Query 020873
Match_columns 320
No_of_seqs 188 out of 1870
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3.1E-35 6.8E-40 263.6 29.7 308 8-316 10-335 (358)
2 PRK11689 aromatic amino acid e 100.0 8E-35 1.7E-39 257.0 29.0 286 9-314 2-292 (295)
3 PRK11272 putative DMT superfam 100.0 1E-33 2.2E-38 249.8 30.6 275 13-313 10-289 (292)
4 PRK11453 O-acetylserine/cystei 100.0 5.7E-33 1.2E-37 245.8 29.9 276 12-314 5-292 (299)
5 PRK15430 putative chlorampheni 100.0 1.3E-32 2.7E-37 243.1 29.0 274 7-310 4-286 (296)
6 PRK10532 threonine and homoser 100.0 4.8E-32 1E-36 239.1 29.1 277 8-314 9-286 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 5.8E-32 1.3E-36 235.1 27.5 257 23-304 1-259 (260)
8 TIGR03340 phn_DUF6 phosphonate 100.0 1.1E-28 2.4E-33 216.6 28.6 270 13-306 3-280 (281)
9 TIGR00688 rarD rarD protein. T 100.0 1.2E-28 2.6E-33 213.6 28.0 243 11-284 2-255 (256)
10 TIGR00817 tpt Tpt phosphate/ph 100.0 1.8E-28 3.9E-33 217.5 27.9 271 25-317 16-301 (302)
11 KOG4510 Permease of the drug/m 100.0 2E-31 4.2E-36 218.5 3.4 292 8-311 35-327 (346)
12 PTZ00343 triose or hexose phos 100.0 3.8E-26 8.2E-31 205.7 29.3 279 9-310 47-349 (350)
13 COG0697 RhaT Permeases of the 100.0 1.2E-25 2.6E-30 198.2 31.0 282 7-310 3-288 (292)
14 COG2962 RarD Predicted permeas 99.9 2.2E-24 4.8E-29 180.7 26.3 275 7-312 3-286 (293)
15 PF06027 DUF914: Eukaryotic pr 99.9 1.1E-23 2.4E-28 185.3 27.3 292 6-311 8-307 (334)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 7.9E-24 1.7E-28 186.0 26.3 273 12-309 2-288 (290)
17 COG5006 rhtA Threonine/homoser 99.9 3.9E-22 8.5E-27 162.9 25.7 274 12-314 13-287 (292)
18 PF08449 UAA: UAA transporter 99.9 2.8E-19 6.1E-24 158.5 27.9 277 26-315 15-303 (303)
19 KOG2765 Predicted membrane pro 99.8 3.5E-19 7.7E-24 153.5 13.5 228 72-313 158-394 (416)
20 COG2510 Predicted membrane pro 99.8 4.9E-18 1.1E-22 124.6 12.8 133 11-144 3-138 (140)
21 KOG1441 Glucose-6-phosphate/ph 99.7 1.9E-16 4.1E-21 137.9 9.2 268 28-317 34-315 (316)
22 COG2510 Predicted membrane pro 99.7 1.4E-15 3.1E-20 111.7 11.6 133 176-309 4-139 (140)
23 KOG1580 UDP-galactose transpor 99.7 5.8E-15 1.3E-19 119.8 16.2 293 4-312 6-316 (337)
24 KOG1444 Nucleotide-sugar trans 99.6 2.3E-13 4.9E-18 116.3 23.5 291 5-317 6-308 (314)
25 KOG2234 Predicted UDP-galactos 99.6 4E-12 8.8E-17 110.3 27.5 288 11-313 15-326 (345)
26 PF04142 Nuc_sug_transp: Nucle 99.6 3.6E-13 7.7E-18 114.9 19.0 224 71-300 15-244 (244)
27 PF00892 EamA: EamA-like trans 99.6 3E-14 6.5E-19 109.3 10.7 122 21-144 1-125 (126)
28 KOG2766 Predicted membrane pro 99.5 2.4E-15 5.1E-20 123.5 1.1 284 7-312 14-302 (336)
29 PF06800 Sugar_transport: Suga 99.5 1.2E-11 2.5E-16 105.3 23.3 248 39-306 11-268 (269)
30 KOG1581 UDP-galactose transpor 99.5 5.6E-12 1.2E-16 106.6 19.8 258 39-310 50-314 (327)
31 TIGR00950 2A78 Carboxylate/Ami 99.4 1E-11 2.2E-16 107.8 16.8 132 8-140 125-259 (260)
32 PF00892 EamA: EamA-like trans 99.4 1.3E-12 2.8E-17 100.2 8.5 122 185-308 1-125 (126)
