENLIGMERFEGLDCFLAGDDVKQKK----PD-PSIYVTAAKRLG 252 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~-i~Tn~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~K----P~-~~~~~~~~~~l~ 252 (320)
+.+...++++.+++.|+..+ +++-... +.+..+.+.. +. |..+++...+...+ |. .+.+..+.+..+
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~---~g---fiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~ 198 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS---QG---FVYLVSRAGVTGARNRAASALNELVKRLKAYSA 198 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC---CC---CEEEEECCCCCCCcccCChhHHHHHHHHHhhcC
Confidence 45678899999999999866 4554443 2333344332 22 34444433222121 12 222333322222
Q ss_pred CCCCCEEEEecCHh---hHHHHHHcCCeEEEEeCC
Q 020871 253 ISEKDCLVVEDSVI---GLQAATRAGMACVITYTS 284 (320)
Q Consensus 253 ~~~~~~v~VGD~~~---Dv~~a~~aG~~~v~v~~~ 284 (320)
.-++||=+.+ ++..+..+|..++.+.+.
T Consensus 199 ----~pi~vgfGI~~~e~~~~~~~~GADgvVvGSa 229 (256)
T TIGR00262 199 ----KPVLVGFGISKPEQVKQAIDAGADGVIVGSA 229 (256)
T ss_pred ----CCEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 2377887664 888888899998887554
No 295
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=57.02 E-value=17 Score=31.07 Aligned_cols=38 Identities=8% Similarity=-0.013 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHH-CCCcEEEEeCCchhhHHHHHHHh
Q 020871 179 EPRPGVLRLMDEAKA-AGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~-~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
.+.+.+.+.|+.|++ .|+.++++|+.....+...++.+
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 577999999999998 79999999999998887666543
No 296
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=56.31 E-value=3.2 Score=34.86 Aligned_cols=45 Identities=31% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCCH----HHHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~----~~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.| +.|..-++.+|+++ .++-||.|+. +--.+|...||- ||+++
T Consensus 80 KPsP~niq~lYL~SL~~lGId~~~hDIRFVEDnWEsPtLGAwGlGWE-VWldG 131 (284)
T PF02091_consen 80 KPSPDNIQELYLESLEALGIDPKEHDIRFVEDNWESPTLGAWGLGWE-VWLDG 131 (284)
T ss_dssp ES--TTHHHHHHHHHHHCT--CCCS-EEEEEE-EEETTTTEEEEEEE-EEETT
T ss_pred cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccccE-EEECC
Confidence 5555 57888899999977 6899999999 688888888887 46544
No 297
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=55.01 E-value=1.6e+02 Score=26.58 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeC-CchhhHHHHHHHhhCCccccCcceEEeC-----CCCCCCCCCHHHHHHHHHHcCCCCC
Q 020871 183 GVLRLMDEAKAAGKKVAVCSA-ATKSSVILCLENLIGMERFEGLDCFLAG-----DDVKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn-~~~~~~~~~l~~~~~l~~~~~fd~v~~~-----~~~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
-+.++++.+++.++.+.+-.+ .+.......+.+. |. |.++.. ........++..+...++..+++
T Consensus 119 l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~ea-Gv------d~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip-- 189 (368)
T PRK08649 119 LITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEA-GV------DLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP-- 189 (368)
T ss_pred HHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHC-CC------CEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC--
Confidence 357888999998766655232 2222222333333 44 434332 12223334677788888887654
Q ss_pred CEEEEecCH--hhHHHHHHcCCeEEEEeCCC
Q 020871 257 DCLVVEDSV--IGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 257 ~~v~VGD~~--~Dv~~a~~aG~~~v~v~~~~ 285 (320)
|+.||-. .+...+..+|+..|++..+.
T Consensus 190 --VIaG~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 190 --VIVGGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred --EEEeCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 3346644 47777888999999886543
No 298
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=54.84 E-value=50 Score=28.69 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=25.7
Q ss_pred CCCCCChhHHHHHHHHHHCCC-cEEEEeCCch
Q 020871 176 GTVEPRPGVLRLMDEAKAAGK-KVAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~-~i~i~Tn~~~ 206 (320)
+...+.+++.++++.+++.|+ .+.+.||+..
T Consensus 65 GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 65 GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred cccccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 445678889999999999988 8999999864
No 299
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=54.51 E-value=80 Score=26.49 Aligned_cols=44 Identities=23% Similarity=0.407 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHHHHHcCCeEEEEeC
Q 020871 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATRAGMACVITYT 283 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~a~~aG~~~v~v~~ 283 (320)
..|-|...+.++...|++ |++|||.+ .+-......|+..+.+..
T Consensus 71 ~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDALEEEGFGYIIVKA 116 (276)
T ss_dssp TSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHHHHHTT-EEEEETT
T ss_pred CCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHHHHhcCCcEEEEec
Confidence 456777888898888875 89999999 377888999999998754
No 300
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=54.00 E-value=14 Score=30.99 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=27.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
+...++++..++++.+++.|+++.+-||+...
T Consensus 81 GEPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 81 GNPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred CchhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 44456789999999999999999999999864
No 301
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=53.35 E-value=79 Score=27.53 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCch
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
.||+..+-..|+..|.+..++|....
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~~ 87 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDERC 87 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHHH
Confidence 46899999999999999999997654
No 302
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=52.69 E-value=2.2e+02 Score=28.98 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=18.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEe
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCS 202 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~T 202 (320)
......+++.+.+......|..++++.
T Consensus 683 ~~~~~~~~i~~~~~~~e~~g~tvv~v~ 709 (951)
T KOG0207|consen 683 NGCSIPDDILDALTESERKGQTVVYVA 709 (951)
T ss_pred cCCCCchhHHHhhhhHhhcCceEEEEE
Confidence 345566778888888877777766554
No 303
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=52.64 E-value=9.6 Score=29.70 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.2
Q ss_pred CccEEEEecCCccccch
Q 020871 66 SLQALIFDCDGVIIESE 82 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~ 82 (320)
+-..+++|+|.||+.+.
T Consensus 5 ~kl~LVLDLDeTLihs~ 21 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTT 21 (156)
T ss_pred CceEEEEeCCCCccccc
Confidence 45689999999999764
No 304
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=51.62 E-value=39 Score=26.97 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=27.0
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
+...+++++.++++.+++.|+.+.+.||+...
T Consensus 71 GEPll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 71 GEPTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred CcccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 44567788999999999999999999999753
No 305
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=51.40 E-value=1.5e+02 Score=28.35 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=48.8
Q ss_pred hhHHHHH-HHHHHCCCcEEEEeCCchhh-HHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHH---HHHcCCC
Q 020871 182 PGVLRLM-DEAKAAGKKVAVCSAATKSS-VILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTA---AKRLGIS 254 (320)
Q Consensus 182 ~g~~~~l-~~L~~~g~~i~i~Tn~~~~~-~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~---~~~l~~~ 254 (320)
+|+.+-+ ..+++.|.+++++++..... ...+.+.+ .|+. . ++.++...+. .|+- +....+ +...+.+
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~-v--~~~v~p~~E~--~ksl-~~v~~~~~~l~~~~~~ 268 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE-V--SDIVIPDAEA--GKTI-EVANGIWQRLGNEGFT 268 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc-e--EEEEeCCCcc--cCCH-HHHHHHHHHHHhcCCC
Confidence 4654444 34555566777777654321 12222222 1332 2 3333332221 1222 233322 2344554
Q ss_pred C-CCEEEEecCH-hhHHHHHH----cCCeEEEEeC
Q 020871 255 E-KDCLVVEDSV-IGLQAATR----AGMACVITYT 283 (320)
Q Consensus 255 ~-~~~v~VGD~~-~Dv~~a~~----aG~~~v~v~~ 283 (320)
. +-+|.||-+. .|+..+.+ .|++.|.|++
T Consensus 269 r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4 3455699977 59988877 4999998877
No 306
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=51.37 E-value=32 Score=33.67 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
..+...+.|+.|+++|++++++|+.....+....+.+ ++.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~L-gl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNEL-GIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc-CCC
Confidence 4567789999999999999999999998888888776 654
No 307
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.32 E-value=56 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
..+++.++++.+++.|+++.+.||...+
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~ 100 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLEPK 100 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCH
Confidence 4467899999999999999999997653
No 308
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=51.16 E-value=50 Score=29.15 Aligned_cols=84 Identities=18% Similarity=0.233 Sum_probs=48.0
Q ss_pred hCCCCCChhHHHHHHHHHHCCCc-EEEEeCCchh-hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 175 SGTVEPRPGVLRLMDEAKAAGKK-VAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 175 ~~~~~~~~g~~~~l~~L~~~g~~-i~i~Tn~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
.+...+.++..+++..+++.++. +.+-||+..- .....++.. |+... -.|-| --+++.|.++- ..|
T Consensus 67 GGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~A-Gl~rV------NVSLD----sld~e~f~~IT-~~~ 134 (322)
T COG2896 67 GGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEA-GLDRV------NVSLD----SLDPEKFRKIT-GRD 134 (322)
T ss_pred CCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHc-CCcEE------Eeecc----cCCHHHHHHHh-CCC
Confidence 45667889999999999987553 6666687631 122344444 66543 22222 13455666664 222
Q ss_pred CCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 253 ISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
. .++|+ ..+++|..+|+.
T Consensus 135 ~-~~~Vl------~GI~~A~~~Gl~ 152 (322)
T COG2896 135 R-LDRVL------EGIDAAVEAGLT 152 (322)
T ss_pred c-HHHHH------HHHHHHHHcCCC
Confidence 2 23333 677777777765
No 309
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=51.00 E-value=1.9e+02 Score=26.18 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCCcEEEEeC-CchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 184 VLRLMDEAKAAGKKVAVCSA-ATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~Tn-~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
+.+.++++++.++.+.+-.+ .+.....+.+.+. |.+.+. ++....+.....+..++..+..+++.++++ ++ +|
T Consensus 121 ~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eA-Gad~I~-ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP---VI-~G 194 (369)
T TIGR01304 121 LGERIAEVRDSGVITAVRVSPQNAREIAPIVVKA-GADLLV-IQGTLVSAEHVSTSGEPLNLKEFIGELDVP---VI-AG 194 (369)
T ss_pred HHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHC-CCCEEE-EeccchhhhccCCCCCHHHHHHHHHHCCCC---EE-Ee
Confidence 46788889998755444322 1222233344443 554330 010011122222345677788888888763 34 46
Q ss_pred cCH--hhHHHHHHcCCeEEEEeCCC
Q 020871 263 DSV--IGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 263 D~~--~Dv~~a~~aG~~~v~v~~~~ 285 (320)
|-. .|...+..+|+..|++..+.
T Consensus 195 ~V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 195 GVNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCC
Confidence 654 47777778999998865444
No 310
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=50.06 E-value=28 Score=28.83 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCc
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGME 220 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~ 220 (320)
-+.+.+.+|++.|++++.+|+.....+...-+.+ |+.
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l-~v~ 63 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSL-GVQ 63 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchHHHHHHHHHhc-CCC
Confidence 4668889999999999999999987777666665 665
No 311
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=49.51 E-value=97 Score=24.44 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.++++.+..++.+++++- +..+.++...+.+ . ..| ....+.+...+..++. .-..+++..+....++|+||=+
T Consensus 36 ~~ll~~~~~~~~~v~llG-~~~~~~~~~~~~l-~-~~y--p~l~i~g~~~g~~~~~--~~~~i~~~I~~~~pdiv~vglG 108 (171)
T cd06533 36 PALLELAAQKGLRVFLLG-AKPEVLEKAAERL-R-ARY--PGLKIVGYHHGYFGPE--EEEEIIERINASGADILFVGLG 108 (171)
T ss_pred HHHHHHHHHcCCeEEEEC-CCHHHHHHHHHHH-H-HHC--CCcEEEEecCCCCChh--hHHHHHHHHHHcCCCEEEEECC
Confidence 466666777788898884 4455455544333 1 122 2222222112222222 1222556666556678888877
Q ss_pred H
Q 020871 265 V 265 (320)
Q Consensus 265 ~ 265 (320)
.
T Consensus 109 ~ 109 (171)
T cd06533 109 A 109 (171)
T ss_pred C
Confidence 6
No 312
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.72 E-value=1.6e+02 Score=24.70 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCCE
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAATKS--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GISEKDC 258 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~~~~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-~~~~~~~ 258 (320)
.+..++++.+++.|++.+++-|.... .+...++.. +.+ - +++.......+ -+......++++ ...++..
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~---~~~---l-~msv~~~~g~~-~~~~~~~~i~~lr~~~~~~~ 187 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS---PLF---I-YYGLRPATGVP-LPVSVERNIKRVRNLVGNKY 187 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCE---E-EEEeCCCCCCC-chHHHHHHHHHHHHhcCCCC
Confidence 57788999999999999887776442 233333322 222 1 11221111112 122222222222 1222334
Q ss_pred EEEecCH---hhHHHHHHcCCeEEEEeCC
Q 020871 259 LVVEDSV---IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 259 v~VGD~~---~Dv~~a~~aG~~~v~v~~~ 284 (320)
+.+|=+. .++..+..+|..++.+.+.
T Consensus 188 i~v~gGI~~~e~i~~~~~~gaD~vvvGSa 216 (244)
T PRK13125 188 LVVGFGLDSPEDARDALSAGADGVVVGTA 216 (244)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECHH
Confidence 7788877 4888888999998877543
No 313
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=48.56 E-value=50 Score=21.85 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
...-|-...++.+++++++++..+..|-+..-.+..++.||--
T Consensus 23 pE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnv 65 (82)
T cd01766 23 PESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV 65 (82)
T ss_pred cccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccce
Confidence 4445777889999999999999888888888888888888854
No 314
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=48.49 E-value=1.7e+02 Score=24.93 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHH
Q 020871 194 AGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAA 271 (320)
Q Consensus 194 ~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a 271 (320)
.-+.++++|.++...-.++++.. .||+- -..++++ +++ |.. .++.++++ +|..-+..|+..|
T Consensus 35 ~~VEVVllSRNspdTGlRv~nSI~hygL~I---tR~~ft~-----G~~-~~~---Yl~af~v~----LFLSan~~DV~~A 98 (264)
T PF06189_consen 35 PLVEVVLLSRNSPDTGLRVFNSIRHYGLDI---TRAAFTG-----GES-PYP---YLKAFNVD----LFLSANEDDVQEA 98 (264)
T ss_pred CceEEEEEecCCHHHHHHHHHhHHHhCCcc---eeeeecC-----CCC-HHH---HHHHhCCc----eEeeCCHHHHHHH
Confidence 34788999999887777766553 24442 1344444 222 222 34556664 8899999999999
Q ss_pred HHcCCeEEEEeCCC
Q 020871 272 TRAGMACVITYTSS 285 (320)
Q Consensus 272 ~~aG~~~v~v~~~~ 285 (320)
..+|+....+....
T Consensus 99 i~~G~~Aa~v~~~~ 112 (264)
T PF06189_consen 99 IDAGIPAATVLPSP 112 (264)
T ss_pred HHcCCCcEEeecCC
Confidence 99999877665443
No 315
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=48.28 E-value=1.8e+02 Score=25.15 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHCCCcEEE-EeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCC
Q 020871 183 GVLRLMDEAKAAGKKVAV-CSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI 253 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i-~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~ 253 (320)
++...|+++++.|.--+| +||.....++.+++.. ++... +..+ ++...-+.++ +...|++.|+
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~-~~~p~--~NQI----e~hp~~~q~e-l~~~~~~~gI 184 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLA-KVKPA--VNQI----EYHPYLRQPE-LLPFCQRHGI 184 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhc-CCCCc--eEEE----EeccCCCcHH-HHHHHHHcCC
Confidence 888999999999976666 9999999998888774 55433 3333 2333445555 6666677664
No 316
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=48.26 E-value=1.9e+02 Score=25.30 Aligned_cols=117 Identities=9% Similarity=-0.043 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
...++++.|.+.|++++++-++..+ . ...+.+.. . +..+. . .++-+-.-+..++.+.. ++||
T Consensus 198 ~~a~li~~l~~~~~~ivl~~G~~~e-~-~~~~~i~~---~--~~~~~----l-~g~~sL~elaali~~a~------l~I~ 259 (322)
T PRK10964 198 HWRELIGLLAPSGLRIKLPWGAEHE-E-QRAKRLAE---G--FPYVE----V-LPKLSLEQVARVLAGAK------AVVS 259 (322)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHH-H-HHHHHHHc---c--CCcce----e-cCCCCHHHHHHHHHhCC------EEEe
Confidence 5678888888888877654233322 1 12222211 1 11110 1 13333333444444433 5677
Q ss_pred cCHhhHHHHHHcCCeEEEEeCCCCchhhcc--c-ccee---cccccccChhHHHHHHHHhh
Q 020871 263 DSVIGLQAATRAGMACVITYTSSTAEQDFK--D-AIAI---YPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 263 D~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~--~-~~~~---~~~~~~~~~~~l~~~l~~~~ 317 (320)
....-+.+|...|.++|.+-++.......+ . ...+ ...+.++++++..+-+++++
T Consensus 260 nDSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~~~cm~~I~~e~V~~~~~~~l 320 (322)
T PRK10964 260 VDTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSPGKSMADLSAETVFQKLETLI 320 (322)
T ss_pred cCCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCCCcccccCCHHHHHHHHHHHh
Confidence 666668999999999988766554321111 1 1111 23577888888888887765
No 317
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=48.19 E-value=19 Score=36.83 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=37.1
Q ss_pred CCCH----HHHHHHHHHcCCCC--CCEEEEecCH-hhHHHHHHcCCeEEEEeC
Q 020871 238 KPDP----SIYVTAAKRLGISE--KDCLVVEDSV-IGLQAATRAGMACVITYT 283 (320)
Q Consensus 238 KP~~----~~~~~~~~~l~~~~--~~~v~VGD~~-~Dv~~a~~aG~~~v~v~~ 283 (320)
||.| +.|..-++.+|+++ .++-||.|++ +...+|...||-+ |+++
T Consensus 86 kp~p~~~q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwev-w~~g 137 (1000)
T PRK14908 86 KPVPGNPQELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEV-WLDG 137 (1000)
T ss_pred CCCCccHHHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEE-EECC
Confidence 5665 56888899999977 6899999999 7999999999984 6644
No 318
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=48.17 E-value=85 Score=27.76 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCCCCChhHHHHHHHHHHCCC--cEEEEeCCch
Q 020871 176 GTVEPRPGVLRLMDEAKAAGK--KVAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~--~i~i~Tn~~~ 206 (320)
+...++++..++++.+++.+. .+.+.||+..
T Consensus 70 GEPllr~dl~~li~~i~~~~~l~~i~itTNG~l 102 (329)
T PRK13361 70 GEPLVRRGCDQLVARLGKLPGLEELSLTTNGSR 102 (329)
T ss_pred cCCCccccHHHHHHHHHhCCCCceEEEEeChhH
Confidence 445678899999999998754 6889999864
No 319
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=47.44 E-value=71 Score=24.14 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCC-CEEEEecC----H---hhHHHHHHcCCeEEEEeCCC
Q 020871 236 QKKPDPSIYVTAAKRLGISEK-DCLVVEDS----V---IGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 236 ~~KP~~~~~~~~~~~l~~~~~-~~v~VGD~----~---~Dv~~a~~aG~~~v~v~~~~ 285 (320)
...|.++-+...++.+|++++ .+|+.+++ . .-.-+++.+|..-|.+.+|+
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG 132 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGG 132 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCC
Confidence 345677889999999999875 56666653 1 23335566788766665554
No 320
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.21 E-value=1.6e+02 Score=26.94 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCChhHHHHHHHHHH-CCCcEEEE-eCCchh-hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC-CC
Q 020871 179 EPRPGVLRLMDEAKA-AGKKVAVC-SAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG-IS 254 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~-~g~~i~i~-Tn~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~-~~ 254 (320)
...+|+.+.|.+... .+++++.- |..++. ....-+++. .-+. ||.++ .|.-++.|-+...|.++.+--+ +.
T Consensus 139 TFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f-Kke~---fdvII-vDTSGRh~qe~sLfeEM~~v~~ai~ 213 (483)
T KOG0780|consen 139 TFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF-KKEN---FDVII-VDTSGRHKQEASLFEEMKQVSKAIK 213 (483)
T ss_pred ccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH-HhcC---CcEEE-EeCCCchhhhHHHHHHHHHHHhhcC
Confidence 467788888777433 36666652 222221 111122221 2222 57555 4556777888888888877554 68
Q ss_pred CCCEEEEecCHhhHHHHH
Q 020871 255 EKDCLVVEDSVIGLQAAT 272 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~ 272 (320)
|+++++|-|....-.+..
T Consensus 214 Pd~vi~VmDasiGQaae~ 231 (483)
T KOG0780|consen 214 PDEIIFVMDASIGQAAEA 231 (483)
T ss_pred CCeEEEEEeccccHhHHH
Confidence 999999999986555443
No 321
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.07 E-value=22 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=21.1
Q ss_pred HHHHHHcCCCCCCEEEEecCHhhHHHHHH
Q 020871 245 VTAAKRLGISEKDCLVVEDSVIGLQAATR 273 (320)
Q Consensus 245 ~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~ 273 (320)
+.+++.+|+ ++++||...|+++.+.
T Consensus 8 qQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 8 QQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 567888887 8999999999998753
No 322
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.78 E-value=18 Score=24.37 Aligned_cols=18 Identities=28% Similarity=0.733 Sum_probs=14.9
Q ss_pred ccEEEEecCCccccchHH
Q 020871 67 LQALIFDCDGVIIESEHL 84 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (320)
.-.++.+-|||.+|++..
T Consensus 40 ~~~lvL~eDGT~Vd~Eey 57 (78)
T cd06539 40 LVTLVLEEDGTVVDTEEF 57 (78)
T ss_pred CcEEEEeCCCCEEccHHH
Confidence 567999999999987653
No 323
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.64 E-value=1.2e+02 Score=22.26 Aligned_cols=89 Identities=12% Similarity=0.016 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.-+...|+..|+++..+-...+ .+...+...... .|.+..|.......+...-+...+++.+.+ .-.+++|=.
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~vp--~e~~~~~a~~~~----~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~ 89 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQT--PEEIVEAAIQED----VDVIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGI 89 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCCC--HHHHHHHHHHcC----CCEEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECC
Confidence 3344458889998876654322 233333321111 355655544444444444444445555443 444666643
Q ss_pred -Hh-hHHHHHHcCCeEEE
Q 020871 265 -VI-GLQAATRAGMACVI 280 (320)
Q Consensus 265 -~~-Dv~~a~~aG~~~v~ 280 (320)
+. +.+.+.++|+..+.
T Consensus 90 ~~~~~~~~~~~~G~d~~~ 107 (122)
T cd02071 90 IPPEDYELLKEMGVAEIF 107 (122)
T ss_pred CCHHHHHHHHHCCCCEEE
Confidence 33 67788899987543
No 324
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.61 E-value=18 Score=24.53 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=14.9
Q ss_pred ccEEEEecCCccccchHH
Q 020871 67 LQALIFDCDGVIIESEHL 84 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (320)
.-.|+.+-|||.+|++..
T Consensus 39 ~~~lvLeeDGT~Vd~Eey 56 (81)
T cd06537 39 VLTLVLEEDGTAVDSEDF 56 (81)
T ss_pred ceEEEEecCCCEEccHHH
Confidence 467999999999987643
No 325
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=45.57 E-value=40 Score=27.83 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCCCChh-HHHHHHHHHHCCCcEEEEeCCchh
Q 020871 176 GTVEPRPG-VLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 176 ~~~~~~~g-~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
+...+.++ +.++++.+|+.|+.+++-||+...
T Consensus 47 GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 47 GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 34457777 589999999999999999999653
No 326
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=45.42 E-value=50 Score=33.65 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l 219 (320)
++-+.....+++|.+++++.+.||+.+-....-+.++. |+
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeC-gm 744 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKEC-GM 744 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcc-cc
Confidence 57788899999999999999999998866555555554 54
No 327
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=45.04 E-value=48 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=26.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCch
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
+...++|+..++++.+++.|+.+.+.||+..
T Consensus 71 GEPll~~~~~~il~~~~~~g~~~~i~TNG~l 101 (378)
T PRK05301 71 GEPLLRKDLEELVAHARELGLYTNLITSGVG 101 (378)
T ss_pred CccCCchhHHHHHHHHHHcCCcEEEECCCcc
Confidence 4556789999999999999999999999863
No 328
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=44.97 E-value=24 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCCccEEEEecCCccccch
Q 020871 64 SQSLQALIFDCDGVIIESE 82 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~ 82 (320)
...+++|-||+|.||....
T Consensus 9 l~~i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYK 27 (343)
T ss_pred cccCCEEEECccccccccC
Confidence 4579999999999998764
No 329
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=44.88 E-value=78 Score=26.04 Aligned_cols=77 Identities=25% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCcEEEEeCCchhhHHH--HHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC---HhhHH
Q 020871 195 GKKVAVCSAATKSSVIL--CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS---VIGLQ 269 (320)
Q Consensus 195 g~~i~i~Tn~~~~~~~~--~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~---~~Dv~ 269 (320)
|.++++++.+++.+..- .+... |. .+++ .--|-+..++.++.++|++-+++-+|-=+ .+++.
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~--------~~----~~~v-~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~~~l~ 134 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRK--------FS----CEEV-EIIPGISSVQLAAARLGWPLQDTEVISLHGRPVELLR 134 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHh--------cC----ccce-EEecChhHHHHHHHHhCCChHHeEEEEecCCCHHHHH
Confidence 78899988888754321 11111 11 1111 13477789999999999988877666433 45666
Q ss_pred HHHHcCCeEEEEeCC
Q 020871 270 AATRAGMACVITYTS 284 (320)
Q Consensus 270 ~a~~aG~~~v~v~~~ 284 (320)
....-|-..++....
T Consensus 135 ~~~~~~~~~vil~~~ 149 (210)
T COG2241 135 PLLENGRRLVILTPD 149 (210)
T ss_pred HHHhCCceEEEeCCC
Confidence 565555555555443
No 330
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=44.54 E-value=52 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEe
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLA 230 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~ 230 (320)
+.++ ++++|++++++|+.....+...++.+ ++.. .+.+++
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l-~l~~---~~~~I~ 61 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKL-NLPS---PDVLIA 61 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhC-CCCC---CCEEEE
Confidence 4555 57889999999999999999898886 6653 344444
No 331
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=44.27 E-value=40 Score=24.66 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+++.+.++.++++|.++..+|+.....+
T Consensus 57 G~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 57 GETADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 3556899999999999999999999866534
No 332
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=43.56 E-value=21 Score=23.87 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=14.7
Q ss_pred ccEEEEecCCccccchHH
Q 020871 67 LQALIFDCDGVIIESEHL 84 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (320)
.-.|+++-|||.+|++..
T Consensus 38 ~~~l~L~eDGT~VddEey 55 (74)
T smart00266 38 PVTLVLEEDGTIVDDEEY 55 (74)
T ss_pred CcEEEEecCCcEEccHHH
Confidence 457899999999987653
No 333
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=43.03 E-value=2.3e+02 Score=24.70 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchh--hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKS--SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~--~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 260 (320)
...++++.|.++|++++++.++..+ ..+.+.+.. .. . .++ ++-+-.-+..++++.. ++
T Consensus 199 ~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~---~~---~--~l~------g~~sL~el~ali~~a~------l~ 258 (319)
T TIGR02193 199 RWRELARLLLARGLQIVLPWGNDAEKQRAERIAEAL---PG---A--VVL------PKMSLAEVAALLAGAD------AV 258 (319)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhC---CC---C--eec------CCCCHHHHHHHHHcCC------EE
Confidence 6678888887778877766343322 222222211 11 1 111 2333333334444332 55
Q ss_pred EecCHhhHHHHHHcCCeEEEEeCCCCchhhc---c-ccce-ecccccccChhHHHHHHHHhh
Q 020871 261 VEDSVIGLQAATRAGMACVITYTSSTAEQDF---K-DAIA-IYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 261 VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l---~-~~~~-~~~~~~~~~~~~l~~~l~~~~ 317 (320)
||....-+-.|...|.+++.+-++... ..+ . .... ..++...++++++.+-+.+++
T Consensus 259 I~~DSgp~HlAaa~g~P~i~lfg~t~p-~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGVDTGLTHLAAALDKPTVTLYGATDP-GRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EeCCChHHHHHHHcCCCEEEEECCCCH-hhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 666666688999999999988765443 222 1 1112 233477888888888777653
No 334
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.55 E-value=36 Score=24.97 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+++.++++.+|++|.++..+|+.....+
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 58 GETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 4567899999999999999999999876544
No 335
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=42.06 E-value=73 Score=25.72 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=51.2
Q ss_pred CCCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC-----------CCCCCCCHHHHH
Q 020871 177 TVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-----------VKQKKPDPSIYV 245 (320)
Q Consensus 177 ~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-----------~~~~KP~~~~~~ 245 (320)
......|+..+|+.||+-++.+-..+.... .+..-+..-+++.| |.++.|+- ....|+.|..++
T Consensus 27 s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~--q~~FPqtme~L~~Y---DaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~ 101 (254)
T COG5426 27 SVTYHEGADPLLKALRGGEYDVTYMPAHDA--QEKFPQTMEGLDAY---DAIVLSDIGSNTLLLQPATWYHSKIVPNRLK 101 (254)
T ss_pred ceecccCchHHHHHHhCCCcceEEechHHH--HHhcchhhhhhccc---ceEEEeecCCceeeccccceeecccCccHHH
Confidence 356778999999999999999888764332 22222333356665 88887643 224566666666
Q ss_pred HHHHHcCCCCCCEEEEecCH
Q 020871 246 TAAKRLGISEKDCLVVEDSV 265 (320)
Q Consensus 246 ~~~~~l~~~~~~~v~VGD~~ 265 (320)
.+....+ +-.-.+|||--.
T Consensus 102 likdyV~-~GGGLLMiGGY~ 120 (254)
T COG5426 102 LIKDYVE-NGGGLLMIGGYL 120 (254)
T ss_pred HHHHHHh-cCCcEEEEccEE
Confidence 5544321 223456666544
No 336
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=41.11 E-value=1.7e+02 Score=24.79 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.++++...++|++++++ ++....++...+.+ .- .| +.+. .+...+... ++-...+++..+....++++||=+
T Consensus 95 ~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l-~~-~y-~l~i--~g~~~Gyf~--~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 95 EALMARAGKEGTPVFLV-GGKPEVLAQTEAKL-RT-QW-NVNI--VGSQDGYFT--PEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHH-HH-Hh-CCEE--EEEeCCCCC--HHHHHHHHHHHHhcCCCEEEEECC
Confidence 34555556778899988 55555555555554 21 12 2222 221223333 334456777777777889999987
Q ss_pred H-h-hHHHHH
Q 020871 265 V-I-GLQAAT 272 (320)
Q Consensus 265 ~-~-Dv~~a~ 272 (320)
. . ..-+.+
T Consensus 167 ~PkQE~~~~~ 176 (243)
T PRK03692 167 SPKQEIFMRD 176 (243)
T ss_pred CcHHHHHHHH
Confidence 5 2 444444
No 337
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=40.90 E-value=58 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCch
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
+...++|+..++++.+++.|+.+.+.||+..
T Consensus 62 GEPll~~~~~~ii~~~~~~g~~~~l~TNG~l 92 (358)
T TIGR02109 62 GEPLARPDLVELVAHARRLGLYTNLITSGVG 92 (358)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4556789999999999999999999999863
No 338
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=40.86 E-value=2.3e+02 Score=24.11 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCcEEEEeCC--chhhHHHHHHHhh--CCccccCcceEEeC-CCCCCC-----CCCHHHHHHHHHHcCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAA--TKSSVILCLENLI--GMERFEGLDCFLAG-DDVKQK-----KPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~--~~~~~~~~l~~~~--~l~~~~~fd~v~~~-~~~~~~-----KP~~~~~~~~~~~l~~~ 254 (320)
.++|+.+.+.|.++.+-++. +.+.+...++.+. |-. +.+++- +-...+ -.+-..+..+.+.++++
T Consensus 112 ~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~-----~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lP 186 (250)
T PRK13397 112 FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKS-----NIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLP 186 (250)
T ss_pred HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC-----eEEEEccccCCCCCccccccCHHHHHHHHHHhCCC
Confidence 68889998888887766652 2344444444431 222 233332 211112 34445566666667754
Q ss_pred ----CCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 255 ----EKDCLVVEDSV---IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 255 ----~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
++.. .|.+. .=..+|..+|...+++..-......+. +.-..+++++|.++++++-+
T Consensus 187 Vivd~SHs--~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~s------D~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 187 IIVDVSHS--TGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALS------DAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred eEECCCCC--CcccchHHHHHHHHHHhCCCEEEEEecCCcccccC------chhhhCCHHHHHHHHHHhcc
Confidence 3322 22211 224667788999888755444333222 22345789999999998754
No 339
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.69 E-value=1.5e+02 Score=27.42 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=60.8
Q ss_pred CCChhHHHHHHHHHHC-CCcEEEEe-CCc-hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC-CC
Q 020871 179 EPRPGVLRLMDEAKAA-GKKVAVCS-AAT-KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG-IS 254 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~-g~~i~i~T-n~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~-~~ 254 (320)
..+|.+.+.|+.|-+. |++++-.. +.+ .+.+...++.. .... +|.++ .|--++-.-+.+.+.++.+-.. +.
T Consensus 138 ~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a-k~~~---~DvvI-vDTAGRl~ide~Lm~El~~Ik~~~~ 212 (451)
T COG0541 138 TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA-KEEG---YDVVI-VDTAGRLHIDEELMDELKEIKEVIN 212 (451)
T ss_pred cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH-HHcC---CCEEE-EeCCCcccccHHHHHHHHHHHhhcC
Confidence 4789999999998765 66666552 222 23344455554 3333 46554 3455555567777777766554 58
Q ss_pred CCCEEEEecCHhhHHHHH-------HcCCeEEEE
Q 020871 255 EKDCLVVEDSVIGLQAAT-------RAGMACVIT 281 (320)
Q Consensus 255 ~~~~v~VGD~~~Dv~~a~-------~aG~~~v~v 281 (320)
|.++++|=|+...=.+.. ..|+..|.+
T Consensus 213 P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIl 246 (451)
T COG0541 213 PDETLLVVDAMIGQDAVNTAKAFNEALGITGVIL 246 (451)
T ss_pred CCeEEEEEecccchHHHHHHHHHhhhcCCceEEE
Confidence 999999999985322222 256766655
No 340
>PF12522 UL73_N: Cytomegalovirus glycoprotein N terminal; InterPro: IPR021003 This domain family is found in viruses, and is approximately 30 amino acids in length. The signature is found in association with PF03554 from PFAM. This family is an envelope glycoprotein of (Human herpesvirus 5) [].
Probab=40.25 E-value=32 Score=17.57 Aligned_cols=19 Identities=47% Similarity=0.471 Sum_probs=9.7
Q ss_pred EEeeeeccccccccccccc
Q 020871 6 ILSQTATLSSSSSSTTTTA 24 (320)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (320)
.++.++..++.++++.+++
T Consensus 5 vlSv~~gSs~n~sSTsts~ 23 (27)
T PF12522_consen 5 VLSVAAGSSGNNSSTSTSA 23 (27)
T ss_pred EEEEEeccccCCccccccc
Confidence 3555555555555554443
No 341
>TIGR03586 PseI pseudaminic acid synthase.
Probab=40.04 E-value=2.3e+02 Score=25.23 Aligned_cols=118 Identities=14% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCcEEEEeCCch-hhHHHHHHHh--hCCccccCcceEEeCCC----CCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATK-SSVILCLENL--IGMERFEGLDCFLAGDD----VKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~-~~~~~~l~~~--~~l~~~~~fd~v~~~~~----~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
.++|+.+.+.|.++.+-|+... +.+...++.+ .|.. +.++.-+. .....-+-..+..+-+.++++
T Consensus 124 ~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~-----~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~p--- 195 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCK-----DLVLLKCTSSYPAPLEDANLRTIPDLAERFNVP--- 195 (327)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCC-----cEEEEecCCCCCCCcccCCHHHHHHHHHHhCCC---
Confidence 6899999999999988777642 2222233322 1221 23332222 222222334555565666642
Q ss_pred EEEEecCHhhHHHH---HHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 258 CLVVEDSVIGLQAA---TRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a---~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
|-+-|+..++.++ -.+|.. ++..-......++.++ ...-+++++|.++++++-
T Consensus 196 -VG~SDHt~G~~~~~aAva~GA~--iIEkH~tld~~l~G~D----~~~Sl~p~e~~~lv~~ir 251 (327)
T TIGR03586 196 -VGLSDHTLGILAPVAAVALGAC--VIEKHFTLDRSDGGVD----SAFSLEPDEFKALVKEVR 251 (327)
T ss_pred -EEeeCCCCchHHHHHHHHcCCC--EEEeCCChhhcCCCCC----hhccCCHHHHHHHHHHHH
Confidence 4356776555443 345665 3433333333333333 334568899999988764
No 342
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=39.71 E-value=2e+02 Score=25.60 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=52.0
Q ss_pred HHHHHHHHHHC-CCc-EEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC-CCCCCEEE
Q 020871 184 VLRLMDEAKAA-GKK-VAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG-ISEKDCLV 260 (320)
Q Consensus 184 ~~~~l~~L~~~-g~~-i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~-~~~~~~v~ 260 (320)
+..+++.|++. ++. ..++|+........+++. +++..- ++..+.+......+-....+..+.+.+. ..|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-FHLPPD--YDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-cCCCCC--eeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35677777775 444 355777766666666666 477521 2322322111111111222223333222 34655667
Q ss_pred EecCHh---hHHHHHHcCCeEEEEeCCC
Q 020871 261 VEDSVI---GLQAATRAGMACVITYTSS 285 (320)
Q Consensus 261 VGD~~~---Dv~~a~~aG~~~v~v~~~~ 285 (320)
.||... -..+|...|++.+.+..+.
T Consensus 93 ~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 93 QGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred eCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 788764 4556677899988876553
No 343
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=39.57 E-value=2.6e+02 Score=24.49 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=52.4
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEe-CCCCC---CCCCCHHHHHHHHHHcCCCCCCEEE
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLA-GDDVK---QKKPDPSIYVTAAKRLGISEKDCLV 260 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~-~~~~~---~~KP~~~~~~~~~~~l~~~~~~~v~ 260 (320)
.++++++|+.|+++.... .+.+.. ..+++. |.+ .++. +.+-+ ...+....+..+.+..+++ ++.
T Consensus 99 ~~~i~~lk~~g~~v~~~v-~s~~~a-~~a~~~-GaD------~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---via 166 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVV-ASVALA-KRMEKA-GAD------AVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIA 166 (307)
T ss_pred HHHHHHHHHcCCEEEEEc-CCHHHH-HHHHHc-CCC------EEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEE
Confidence 358889999998765433 233333 334443 544 3332 32221 1224556667777766653 666
Q ss_pred EecCH--hhHHHHHHcCCeEEEEeCC
Q 020871 261 VEDSV--IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 261 VGD~~--~Dv~~a~~aG~~~v~v~~~ 284 (320)
-|+=. .|+..+...|..+|++.+.
T Consensus 167 aGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 167 AGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred ECCCCCHHHHHHHHHcCCCEeecchH
Confidence 66544 5788888899999987554
No 344
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=39.42 E-value=1.5e+02 Score=27.31 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=32.5
Q ss_pred cCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCC
Q 020871 74 CDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPS 140 (320)
Q Consensus 74 ~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 140 (320)
+|+++...+......+.+.++++|++..-. ..........+..+...+.++|++.