33 PF13536 EmrE: Multidrug resis 99.4 6.8E-12 1.5E-16 94.5 11.0 104 45-149 2-110 (113)
34 KOG1443 Predicted integral mem 99.4 1E-10 2.2E-15 99.1 18.3 246 40-307 45-313 (349)
35 PLN00411 nodulin MtN21 family 99.3 9.8E-11 2.1E-15 105.6 17.6 140 10-150 188-333 (358)
36 COG5070 VRG4 Nucleotide-sugar 99.3 2.7E-10 5.8E-15 92.2 14.3 271 29-316 24-303 (309)
37 PRK10532 threonine and homoser 99.2 4.3E-10 9.3E-15 99.4 17.0 137 9-147 146-283 (293)
38 PRK11689 aromatic amino acid e 99.2 4.3E-10 9.3E-15 99.5 15.9 134 10-147 155-289 (295)
39 PF05653 Mg_trans_NIPA: Magnes 99.2 1.8E-09 3.8E-14 95.0 19.4 280 7-314 3-297 (300)
40 PRK13499 rhamnose-proton sympo 99.2 2.1E-08 4.6E-13 88.9 26.2 291 7-310 3-342 (345)
41 PRK11272 putative DMT superfam 99.2 8.6E-10 1.9E-14 97.4 16.0 136 9-146 148-286 (292)
42 KOG4314 Predicted carbohydrate 99.2 7.8E-11 1.7E-15 93.5 8.2 215 79-313 59-280 (290)
43 TIGR03340 phn_DUF6 phosphonate 99.2 6.4E-10 1.4E-14 97.7 14.3 131 177-310 3-136 (281)
44 KOG1442 GDP-fucose transporter 99.2 1.8E-10 3.9E-15 96.0 9.3 254 39-311 60-329 (347)
45 PRK15430 putative chlorampheni 99.1 2.5E-09 5.4E-14 94.6 13.8 136 171-309 4-145 (296)
46 PRK11453 O-acetylserine/cystei 99.0 1.5E-08 3.2E-13 89.9 16.7 137 10-147 142-289 (299)
47 PF03151 TPT: Triose-phosphate 99.0 3.6E-09 7.7E-14 84.2 11.3 134 176-309 1-153 (153)
48 COG4975 GlcU Putative glucose 99.0 1.1E-10 2.5E-15 95.8 2.6 275 11-309 2-285 (288)
49 TIGR00688 rarD rarD protein. T 99.0 7.7E-09 1.7E-13 89.6 12.9 133 175-309 2-142 (256)
50 TIGR00817 tpt Tpt phosphate/ph 99.0 8.1E-09 1.8E-13 91.7 13.3 139 8-147 142-295 (302)
51 TIGR00803 nst UDP-galactose tr 98.9 1E-08 2.2E-13 86.9 11.1 207 99-306 4-221 (222)
52 KOG3912 Predicted integral mem 98.9 1E-07 2.2E-12 80.1 16.0 223 74-308 87-333 (372)
53 PRK02971 4-amino-4-deoxy-L-ara 98.9 2.7E-08 5.7E-13 76.1 10.6 122 175-313 2-126 (129)
54 PF03151 TPT: Triose-phosphate 98.9 1.4E-07 3E-12 74.9 14.9 132 12-143 1-151 (153)
55 KOG1582 UDP-galactose transpor 98.9 7.8E-08 1.7E-12 80.4 13.6 273 21-314 53-337 (367)
56 PRK15051 4-amino-4-deoxy-L-ara 98.8 1.3E-07 2.7E-12 70.7 13.1 64 81-144 45-108 (111)
57 TIGR00776 RhaT RhaT L-rhamnose 98.8 6.8E-08 1.5E-12 85.1 13.3 129 9-144 150-287 (290)
58 KOG1583 UDP-N-acetylglucosamin 98.8 5.4E-08 1.2E-12 81.5 11.2 264 39-308 32-313 (330)
59 PTZ00343 triose or hexose phos 98.8 3.5E-07 7.6E-12 82.8 16.2 136 9-144 192-347 (350)
60 COG0697 RhaT Permeases of the 98.8 5.4E-07 1.2E-11 79.1 17.0 134 10-146 153-288 (292)
61 PRK02971 4-amino-4-deoxy-L-ara 98.7 4.3E-07 9.2E-12 69.5 13.4 121 11-147 2-124 (129)
62 COG5006 rhtA Threonine/homoser 98.6 1.1E-06 2.5E-11 72.9 13.8 134 9-143 146-280 (292)
63 PF13536 EmrE: Multidrug resis 98.6 1.9E-07 4.1E-12 70.2 8.4 78 235-313 32-110 (113)
64 PF06027 DUF914: Eukaryotic pr 98.6 3.4E-06 7.4E-11 75.0 16.4 141 7-148 164-308 (334)
65 KOG2922 Uncharacterized conser 98.5 5.6E-07 1.2E-11 77.4 9.8 275 8-313 18-310 (335)