T Consensus 69 iD~Vv~g~E~~l~~glad~~~~~Gip~~Gp------------~~~aa~le~dK~~~K~~l~~~gIpt 123 (426)
T PRK13789 69 FDLIVVGPEDPLVAGFADWAAELGIPCFGP------------DSYCAQVEGSKHFAKSLMKEAKIPT 123 (426)
T ss_pred CCEEEECCchHHHHHHHHHHHHcCCCcCCC------------HHHHHHHHcCHHHHHHHHHHcCCCC
Confidence 455555555555566667777788764221 1112233456667777888888764
No 345
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=39.23 E-value=1.4e+02 Score=25.89 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchh
Q 020871 241 PSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQ 289 (320)
Q Consensus 241 ~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~ 289 (320)
..=+.+++++.|. + .+.| |+..|+....-.|..+|++..|...++
T Consensus 227 s~rL~eiA~~~g~-~--aylI-d~~~ei~~~w~~~~~~VGvTAGAStPd 271 (294)
T COG0761 227 SNRLAEIAKRHGK-P--AYLI-DDAEEIDPEWLKGVKTVGVTAGASTPD 271 (294)
T ss_pred HHHHHHHHHHhCC-C--eEEe-CChHhCCHHHhcCccEEEEecCCCCCH
Confidence 3356778888887 3 3444 566778877777888899988876544
No 346
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=39.21 E-value=1.2e+02 Score=28.12 Aligned_cols=30 Identities=7% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCCChh-HHHHHHHHHHC--CCcEEEEeCCch
Q 020871 177 TVEPRPG-VLRLMDEAKAA--GKKVAVCSAATK 206 (320)
Q Consensus 177 ~~~~~~g-~~~~l~~L~~~--g~~i~i~Tn~~~ 206 (320)
...+.++ +.+++..+++. |+.+.+.||+..
T Consensus 89 EPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~ 121 (442)
T TIGR01290 89 DPLANIGKTFQTLELVARQLPDVKLCLSTNGLM 121 (442)
T ss_pred CcccCccccHHHHHHHHHhcCCCeEEEECCCCC
Confidence 3344543 67888888887 899999999973
No 347
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.00 E-value=53 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+++.+.++.++++|.++..+|+.....+
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 58 GNTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CCChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 3557889999999999999999999876543
No 348
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=38.97 E-value=36 Score=28.12 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCcEEEEeCCchhhHHHHH
Q 020871 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCL 213 (320)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l 213 (320)
+.++|..|++. +.++++|+++..-....+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl 29 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL 29 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH
Confidence 46889999986 999999999876555444
No 349
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.16 E-value=2.1e+02 Score=22.84 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.++++...++|.+++++- +..+.++...+.+ . ..| ....+.+. .+.-.| +--..+++..+-...++++||=+
T Consensus 38 ~~l~~~~~~~~~~vfllG-~~~~v~~~~~~~l-~-~~y--P~l~i~g~-~g~f~~--~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLYG-GKPDVLQQLKVKL-I-KEY--PKLKIVGA-FGPLEP--EERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHcCCeEEEEC-CCHHHHHHHHHHH-H-HHC--CCCEEEEE-CCCCCh--HHHHHHHHHHHHcCCCEEEEEcC
Confidence 455666667788888884 4444455555444 1 122 12222222 222233 23345566666566678888877
Q ss_pred H
Q 020871 265 V 265 (320)
Q Consensus 265 ~ 265 (320)
.
T Consensus 110 ~ 110 (177)
T TIGR00696 110 C 110 (177)
T ss_pred C
Confidence 6
No 350
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.02 E-value=2.2e+02 Score=23.32 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=37.3
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCC-HHHHHHHHHHcCCCCCCEEEEec
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPD-PSIYVTAAKRLGISEKDCLVVED 263 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~-~~~~~~~~~~l~~~~~~~v~VGD 263 (320)
+++.|.+.++ +.|+.+.+.+......+.+ .|+.-+ .... .-|+ .+.+..++++++.+ +.||=
T Consensus 3 ~~~~l~~~~~-~~v~r~~~~~~~~~~~~a~~~gGi~~i---Evt~-------~~~~~~~~i~~l~~~~~~~----~~iGa 67 (206)
T PRK09140 3 LMQPFTKLPL-IAILRGITPDEALAHVGALIEAGFRAI---EIPL-------NSPDPFDSIAALVKALGDR----ALIGA 67 (206)
T ss_pred hhhHHHhCCE-EEEEeCCCHHHHHHHHHHHHHCCCCEE---EEeC-------CCccHHHHHHHHHHHcCCC----cEEeE
Confidence 3445555533 5566666665555555554 233321 2111 1111 22445555555421 33444
Q ss_pred CH----hhHHHHHHcCCeEEEE
Q 020871 264 SV----IGLQAATRAGMACVIT 281 (320)
Q Consensus 264 ~~----~Dv~~a~~aG~~~v~v 281 (320)
+. .++..|..+|..++..
T Consensus 68 GTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 68 GTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred EecCCHHHHHHHHHcCCCEEEC
Confidence 33 3666677777776554
No 351
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=37.73 E-value=51 Score=27.63 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCCCCChhH-HHHHHHHHHCCCcEEEEeCCch
Q 020871 176 GTVEPRPGV-LRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 176 ~~~~~~~g~-~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
+...++++. .++++.+++.|+++.+.||+..
T Consensus 79 GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 79 GEAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 445567784 5999999999999999999974
No 352
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=37.71 E-value=22 Score=28.62 Aligned_cols=73 Identities=22% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHH-------HHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVIL-------CLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL 251 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~-------~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l 251 (320)
.+.| .+|..++++|++++++.+.-...... ..+.+ + . .||.+++-++ .-..-+.++
T Consensus 105 ElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~--l-~--~f~~i~aqs~---------~da~r~~~l 167 (186)
T PF04413_consen 105 ELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPL--L-S--RFDRILAQSE---------ADAERFRKL 167 (186)
T ss_dssp ---H---HHHHH-----S-EEEEEE--------------HHHHHH--G-G--G-SEEEESSH---------HHHHHHHTT
T ss_pred ccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHH--H-H--hCCEEEECCH---------HHHHHHHHc
Confidence 4555 67788999999999986554322111 12221 1 2 2687776533 234556789
Q ss_pred CCCCCCEEEEecCHhhH
Q 020871 252 GISEKDCLVVEDSVIGL 268 (320)
Q Consensus 252 ~~~~~~~v~VGD~~~Dv 268 (320)
|++++++...||---|.
T Consensus 168 G~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 168 GAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp T-S--SEEE---GGG--
T ss_pred CCCcceEEEeCcchhcc
Confidence 99999999999865553
No 353
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=37.70 E-value=29 Score=23.49 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.0
Q ss_pred CccEEEEecCCccccchHH
Q 020871 66 SLQALIFDCDGVIIESEHL 84 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~ 84 (320)
..-.|+++-|||.+|++..
T Consensus 39 ~~~~lvL~eDGTeVddEeY 57 (78)
T cd01615 39 APVTLVLEEDGTEVDDEEY 57 (78)
T ss_pred CCeEEEEeCCCcEEccHHH
Confidence 3456999999999987653
No 354
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=37.50 E-value=32 Score=28.66 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=7.4
Q ss_pred EEecCCccccch
Q 020871 71 IFDCDGVIIESE 82 (320)
Q Consensus 71 iFD~DGTL~d~~ 82 (320)
+||+||||.+..
T Consensus 1 ~lDyDGTL~p~~ 12 (235)
T PF02358_consen 1 FLDYDGTLAPIV 12 (235)
T ss_dssp EEE-TTTSS---
T ss_pred CcccCCccCCCC
Confidence 689999998753
No 355
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.44 E-value=2.4e+02 Score=23.44 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=61.0
Q ss_pred HHHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCH-HHHHHHHHHcCCCCCCEEEEe
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDP-SIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~-~~~~~~~~~l~~~~~~~v~VG 262 (320)
++++.|.+.++ +.|+.+.+.+......+.+ .|+..+ +..+ .-|.. +.+..+.++++-...+ +.||
T Consensus 7 ~~~~~l~~~~v-i~Vvr~~~~~~a~~~~~al~~gGi~~i---EiT~-------~tp~a~~~i~~l~~~~~~~~p~-~~vG 74 (222)
T PRK07114 7 AVLTAMKATGM-VPVFYHADVEVAKKVIKACYDGGARVF---EFTN-------RGDFAHEVFAELVKYAAKELPG-MILG 74 (222)
T ss_pred HHHHHHHhCCE-EEEEEcCCHHHHHHHHHHHHHCCCCEE---EEeC-------CCCcHHHHHHHHHHHHHhhCCC-eEEe
Confidence 56677777755 7777777777777766665 244432 3222 22332 2344444444432223 3466
Q ss_pred cCH----hhHHHHHHcCCeEEEEeCCCCchhhcccc-ceecccc-cccChhHHHHHHH
Q 020871 263 DSV----IGLQAATRAGMACVITYTSSTAEQDFKDA-IAIYPDL-SNVRLKDLELLLQ 314 (320)
Q Consensus 263 D~~----~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~-~~~~~~~-~~~~~~~l~~~l~ 314 (320)
=+. .+++.|..+|..++. ++....+.++.+ ..-++-+ ...++.|+...++
T Consensus 75 aGTVl~~e~a~~a~~aGA~FiV--sP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~ 130 (222)
T PRK07114 75 VGSIVDAATAALYIQLGANFIV--TPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEE 130 (222)
T ss_pred eEeCcCHHHHHHHHHcCCCEEE--CCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 554 478888889998765 333443333221 1112222 2346777776665
No 356
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=37.05 E-value=30 Score=23.54 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.7
Q ss_pred ccEEEEecCCccccchHH
Q 020871 67 LQALIFDCDGVIIESEHL 84 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (320)
.-.|+++-|||.+|++..
T Consensus 42 ~~~lvL~eDGT~VddEey 59 (80)
T cd06536 42 PITLVLAEDGTIVEDEDY 59 (80)
T ss_pred ceEEEEecCCcEEccHHH
Confidence 457899999999987653
No 357
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=36.14 E-value=39 Score=31.38 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCCccEEEEecCCccccch
Q 020871 64 SQSLQALIFDCDGVIIESE 82 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~ 82 (320)
...+++|-||+|-||+...
T Consensus 9 l~~i~~iGFDmDyTLa~Y~ 27 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYK 27 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-
T ss_pred cccCCEEEECcccchhhcC
Confidence 3479999999999998664
No 358
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.13 E-value=2.7e+02 Score=23.70 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=60.1
Q ss_pred CChhHHHHHHHHHHCCCcEEE-EeCCchh-hHHHHHHHhhCCccccCcceEEeCCC-CCC--CCC-CHH-HHHHHHHHcC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAV-CSAATKS-SVILCLENLIGMERFEGLDCFLAGDD-VKQ--KKP-DPS-IYVTAAKRLG 252 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i-~Tn~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~--~KP-~~~-~~~~~~~~l~ 252 (320)
++.+..+++..+++.|+..+. +|.+... .+..+.+.. ..| =.+++... ++. ..| ... .+..+.+..+
T Consensus 127 p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s---~gf---IY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 200 (258)
T PRK13111 127 PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA---SGF---VYYVSRAGVTGARSADAADLAELVARLKAHTD 200 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC---CCc---EEEEeCCCCCCcccCCCccHHHHHHHHHhcCC
Confidence 456788899999999988766 7766643 333333322 122 11222211 222 222 222 3333333222
Q ss_pred CCCCCEEEEecCH---hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 253 ISEKDCLVVEDSV---IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 253 ~~~~~~v~VGD~~---~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
--+++|=+. .|+..+... ...+.|.+..... +... . ...+++.++++++..
T Consensus 201 ----~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~--~~~~-------~-~~~~~~~~~~~~l~~ 254 (258)
T PRK13111 201 ----LPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI--IEEN-------P-EALEALAAFVKELKA 254 (258)
T ss_pred ----CcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH--HHhc-------c-hHHHHHHHHHHHHHH
Confidence 346677766 477777764 7777775543221 1110 1 345677777776643
No 359
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=35.84 E-value=5.2 Score=23.56 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
++..+|++.|+..+-+|...+....+.|.++
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 3556788899999999999998877777654
No 360
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=35.14 E-value=1.6e+02 Score=25.10 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
..+++...+.|.+++++- +..+..+...+.+ . ..| ....+.+...+.-+|.-+ +.++++.+-...++++||=+
T Consensus 98 ~~Ll~~a~~~~~~vfllG-gkp~V~~~a~~~l-~-~~~--p~l~ivg~h~GYf~~~e~--~~i~~~I~~s~pdil~VgmG 170 (253)
T COG1922 98 EALLKRAAEEGKRVFLLG-GKPGVAEQAAAKL-R-AKY--PGLKIVGSHDGYFDPEEE--EAIVERIAASGPDILLVGMG 170 (253)
T ss_pred HHHHHHhCccCceEEEec-CCHHHHHHHHHHH-H-HHC--CCceEEEecCCCCChhhH--HHHHHHHHhcCCCEEEEeCC
Confidence 344444444556666663 3344344433333 1 112 111222222233333333 34555554444556666665
Q ss_pred H
Q 020871 265 V 265 (320)
Q Consensus 265 ~ 265 (320)
.
T Consensus 171 ~ 171 (253)
T COG1922 171 V 171 (253)
T ss_pred C
Confidence 5
No 361
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=34.91 E-value=34 Score=23.20 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=14.6
Q ss_pred ccEEEEecCCccccchHH
Q 020871 67 LQALIFDCDGVIIESEHL 84 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~ 84 (320)
.-.|+.+-|||.+|++..
T Consensus 39 ~~~lvL~eDGT~Vd~Eey 56 (79)
T cd06538 39 ISSLVLDEDGTGVDTEEF 56 (79)
T ss_pred ccEEEEecCCcEEccHHH
Confidence 356999999999987653
No 362
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=34.70 E-value=3.8e+02 Score=24.85 Aligned_cols=121 Identities=7% Similarity=0.043 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCC---------chhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAA---------TKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~---------~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
....++++.|.++|+++.+++-. +......+.+.+ . .- -...+..++ .++.-+..++.+..
T Consensus 260 ~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~-~--~~--~~~~vi~~~-----~~~~e~~~iIs~~d 329 (426)
T PRK10017 260 KAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV-S--DP--ARYHVVMDE-----LNDLEMGKILGACE 329 (426)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc-c--cc--cceeEecCC-----CChHHHHHHHhhCC
Confidence 34557778888889999988753 122223333332 1 11 011121211 12223344444432
Q ss_pred CCCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccc--cceecccccccChhHHHHHHHHhhh
Q 020871 253 ISEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKD--AIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 253 ~~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~--~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
++||=+.+-.-.|..+|.+++.+........-+.. .....-+..+++.++|.+.+++++.
T Consensus 330 ------l~ig~RlHa~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 330 ------LTVGTRLHSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred ------EEEEecchHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 68999999999999999999998764332221211 1122334466666777777666543
No 363
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=34.66 E-value=1.8e+02 Score=22.50 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=40.7
Q ss_pred CCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCC---CHHHHHHHHHHcCC--CCCCEEEEecCHhhH
Q 020871 194 AGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKP---DPSIYVTAAKRLGI--SEKDCLVVEDSVIGL 268 (320)
Q Consensus 194 ~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP---~~~~~~~~~~~l~~--~~~~~v~VGD~~~Dv 268 (320)
.+.++.+++|.+.......+..+ .... +.++.....+..+- ..+.+...+++.+. ...+++.|-|...-+
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~~~~-~~~~----tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l 122 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELLKKL-DPET----TLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGL 122 (158)
T ss_pred CCceEEEEeCCCHHHHHHHHHhC-Cccc----EEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHH
Confidence 46778888888887766666654 3332 23333222221111 11222333333332 446788888855544
Q ss_pred HH-HHHcCCeEEE
Q 020871 269 QA-ATRAGMACVI 280 (320)
Q Consensus 269 ~~-a~~aG~~~v~ 280 (320)
.. +...|..+..
T Consensus 123 ~~~a~~~~~~~~~ 135 (158)
T cd05015 123 LKKAGIEGLNTFE 135 (158)
T ss_pred HHHcCCCcceeee
Confidence 44 3334444433
No 364
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=34.44 E-value=1.1e+02 Score=26.72 Aligned_cols=100 Identities=9% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEE-eCCCCCCCCCCHHHHHHHHHHcCCCC--
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFL-AGDDVKQKKPDPSIYVTAAKRLGISE-- 255 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~-~~~~~~~~KP~~~~~~~~~~~l~~~~-- 255 (320)
-...|-.+++..|++++ +-+++||.-+..+-...... +|.++ ++.++...+-..+-|...++.-|++.
T Consensus 271 Gyttgp~~li~llrqr~-RpylFSnslppavV~~a~ka--------~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg 341 (417)
T KOG1359|consen 271 GYTTGPKPLISLLRQRS-RPYLFSNSLPPAVVGMAAKA--------YDLLMVSSKEIQSRQANTQRFREFMEAAGFTISG 341 (417)
T ss_pred CCccCChhHHHHHHhcC-CceeecCCCChhhhhhhHHH--------HHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecC
Confidence 35567778888898885 56788888664332222111 23222 23344445555666777777776543
Q ss_pred ----CCEEEEecCHhhHHHHHH---cCCeEEEEeCCCCc
Q 020871 256 ----KDCLVVEDSVIGLQAATR---AGMACVITYTSSTA 287 (320)
Q Consensus 256 ----~~~v~VGD~~~Dv~~a~~---aG~~~v~v~~~~~~ 287 (320)
=--+|+||..--..++.. .|+.++++..+...
T Consensus 342 ~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP 380 (417)
T KOG1359|consen 342 ASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVP 380 (417)
T ss_pred CCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCC
Confidence 235799999877777765 58888877666443
No 365
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=34.31 E-value=2.6e+02 Score=22.84 Aligned_cols=73 Identities=21% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhH-HHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCC--CCEEEE
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSV-ILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISE--KDCLVV 261 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~-~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~--~~~v~V 261 (320)
..+++.|++. |++++++|.-.... ...+.+..|..- -.+-++.. + .-++.+..++++++.... -+.++|
T Consensus 31 e~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i----~~v~TG~~--C-H~da~m~~~ai~~l~~~~~~~Dll~i 102 (202)
T COG0378 31 EKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPI----IGVETGKG--C-HLDASMNLEAIEELVLDFPDLDLLFI 102 (202)
T ss_pred HHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCee----EEeccCCc--c-CCcHHHHHHHHHHHhhcCCcCCEEEE
Confidence 4556678887 99999999764422 223333113221 12222211 2 367788888888886532 489999
Q ss_pred ecCH
Q 020871 262 EDSV 265 (320)
Q Consensus 262 GD~~ 265 (320)
....
T Consensus 103 Es~G 106 (202)
T COG0378 103 ESVG 106 (202)
T ss_pred ecCc
Confidence 8887
No 366
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=34.20 E-value=78 Score=23.10 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
....+..+.++.+|+.|.+++++|+......
T Consensus 64 g~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 64 GETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred ccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 3456888999999999999999998766544
No 367
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=33.93 E-value=34 Score=26.75 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=16.9
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHhcc
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFN 97 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g 97 (320)
=+|+.|.|++.........+.+.+.+.++|
T Consensus 25 iAvfID~~Nv~~~~~~~d~~~i~~~ls~~G 54 (160)
T TIGR00288 25 IGLLVDGPNMLRKEFNIDLDEIREILSEYG 54 (160)
T ss_pred EEEEEeCCccChhhhccCHHHHHHHHHhcC
Confidence 378889999974321111344455555555
No 368
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=33.72 E-value=2.5e+02 Score=22.49 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHC--CCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 020871 183 GVLRLMDEAKAA--GKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (320)
Q Consensus 183 g~~~~l~~L~~~--g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 260 (320)
-+.++++.|++. ++++.+-|..... ....+..+ ..- ...++. +-..+......++++ .|+-+++
T Consensus 36 a~~~Li~~l~~~~p~~~illT~~T~tg--~~~~~~~~--~~~--v~~~~~------P~D~~~~~~rfl~~~--~P~~~i~ 101 (186)
T PF04413_consen 36 AARPLIKRLRKQRPDLRILLTTTTPTG--REMARKLL--PDR--VDVQYL------PLDFPWAVRRFLDHW--RPDLLIW 101 (186)
T ss_dssp HHHHHHHHHTT---TS-EEEEES-CCH--HHHHHGG---GGG---SEEE---------SSHHHHHHHHHHH----SEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCch--HHHHHHhC--CCC--eEEEEe------CccCHHHHHHHHHHh--CCCEEEE
Confidence 355677777776 7888777765543 22333321 111 234433 223455777787776 5788899
Q ss_pred EecCH--hhHHHHHHcCCeEEEEeCCCCc
Q 020871 261 VEDSV--IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 261 VGD~~--~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++-.. |=+..+++.|++.+++|..-..
T Consensus 102 ~EtElWPnll~~a~~~~ip~~LvNarls~ 130 (186)
T PF04413_consen 102 VETELWPNLLREAKRRGIPVVLVNARLSE 130 (186)
T ss_dssp ES----HHHHHH-----S-EEEEEE----
T ss_pred EccccCHHHHHHHhhcCCCEEEEeeeecc
Confidence 99888 4677788889999999876543
No 369
>PRK04940 hypothetical protein; Provisional
Probab=33.58 E-value=89 Score=25.02 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCEEEEecCHhhHHH---HHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHH
Q 020871 256 KDCLVVEDSVIGLQA---ATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELL 312 (320)
Q Consensus 256 ~~~v~VGD~~~Dv~~---a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 312 (320)
+.++.||-|.-..-+ |...|+++|++|........+......-.++.+++.+.+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL 119 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEENMEGKIDRPEEYADIATKCVTNF 119 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHHHHHHHhCCCcchhhhhHHHHHHh
Confidence 458899999966554 478999999999887765544433222233445555544433
No 370
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=33.58 E-value=95 Score=26.95 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHH------HcCCeEEEEeCCCCc
Q 020871 235 KQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAAT------RAGMACVITYTSSTA 287 (320)
Q Consensus 235 ~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~------~aG~~~v~v~~~~~~ 287 (320)
...-|.++.|..+++.+|++.++.|+|=|..+...+++ ..|..-|.+.+|+..
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~ 127 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLP 127 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHH
Confidence 45678999999999999999887777766665555554 478887777666554
No 371
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.42 E-value=67 Score=25.37 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVI 210 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~ 210 (320)
...+++.++++.++++|.++..+|+.....+.
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 35678899999999999999999998765443
No 372
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=33.15 E-value=2.8e+02 Score=22.91 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHH-HHHcCCeEEEEeCC
Q 020871 237 KKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQA-ATRAGMACVITYTS 284 (320)
Q Consensus 237 ~KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~-a~~aG~~~v~v~~~ 284 (320)
..|+.+.+..+++..++ .++..|+-. .|++. +...|+..|++...
T Consensus 182 ~g~~~~~~~~i~~~~~i---pvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 182 KGYDLELIKTVSDAVSI---PVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCCCHHHHHHHHhhCCC---CEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 34677888888877654 388888544 69888 88899999988653
No 373
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.51 E-value=1.5e+02 Score=26.22 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCCC-CCEEEEecCHhh---HHHHHHcCCeEEEEeCCCCchhhcc---ccceecccccccChhHHHHHHHH
Q 020871 243 IYVTAAKRLGISE-KDCLVVEDSVIG---LQAATRAGMACVITYTSSTAEQDFK---DAIAIYPDLSNVRLKDLELLLQN 315 (320)
Q Consensus 243 ~~~~~~~~l~~~~-~~~v~VGD~~~D---v~~a~~aG~~~v~v~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~l~~ 315 (320)
.-.++|++-++.+ +++++.|-++-. +..|+..|..-|.+..-...+-++. .++.+.++-...+++++.+++++
T Consensus 157 V~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 157 VGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred hhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHh
Confidence 3466788888876 788899999954 4567778887666655444333322 45556555554468888888887
Q ss_pred hh
Q 020871 316 VV 317 (320)
Q Consensus 316 ~~ 317 (320)
.+
T Consensus 237 ~~ 238 (354)
T KOG0024|consen 237 AL 238 (354)
T ss_pred hc
Confidence 65
No 374
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=32.01 E-value=1.9e+02 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.9
Q ss_pred cceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH
Q 020871 225 LDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (320)
Q Consensus 225 fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~ 265 (320)
+|.++.+.-+..++|++++...+- .+ ...++..||=..
T Consensus 40 yD~i~lG~w~d~G~~d~~~~~fl~-~l--~~KkV~lF~T~G 77 (160)
T PF12641_consen 40 YDLIFLGFWIDKGTPDKDMKEFLK-KL--KGKKVALFGTAG 77 (160)
T ss_pred CCEEEEEcCccCCCCCHHHHHHHH-Hc--cCCeEEEEEecC
Confidence 588888887888999988766554 43 457888887643
No 375
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=31.75 E-value=3.9e+02 Score=24.13 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=67.5
Q ss_pred HHHHHHHHHCCCcEEEEeCC--chhhHHHHHHHhh--CCccccCcceEEeC-CCC-----CCCCCCHHHHHHHHHHcCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAA--TKSSVILCLENLI--GMERFEGLDCFLAG-DDV-----KQKKPDPSIYVTAAKRLGIS 254 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~--~~~~~~~~l~~~~--~l~~~~~fd~v~~~-~~~-----~~~KP~~~~~~~~~~~l~~~ 254 (320)
.++|..+.+.|.++.+-|+. +.+.+...++.+. |-. +.+++- +-. +....+-..+..+-+.++++
T Consensus 215 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~-----~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~P 289 (360)
T PRK12595 215 FELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNG-----QIILCERGIRTYEKATRNTLDISAVPILKQETHLP 289 (360)
T ss_pred HHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCC-----CEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCC
Confidence 58999999999999888874 4555555555541 222 233331 211 13335666777777777764
Q ss_pred CCCEEEE-ecCHhh---H-----HHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 255 EKDCLVV-EDSVIG---L-----QAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 255 ~~~~v~V-GD~~~D---v-----~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
++ + -|+..+ + .+|..+|..++++..-. ....+.++ ...-+++++|..+++++.
T Consensus 290 ---V~-~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~--dp~~a~~D----~~~sl~p~el~~l~~~i~ 351 (360)
T PRK12595 290 ---VM-VDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP--DPAVALSD----SAQQMDIPEFDRFLDELK 351 (360)
T ss_pred ---EE-EeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC--CCCCCCCc----hhhhCCHHHHHHHHHHHH
Confidence 33 4 233222 2 34677898766664432 22223333 234468899999988653
No 376
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.36 E-value=76 Score=23.28 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
.+.+.++++.++++|.+++++|+....
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 467888999999999999999997654
No 377
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=31.28 E-value=3e+02 Score=23.48 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCC-----CCCCH-----------
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQ-----KKPDP----------- 241 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~-----~KP~~----------- 241 (320)
+...+++.++.+.+++.|-++.+.++... +...... ....++ +-.++..-+... +-|..
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G~~~--l~~f~~~-~~~~~~--~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~ 185 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTGRQN--LAHFVAA-DAHSHV--LARVLPPPDVLAKCEDLGVPPARIIAMRGPFSE 185 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecCccc--hHHHhcC-cccceE--EEEEcCchHHHHHHHhcCCChhhEEEecCCcCh
Confidence 45567888888888888766666665543 2222222 133333 333332222111 11111
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCHhh------HHHHHHcCCeEEEEeCC
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSVIG------LQAATRAGMACVITYTS 284 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~~D------v~~a~~aG~~~v~v~~~ 284 (320)
+.=..++++++++ +++-=||... +++|...|+.++++.++
T Consensus 186 ~~n~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 186 EDNKALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 1223455666653 5655555544 89999999999999887
No 378
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=31.24 E-value=3.2e+02 Score=24.57 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCccccCCCCCCchhHHHHHHHHHHHHHHH
Q 020871 89 YNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSSTIFDNPPVTDDDQAKLIDLIQDWKTER 168 (320)
Q Consensus 89 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 168 (320)
+.+.+++.|+.. ..|...+.+...+++.|--...+......+.................-
T Consensus 97 L~~~Lk~~gipg--------------------I~GIDTRaLtr~iR~~G~m~~~I~~~~~~~~~~~~~~~~~~~~~~~~d 156 (368)
T COG0505 97 LDEYLKEEGIPG--------------------IAGIDTRALTRKIREKGAMKGVIATGPELDPAKLLERARAFPGILGTD 156 (368)
T ss_pred HHHHHHHcCCCc--------------------eecccHHHHHHHHHhcCCcceEeecCcccChHHHHHHHhhcCCCCccc
Q ss_pred HHHHHHhCCCCCChh-----------------HH-HHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEe
Q 020871 169 YQQIIKSGTVEPRPG-----------------VL-RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLA 230 (320)
Q Consensus 169 ~~~~~~~~~~~~~~g-----------------~~-~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~ 230 (320)
+.+.+.......+++ ++ ..|+.|.++|.++.++--... .+.+++.. .|.++.
T Consensus 157 lv~~VSt~~~~~~~~~~~~~~~~~~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~--~eeIl~~~--------pDGifl 226 (368)
T COG0505 157 LVKEVSTKEPYTWPGLNGGGEPGKHVVVIDFGVKRNILRELVKRGCRVTVVPADTS--AEEILALN--------PDGIFL 226 (368)
T ss_pred ccceeecCCceeccccccCCCCCcEEEEEEcCccHHHHHHHHHCCCeEEEEcCCCC--HHHHHhhC--------CCEEEE
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCC-C
Q 020871 231 GDDVKQKKPDPSIYVTAAKRLGIS-E 255 (320)
Q Consensus 231 ~~~~~~~KP~~~~~~~~~~~l~~~-~ 255 (320)
|.--+.+++-...+..+-+.++.. |
T Consensus 227 SNGPGDP~~~~~~i~~ik~l~~~~iP 252 (368)
T COG0505 227 SNGPGDPAPLDYAIETIKELLGTKIP 252 (368)
T ss_pred eCCCCChhHHHHHHHHHHHHhccCCC
No 379
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=31.05 E-value=1.1e+02 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCCChhH-HHHHHHHHHCCCcEEEEeCCc
Q 020871 176 GTVEPRPGV-LRLMDEAKAAGKKVAVCSAAT 205 (320)
Q Consensus 176 ~~~~~~~g~-~~~l~~L~~~g~~i~i~Tn~~ 205 (320)
+...++++. .++++.+++.|+++.+.||+.
T Consensus 74 GEPll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 74 GEPLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cccccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 445677884 599999999999999999994
No 380
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=30.94 E-value=3.3e+02 Score=24.83 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=15.8
Q ss_pred HcCCCCCCEEEEecCH--hhHHHHHHcCCeEE
Q 020871 250 RLGISEKDCLVVEDSV--IGLQAATRAGMACV 279 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~--~Dv~~a~~aG~~~v 279 (320)
..|+++++++|=|-.- .+++.|...|+..+
T Consensus 75 ~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i 106 (394)
T cd06831 75 ELGVSPENIIYTNPCKQASQIKYAAKVGVNIM 106 (394)
T ss_pred hcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEE
Confidence 4555555555555432 35555555555433
No 381
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=30.91 E-value=1.7e+02 Score=23.24 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=34.8
Q ss_pred cCCCCCCEEEEecCHhhHHHHHHc----CCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 251 LGISEKDCLVVEDSVIGLQAATRA----GMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 251 l~~~~~~~v~VGD~~~Dv~~a~~a----G~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
+..+..++++||++..|+..|.+. |-..+.+..+.. ...++.+ +.-=.++...+++.+-++++.
T Consensus 61 ~ahDshniiviG~~~~dm~~A~n~l~~~gGG~vvv~~g~v-~a~lpLp--i~GlmS~~~~eev~~~~~~l~ 128 (171)
T PF13382_consen 61 VAHDSHNIIVIGTNDEDMALAANRLIEMGGGIVVVDDGEV-LAELPLP--IAGLMSDLPAEEVARQLEELE 128 (171)
T ss_dssp --TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETTEE-EEEEE-T--BTTTBBSS-HHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCHHHHHHHHHHHHHhCCCEEEEECCEE-EEEEecc--ccceecCCCHHHHHHHHHHHH
Confidence 345678899999999999988774 666666655532 2222211 222334445566655555443
No 382
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=30.88 E-value=2.9e+02 Score=22.34 Aligned_cols=90 Identities=11% Similarity=0.020 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
|..-+-..|+.+|+++..+-.+.+ .+.+++..-.. . +|.+..|.-.....+...-+...+++.+..++-.++||
T Consensus 100 G~~~v~~~l~~~G~~vi~LG~~vp--~e~~v~~~~~~-~---pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 100 GKNIVVTMLRANGFDVIDLGRDVP--IDTVVEKVKKE-K---PLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCC--HHHHHHHHHHc-C---CCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 333444456777777665432222 22233322111 1 45555555444444444445555566666555567777
Q ss_pred cCHhhHHHHHHcCCeE
Q 020871 263 DSVIGLQAATRAGMAC 278 (320)
Q Consensus 263 D~~~Dv~~a~~aG~~~ 278 (320)
-..-.-+.++..|...
T Consensus 174 G~~~~~~~~~~~gad~ 189 (197)
T TIGR02370 174 GAPVTQDWADKIGADV 189 (197)
T ss_pred ChhcCHHHHHHhCCcE
Confidence 7774445677777764
No 383
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=30.66 E-value=2.4e+02 Score=21.41 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=55.0
Q ss_pred CcEEEEeCCch-hhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc
Q 020871 196 KKVAVCSAATK-SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA 274 (320)
Q Consensus 196 ~~i~i~Tn~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a 274 (320)
+.-.+.|++.- ..+.+.++.+ ... .|.+++|.|... .+...++..|++-+++....|...-....++.
T Consensus 21 v~~tiatgGklf~ev~e~iqeL---~d~--V~i~IASgDr~g------sl~~lae~~gi~~~rv~a~a~~e~K~~ii~eL 89 (152)
T COG4087 21 VLYTIATGGKLFSEVSETIQEL---HDM--VDIYIASGDRKG------SLVQLAEFVGIPVERVFAGADPEMKAKIIREL 89 (152)
T ss_pred EEEEEccCcEEcHhhHHHHHHH---HHh--heEEEecCCcch------HHHHHHHHcCCceeeeecccCHHHHHHHHHHh
Confidence 34445555542 2233334443 344 677888765321 66778889998877777766666545555555
Q ss_pred C---CeEEEEeCCCCchhhccccc
Q 020871 275 G---MACVITYTSSTAEQDFKDAI 295 (320)
Q Consensus 275 G---~~~v~v~~~~~~~~~l~~~~ 295 (320)
+ -.+++|.++.+..-.+..++
T Consensus 90 kk~~~k~vmVGnGaND~laLr~AD 113 (152)
T COG4087 90 KKRYEKVVMVGNGANDILALREAD 113 (152)
T ss_pred cCCCcEEEEecCCcchHHHhhhcc
Confidence 4 67999999888765555443
No 384
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=30.55 E-value=1.8e+02 Score=26.37 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=32.3
Q ss_pred ecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCC
Q 020871 73 DCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPS 140 (320)
Q Consensus 73 D~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 140 (320)
|+|++++.++......+.+.+++.|++....+ .....+...+......+.++|++.
T Consensus 27 ~id~vi~g~E~~l~~~~~d~l~~~Gi~~~g~s------------~~a~~l~~dK~~~k~~l~~~gIpt 82 (379)
T PRK13790 27 NVDWVVIGPEQPLIDGLADILRANGFKVFGPN------------KQAAQIEGSKLFAKKIMEKYNIPT 82 (379)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhCCCcEECCC------------HHHHHHhCCHHHHHHHHHHCCCCC
Confidence 44555555555555566677777776532110 111233566667778888888874
No 385
>KOG4584 consensus Uncharacterized conserved protein [General function prediction only]
Probab=30.52 E-value=1.7e+02 Score=25.49 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.2
Q ss_pred CCCChhHHHHHHHHHHCCC
Q 020871 178 VEPRPGVLRLMDEAKAAGK 196 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~ 196 (320)
+..+|++.+.+..|...|-
T Consensus 118 ia~fP~vv~~lDal~dE~~ 136 (348)
T KOG4584|consen 118 IALFPQVVRLLDALEDEGT 136 (348)
T ss_pred HHHhHHHHHHHhhhcchhH
Confidence 5789999999998886653
No 386
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.33 E-value=2.7e+02 Score=24.82 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=49.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHH------H-cCCCCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAK------R-LGISEKD 257 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~------~-l~~~~~~ 257 (320)
..++.+|++.|+.+.+.+-. ......+++.. |++.. +++... . .+ .......+.+ . ....|+
T Consensus 17 k~~I~eL~~~GheV~it~R~-~~~~~~LL~~y-g~~y~-----~iG~~g-~-~~-~~Kl~~~~~R~~~l~~~~~~~~pD- 85 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARD-KDETEELLDLY-GIDYI-----VIGKHG-D-SL-YGKLLESIERQYKLLKLIKKFKPD- 85 (335)
T ss_pred HHHHHHHHhCCCEEEEEEec-cchHHHHHHHc-CCCeE-----EEcCCC-C-CH-HHHHHHHHHHHHHHHHHHHhhCCC-
Confidence 45677899999988876654 45566677765 66532 233222 1 11 1111111111 1 123443
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 258 CLVVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
+++-..++.=...|...|+++|.+.+...
T Consensus 86 v~is~~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 86 VAISFGSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred EEEecCcHHHHHHHHHhCCCeEEEecCch
Confidence 34333444444588889999998877543
No 387
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=30.28 E-value=1.3e+02 Score=27.63 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEecCHhhH----HHHHHcCCeEEEEeCC
Q 020871 239 PDPSIYVTAAKRLGISEKDCLVVEDSVIGL----QAATRAGMACVITYTS 284 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv----~~a~~aG~~~v~v~~~ 284 (320)
...+-...+++++|--.+-+++|||+..|+ .++...|.....+.++
T Consensus 206 dE~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 206 DEMEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 334456677888887778899999999765 4555566776555443
No 388
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=30.10 E-value=3.3e+02 Score=22.77 Aligned_cols=102 Identities=15% Similarity=0.183 Sum_probs=61.0
Q ss_pred EEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHH-HHHc---CCCCCCEEEEecCH--hhHHHHHH
Q 020871 200 VCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTA-AKRL---GISEKDCLVVEDSV--IGLQAATR 273 (320)
Q Consensus 200 i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~-~~~l---~~~~~~~v~VGD~~--~Dv~~a~~ 273 (320)
+.++......+++++.+ |-+.. +. -++.++... ++++ -.++...++|-|-- |+++..++
T Consensus 111 ~~~~~~~~SiR~llQ~~-GTd~~-------------R~-~d~~~Wvr~a~~~~~~~~~~~~~~vVVTDVRf~nEie~lre 175 (227)
T PHA02575 111 ILNNNNPWSIRRLMQTL-GTDIV-------------VN-FNKMYWVKLFALKYLDKFKSDYDYFIVTDVRQDHEMELVRA 175 (227)
T ss_pred HcCCCCCCCHHHHHHHh-cCcee-------------ee-cCcCHhHHHHHHHHHHhhhccCCCEEEeCCCChhHHHHHHH
Confidence 34666777788888776 53311 00 112233332 2231 12445678899977 89999999
Q ss_pred cCCeEEEEeCCCCc------hhhcc--ccceecccccccChhHHHHHHHHhhh
Q 020871 274 AGMACVITYTSSTA------EQDFK--DAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 274 aG~~~v~v~~~~~~------~~~l~--~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
.|...|.+.++... +..+. ..+.++.+ +-++.+|.+.|.+++.