66 COG2962 RarD Predicted permeas 98.5 1.2E-06 2.6E-11 74.5 11.7 137 173-311 5-146 (293)
67 PRK15051 4-amino-4-deoxy-L-ara 98.5 2E-06 4.2E-11 64.2 10.2 66 244-309 43-109 (111)
68 PF06800 Sugar_transport: Suga 98.4 1.1E-05 2.3E-10 69.2 13.1 122 8-134 135-256 (269)
69 PF08449 UAA: UAA transporter 98.2 7.9E-05 1.7E-09 66.2 15.7 136 12-147 155-299 (303)
70 PF04657 DUF606: Protein of un 98.2 7.6E-05 1.6E-09 57.9 13.0 129 13-142 3-138 (138)
71 PF10639 UPF0546: Uncharacteri 98.0 2.3E-05 5E-10 57.9 6.8 110 17-143 2-112 (113)
72 PRK10650 multidrug efflux syst 98.0 0.00022 4.7E-09 52.7 11.9 68 76-143 38-106 (109)
73 PRK10452 multidrug efflux syst 98.0 5.3E-05 1.2E-09 56.9 8.8 71 76-146 33-104 (120)
74 PRK10452 multidrug efflux syst 98.0 2.9E-05 6.4E-10 58.3 7.2 66 247-312 40-106 (120)
75 PRK09541 emrE multidrug efflux 98.0 7.8E-05 1.7E-09 55.3 9.0 70 76-145 33-103 (110)
76 COG2076 EmrE Membrane transpor 97.9 6.5E-05 1.4E-09 54.6 8.1 69 76-144 33-102 (106)
77 PRK11431 multidrug efflux syst 97.9 0.00014 3E-09 53.4 9.0 68 77-144 33-101 (105)
78 KOG4510 Permease of the drug/m 97.9 2.2E-06 4.8E-11 71.7 -0.6 135 173-310 36-170 (346)
79 PRK13499 rhamnose-proton sympo 97.8 0.00017 3.6E-09 64.4 10.5 133 172-309 4-153 (345)
80 PF06379 RhaT: L-rhamnose-prot 97.8 0.019 4.2E-07 50.6 22.3 289 8-309 4-340 (344)
81 PRK09541 emrE multidrug efflux 97.8 0.00011 2.4E-09 54.5 7.3 65 248-312 41-106 (110)
82 COG4975 GlcU Putative glucose 97.8 2.2E-05 4.8E-10 65.1 3.8 133 176-313 3-140 (288)
83 KOG1441 Glucose-6-phosphate/ph 97.6 0.00026 5.7E-09 62.3 8.5 142 7-148 159-310 (316)
84 PF04657 DUF606: Protein of un 97.6 0.00065 1.4E-08 52.7 9.2 128 177-306 3-138 (138)
85 KOG1581 UDP-galactose transpor 97.5 0.0014 2.9E-08 56.5 11.1 139 7-145 168-313 (327)
86 PF00893 Multi_Drug_Res: Small 97.5 0.00046 9.9E-09 49.7 6.7 60 77-136 33-93 (93)
87 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00026 5.6E-09 62.5 6.4 119 171-310 3-123 (300)
88 PRK11431 multidrug efflux syst 97.4 0.00093 2E-08 49.1 7.1 63 247-309 39-102 (105)
89 COG2076 EmrE Membrane transpor 97.3 0.00071 1.5E-08 49.2 6.2 64 247-310 40-104 (106)
90 PRK10650 multidrug efflux syst 97.3 0.0009 1.9E-08 49.4 6.6 63 246-308 44-107 (109)
91 KOG1580 UDP-galactose transpor 97.3 0.0041 8.9E-08 51.6 10.6 139 9-147 170-315 (337)
92 TIGR00803 nst UDP-galactose tr 97.2 0.004 8.6E-08 52.6 10.0 135 8-142 82-221 (222)
93 COG3238 Uncharacterized protei 97.1 0.025 5.4E-07 44.1 13.0 134 10-144 4-145 (150)
94 PF00893 Multi_Drug_Res: Small 97.1 0.0014 3.1E-08 47.2 5.3 54 247-300 39-93 (93)
95 COG3238 Uncharacterized protei 97.0 0.0082 1.8E-07 46.7 9.6 133 174-308 4-145 (150)
96 PF04142 Nuc_sug_transp: Nucle 97.0 0.0022 4.8E-08 54.9 6.5 80 233-312 13-92 (244)
97 PF07857 DUF1632: CEO family ( 96.9 0.013 2.7E-07 50.2 10.7 180 12-198 1-206 (254)
98 KOG2765 Predicted membrane pro 96.9 0.019 4.2E-07 51.0 12.0 142 8-149 244-394 (416)