T Consensus 176 ~Gg~iV~V~R~~~~vd~H~SE~gLd~~~~D~vI~N--dGtleeL~~qV~~ll~ 226 (227)
T PHA02575 176 MGATVIHVVRDTGLVDTHSTEAGLPIQPGDIVITN--NGTLEELKSKILNLIK 226 (227)
T ss_pred cCCEEEEEecCCCCccCCCCccCCCCCCCCEEEEc--CCCHHHHHHHHHHHhh
Confidence 99888888776532 12221 23444444 4578888888887764
No 389
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=29.69 E-value=24 Score=26.16 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=14.2
Q ss_pred CCCccEEEEecCCccc
Q 020871 64 SQSLQALIFDCDGVII 79 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~ 79 (320)
.+.+..|+||+.+||-
T Consensus 42 ~~~P~iV~FDmK~Tld 57 (128)
T PRK13717 42 LNAPVTAAFNMKQTVD 57 (128)
T ss_pred cCCCeEEEEehHHHHH
Confidence 4579999999999997
No 390
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=29.57 E-value=30 Score=29.49 Aligned_cols=12 Identities=25% Similarity=0.672 Sum_probs=0.0
Q ss_pred cEEEEecCCccc
Q 020871 68 QALIFDCDGVII 79 (320)
Q Consensus 68 k~viFD~DGTL~ 79 (320)
|+++.|+|+||+
T Consensus 90 k~lVLDLDeTLv 101 (262)
T KOG1605|consen 90 KTLVLDLDETLV 101 (262)
T ss_pred ceEEEeCCCccc
No 391
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=29.51 E-value=3.7e+02 Score=23.20 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHCCCc-EEEEe
Q 020871 183 GVLRLMDEAKAAGKK-VAVCS 202 (320)
Q Consensus 183 g~~~~l~~L~~~g~~-i~i~T 202 (320)
+...+.+.|-+.|++ +++++
T Consensus 166 ~~~~a~~~L~~~G~r~I~~i~ 186 (328)
T PRK11303 166 DAEMLAESLLKFPAESILLLG 186 (328)
T ss_pred HHHHHHHHHHHCCCCeEEEEe
Confidence 455556666666655 44444
No 392
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=29.46 E-value=3.7e+02 Score=23.12 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=45.3
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCC----------
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGIS---------- 254 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~---------- 254 (320)
.++.+.++++|+.+..+.-...-.-....+.. ++-- +--.+++.--...++-....+...++.+|++
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~-~~v~--~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~~~ 117 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEGLPDQVFTRDP-GLVT--GEGAVLARMGAPERRGEEEAIKETLESLGIPIYPRVEAGVF 117 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccCCCcceEeccc-eeEe--cccEEEeccCChhhccCHHHHHHHHHHcCCcccccccCCCc
Confidence 35566678889999888621111000000110 1100 0012222222334455667888888888864
Q ss_pred ---------CCCEEEEecCH-hhHHHHHH
Q 020871 255 ---------EKDCLVVEDSV-IGLQAATR 273 (320)
Q Consensus 255 ---------~~~~v~VGD~~-~Dv~~a~~ 273 (320)
-.+.++||.+. +|.+++..
T Consensus 118 eG~GD~l~~~~~~v~iG~s~RTn~egi~~ 146 (267)
T COG1834 118 EGAGDVLMDGGDTVYIGYSFRTNLEGIEQ 146 (267)
T ss_pred cccccEEEeCCcEEEEEeccccchHHHHH
Confidence 15577778887 47777665
No 393
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=29.15 E-value=1.2e+02 Score=27.14 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=46.7
Q ss_pred HHHHC-CCcEEE-EeCCc--hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCCEEEEecC
Q 020871 190 EAKAA-GKKVAV-CSAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRL-GISEKDCLVVEDS 264 (320)
Q Consensus 190 ~L~~~-g~~i~i-~Tn~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l-~~~~~~~v~VGD~ 264 (320)
+|++. ++++.+ +|+.- ..+.....+.+ ++ .- .+..+..+.....+--...+..+.+.+ ...|+=+++.||+
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f-~i-~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~ 77 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGF-GI-PK--PDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDR 77 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHT-T---S--EEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTS
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhC-CC-CC--CCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 34554 566554 56555 56666666654 77 33 466655433222222222222222222 2378889999999
Q ss_pred Hh---hHHHHHHcCCeEEEEeCC
Q 020871 265 VI---GLQAATRAGMACVITYTS 284 (320)
Q Consensus 265 ~~---Dv~~a~~aG~~~v~v~~~ 284 (320)
.. -..+|...+++.+.+..|
T Consensus 78 ~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 78 NEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHTT-EEEEES--
T ss_pred chHHHHHHHHHHhCCCEEEecCC
Confidence 95 455666789999998777
No 394
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.96 E-value=2.2e+02 Score=20.37 Aligned_cols=30 Identities=27% Similarity=0.231 Sum_probs=22.8
Q ss_pred HHHHHHHHCCCcEEEEeCCchhhHHHHHHH
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSSVILCLEN 215 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~ 215 (320)
+...+|++.|+++++++-++.+..+...+.
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~ 33 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCEL 33 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhc
Confidence 446678899999999998888556655544
No 395
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.91 E-value=78 Score=24.95 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchh
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
...+++.++++.+|++|.++..+|+....
T Consensus 112 G~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 112 GNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45679999999999999999999988654
No 396
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=28.87 E-value=3.2e+02 Score=22.31 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHCC-CcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC------CCCCCCCCCHHHHHHHHHHcCCCC
Q 020871 183 GVLRLMDEAKAAG-KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG------DDVKQKKPDPSIYVTAAKRLGISE 255 (320)
Q Consensus 183 g~~~~l~~L~~~g-~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~------~~~~~~KP~~~~~~~~~~~l~~~~ 255 (320)
...++++.+++.| +.+.+ .-.+.+.. ...... |.+ .+... .......+..+.+..+.+..+++
T Consensus 110 ~~~~~i~~~~~~g~~~iiv-~v~t~~ea-~~a~~~-G~d------~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ip- 179 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMA-DISTLEEA-LNAAKL-GFD------IIGTTLSGYTEETAKTEDPDFELLKELRKALGIP- 179 (219)
T ss_pred CHHHHHHHHHHHhCCeEEE-ECCCHHHH-HHHHHc-CCC------EEEccCccccccccCCCCCCHHHHHHHHHhcCCC-
Confidence 6778888888887 54433 33333333 223333 433 22211 11122345556777777666542
Q ss_pred CCEEEEec--CHhhHHHHHHcCCeEEEEeCC
Q 020871 256 KDCLVVED--SVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 256 ~~~v~VGD--~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
++..|. +..|+..+...|...+++.+.
T Consensus 180 --via~GGI~~~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 180 --VIAEGRINSPEQAAKALELGADAVVVGSA 208 (219)
T ss_pred --EEEeCCCCCHHHHHHHHHCCCCEEEEchH
Confidence 555554 236899988999999988654
No 397
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=28.57 E-value=1.8e+02 Score=28.57 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc-eEEeC--CCCCCCCC--------------CHH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD-CFLAG--DDVKQKKP--------------DPS 242 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd-~v~~~--~~~~~~KP--------------~~~ 242 (320)
++.+..+.+.+-...|+.+-.+|+........--+++ |...-.... ..++. ++.-.+-| .|+
T Consensus 493 prhdsa~tirral~lGv~VkmitgdqlaI~keTgrrl-gmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 493 PRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRL-GMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CccchHHHHHHHHhccceeeeecchHHHHHHhhhhhh-ccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 4668889999999999999999987766555544554 443210011 11111 11111111 122
Q ss_pred HHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCeEE
Q 020871 243 IYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMACV 279 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~~v 279 (320)
---.+.+++.-...-|-|-||+.||..+.+.|.....
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigia 608 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIA 608 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCcccchhhccccccee
Confidence 2233455565555668899999999999999987643
No 398
>PF04358 DsrC: DsrC like protein; InterPro: IPR007453 DsrC (P45573 from SWISSPROT) has been observed to co-purify with Desulphovibrio vulgaris dissimilatory sulphite reductase []. However, DsrC appears to be only loosely associated to the sulphite reductase, which suggests that it may not be an integral part of the dissimilatory sulphite reductase. Many proteins in this entry are found in organisms such as Escherichia coli and Haemophilus influenzae which do not contain dissimilatory sulphite reductases but can synthesise assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins []. The strictly conserved cysteine in the C terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds []. Also included in this entry is TusE, a partner to TusBCD in a sulphur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Many proteins in this entry are annotated as the third (gamma) subunit of dissimilatory sulphite reductase ; PDB: 2V4J_F 2A5W_C 1SAU_A 1JI8_A 1YX3_A.
Probab=28.42 E-value=2.3e+02 Score=20.53 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=22.3
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHhcccCC
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFNVRC 100 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~ 100 (320)
+.|-+|=+|=|+|....-.+....++++.|+..
T Consensus 7 ~~i~~D~eGfL~~~~dW~eevA~~lA~~egI~L 39 (109)
T PF04358_consen 7 KTIETDEEGFLVDPEDWNEEVAEALAKEEGIEL 39 (109)
T ss_dssp EEEEEETTSEESSGGG--HHHHHHHHHCTT-S-
T ss_pred EEeeeCCCcCcCChHhCCHHHHHHHHHHcCCCC
Confidence 568899999999987666666666666667653
No 399
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.40 E-value=3.8e+02 Score=22.97 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=64.5
Q ss_pred HHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhh--CCccccCcceEEeCCCC--CCCCC----CHHHHHHHHHHcCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLI--GMERFEGLDCFLAGDDV--KQKKP----DPSIYVTAAKRLGIS 254 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~--~l~~~~~fd~v~~~~~~--~~~KP----~~~~~~~~~~~l~~~ 254 (320)
.++|+++.+.|.++.+-++.. .+.+....+.+. |-. +.+++-..+ ...-| +-..+..+-+.++++
T Consensus 124 ~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~-----~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~p 198 (266)
T PRK13398 124 FELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNE-----NVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLP 198 (266)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCC-----eEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 578888888888887666533 333444443331 222 233332211 11122 222233333334542
Q ss_pred CCCEEEE-ecC--------HhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 255 EKDCLVV-EDS--------VIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 255 ~~~~v~V-GD~--------~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
|++ -|+ .....+|..+|..++++..-......+ .+...-+++++|.++++++..
T Consensus 199 ----V~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~------~D~~~sl~p~~l~~l~~~i~~ 261 (266)
T PRK13398 199 ----IIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKAL------SDARQTLNFEEMKELVDELKP 261 (266)
T ss_pred ----EEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccC------CchhhcCCHHHHHHHHHHHHH
Confidence 444 344 346788888999988886544433322 233455789999999987653
No 400
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=28.25 E-value=3.6e+02 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHHCCCcEEE
Q 020871 180 PRPGVLRLMDEAKAAGKKVAV 200 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i 200 (320)
+.++..++.+.|++.|.....
T Consensus 11 p~~~~~~l~~~l~~~G~~~~~ 31 (255)
T PRK05752 11 PAEECAALAASLAEAGIFSSS 31 (255)
T ss_pred cHHHHHHHHHHHHHcCCCEEE
Confidence 344455555555555555443
No 401
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=28.18 E-value=1.4e+02 Score=21.42 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCC
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGM 219 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l 219 (320)
++..++..++++.|+.+..++....+......+.. ++
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~-~~ 82 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY-GL 82 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH-TC
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhh-cc
Confidence 45566677788889999999998888777777776 53
No 402
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=28.14 E-value=2.4e+02 Score=25.41 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcc-eEEeCCCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLD-CFLAGDDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd-~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
.-.||+.-+|..+. ..+.|+++|....-....+++.+ .-..+ .. ..+.++-....-++ ..=+..+|-++++
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~l-DP~g~--IsYkLfr~~t~y~~G~H----vKdls~LNRdl~k 285 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDAL-DPKGY--ISYKLFRGATKYEEGHH----VKDLSKLNRDLQK 285 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhc-CCcce--EEEEEecCcccccCccc----hhhhhhhccccce
Confidence 46899999999887 55999999998877777777776 22222 22 22222222222222 1125678889999
Q ss_pred EEEEecCHh
Q 020871 258 CLVVEDSVI 266 (320)
Q Consensus 258 ~v~VGD~~~ 266 (320)
+|+|+=..+
T Consensus 286 VivVd~d~~ 294 (393)
T KOG2832|consen 286 VIVVDFDAN 294 (393)
T ss_pred eEEEEcccc
Confidence 999986654
No 403
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.86 E-value=2.7e+02 Score=21.04 Aligned_cols=87 Identities=16% Similarity=0.067 Sum_probs=48.3
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH-
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV- 265 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~- 265 (320)
+...|+.+|+++..+-...+ .+.+.+.....+ .|.+..|.-.....+...-+...+++.+.+ +-.++||-..
T Consensus 23 v~~~lr~~G~eVi~LG~~vp--~e~i~~~a~~~~----~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~ 95 (137)
T PRK02261 23 LDRALTEAGFEVINLGVMTS--QEEFIDAAIETD----ADAILVSSLYGHGEIDCRGLREKCIEAGLG-DILLYVGGNLV 95 (137)
T ss_pred HHHHHHHCCCEEEECCCCCC--HHHHHHHHHHcC----CCEEEEcCccccCHHHHHHHHHHHHhcCCC-CCeEEEECCCC
Confidence 33467888998876643322 233333321111 466666665555444444445555555443 3346676664
Q ss_pred -------hhHHHHHHcCCeEEE
Q 020871 266 -------IGLQAATRAGMACVI 280 (320)
Q Consensus 266 -------~Dv~~a~~aG~~~v~ 280 (320)
-|.+.+++.|+..|+
T Consensus 96 ~~~~~~~~~~~~l~~~G~~~vf 117 (137)
T PRK02261 96 VGKHDFEEVEKKFKEMGFDRVF 117 (137)
T ss_pred CCccChHHHHHHHHHcCCCEEE
Confidence 256788888976554
No 404
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.84 E-value=81 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred CChhHHHHHHHHHHCCCcEEEEe
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCS 202 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~T 202 (320)
-.+++.++++.++++|.++..+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999999998
No 405
>PLN03017 trehalose-phosphatase
Probab=27.79 E-value=1e+02 Score=27.80 Aligned_cols=33 Identities=9% Similarity=-0.050 Sum_probs=28.8
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILC 212 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~ 212 (320)
.+.+++.+.|++|. ++++++|+|+.....+...
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHh
Confidence 58899999999999 7799999999998877655
No 406
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=27.67 E-value=3.3e+02 Score=24.96 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=27.3
Q ss_pred HcCCCCCCEEEEecCH--hhHHHHHHcCCeEEEEeCC
Q 020871 250 RLGISEKDCLVVEDSV--IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~--~Dv~~a~~aG~~~v~v~~~ 284 (320)
..|++|+++++-|..- .++..|...|+.++-+++-
T Consensus 91 ~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~ 127 (394)
T COG0019 91 AAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSE 127 (394)
T ss_pred HcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCH
Confidence 4488999888888877 4888888889887766543
No 407
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=27.62 E-value=2.5e+02 Score=20.67 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Q 020871 181 RPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLV 260 (320)
Q Consensus 181 ~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~ 260 (320)
.+...+. |++ |+.+.+....+.+ ...+.+ .. +|.+++.... +-.++.+..+ ..+.+ +..
T Consensus 8 ~~~~~~~---l~~-~~~v~~~~~~~~~---~~~~~l---~~---~d~ii~~~~~---~~~~~~l~~~-~~Lk~----I~~ 66 (133)
T PF00389_consen 8 PDEEIER---LEE-GFEVEFCDSPSEE---ELAERL---KD---ADAIIVGSGT---PLTAEVLEAA-PNLKL----IST 66 (133)
T ss_dssp SHHHHHH---HHH-TSEEEEESSSSHH---HHHHHH---TT---ESEEEESTTS---TBSHHHHHHH-TT-SE----EEE
T ss_pred CHHHHHH---HHC-CceEEEeCCCCHH---HHHHHh---CC---CeEEEEcCCC---CcCHHHHhcc-ceeEE----EEE
Confidence 4444444 444 7767666633333 334443 22 4777775433 2344555444 33332 556
Q ss_pred EecCHh--hHHHHHHcCCeEEEEeC
Q 020871 261 VEDSVI--GLQAATRAGMACVITYT 283 (320)
Q Consensus 261 VGD~~~--Dv~~a~~aG~~~v~v~~ 283 (320)
.|-+.+ |++.+.+.|+...-+.+
T Consensus 67 ~~~G~d~id~~~a~~~gI~V~n~~g 91 (133)
T PF00389_consen 67 AGAGVDNIDLEAAKERGIPVTNVPG 91 (133)
T ss_dssp SSSSCTTB-HHHHHHTTSEEEE-TT
T ss_pred cccccCcccHHHHhhCeEEEEEeCC
Confidence 666664 99999999999665544
No 408
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=27.28 E-value=25 Score=23.16 Aligned_cols=38 Identities=11% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHH
Q 020871 236 QKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR 273 (320)
Q Consensus 236 ~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~ 273 (320)
..-|-...++.+++++.+++..+..|-+....+...+.
T Consensus 24 E~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QT 61 (76)
T PF03671_consen 24 EEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQT 61 (76)
T ss_dssp TTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSB
T ss_pred CCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchh
Confidence 34566678999999999999999888766544443333
No 409
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.13 E-value=92 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT 205 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~ 205 (320)
.-.+++.+.++.++++|.++..+|+..
T Consensus 54 G~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 54 GNTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 355788899999999999999999754
No 410
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=27.11 E-value=2.2e+02 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=15.9
Q ss_pred HHHHHHHHCCCcEEEEeCCchh
Q 020871 186 RLMDEAKAAGKKVAVCSAATKS 207 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~ 207 (320)
.++++..++|+.+..+.-+...
T Consensus 15 ~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 15 RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred HHHHHHHhCCCeeEEEEeChHh
Confidence 5778888999998776655443
No 411
>PRK13937 phosphoheptose isomerase; Provisional
Probab=27.00 E-value=99 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=25.9
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+++.+.++.++++|.++..+|+.....+
T Consensus 117 G~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 117 GNSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 3568999999999999999999999765533
No 412
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.96 E-value=97 Score=24.46 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
...+++.++++.++++|.++..+|+.....+
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 4567889999999999999999999776544
No 413
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.94 E-value=85 Score=24.38 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCCccEEEEecCCccccch-----HHHHHHHHHHHHhcc
Q 020871 64 SQSLQALIFDCDGVIIESE-----HLHRQAYNDAFSHFN 97 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~-----~~~~~~~~~~~~~~g 97 (320)
...+|+|+||-|++|.-.. +...+.|.+.-..||
T Consensus 40 ~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vyg 78 (190)
T KOG2961|consen 40 RKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYG 78 (190)
T ss_pred ccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhC
Confidence 3479999999999997432 334444444444444
No 414
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=26.88 E-value=1.2e+02 Score=32.01 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
.-+|++|+..|+++-|+|.-.. +..+|+.++....| .-..+ | +--..+--+.+++++|.++.-.+||=-+
T Consensus 1266 AiLLqQLk~eghRvLIfTQMtk--mLDVLeqFLnyHgy--lY~RL--D----g~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1266 AILLQQLKSEGHRVLIFTQMTK--MLDVLEQFLNYHGY--LYVRL--D----GNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred HHHHHHHHhcCceEEehhHHHH--HHHHHHHHHhhcce--EEEEe--c----CCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 4467889999999999987544 44456554333222 11111 1 1112334567788888877766677666
Q ss_pred HhhHHHHHHcCCeEEEEeCC
Q 020871 265 VIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 265 ~~Dv~~a~~aG~~~v~v~~~ 284 (320)
.+.-.+..-.|..+|.+.+.
T Consensus 1336 rSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred cCCccccccccCceEEEecC
Confidence 66666666777777766544
No 415
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=26.88 E-value=89 Score=19.55 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHCCCcEEEEe
Q 020871 182 PGVLRLMDEAKAAGKKVAVCS 202 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~T 202 (320)
|+-.+-|..|.+.|.+|.|.+
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~ 22 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMT 22 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--
T ss_pred cHHHHHHHHHHHCCCeEEecC
Confidence 566788999999999999986
No 416
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=26.88 E-value=2.1e+02 Score=23.29 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCC--CCCCCCHHHHHHHHHHcCCCCCCEEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDV--KQKKPDPSIYVTAAKRLGISEKDCLV 260 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~--~~~KP~~~~~~~~~~~l~~~~~~~v~ 260 (320)
.+.+.++.|++.|+++++---+........+..+ ..+ +-.+|.-+...-. .....--..+...++.+|+ .+++
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~-~~d-~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~via 207 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRL-PVD-YLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL---KVVA 207 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhC-CCC-EEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC---eEEE
Confidence 4789999999999999974322222222233332 221 1111211111100 1111122334445555554 4666
Q ss_pred Ee-cCHhhHHHHHHcCCeEE
Q 020871 261 VE-DSVIGLQAATRAGMACV 279 (320)
Q Consensus 261 VG-D~~~Dv~~a~~aG~~~v 279 (320)
=| ++..+.+.++..|+..+
T Consensus 208 ~gVe~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 208 EGVETEEQLELLRELGCDYV 227 (240)
T ss_pred EecCCHHHHHHHHHcCCCee
Confidence 66 77789999999999765
No 417
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.71 E-value=92 Score=24.00 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+.+.+.++.++++|.++..+|+.....+
T Consensus 90 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 90 GNSKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 3567899999999999999999998766433
No 418
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=26.58 E-value=49 Score=29.97 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCccEEEEecCCccccch
Q 020871 64 SQSLQALIFDCDGVIIESE 82 (320)
Q Consensus 64 ~~~~k~viFD~DGTL~d~~ 82 (320)
..++.+|-||+|+||....
T Consensus 24 l~~i~~~GfdmDyTL~~Y~ 42 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYN 42 (424)
T ss_pred hhcCcEEeeccccchhhhc
Confidence 4579999999999998654
No 419
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=26.57 E-value=3.6e+02 Score=22.14 Aligned_cols=98 Identities=13% Similarity=0.119 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCc-hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCH--------HHHHHHHHHcCC
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAAT-KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDP--------SIYVTAAKRLGI 253 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~-~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~--------~~~~~~~~~l~~ 253 (320)
.+.+++.+--.++-.++++-.+- .-..+++..+..|+... ..+++..-+-...+.. ..-+..+.++++
T Consensus 26 kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~---~pIL~~plMLhega~ass~lErieg~~~~~l~~~~i 102 (243)
T COG4821 26 KAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPI---KPILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQI 102 (243)
T ss_pred HHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCcccc---ccccCChhhhcccccccchhHhhhhHHHHHHHHhcC
Confidence 34455555555556677765444 44445555665566543 3344332111111111 134556788999
Q ss_pred CCCCEEEE----ecCHhhHHHHHH---cCCeEEEEeC
Q 020871 254 SEKDCLVV----EDSVIGLQAATR---AGMACVITYT 283 (320)
Q Consensus 254 ~~~~~v~V----GD~~~Dv~~a~~---aG~~~v~v~~ 283 (320)
.+.++++| |-++-.+++|.. -|+..|.+.+
T Consensus 103 ~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTS 139 (243)
T COG4821 103 RPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTS 139 (243)
T ss_pred CCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEeh
Confidence 99998876 333346666654 5888877754
No 420
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=26.55 E-value=1.7e+02 Score=22.09 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC----------------CCCCCCCHHHHHHHHH
Q 020871 186 RLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD----------------VKQKKPDPSIYVTAAK 249 (320)
Q Consensus 186 ~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~----------------~~~~KP~~~~~~~~~~ 249 (320)
.+...|+..|+.-+||......... .-.|=-.| .|.++.+.. +...+|..+ |..+++
T Consensus 3 ~v~~~Lr~~Gy~AaiCkS~W~~s~~----~p~G~yey--idV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~-Y~~ll~ 75 (131)
T TIGR01615 3 IVMSLLRSLGYDAAICKSKWDSSGD----IPAGKYEY--IDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEE-YKRLLE 75 (131)
T ss_pred hHHHHHHHCCCCeeeEEeecCCCCC----CCCCceee--EEEEecCCCCCCcceEEEeccchhhceecCCCHH-HHHHHH
Confidence 4667899999999999765433221 00122233 666555431 233455544 788887
Q ss_pred HcCCCCCCEEEEecCH
Q 020871 250 RLGISEKDCLVVEDSV 265 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~ 265 (320)
.+- .+|||-..
T Consensus 76 ~LP-----~vFVG~~~ 86 (131)
T TIGR01615 76 SLP-----EVFVGTTE 86 (131)
T ss_pred hCC-----cceECCHH
Confidence 764 38888654
No 421
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=26.53 E-value=4.5e+02 Score=23.23 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHCC--CcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC----------CCCCCCCCCHHHHHHHHH
Q 020871 182 PGVLRLMDEAKAAG--KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG----------DDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 182 ~g~~~~l~~L~~~g--~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~----------~~~~~~KP~~~~~~~~~~ 249 (320)
+.+.++++.+++.+ +++.+-+..+.+... .+.+. |.+ .+..+ ...+.+.|....+..+.+
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~-~l~~a-GaD------~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~ 191 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR-DLIDA-GAD------GVKVGIGPGSICTTRIVTGVGVPQATAVADVAA 191 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCCCCHHHHH-HHHhc-CCC------EEEECCCCCcCcccceeCCCCCCHHHHHHHHHH
Confidence 56788899999875 444432333334333 33333 543 33321 112345566555555554
Q ss_pred HcCCCCCCEEEEecC----HhhHHHHHHcCCeEEEEeCCC
Q 020871 250 RLGISEKDCLVVEDS----VIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~----~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
...-. .+=+|.|+ ..|+..|..+|..+|++.+..
T Consensus 192 ~~~~~--~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~f 229 (325)
T cd00381 192 AARDY--GVPVIADGGIRTSGDIVKALAAGADAVMLGSLL 229 (325)
T ss_pred HHhhc--CCcEEecCCCCCHHHHHHHHHcCCCEEEecchh
Confidence 43210 12244554 259999999999999985443
No 422
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.11 E-value=49 Score=22.40 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=14.5
Q ss_pred CccEEEEecCCccccchHH
Q 020871 66 SLQALIFDCDGVIIESEHL 84 (320)
Q Consensus 66 ~~k~viFD~DGTL~d~~~~ 84 (320)
..-.++++-|||++|.+..
T Consensus 39 ~~~~lvL~eDGT~VddEey 57 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDEEY 57 (78)
T ss_dssp STCEEEETTTTCBESSCHH
T ss_pred cCcEEEEeCCCcEEccHHH
Confidence 3445788999999997643
No 423
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=86 Score=25.82 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCCCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 176 GTVEPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
+.....++..++++.|++.|+++.+=||++....
T Consensus 80 GEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~ 113 (212)
T COG0602 80 GEPLLQPNLLELLELLKRLGFRIALETNGTIPVW 113 (212)
T ss_pred CcCCCcccHHHHHHHHHhCCceEEecCCCCcccc
Confidence 4444567999999999999999999999886543
No 424
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.74 E-value=3.6e+02 Score=23.95 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=63.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCch-hhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHH----HHHHHHHcCCCCCCEE
Q 020871 185 LRLMDEAKAAGKKVAVCSAATK-SSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSI----YVTAAKRLGISEKDCL 259 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~----~~~~~~~l~~~~~~~v 259 (320)
.++|+.+.+.|.++.+-|+-.. +.++..++-+ ......|.++-.|-...+-|-.++ +..+.+.+++ .+
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~~ei~~av~~~---r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~----~v 209 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATIEEIEEAVAIL---RENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNA----IV 209 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccHHHHHHHHHHH---HhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCC----cc
Confidence 5678888888888888776542 2233333332 111113445555544445454433 3444455544 45
Q ss_pred EEecCHhhHH---HHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 260 VVEDSVIGLQ---AATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 260 ~VGD~~~Dv~---~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
-+.|+.-++. +|.+.|...+ ..-.......+++++.. -+++++++++++.+.+
T Consensus 210 GlSDHT~g~~a~l~AvALGA~vi--EKHFtldk~~~GpD~~f----SldP~efk~mv~~ir~ 265 (347)
T COG2089 210 GLSDHTLGILAPLAAVALGASVI--EKHFTLDKSREGPDHAF----SLDPDEFKEMVDAIRQ 265 (347)
T ss_pred ccccCccchhHHHHHHHhcccce--eeeeeecCCCCCCCcce----ecCHHHHHHHHHHHHH
Confidence 6667775544 3444565533 22222223333444332 3478888888876643
No 425
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=25.72 E-value=40 Score=27.86 Aligned_cols=31 Identities=3% Similarity=-0.110 Sum_probs=24.4
Q ss_pred CCCEEEEecCH----hhHHHHHHcCCeEEEEeCCC
Q 020871 255 EKDCLVVEDSV----IGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 255 ~~~~v~VGD~~----~Dv~~a~~aG~~~v~v~~~~ 285 (320)
.++++||||.. ||.+.....|..++-|.++.
T Consensus 175 ~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~ 209 (220)
T PF03332_consen 175 FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPE 209 (220)
T ss_dssp -SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHH
T ss_pred cceEEEEehhccCCCCCceeeecCCccEEEeCCHH
Confidence 68999999986 89999999898888886654
No 426
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.72 E-value=4.8e+02 Score=23.23 Aligned_cols=121 Identities=12% Similarity=0.173 Sum_probs=63.4
Q ss_pred HHHHHHHHHCCCcEEEEeCCch-hhHHHHHHHh--hCCccccCcceEE--eC--CCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAATK-SSVILCLENL--IGMERFEGLDCFL--AG--DDVKQKKPDPSIYVTAAKRLGISEKD 257 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~-~~~~~~l~~~--~~l~~~~~fd~v~--~~--~~~~~~KP~~~~~~~~~~~l~~~~~~ 257 (320)
.++|+.+.+.|.++.+-|+... +.+...++.+ .|-.. -+.++ |. .......-+-..+..+.+.++++
T Consensus 123 ~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~---~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~p--- 196 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPD---SNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLP--- 196 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCc---CcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCC---
Confidence 6899999999999888777642 2233333332 12221 01233 22 22222233445566666667642
Q ss_pred EEEEecCHhhHHHHH---HcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 258 CLVVEDSVIGLQAAT---RAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 258 ~v~VGD~~~Dv~~a~---~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
|.+-|+..++.++. ..|.. ++..-......+.+++ ...-+++++|.++++++..
T Consensus 197 -VG~SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D----~~~Sl~p~el~~lv~~ir~ 253 (329)
T TIGR03569 197 -VGYSDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPD----HKASLEPDELKEMVQGIRN 253 (329)
T ss_pred -EEECCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCC----hhhcCCHHHHHHHHHHHHH
Confidence 33456665554443 44665 3333333333333333 2345688999999987643
No 427
>PLN02580 trehalose-phosphatase
Probab=25.56 E-value=1.2e+02 Score=27.50 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=30.8
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE 214 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~ 214 (320)
..+.+++.++|+.|.+. .+++|+|+.....++..+.
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVG 175 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhC
Confidence 46788999999999988 6899999999887776664
No 428
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=25.45 E-value=3.8e+02 Score=22.00 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHHHHHcC-CeEEEEeCC
Q 020871 238 KPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATRAG-MACVITYTS 284 (320)
Q Consensus 238 KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~a~~aG-~~~v~v~~~ 284 (320)
.|+.+.+..+++..++ .++.-|+-. .|+..+.+.| +..|++.+.
T Consensus 176 G~d~~~i~~l~~~~~i---pvia~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 176 GPNVEATRELAAAVPI---PVIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCCHHHHHHHHHhCCC---CEEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 3888899999887664 367777443 6999999988 999988665
No 429
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.38 E-value=3.9e+02 Score=22.03 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=44.4
Q ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHHHh--hCCccccCcceEEeCCCCCCCCCCH-HHHHHHHHHcCCCCCCEEEEec
Q 020871 187 LMDEAKAAGKKVAVCSAATKSSVILCLENL--IGMERFEGLDCFLAGDDVKQKKPDP-SIYVTAAKRLGISEKDCLVVED 263 (320)
Q Consensus 187 ~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~--~~l~~~~~fd~v~~~~~~~~~KP~~-~~~~~~~~~l~~~~~~~v~VGD 263 (320)
+++.|.+.++ +.|+.+.+.+......+.+ .|+..+ +..+ .-|.. +.+..+.++++-.|+ +.||=
T Consensus 6 ~~~~l~~~~v-i~vir~~~~~~a~~~~~al~~~Gi~~i---Eit~-------~~~~a~~~i~~l~~~~~~~p~--~~vGa 72 (213)
T PRK06552 6 ILTKLKANGV-VAVVRGESKEEALKISLAVIKGGIKAI---EVTY-------TNPFASEVIKELVELYKDDPE--VLIGA 72 (213)
T ss_pred HHHHHHHCCE-EEEEECCCHHHHHHHHHHHHHCCCCEE---EEEC-------CCccHHHHHHHHHHHcCCCCC--eEEee
Confidence 4566666654 6667777766666666554 234322 2222 22332 345555555543333 44555
Q ss_pred CH----hhHHHHHHcCCeEEE
Q 020871 264 SV----IGLQAATRAGMACVI 280 (320)
Q Consensus 264 ~~----~Dv~~a~~aG~~~v~ 280 (320)
+. .+++.|..+|..++.
T Consensus 73 GTV~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIV 93 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEE
Confidence 43 477778888888765
No 430
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.04 E-value=3.9e+02 Score=21.95 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHHHHHcCCeEEEEeCC
Q 020871 239 PDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 239 P~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~a~~aG~~~v~v~~~ 284 (320)
|+.+.+..+.+..+++ ++.-|+=. .|+..+...|+..+++.+.
T Consensus 177 ~~~~~i~~i~~~~~ip---vi~~GGi~~~~di~~~~~~Ga~gv~vg~~ 221 (234)
T cd04732 177 PNFELYKELAAATGIP---VIASGGVSSLDDIKALKELGVAGVIVGKA 221 (234)
T ss_pred CCHHHHHHHHHhcCCC---EEEecCCCCHHHHHHHHHCCCCEEEEeHH
Confidence 7778888888877653 67677544 6899999999999988654
No 431
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.03 E-value=1.6e+02 Score=21.86 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred cceEEeC--CCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHHHHH
Q 020871 225 LDCFLAG--DDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATR 273 (320)
Q Consensus 225 fd~v~~~--~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~a~~ 273 (320)
|..++|. +.-..+.|.-.....++++.|+....+=+.|.+. .||+..+.
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~ 81 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQR 81 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHH
Confidence 5566664 2233567888889999999999877777778777 47776655
No 432
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=24.96 E-value=2.6e+02 Score=19.84 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCcc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMER 221 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~ 221 (320)
...-|..+.++.++.-.-++.|+..+.+......++....+..
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyYAkLs~ 61 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYYAKLSD 61 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHcC
Confidence 4667999999999998888888777777667777766433443
No 433
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.95 E-value=4.4e+02 Score=22.54 Aligned_cols=99 Identities=7% Similarity=-0.008 Sum_probs=51.9
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhhCCccccCcceEEeCCC-CCCCCCCHHHHHHHHHHcCCCCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDCFLAGDD-VKQKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP~~~~~~~~~~~l~~~~~ 256 (320)
++++..++++.++++|+..+.+-+.. .+.+..+.+.. +.| =-+++... ++.....+..+...++++.-..+
T Consensus 129 P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a---~gF---IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~ 202 (263)
T CHL00200 129 PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA---PGC---IYLVSTTGVTGLKTELDKKLKKLIETIKKMTN 202 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCc---EEEEcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 55788899999999998876644333 23333333332 222 22222222 22221222333444433322223
Q ss_pred CEEEEecCHh---hHHHHHHcCCeEEEEeCC
Q 020871 257 DCLVVEDSVI---GLQAATRAGMACVITYTS 284 (320)
Q Consensus 257 ~~v~VGD~~~---Dv~~a~~aG~~~v~v~~~ 284 (320)
.-++||=+.+ ++..+..+|...+.|.+.
T Consensus 203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 203 KPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred CCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 3356676665 777777788988877443
No 434
>PLN02151 trehalose-phosphatase
Probab=24.87 E-value=1.3e+02 Score=27.07 Aligned_cols=35 Identities=9% Similarity=-0.040 Sum_probs=29.6
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL 213 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l 213 (320)
..+.|++.+.|+.|.+ +++++|+|+.....+...+
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~ 153 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFV 153 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHc
Confidence 4688999999999995 5799999999988776655
No 435
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=24.68 E-value=6.5e+02 Score=24.44 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=60.0
Q ss_pred CCChhHHHHHHHH---HHCCCcEEEEeCCchhh------HHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHH
Q 020871 179 EPRPGVLRLMDEA---KAAGKKVAVCSAATKSS------VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAK 249 (320)
Q Consensus 179 ~~~~g~~~~l~~L---~~~g~~i~i~Tn~~~~~------~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~ 249 (320)
..++++.+....+ -.++-+|.|++..+.+- +...++.+ |... ...++...-....-.+++.++.+.+
T Consensus 50 ~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~-g~~~---~~~~IP~R~~eGYGl~~~~i~~~~~ 125 (575)
T PRK11070 50 QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSL-GCSN---VDYLVPNRFEDGYGLSPEVVDQAHA 125 (575)
T ss_pred HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHc-CCCc---eEEEeCCCCcCCCCCCHHHHHHHHh
Confidence 3456666666655 44678899999876432 23344443 4421 1223332212223456677777655
Q ss_pred HcCCCCCCEEEEecCHhhHHHH---HHcCCeEEEEeCCCCchhhccccc
Q 020871 250 RLGISEKDCLVVEDSVIGLQAA---TRAGMACVITYTSSTAEQDFKDAI 295 (320)
Q Consensus 250 ~l~~~~~~~v~VGD~~~Dv~~a---~~aG~~~v~v~~~~~~~~~l~~~~ 295 (320)
. |. +=+|.|+-+.++++.. +..|+.+|.... +...+.++.+.
T Consensus 126 ~-~~--~LiItvD~Gi~~~e~i~~a~~~gidvIVtDH-H~~~~~~P~a~ 170 (575)
T PRK11070 126 R-GA--QLIVTVDNGISSHAGVAHAHALGIPVLVTDH-HLPGETLPAAD 170 (575)
T ss_pred c-CC--CEEEEEcCCcCCHHHHHHHHHCCCCEEEECC-CCCCCCCCCCe
Confidence 3 43 3467777777665554 889999775533 33334444333
No 436
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.54 E-value=1.6e+02 Score=31.00 Aligned_cols=96 Identities=18% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCCc---EEEEeCCchhhHHHHHHHhhCCccccCcceEEe-CCCCCCCCCCHHHHHHHHHH---cC-CCCC
Q 020871 185 LRLMDEAKAAGKK---VAVCSAATKSSVILCLENLIGMERFEGLDCFLA-GDDVKQKKPDPSIYVTAAKR---LG-ISEK 256 (320)
Q Consensus 185 ~~~l~~L~~~g~~---i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~-~~~~~~~KP~~~~~~~~~~~---l~-~~~~ 256 (320)
.++|.+.|..|+. ++-+.+.+...++...+.+ ++... +..|=. +.+....-| -+|...-.. .. -+..
T Consensus 481 ~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~-~~~~~--~k~vd~~a~e~~~~~~--~~y~~~~~~~~~~~~~~~~ 555 (1050)
T TIGR01369 481 PELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKEL-GIMPV--YKRVDTCAAEFEAQTP--YLYSTYEGERDDVPFTDKK 555 (1050)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHC-CCeeE--EEeecCCCCcccCCCC--eeEecCCCCCCcccCCCCc
Confidence 4778888888864 5556666666677666665 66543 333211 122211111 111111111 00 1235
Q ss_pred CEEEEecCHhh--------------HHHHHHcCCeEEEEeCCC
Q 020871 257 DCLVVEDSVIG--------------LQAATRAGMACVITYTSS 285 (320)
Q Consensus 257 ~~v~VGD~~~D--------------v~~a~~aG~~~v~v~~~~ 285 (320)
.++++|-+++. +.++++.|+.+++++...