99 PF10639 UPF0546: Uncharacteri 96.3 0.0087 1.9E-07 44.3 5.1 107 182-306 3-111 (113)
100 KOG2922 Uncharacterized conser 96.2 0.0026 5.6E-08 55.3 1.9 126 169-314 15-141 (335)
101 KOG1444 Nucleotide-sugar trans 96.2 0.082 1.8E-06 46.2 10.8 140 9-148 155-303 (314)
102 PF06379 RhaT: L-rhamnose-prot 95.6 0.068 1.5E-06 47.3 8.1 143 171-315 3-159 (344)
103 COG5070 VRG4 Nucleotide-sugar 94.9 0.2 4.4E-06 41.5 8.2 136 12-147 156-298 (309)
104 KOG2234 Predicted UDP-galactos 94.5 1.8 3.8E-05 38.7 13.7 66 244-309 99-164 (345)
105 KOG1582 UDP-galactose transpor 94.2 0.62 1.3E-05 39.9 9.8 139 9-147 188-334 (367)
106 KOG4831 Unnamed protein [Funct 93.8 1.3 2.8E-05 32.1 9.3 111 15-144 7-124 (125)
107 KOG4314 Predicted carbohydrate 93.3 0.041 8.8E-07 44.6 1.4 65 248-312 64-128 (290)
108 KOG1443 Predicted integral mem 92.5 3.8 8.1E-05 36.0 12.1 140 4-143 155-313 (349)
109 KOG1442 GDP-fucose transporter 92.5 0.23 5.1E-06 42.5 4.8 139 8-147 182-329 (347)
110 PRK02237 hypothetical protein; 91.1 1 2.3E-05 32.8 6.2 46 267-312 63-108 (109)
111 PF07857 DUF1632: CEO family ( 88.6 0.66 1.4E-05 39.8 4.2 129 176-311 1-136 (254)
112 PRK02237 hypothetical protein; 87.3 5.1 0.00011 29.3 7.4 47 99-145 58-105 (109)
113 KOG1583 UDP-N-acetylglucosamin 86.9 13 0.00027 32.3 10.7 137 10-146 163-315 (330)
114 PF02694 UPF0060: Uncharacteri 86.7 1.9 4.1E-05 31.4 4.9 46 267-312 61-106 (107)
115 PF02694 UPF0060: Uncharacteri 82.5 3.9 8.5E-05 29.8 5.0 53 94-146 51-104 (107)
116 KOG2766 Predicted membrane pro 81.9 3.1 6.7E-05 35.5 4.9 136 7-145 162-299 (336)
117 KOG4831 Unnamed protein [Funct 81.7 3.5 7.6E-05 29.9 4.5 61 247-307 62-123 (125)
118 COG1742 Uncharacterized conser 80.1 5.1 0.00011 29.0 4.8 46 267-312 62-107 (109)
119 KOG3912 Predicted integral mem 78.9 2.3 4.9E-05 36.8 3.3 67 243-309 92-158 (372)
120 PF07168 Ureide_permease: Urei 78.0 0.79 1.7E-05 39.9 0.3 125 16-142 1-143 (336)
121 COG3169 Uncharacterized protei 77.0 7.8 0.00017 27.7 4.9 33 113-145 83-115 (116)
122 PF04342 DUF486: Protein of un 73.9 13 0.00028 27.0 5.5 34 111-144 74-107 (108)
123 PF04342 DUF486: Protein of un 73.0 10 0.00022 27.6 4.8 30 278-307 77-106 (108)
124 COG1742 Uncharacterized conser 66.7 5.9 0.00013 28.7 2.5 39 108-146 67-105 (109)
125 COG3169 Uncharacterized protei 66.1 11 0.00024 26.9 3.7 31 278-308 84-114 (116)
126 PF06570 DUF1129: Protein of u 62.7 88 0.0019 25.9 13.1 32 70-102 144-175 (206)
127 PF07168 Ureide_permease: Urei 56.4 4.4 9.6E-05 35.5 0.5 71 237-308 72-145 (336)
128 PF05297 Herpes_LMP1: Herpesvi 45.4 7 0.00015 33.8 0.0 47 97-143 47-95 (381)
129 TIGR02865 spore_II_E stage II 44.3 3.6E+02 0.0079 27.5 14.3 44 100-143 11-54 (764)
130 COG3965 Predicted Co/Zn/Cd cat 43.4 2.2E+02 0.0048 24.7 11.6 106 20-126 103-214 (314)
131 COG3247 HdeD Uncharacterized c 43.1 1.8E+02 0.004 23.7 14.7 156 120-308 14-176 (185)
132 COG3476 Tryptophan-rich sensor 41.8 1.4E+02 0.0031 23.7 6.8 64 244-308 58-123 (161)
133 COG3086 RseC Positive regulato 39.3 23 0.00051 27.4 2.0 28 258-285 69-96 (150)
134 PF09656 PGPGW: Putative trans 38.8 1E+02 0.0022 19.5 4.5 43 128-197 4-46 (53)
135 PF05297 Herpes_LMP1: Herpesvi 34.2 13 0.00029 32.1 0.0 62 248-309 119-184 (381)
136 COG3086 RseC Positive regulato 33.8 76 0.0017 24.7 4.0 42 98-140 73-114 (150)
137 PF01102 Glycophorin_A: Glycop 33.5 22 0.00048 26.8 1.0 21 295-315 75-95 (122)
138 PF04550 Phage_holin_2: Phage 29.7 2E+02 0.0044 20.2 6.2 29 119-147 24-58 (89)
139 PRK13108 prolipoprotein diacyl 28.1 1.8E+02 0.0039 27.6 6.3 24 289-312 254-277 (460)
140 PF04246 RseC_MucC: Positive r 24.8 1.2E+02 0.0026 23.0 3.9 44 98-142 66-109 (135)
141 PF11381 DUF3185: Protein of u 24.5 46 0.001 21.5 1.2 19 129-147 1-19 (59)
142 PF07123 PsbW: Photosystem II 24.2 1.3E+02 0.0028 23.1 3.7 33 171-203 102-134 (138)
143 PF11023 DUF2614: Protein of u 24.2 3E+02 0.0066 20.4 5.5 25 122-146 5-29 (114)
144 TIGR01167 LPXTG_anchor LPXTG-m 24.1 76 0.0017 17.4 2.0 12 291-302 12-23 (34)
145 PF10753 DUF2566: Protein of u 24.1 1.7E+02 0.0037 18.6 3.6 31 106-136 9-39 (55)
146 PF03729 DUF308: Short repeat 23.8 2.1E+02 0.0045 18.4 7.5 18 131-148 2-19 (72)
147 PF08693 SKG6: Transmembrane a 23.2 44 0.00095 19.7 0.9 17 296-312 22-38 (40)
148 CHL00196 psbY photosystem II p 22.5 1.6E+02 0.0035 16.9 3.0 22 173-194 4-25 (36)
149 PF04246 RseC_MucC: Positive r 22.4 48 0.001 25.3 1.2 24 262-285 66-89 (135)
150 COG2034 Predicted membrane pro 22.2 76 0.0017 22.1 2.0 27 292-318 14-40 (85)
151 PF11139 DUF2910: Protein of u 21.8 4.6E+02 0.01 21.6 13.0 59 86-144 128-210 (214)
152 PF06123 CreD: Inner membrane 21.7 6.8E+02 0.015 23.6 14.4 76 11-96 300-375 (430)
153 COG2323 Predicted membrane pro 21.5 4.2E+02 0.0091 22.4 6.7 79 41-122 4-82 (224)
154 PF11177 DUF2964: Protein of u 21.1 2.5E+02 0.0055 18.4 4.2 45 103-147 14-58 (62)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=263.57 Aligned_cols=308 Identities=14% Similarity=0.130 Sum_probs=231.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC--C-CcCCchhHHHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ--P-IFGPMHARNLLVLRALVGF 84 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 84 (320)
++.+.+..+++.-++++...++.|.+.+.+++|..+.++|+.++.+++.++.+.+++ + ++.+++.+..+.+.++.++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~ 89 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS 89 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999888764432 1 1122344556666666666
Q ss_pred HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHH------hcCcCcHHHHHHHHHHHHHHHHhhcccccccccc--CC
Q 020873 85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII------LREKLKIAEIGGLALSFFGVLFIFRRILTTQAVS--GG 156 (320)
Q Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~------l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~--~~ 156 (320)
..+.+++.+++++++++++++.++.|+++.++++++ +|||+++++++|++++++|+.++..++......+ +.