T Consensus 556 kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~np 598 (1050)
T TIGR01369 556 KVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNP 598 (1050)
T ss_pred eEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 79999998764 688899999999997753
No 437
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=24.32 E-value=4.8e+02 Score=22.71 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC-CCCCCC---CCCHHHHHHHHHHcCCCCCCE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG-DDVKQK---KPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~-~~~~~~---KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.+.++|...++.||-+..+.-.+.+.+..+++..-.... -.++.. ...... +.-..+...++++.+++ =+
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s----PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--Va 78 (286)
T PRK12738 5 STKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRS----PVILAGTPGTFKHIALEEIYALCSAYSTTYNMP--LA 78 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCC----CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EE
Confidence 367888999999999988777777777766655411111 122221 111111 11123455556666663 24
Q ss_pred EEEec--CHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 259 LVVED--SVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 259 v~VGD--~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
++.+= +...+..|..+|+..||+......
T Consensus 79 lHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 79 LHLDHHESLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred EECCCCCCHHHHHHHHHcCCCeEeecCCCCC
Confidence 44432 234677777889999999665443
No 438
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.25 E-value=4.7e+02 Score=22.66 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=57.4
Q ss_pred HHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCC-CCCCCC---CHHHHHHHHHHcCCCCCCEE
Q 020871 184 VLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDD-VKQKKP---DPSIYVTAAKRLGISEKDCL 259 (320)
Q Consensus 184 ~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~-~~~~KP---~~~~~~~~~~~l~~~~~~~v 259 (320)
+.++|+..++.||-+..+.-.+.+.+..+++..-... - -.++.... ....-+ -..+...++++..++ =++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~-s---PvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--Val 77 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMR-S---PVILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LAL 77 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhC-C---CEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 5688889999999988887777777777776541111 1 12222111 111111 123445566666663 244
Q ss_pred EEe--cCHhhHHHHHHcCCeEEEEeCCCCc
Q 020871 260 VVE--DSVIGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 260 ~VG--D~~~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
+.+ .+..++..|..+|+..||+......
T Consensus 78 HLDHg~~~e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 78 HLDHHESLDDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEeecCCCCC
Confidence 442 3346788888899999999765443
No 439
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=24.16 E-value=1.1e+02 Score=22.63 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCc
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAAT 205 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~ 205 (320)
..+|-..+++++.++.|+++++|.-+-
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 577999999999999999999997543
No 440
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=23.87 E-value=5.9e+02 Score=23.60 Aligned_cols=81 Identities=17% Similarity=0.099 Sum_probs=39.5
Q ss_pred CCcEEEEeCCch-hhHHHHHHHhhCCccccCcceEEeCCCCC---------CCCCCHHHHHHHHHHcCCCCCCEEEEecC
Q 020871 195 GKKVAVCSAATK-SSVILCLENLIGMERFEGLDCFLAGDDVK---------QKKPDPSIYVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 195 g~~i~i~Tn~~~-~~~~~~l~~~~~l~~~~~fd~v~~~~~~~---------~~KP~~~~~~~~~~~l~~~~~~~v~VGD~ 264 (320)
|.+++|....+. ..+...+..+ |+. ...+++..... .--.+..-+...+++.+. -+++|.+
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~el-Gm~----v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~----dliig~s 381 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSM-GAQ----IVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGA----DLLITNS 381 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC-CCE----EEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCC----CEEEECc
Confidence 778887775543 2333444444 554 23333332100 001333334444444431 2556776
Q ss_pred HhhHHHHHHcCCeEEEEeCCC
Q 020871 265 VIGLQAATRAGMACVITYTSS 285 (320)
Q Consensus 265 ~~Dv~~a~~aG~~~v~v~~~~ 285 (320)
.. -..|++.|++.+-+..|.
T Consensus 382 ~~-k~~A~~l~ip~ir~g~Pi 401 (432)
T TIGR01285 382 HG-RALAQRLALPLVRAGFPL 401 (432)
T ss_pred ch-HHHHHHcCCCEEEecCCc
Confidence 43 567777787776554443
No 441
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=23.74 E-value=3.5e+02 Score=24.70 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=54.1
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
.-.|++..++..+.+- +++++.|.+.......++..+ +-.++ |...+.... +.-+.+. |..-+..++.+.+.+
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l-~~~k~--~~~~lfr~s--c~~~~G~-~ikDis~i~r~l~~v 324 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDIL-DSDKV--FSHRLFRES--CVSYLGV-YIKDISKIGRSLDKV 324 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhc-cccce--eehhhhccc--ceeccCc-hhhhHHhhccCCCce
Confidence 5678999999999887 899999998877777766554 32223 232222111 1223333 344555677788999
Q ss_pred EEEecCHhh
Q 020871 259 LVVEDSVIG 267 (320)
Q Consensus 259 v~VGD~~~D 267 (320)
++|.+++.=
T Consensus 325 iiId~~p~S 333 (390)
T COG5190 325 IIIDNSPAS 333 (390)
T ss_pred EEeeCChhh
Confidence 999999963
No 442
>PRK08005 epimerase; Validated
Probab=23.62 E-value=4.2e+02 Score=21.82 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceE--EeCC-CCCCCCCCHHHHHHHHHHcCCCCCCE
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCF--LAGD-DVKQKKPDPSIYVTAAKRLGISEKDC 258 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v--~~~~-~~~~~KP~~~~~~~~~~~l~~~~~~~ 258 (320)
+...++++.+|+.|.+.++.=|.... ...+..-+ . . .|.+ .+.+ ..+..|=-+..+.++.+.-..-++.-
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp-~~~i~~~l-~---~--vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~ 165 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATP-LLPYRYLA-L---Q--LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAE 165 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCC-HHHHHHHH-H---h--cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCC
Confidence 45678999999999999998876543 32222222 1 1 2333 2222 12233444555566554322222223
Q ss_pred EEEecCHh--hHHHHHHcCCeEEEEe
Q 020871 259 LVVEDSVI--GLQAATRAGMACVITY 282 (320)
Q Consensus 259 v~VGD~~~--Dv~~a~~aG~~~v~v~ 282 (320)
+-|+-+.+ .+....++|...+.+.
T Consensus 166 I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 166 CWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 77877775 6778889999865543
No 443
>PLN02334 ribulose-phosphate 3-epimerase
Probab=23.62 E-value=4.2e+02 Score=21.87 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCC-CCCCE
Q 020871 182 PGVLRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGI-SEKDC 258 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~-~~~~~ 258 (320)
....+.++.+++.|.++++..|.. .+.....++. .+++.+ .+-.+..+. ...+..+..+..+.+--.. ....+
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~-~~~Dyi-~~~~v~pg~--~~~~~~~~~~~~i~~~~~~~~~~~I 177 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEK-GLVDMV-LVMSVEPGF--GGQSFIPSMMDKVRALRKKYPELDI 177 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhc-cCCCEE-EEEEEecCC--CccccCHHHHHHHHHHHHhCCCCcE
Confidence 345788889999999999988742 2222222211 013322 111222111 1122334444444322111 11234
Q ss_pred EEE-ecCHhhHHHHHHcCCeEEEEeCC
Q 020871 259 LVV-EDSVIGLQAATRAGMACVITYTS 284 (320)
Q Consensus 259 v~V-GD~~~Dv~~a~~aG~~~v~v~~~ 284 (320)
+++ |=+..++.....+|...+.+.+.
T Consensus 178 ~a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 178 EVDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 444 34557999999999998877554
No 444
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.59 E-value=4.6e+02 Score=22.23 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred CCCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHH-HhhCCccccCcceEEeCCCCCCCCC-----------CHHHHH
Q 020871 178 VEPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLE-NLIGMERFEGLDCFLAGDDVKQKKP-----------DPSIYV 245 (320)
Q Consensus 178 ~~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~-~~~~l~~~~~fd~v~~~~~~~~~KP-----------~~~~~~ 245 (320)
+....+..++.+.+.+.+.+.+++|-+... +..... ...+- .+ +-.++-..+...+-| +.+.=.
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~-L~~f~~~~~~~~-r~--~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~ 187 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSKN-LPPFVPAPLPGE-RL--FARVLPTPESALGFPPKNIIAMQGPFSKELNR 187 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchhh-HHHHhhcccCCC-EE--EEEECCCccccCCCChhhEEEEeCCCCHHHHH
Confidence 566778888888888877555555555544 333322 21121 22 222332222221111 122345
Q ss_pred HHHHHcCCCCCCEEEEecCH-----hhHHHHHHcCCeEEEEeCCCCc
Q 020871 246 TAAKRLGISEKDCLVVEDSV-----IGLQAATRAGMACVITYTSSTA 287 (320)
Q Consensus 246 ~~~~~l~~~~~~~v~VGD~~-----~Dv~~a~~aG~~~v~v~~~~~~ 287 (320)
.++++++++ +++-=||. .=+++|+..|++++++.++...
T Consensus 188 al~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 188 ALFRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred HHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC
Confidence 567778764 55554443 2488999999999999887543
No 445
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=23.39 E-value=1.7e+02 Score=21.96 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEe
Q 020871 190 EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVE 262 (320)
Q Consensus 190 ~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VG 262 (320)
.|++.||....+.+...-..+ ... .+..- ...++.+++... .-+| .|..+++.+++++++|.++-
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~---~~i-~lp~~--~rLliV~~~~~~-~~~~-L~~dVLrsl~L~~~q~~~lt 71 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE---IAI-SLPEH--IRLVIVAEELPA-LTDP-LLQDVLRSLTLSPDQVLCLT 71 (128)
T ss_pred HHHHcCCceEEecCccccCCC---ccc-cCCcc--ceEEEEeCCCCc-ccCh-HHHHHHHHcCCCHHHeeeeC
Confidence 477889988888765432111 111 22222 455666665542 2234 89999999999999999763
No 446
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=23.36 E-value=4.4e+02 Score=22.47 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=22.2
Q ss_pred HHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeC
Q 020871 189 DEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAG 231 (320)
Q Consensus 189 ~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~ 231 (320)
+.+++.||.+.+++.+.....+..++.+. ..- +|.++..
T Consensus 25 ~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~--~~~--vDGiI~~ 63 (279)
T PF00532_consen 25 QEAREHGYQLLLCNTGDDEEKEEYIELLL--QRR--VDGIILA 63 (279)
T ss_dssp HHHHHTTCEEEEEEETTTHHHHHHHHHHH--HTT--SSEEEEE
T ss_pred HHHHHcCCEEEEecCCCchHHHHHHHHHH--hcC--CCEEEEe
Confidence 35788899988765444433445555542 122 5665554
No 447
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=23.05 E-value=5.7e+02 Score=23.20 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHHCCCcEEE-EeCCchhhHHHHHH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAV-CSAATKSSVILCLE 214 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i-~Tn~~~~~~~~~l~ 214 (320)
-.+|..++++.|+++|+.+.+ =||.+.+.....++
T Consensus 175 E~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~ 210 (380)
T TIGR00221 175 EEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFK 210 (380)
T ss_pred CCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHH
Confidence 367899999999999998887 56777666655554
No 448
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=23.02 E-value=6.3e+02 Score=23.69 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=4.5
Q ss_pred CCcEEEEeC
Q 020871 195 GKKVAVCSA 203 (320)
Q Consensus 195 g~~i~i~Tn 203 (320)
|.++++..+
T Consensus 335 GKrv~i~~g 343 (466)
T TIGR01282 335 GKTVMLYVG 343 (466)
T ss_pred CCEEEEECC
Confidence 455555543
No 449
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=23.00 E-value=5.3e+02 Score=22.82 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhh---HHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSS---VILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCL 259 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~---~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v 259 (320)
...++++.|.+.|++++++.+..... .+.+.+.. .-... .+ -.+|-+-.-+..++++.. +
T Consensus 203 ~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~-~~~~~--~~--------l~g~~sL~el~ali~~a~------l 265 (352)
T PRK10422 203 KFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGC-QTPPV--TA--------LAGKTTFPELGALIDHAQ------L 265 (352)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhc-CCCcc--cc--------ccCCCCHHHHHHHHHhCC------E
Confidence 56788888888888877664432211 12222211 10010 11 123333344455555433 5
Q ss_pred EEecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 260 VVEDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 260 ~VGD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
+||...--+-.|...|.++|.+-++..
T Consensus 266 ~v~nDSGp~HlAaA~g~P~v~lfGpt~ 292 (352)
T PRK10422 266 FIGVDSAPAHIAAAVNTPLICLFGATD 292 (352)
T ss_pred EEecCCHHHHHHHHcCCCEEEEECCCC
Confidence 677777678899999999887765543
No 450
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=22.95 E-value=1.3e+02 Score=24.20 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
-.+.+.+.++.++++|.++..+|+.....+
T Consensus 123 ~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 123 NSGNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 467899999999999999999999865433
No 451
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=22.95 E-value=1.6e+02 Score=25.16 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=24.4
Q ss_pred hhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 266 IGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 266 ~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
.=+++|...|++++++.++.... +.-...+++++.+.+++++
T Consensus 214 eKi~AA~~lgi~vivI~RP~~~~----------~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 214 EKVKAAEALGINVIRIARPQTIP----------GVAIFDDISQLNQFVARLL 255 (256)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCC----------CCccCCCHHHHHHHHHHhc
Confidence 34677777777777776663210 1111236777777777654
No 452
>PLN02257 phosphoribosylamine--glycine ligase
Probab=22.82 E-value=3.3e+02 Score=25.25 Aligned_cols=57 Identities=12% Similarity=0.088 Sum_probs=32.2
Q ss_pred ecCCccccchHHHHHHHHHHHHhcccCCCCccccCCCCChhHHHHHHHHhcCChhhHHHHHHhcCCCCc
Q 020871 73 DCDGVIIESEHLHRQAYNDAFSHFNVRCDPSSQQSLNWDPEFYDVLQNQIGGGKPKMRWYFKEHGWPSS 141 (320)
Q Consensus 73 D~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 141 (320)
|+|.+++..+......+.+.+++.|++.... ......+...+......+.++|++..
T Consensus 62 ~id~vvvg~E~~lv~~~~d~l~~~Gi~~~Gp------------s~~aa~l~~dK~~~K~~l~~~GIptp 118 (434)
T PLN02257 62 GVGLVVVGPEAPLVAGLADDLVKAGIPTFGP------------SAEAAALEGSKNFMKDLCDKYKIPTA 118 (434)
T ss_pred CCCEEEECCchHHHHHHHHHHHHCCCCEECC------------hHHHHHHHcCHHHHHHHHHHcCCCCC
Confidence 4555555555545456666667777653110 01112334566667788888888753
No 453
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=22.56 E-value=5.7e+02 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHH---HcCCCCCC-EEEEecCH-hhHHHHHH----cCCeEEEEeC
Q 020871 238 KPDPSIYVTAAK---RLGISEKD-CLVVEDSV-IGLQAATR----AGMACVITYT 283 (320)
Q Consensus 238 KP~~~~~~~~~~---~l~~~~~~-~v~VGD~~-~Dv~~a~~----aG~~~v~v~~ 283 (320)
-|.-+.+..+++ ..+++.++ ++.||.+. .|+..+.+ -|++.+.|++
T Consensus 64 ~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 64 HKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecC
Confidence 344455555544 34665444 55799988 59886654 3888888876
No 454
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=22.53 E-value=4.9e+02 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHCCC-cEEEEeC
Q 020871 182 PGVLRLMDEAKAAGK-KVAVCSA 203 (320)
Q Consensus 182 ~g~~~~l~~L~~~g~-~i~i~Tn 203 (320)
.+...+.+.|.+.|+ +++++++
T Consensus 162 ~~~~~a~~~L~~~G~~~I~~i~~ 184 (343)
T PRK10727 162 YGAWLATRHLIQQGHTRIGYLCS 184 (343)
T ss_pred HHHHHHHHHHHHCCCccEEEEeC
Confidence 355666667777765 4666653
No 455
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=22.39 E-value=1.8e+02 Score=21.81 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH
Q 020871 190 EAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (320)
Q Consensus 190 ~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~ 265 (320)
.|++.||..+.+.....-.. ... ..+..- ...++.+++.... -++ .|..+++.+++++++|.++-=..
T Consensus 8 ~LqeMGItqW~Lr~P~~L~g---~~~-i~lp~~--~rLliVs~~~p~~-~~~-L~~dVLrsl~L~~~q~~~ltpeq 75 (128)
T PF03603_consen 8 LLQEMGITQWQLRRPEVLQG---EIA-ISLPES--CRLLIVSDELPQL-DDP-LFQDVLRSLKLTPEQVLHLTPEQ 75 (128)
T ss_dssp HHHHCT--EEEES-GGGTS-----S------TT----EEEE-SS---T-TSH-HHHHHHHHTT--GGGEEEE-CCG
T ss_pred HHHHcCCCeEEeCCccccCC---Ccc-ccCccc--ceEEEEeCCCCCc-cCh-HHHHHHHHcCCCHHHhhccCHHH
Confidence 57888999998876533211 101 122222 5667777665533 234 99999999999999999885433
No 456
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.32 E-value=1.6e+02 Score=25.13 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=40.2
Q ss_pred eEEeCCCCCCCC---CCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHc---CCeEEEEeCCCC
Q 020871 227 CFLAGDDVKQKK---PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRA---GMACVITYTSST 286 (320)
Q Consensus 227 ~v~~~~~~~~~K---P~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~a---G~~~v~v~~~~~ 286 (320)
.+..++|+-.++ -+..++..-+..+|++-.+...|||...++..+-+. -...|.+++|-.
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 444556654332 345667777778899999999999999877655442 256666666544
No 457
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=22.19 E-value=1.7e+02 Score=20.39 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=26.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCchhhHHHHHHHh
Q 020871 185 LRLMDEAKAAGKKVAVCSAATKSSVILCLENL 216 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~ 216 (320)
..+.+.|.++|++++.-+....+...+.++.+
T Consensus 42 ~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~l 73 (89)
T PF08444_consen 42 YHLAQYLHKLGFPFYGHVDEDNEASQRLSKSL 73 (89)
T ss_pred HHHHHHHHHCCCCeEeehHhccHHHHHHHHHC
Confidence 45667899999999998888888788888776
No 458
>PRK08304 stage V sporulation protein AD; Validated
Probab=22.18 E-value=3e+02 Score=24.50 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=40.4
Q ss_pred hCCccccCcceEEeCCCCCCC---CCCH----HHHHHHHHHcCCCCC--CEEEEecCHhhH----HHHHHcCCeEEEEeC
Q 020871 217 IGMERFEGLDCFLAGDDVKQK---KPDP----SIYVTAAKRLGISEK--DCLVVEDSVIGL----QAATRAGMACVITYT 283 (320)
Q Consensus 217 ~~l~~~~~fd~v~~~~~~~~~---KP~~----~~~~~~~~~l~~~~~--~~v~VGD~~~Dv----~~a~~aG~~~v~v~~ 283 (320)
..|..+ ||.++.-.-.+.. |... +....++++-|++++ +.+++||..+-. ..++..|+++..++.
T Consensus 32 gpl~~~--fd~~~~d~~~Ge~swEkAeseLa~eAa~~ALekAGI~~~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~g 109 (337)
T PRK08304 32 GPLGKY--FDKILDDDYCGEKSWEKAERKMMEDAIQQALQKANLKKSDIDYLLAGDLLNQIISANFAARELGIPFLGLYG 109 (337)
T ss_pred CCChhh--CCeEecccccCCcCccccHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCcchHHHHHHHhCCcEEEEec
Confidence 356777 8988765444433 2232 345666777788886 578899875322 355667887666654
No 459
>COG2920 DsrC Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]
Probab=22.01 E-value=45 Score=23.75 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=27.9
Q ss_pred ccEEEEecCCccccchHHHHHHHHHHHHhcccCCCC
Q 020871 67 LQALIFDCDGVIIESEHLHRQAYNDAFSHFNVRCDP 102 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~ 102 (320)
-+-|..|-||-|.++...-......++++.++..+.
T Consensus 8 gk~i~~D~dGyL~~~~dW~E~vAe~lA~~e~i~LT~ 43 (111)
T COG2920 8 GKEIETDEDGYLKDSEDWSEKVAEALAEREGIELTE 43 (111)
T ss_pred CeEEeecccchhcChhhhCHHHHHHHHHHhccCccH
Confidence 467889999999999877767777777777775543
No 460
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=22.00 E-value=4.9e+02 Score=22.05 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHH
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKSSVILCLEN 215 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~ 215 (320)
+..+.|++.++.|+...++.+.+.......++-
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l 52 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATEAENFARVLAL 52 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHH
Confidence 566777888888876666655555555555543
No 461
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=21.87 E-value=1.2e+02 Score=23.44 Aligned_cols=49 Identities=8% Similarity=0.092 Sum_probs=33.3
Q ss_pred CChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCC
Q 020871 180 PRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVK 235 (320)
Q Consensus 180 ~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~ 235 (320)
++.++.++=+.|++.|+++.++.+...+.+..+.+.. ++ +.|++..+..
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~-~~------~~V~~~~~~~ 99 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEY-GA------TAVYFNEEYT 99 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHH-TE------SEEEEE---S
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhc-Cc------CeeEeccccC
Confidence 4456677778899999999999998877777777775 54 4566654443
No 462
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.82 E-value=1.4e+02 Score=24.25 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.7
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSV 209 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~ 209 (320)
.-.+.+.+.++..+++|.+++.+|+.....+
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 3567899999999999999999998776533
No 463
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=21.79 E-value=4.4e+02 Score=24.29 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=44.2
Q ss_pred EEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH--hhHHHHHHcCC
Q 020871 199 AVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV--IGLQAATRAGM 276 (320)
Q Consensus 199 ~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~--~Dv~~a~~aG~ 276 (320)
+|--|.+.. +.++|..+ |.. |+++ .| .-...+..+|++|++|||.+-.- .+++-|...|+
T Consensus 85 AVKCN~dp~-vl~~La~l-G~g----fdca--------Sk----~E~~lvl~~gv~P~riIyanpcK~~s~IkyAa~~gV 146 (448)
T KOG0622|consen 85 AVKCNSDPK-VLRLLASL-GCG----FDCA--------SK----NELDLVLSLGVSPERIIYANPCKQVSQIKYAAKHGV 146 (448)
T ss_pred eEEeCCCHH-HHHHHHHc-Ccc----ceec--------Ch----HHHHHHHhcCCChHHeEecCCCccHHHHHHHHHcCC
Confidence 344455555 55677775 654 5643 22 22446678899999999998766 69999999998
Q ss_pred eEEEE
Q 020871 277 ACVIT 281 (320)
Q Consensus 277 ~~v~v 281 (320)
..--+
T Consensus 147 ~~~tf 151 (448)
T KOG0622|consen 147 SVMTF 151 (448)
T ss_pred eEEee
Confidence 85444
No 464
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=21.78 E-value=2.6e+02 Score=20.85 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCCCChhHHHHHHHHHHC---CCcEEEEeCCchh
Q 020871 176 GTVEPRPGVLRLMDEAKAA---GKKVAVCSAATKS 207 (320)
Q Consensus 176 ~~~~~~~g~~~~l~~L~~~---g~~i~i~Tn~~~~ 207 (320)
+....+++..+.+..+.+. ++++.+.||+...
T Consensus 54 gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~ 88 (166)
T PF04055_consen 54 GEPTLHPDFIELLELLRKIKKRGIRISINTNGTLL 88 (166)
T ss_dssp STGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTH
T ss_pred cCCCcchhHHHHHHHHHHhhccccceeeeccccch
Confidence 4456778888888888876 8999999999874
No 465
>PLN02423 phosphomannomutase
Probab=21.75 E-value=1.7e+02 Score=24.60 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCchhhHHHHH
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATKSSVILCL 213 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~~~~~~~l 213 (320)
++.+...+.+++|+++ ++++++|+.........+
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~ 57 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQL 57 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHh
Confidence 5678889999999987 999999998655443333
No 466
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=21.72 E-value=6.9e+02 Score=23.60 Aligned_cols=98 Identities=14% Similarity=0.035 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHC--CCcEEEEeCCchhhHHHHHHHhhCCccccCcceE-------EeCCCCCCCCCCHHHHHHHHHHcC
Q 020871 182 PGVLRLMDEAKAA--GKKVAVCSAATKSSVILCLENLIGMERFEGLDCF-------LAGDDVKQKKPDPSIYVTAAKRLG 252 (320)
Q Consensus 182 ~g~~~~l~~L~~~--g~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v-------~~~~~~~~~KP~~~~~~~~~~~l~ 252 (320)
..+.++++.+|+. +++ +++-|.........+.+. |.+.. +.- ....-.+.+.|.......+++...
T Consensus 251 ~~~~~~i~~i~~~~~~~~-vi~g~~~t~~~~~~l~~~-G~d~i---~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVP-IVAGNVVSAEGVRDLLEA-GANII---KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred HHHHHHHHHHHHHCCCCe-EEEeccCCHHHHHHHHHh-CCCEE---EECCcCCccccCccccCCCCchHHHHHHHHHHHH
Confidence 4566777777765 232 223333333333344443 54332 211 112224456677766666654332
Q ss_pred CCCCCEEEEecCH----hhHHHHHHcCCeEEEEeCCCC
Q 020871 253 ISEKDCLVVEDSV----IGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 253 ~~~~~~v~VGD~~----~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
.. .+=+|.|+. .|+.-|..+|..+|++.+...
T Consensus 326 ~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~a 361 (475)
T TIGR01303 326 KL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFA 361 (475)
T ss_pred Hc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhc
Confidence 11 233566665 499999999999999865433
No 467
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=1.3e+02 Score=20.07 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHHcCCe
Q 020871 234 VKQKKPDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATRAGMA 277 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~aG~~ 277 (320)
+..+.|-...+..+++++.+++.....|-+..-.+..++.+|--
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnv 76 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV 76 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccce
Confidence 45667778889999999999988777777766677788888854
No 468
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=21.43 E-value=67 Score=21.06 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHcCCCCCCEEEEecC
Q 020871 244 YVTAAKRLGISEKDCLVVEDS 264 (320)
Q Consensus 244 ~~~~~~~l~~~~~~~v~VGD~ 264 (320)
...++++.|+...++|.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 455666778888888888873
No 469
>PHA00657 crystallin beta/gamma motif-containing protein
Probab=21.42 E-value=4.4e+02 Score=28.27 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=33.5
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 020871 144 FDNPPVTDDDQAKLIDLIQDWKTERYQQIIKSGTVEPRPGVLRLMDEAK 192 (320)
Q Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 192 (320)
+.....+......++..++.|....|..+- .-.+.+.+++..+..+|-
T Consensus 873 L~eGkAPS~eLkgvF~RFR~wL~~vY~~lk-~lnVeLs~eVr~VfDRmL 920 (2052)
T PHA00657 873 LFEGKAPSIEMHGLFQRFRAWLLNVYRDLK-ALNVELTPEVRNVFDRML 920 (2052)
T ss_pred HHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HccCccCHHHHHHHHHHh
Confidence 333444455556677788888888888774 345788899988888763
No 470
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=21.38 E-value=6.6e+02 Score=23.24 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=39.6
Q ss_pred CcEEEEeCCchhhHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEecCH
Q 020871 196 KKVAVCSAATKSSVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVVEDSV 265 (320)
Q Consensus 196 ~~i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~VGD~~ 265 (320)
.+|+|+|..+......++..+ .-. +..+...+...-+ .+.-.+.-+..+++.++-..-++|.|+-+.
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~-~~r-~p~~~~~~~~~~v-QG~~A~~~i~~al~~~~~~~~Dviii~RGG 202 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVL-RRR-FPLVEVIIYPTLV-QGEGAAASIVAAIERANARGEDVLIVARGG 202 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHH-Hhc-CCCCeEEEecCcC-cCccHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 579999999887777777665 211 2113433333223 244445566666777664334888887654
No 471
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=21.32 E-value=53 Score=26.39 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=12.8
Q ss_pred ccEEEEecCCccccch
Q 020871 67 LQALIFDCDGVIIESE 82 (320)
Q Consensus 67 ~k~viFD~DGTL~d~~ 82 (320)
=..|-||+|||++...
T Consensus 58 E~~v~~D~~GT~m~iP 73 (271)
T PF06901_consen 58 EHTVTFDFQGTKMVIP 73 (271)
T ss_pred eeeEEEeccceEEEee
Confidence 3579999999998643
No 472
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=21.29 E-value=6.2e+02 Score=23.92 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCCCCCCHHHHHHHHH---HcCCCCCCEEEEecCH----hhHHHHHHcCCeEEEEeCC
Q 020871 234 VKQKKPDPSIYVTAAK---RLGISEKDCLVVEDSV----IGLQAATRAGMACVITYTS 284 (320)
Q Consensus 234 ~~~~KP~~~~~~~~~~---~l~~~~~~~v~VGD~~----~Dv~~a~~aG~~~v~v~~~ 284 (320)
.+.+.|+-.....+++ .+++ =+|.|+. .|+.-|..+|..+|++.+-
T Consensus 309 ~~~~~p~~~av~~~~~~~~~~~~-----~via~ggi~~~~~~~~al~~ga~~v~~g~~ 361 (479)
T PRK07807 309 TGVGRPQFSAVLECAAAARELGA-----HVWADGGVRHPRDVALALAAGASNVMIGSW 361 (479)
T ss_pred cCCchhHHHHHHHHHHHHHhcCC-----cEEecCCCCCHHHHHHHHHcCCCeeeccHh
Confidence 4567788888888777 4444 2345544 4999999999999988543
No 473
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=21.28 E-value=1.8e+02 Score=19.11 Aligned_cols=30 Identities=17% Similarity=0.407 Sum_probs=21.2
Q ss_pred cEEEEecCCccccchHHHHHHHHHHHHhcc
Q 020871 68 QALIFDCDGVIIESEHLHRQAYNDAFSHFN 97 (320)
Q Consensus 68 k~viFD~DGTL~d~~~~~~~~~~~~~~~~g 97 (320)
+.|++|++|+-.=+..-..+++..++.+++
T Consensus 18 ~~V~lDF~gv~~~~ssFl~eafg~l~~~~~ 47 (74)
T PF14213_consen 18 EKVVLDFEGVESITSSFLNEAFGQLVREFG 47 (74)
T ss_pred CeEEEECCCcccccHHHHHHHHHHHHHHcC
Confidence 349999999965555555567777776666
No 474
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=21.20 E-value=1.1e+02 Score=26.45 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=26.6
Q ss_pred hCCCCCChhH-HHHHHHHHHCCCcEEEEeCCch
Q 020871 175 SGTVEPRPGV-LRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 175 ~~~~~~~~g~-~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
.+...+.++. .++++.+++.|+.+.+.||+..
T Consensus 133 GGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 133 GGEPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred CcchhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 3455678886 6999999999999999999964
No 475
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=21.18 E-value=1.1e+02 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHHCCCcEEEEeCCch
Q 020871 179 EPRPGVLRLMDEAKAAGKKVAVCSAATK 206 (320)
Q Consensus 179 ~~~~g~~~~l~~L~~~g~~i~i~Tn~~~ 206 (320)
..||+..++++.|++.|+++.+..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4789999999999999999998776653
No 476
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.16 E-value=6e+02 Score=22.70 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=62.6
Q ss_pred HHHHHHHHHCCCcEEEEeCCc--hhhHHHHHHHhhCCccccCcceEEeCCCCC------CCCCCHHHHHHHHHHcCCCCC
Q 020871 185 LRLMDEAKAAGKKVAVCSAAT--KSSVILCLENLIGMERFEGLDCFLAGDDVK------QKKPDPSIYVTAAKRLGISEK 256 (320)
Q Consensus 185 ~~~l~~L~~~g~~i~i~Tn~~--~~~~~~~l~~~~~l~~~~~fd~v~~~~~~~------~~KP~~~~~~~~~~~l~~~~~ 256 (320)
.++|+.+-+.|.++.+-++.. .+.+....+.+. -..- -+.+++-+-+. ....+-..+..+-+.++++
T Consensus 190 ~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~-~~GN--~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lP-- 264 (335)
T PRK08673 190 FDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYIL-AEGN--PNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLP-- 264 (335)
T ss_pred HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHH-HcCC--CeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCC--
Confidence 678888888898888776644 333444444431 0111 13344422121 1112222333333334432
Q ss_pred CEEEEecCHhhH--------HHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhh
Q 020871 257 DCLVVEDSVIGL--------QAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVV 317 (320)
Q Consensus 257 ~~v~VGD~~~Dv--------~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~ 317 (320)
+++.-|+.++. .+|..+|..++++..-......+ .+.-.-+++++|.++++++.
T Consensus 265 -Vi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al------sD~~~sl~p~e~~~lv~~i~ 326 (335)
T PRK08673 265 -VIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL------SDGPQSLTPEEFEELMKKLR 326 (335)
T ss_pred -EEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC------CcchhcCCHHHHHHHHHHHH
Confidence 22222333444 67888999988775544333222 23334578899999988764
No 477
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.76 E-value=5.5e+02 Score=22.10 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCCCEEEEecCHhhHHHHHHcCCeEEEEeCCCCchhhccccceecccccccChhHHHHHHHHhhh
Q 020871 254 SEKDCLVVEDSVIGLQAATRAGMACVITYTSSTAEQDFKDAIAIYPDLSNVRLKDLELLLQNVVA 318 (320)
Q Consensus 254 ~~~~~v~VGD~~~Dv~~a~~aG~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 318 (320)
.++=++.+|-...=+.+++....+.+++|.|.-- =+.+.+++++.+.|+++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G~lG------------FL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMGGLG------------FLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECCCCc------------cCcccCHHHHHHHHHHHHc
Confidence 3456788888888888999888888889887431 1234567788888887764
No 478
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=20.68 E-value=5.9e+02 Score=22.46 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCchh-hHHHHHHHhhCCccccCcceEEeCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Q 020871 183 GVLRLMDEAKAAGKKVAVCSAATKS-SVILCLENLIGMERFEGLDCFLAGDDVKQKKPDPSIYVTAAKRLGISEKDCLVV 261 (320)
Q Consensus 183 g~~~~l~~L~~~g~~i~i~Tn~~~~-~~~~~l~~~~~l~~~~~fd~v~~~~~~~~~KP~~~~~~~~~~~l~~~~~~~v~V 261 (320)
...++++.|.+.|++++++.+.... ..+.+.+.+ +-.. ...++. . .+|.+-.-...++++.. ++|
T Consensus 201 ~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~-~~~~---~~~~~~---l-~g~~sL~el~ali~~a~------l~I 266 (348)
T PRK10916 201 HYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAAL-NTEQ---QAWCRN---L-AGETQLEQAVILIAACK------AIV 266 (348)
T ss_pred HHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhc-cccc---ccceee---c-cCCCCHHHHHHHHHhCC------EEE
Confidence 4577888887778887665433222 122222221 1110 001110 1 13433334444444432 567
Q ss_pred ecCHhhHHHHHHcCCeEEEEeCCCC
Q 020871 262 EDSVIGLQAATRAGMACVITYTSST 286 (320)
Q Consensus 262 GD~~~Dv~~a~~aG~~~v~v~~~~~ 286 (320)
|....-+-+|...|.++|.+-++..
T Consensus 267 ~nDTGp~HlAaA~g~P~valfGpt~ 291 (348)
T PRK10916 267 TNDSGLMHVAAALNRPLVALYGPSS 291 (348)
T ss_pred ecCChHHHHHHHhCCCEEEEECCCC
Confidence 7766678999999999987766543
No 479
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.65 E-value=1.1e+02 Score=20.04 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCCCCCEEEEec
Q 020871 243 IYVTAAKRLGISEKDCLVVED 263 (320)
Q Consensus 243 ~~~~~~~~l~~~~~~~v~VGD 263 (320)
+...++++.|+.+.+.|.|||
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~ 64 (69)
T TIGR03595 44 GVEDALRKAGAKDGDTVRIGD 64 (69)
T ss_pred CHHHHHHHcCCCCCCEEEEcc
Confidence 356677778888888888887
No 480
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.54 E-value=2.5e+02 Score=29.64 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=56.6
Q ss_pred HHHHHHHHHCCCc---EEEEeCCchhhHHHHHHHhhCCccccCcceEEe-CCCCCCCCCCHHHHHHHHHHcC---C-CCC
Q 020871 185 LRLMDEAKAAGKK---VAVCSAATKSSVILCLENLIGMERFEGLDCFLA-GDDVKQKKPDPSIYVTAAKRLG---I-SEK 256 (320)
Q Consensus 185 ~~~l~~L~~~g~~---i~i~Tn~~~~~~~~~l~~~~~l~~~~~fd~v~~-~~~~~~~KP~~~~~~~~~~~l~---~-~~~ 256 (320)
.++|...|..|+- ++-+.+.+...++...+.+ ++... +..|=+ +.+....-| -+|...-..-. . +..
T Consensus 482 ~~~~~~~k~~gfsd~~ia~~~~~~~~~v~~~r~~~-~~~p~--~k~vd~~a~ef~~~t~--~~y~ty~~~~~~~~~~~~k 556 (1068)
T PRK12815 482 ADLLRKVKEKGFSDALLAELTGVTEEEVRALRKKL-GIRPS--YKMVDTCAAEFEAKTP--YYYSTYFGESEAEPSSEKK 556 (1068)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHC-CCeeE--EEEecCCcCcccCCCC--ceeeeCCCCCcCccCCCCc
Confidence 4678888888864 5556677776677676665 76544 333321 222221111 12222111111 1 346
Q ss_pred CEEEEecCHhh--------------HHHHHHcCCeEEEEeCCC
Q 020871 257 DCLVVEDSVIG--------------LQAATRAGMACVITYTSS 285 (320)
Q Consensus 257 ~~v~VGD~~~D--------------v~~a~~aG~~~v~v~~~~ 285 (320)
.++++|-+++. +.+++..|+.+++++...
T Consensus 557 kvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 557 KVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred eEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 89999998763 678899999999987654
No 481
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=20.41 E-value=3.3e+02 Score=19.38 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCH-hhHHHHHH
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSV-IGLQAATR 273 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~-~Dv~~a~~ 273 (320)
..+..+++.+ +..+.|.|||+. .|.+.-..
T Consensus 53 ~~i~~i~~~f--P~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 53 DNIERILRDF--PERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHC--CCCcEEEEeeCCCcCHHHHHH
Confidence 3445555443 335788888888 47665443
No 482
>PRK03670 competence damage-inducible protein A; Provisional
Probab=20.41 E-value=4.8e+02 Score=22.16 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=38.3
Q ss_pred EEeCCCCCCCC---CCHHHHHHHHHHcCCCCCCEEEEecCHhhHHHHHH-c---CCeEEEEeCC
Q 020871 228 FLAGDDVKQKK---PDPSIYVTAAKRLGISEKDCLVVEDSVIGLQAATR-A---GMACVITYTS 284 (320)
Q Consensus 228 v~~~~~~~~~K---P~~~~~~~~~~~l~~~~~~~v~VGD~~~Dv~~a~~-a---G~~~v~v~~~ 284 (320)
+..++++..++ -+...+...+..+|++...+..|+|...++..+.+ + +...|.+.+|
T Consensus 6 i~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGG 69 (252)
T PRK03670 6 ITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGG 69 (252)
T ss_pred EEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCC
Confidence 44566654333 22345677788899999999999999988877743 2 3566666554
No 483
>COG3655 Predicted transcriptional regulator [Transcription]
Probab=20.35 E-value=1.2e+02 Score=20.18 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEecCH
Q 020871 242 SIYVTAAKRLGISEKDCLVVEDSV 265 (320)
Q Consensus 242 ~~~~~~~~~l~~~~~~~v~VGD~~ 265 (320)
+.+..+|+.|.++|.+++-+.+..
T Consensus 46 ~tL~~iC~~LeCqpgDiley~~d~ 69 (73)
T COG3655 46 STLEKICKALECQPGDILEYVPDS 69 (73)
T ss_pred HHHHHHHHHcCCChhheeEEecCC
Confidence 578999999999999999665443
Done!