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 677789999999999999999999999999999999 6999999999999999999998775432110000 00
Q ss_pred ccCCCcccc-ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc-----c
Q 020873 157 LVKPGEAIS-LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-----V 230 (320)
Q Consensus 157 ~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 230 (320)
-.+.++... ....+.+...|+++++.++++||+|++..|+..++.++.....+++...+.....+.....++. .
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWI 249 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccce
Confidence 000000000 0011122356999999999999999999999765554554555555555554444333333221 1
Q ss_pred -cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 231 -LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 231 -~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
..+.. ...+++.++.+.++|.+|++++++.+|++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+
T Consensus 250 ~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 250 IHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred eccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 11222 3345667776778999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCcccc
Q 020873 310 IGPEKEM 316 (320)
Q Consensus 310 ~~~~~~~ 316 (320)
.++++.|
T Consensus 329 ~~~~~~~ 335 (358)
T PLN00411 329 GKANEEK 335 (358)
T ss_pred hhhhhhh
Confidence 6655543
No 2
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=8e-35 Score=257.01 Aligned_cols=286 Identities=13% Similarity=0.071 Sum_probs=219.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 88 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (320)
+.++++++++++++||.+++..|... +++||..+.++|+..+.+++.++..++ + .+++.++....+++.....+.
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~-~~~~P~~~~~~R~~~a~l~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~~~~ 76 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVS-ESLGPVGGAAMIYSVSGLLLLLTVGFP---R-LRQFPKRYLLAGGLLFVSYEI 76 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHHHHcccc---c-cccccHHHHHHHhHHHHHHHH
Confidence 45788899999999999999999987 899999999999999998887653211 1 122334555666666667777
Q ss_pred HHHHHHhc----CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873 89 SFVYSIQR----LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI 164 (320)
Q Consensus 89 ~~~~a~~~----~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 164 (320)
+++.++++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++..... .+
T Consensus 77 ~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~----------~~ 146 (295)
T PRK11689 77 CLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSL----------AE 146 (295)
T ss_pred HHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchh----------hh
Confidence 77777754 67788889999999999999999999999999999999999999999866421100 00
Q ss_pred cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC-cccCchhHHHHHHHH
Q 020873 165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-FVLPSFYSFLLMLVL 243 (320)
Q Consensus 165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ 243 (320)
. ......+..|+.+++.++++||.|.+..||..++ .++.... ....+. ...+.....+. ....+.+.|..+.+.
T Consensus 147 ~-~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~ 221 (295)
T PRK11689 147 L-INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLF--FILTAL-ALWIKYFLSPQPAMVFSLPAIIKLLLA 221 (295)
T ss_pred h-hhccccChHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHH--HHHHHH-HHHHHHHHhcCccccCCHHHHHHHHHH
Confidence 0 0001123569999999999999999999997644 3444332 222222 22222222222 223466778888888
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 244 SILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 244 gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
++.+.++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++...+++++
T Consensus 222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~ 292 (295)
T PRK11689 222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRK 292 (295)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHh
Confidence 87679999999999999999999999999999999999999999999999999999999998887665544
No 3
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1e-33 Score=249.76 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHH-HHHHHHHH
Q 020873 13 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSFV 91 (320)
Q Consensus 13 ~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 91 (320)
+...++..++||.++++.|... ++.||.+++++|+.++.+++.++...++++. .+++.++.....|... ...+.+++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGV-ESWPPLMMAGVRFLIAGILLLAFLLLRGHPL-PTLRQWLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999987 7999999999999999999888776655443 2344455555555544 56788889
Q ss_pred HHH-hcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccC
Q 020873 92 YSI-QRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRG 170 (320)
Q Consensus 92 ~a~-~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (320)
.+. +++++++++++.++.|+++.+++++ +|||+++++++|++++++|+.++..++. .
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~---------------------~ 145 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN---------------------L 145 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc---------------------c
Confidence 998 9999999999999999999999985 7999999999999999999998864321 0
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC-c-ccCchhHHHHHHHHHHHH-
Q 020873 171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE-F-VLPSFYSFLLMLVLSILA- 247 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~gi~~- 247 (320)
+.+..|+.++++++++||.+.+..||..+ .++ .....+....+.....+.....+. . ..++...|..+.+.++++
T Consensus 146 ~~~~~G~l~~l~a~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s 223 (292)
T PRK11272 146 SGNPWGAILILIASASWAFGSVWSSRLPL-PVG-MMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGS 223 (292)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCC-Ccc-hHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHH
Confidence 22457999999999999999999999653 333 334445555555554444333332 2 224667888899999886
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 313 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~ 313 (320)
.+++.+|++++|+.++++++.+.++||+++++++++++||+++..+++|+.+++.|+++..+++++
T Consensus 224 ~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 224 IIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999999999999999999998876664
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=5.7e-33 Score=245.79 Aligned_cols=276 Identities=16% Similarity=0.175 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHH-HHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVG-FLSLFSF 90 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 90 (320)
..++.++++++||.+++++|... ++.||.++.++|+.++++.+.++..++++ .++.....++.. ...+.++
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~~~l~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~ 76 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGL-HNMPPLMLAGLRFMLVAFPAIFFVARPKV-------PLNLLLGYGLTISFGQFAFL 76 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHHHHHHHH
Confidence 34668899999999999999987 78999999999999987766554422211 123333344433 3555677
Q ss_pred HHHHhc-CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccccc
Q 020873 91 VYSIQR-LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 169 (320)
Q Consensus 91 ~~a~~~-~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (320)
+.+.++ .++++++++.++.|+++.+++++++|||+++++++|++++++|+.++..++.. .
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~-------------------~ 137 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLN-------------------G 137 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCC-------------------C
Confidence 889998 58899999999999999999999999999999999999999999998755311 0
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchh--HHHHHHHHHHHHHHHHHhhhcCC-------cccCchhHHHHH
Q 020873 170 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL--VTVFSFGILASPAAGICLFFFEE-------FVLPSFYSFLLM 240 (320)
Q Consensus 170 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l 240 (320)
.+.+..|+.+++.++++|+.|.+..|+..++.+++. ....+....+.+.........++ +...+...|..+
T Consensus 138 ~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 217 (299)
T PRK11453 138 QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSL 217 (299)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHH
Confidence 123457999999999999999999999654333222 22333343433322222222221 123466789999
Q ss_pred HHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 241 LVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 241 ~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
++.++++ .++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+++..+.++.|
T Consensus 218 ~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~~~ 292 (299)
T PRK11453 218 MYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLRWR 292 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999886 8999999999999999999999999999999999999999999999999999999998877655433
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=1.3e-32 Score=243.13 Aligned_cols=274 Identities=14% Similarity=0.088 Sum_probs=208.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cCCchhHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-----FGPMHARNLLVLRAL 81 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 81 (320)
+++.+|..++++++++||.++++.|.. +++||.++.++|+.++.+++.++...+++.+ .++++.+.....+++
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~--~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI--YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 456799999999999999999999974 5799999999999999887777655443211 112233334456677
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 161 (320)
..+.++.++++|++++++++++++.++.|+++.+++++++|||++++++.|++++++|+.++..++.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~------------- 148 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG------------- 148 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 7788999999999999999999999999999999999999999999999999999999999875421
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHhhhcCCccc--Cch-hHH
Q 020873 162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEFVL--PSF-YSF 237 (320)
Q Consensus 162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~ 237 (320)
+.. .+++.++++||.|.+..|+..++.. +......+....+...... ....+... .++ ..+
T Consensus 149 ---------~~~----~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 213 (296)
T PRK15430 149 ---------SLP----IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA--IADSSTSHMGQNPMSLN 213 (296)
T ss_pred ---------Ccc----HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH--HccCCcccccCCcHHHH
Confidence 111 4578899999999999999643211 1112222233233222111 11111111 112 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
..+...|+.+.+++.+|++++++.++++++++.+++|+++.+++++++||+++..+++|+++++.++.+...+
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667899999999999999999999999999999999999999999999999999998887776543
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=4.8e-32 Score=239.09 Aligned_cols=277 Identities=13% Similarity=0.049 Sum_probs=219.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 87 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (320)
++.+|+.++++++++|+.++.+.|+.. ++.||.++.++|++++.+++.++..+++++ .+++.++..+..++.....+
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~-~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~ 85 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLF-PLVGAPGVTALRLALGTLILIAIFKPWRLR--FAKEQRLPLLFYGVSLGGMN 85 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHHHhHHhcc--CCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999988 789999999999999998888765443322 23455566667777778888
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN 167 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 167 (320)
.+++++++++|++.++++.++.|+++.+++ +||+++ ..++.++++|+.++..++.+.
T Consensus 86 ~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~----------------- 142 (293)
T PRK10532 86 YLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDV----------------- 142 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCc-----------------
Confidence 899999999999999999999999998776 366554 455678899999887543211
Q ss_pred ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH
Q 020873 168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA 247 (320)
Q Consensus 168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 247 (320)
++.+..|+++++.++++||.|.+..||..++ .++.... +....+.+...+.....++....+...|..+++.|+++
T Consensus 143 --~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 143 --SHVDLTGAALALGAGACWAIYILSGQRAGAE-HGPATVA-IGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILS 218 (293)
T ss_pred --ccCChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHH-HHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHH
Confidence 1224579999999999999999999997654 3444443 34444444444433333322223556676777889886
Q ss_pred -HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 248 -FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 248 -~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
.++|.+|++++++.++++++.+.++||+++.+++++++||+++..+++|+.+++.|++...++++++
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999988776554
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=5.8e-32 Score=235.07 Aligned_cols=257 Identities=21% Similarity=0.233 Sum_probs=211.3
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 020873 23 YFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 102 (320)
Q Consensus 23 ~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a 102 (320)
||.+++..|...+++.|+.+..+.|+..+.+++.++..++ +++++..+....+++...+++.+++.|+++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~ 76 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEA 76 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 8899999999876678999999999999888887765544 223344556666667778999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHH
Q 020873 103 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182 (320)
Q Consensus 103 ~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 182 (320)
+++.++.|+++.+++++++|||+++++++|+.++++|+.++..++. .+.+..|+.+++.
T Consensus 77 ~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~---------------------~~~~~~G~~~~l~ 135 (260)
T TIGR00950 77 ALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN---------------------LSINPAGLLLGLG 135 (260)
T ss_pred HHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc---------------------ccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875431 1235689999999
Q ss_pred HHHHhHHHHHHhhhccCCCCc-hhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHHHHHHHHhccc
Q 020873 183 SSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQL 260 (320)
Q Consensus 183 a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~ 260 (320)
++++|+.+.+..|+..++.++ +.....+....+.+...+.....++....+..+|..+.+.++++ .+++.+|++++|+
T Consensus 136 a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 215 (260)
T TIGR00950 136 SGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL 215 (260)
T ss_pred HHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999997643222 22333344556665555444444433344667788888888876 8999999999999
Q ss_pred cccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhh
Q 020873 261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV 304 (320)
Q Consensus 261 ~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~ 304 (320)
.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+
T Consensus 216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999886
No 8
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.97 E-value=1.1e-28 Score=216.62 Aligned_cols=270 Identities=14% Similarity=0.080 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh--CCC-CcCCchhHHHHHHHHHHHHHHHHH
Q 020873 13 LMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQP-IFGPMHARNLLVLRALVGFLSLFS 89 (320)
Q Consensus 13 ~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 89 (320)
..+.++++++|+..+...|... ++.++. .+++.....+.+.++...+ ++. +..+++.+.....+++....++.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~-~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHA-DKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999765 333443 4777777777777766543 222 223345566777888888899999
Q ss_pred HHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccccc
Q 020873 90 FVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVR 169 (320)
Q Consensus 90 ~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (320)
+++|+++.++++++++.++.|+++.+++++++|||+++++++|+.+++.|+.++..++..
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------------------- 139 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-------------------- 139 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--------------------
Confidence 999999999999999999999999999999999999999999999999999988755311
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHH---HHHHHH-HHHHHHHhhhcCCcccCchhHHHHHHHHH-
Q 020873 170 GSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF---SFGILA-SPAAGICLFFFEEFVLPSFYSFLLMLVLS- 244 (320)
Q Consensus 170 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g- 244 (320)
..+..|+.+++.++++|+.|.+..|+..++.++...... ...... ...........+....++...+....+.+
T Consensus 140 -~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (281)
T TIGR03340 140 -QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGG 218 (281)
T ss_pred -ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 123357788999999999999999885432221111111 111111 11111111111111112223333444444
Q ss_pred HHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873 245 ILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 306 (320)
Q Consensus 245 i~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~ 306 (320)
+.+..+|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+.+++.|+.+
T Consensus 219 ~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 219 LMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 55699999999999999999999999999999999999999999999999999999999875
No 9
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.97 E-value=1.2e-28 Score=213.63 Aligned_cols=243 Identities=15% Similarity=0.112 Sum_probs=186.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC------C--cCCchhHHHHHHHHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP------I--FGPMHARNLLVLRALV 82 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~------~--~~~~~~~~~~~~~~~~ 82 (320)
||+.++++++++||.++++.|. . +++||.++.++|++++.+++.++...+++. . ..+++.+.....+++.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-L-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-h-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 6899999999999999999998 3 579999999999999998877665332211 1 1122234456778888
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCc
Q 020873 83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGE 162 (320)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~ 162 (320)
.+.++.++++|++++++++++++.++.|+++.+++++++|||+++++++++.++++|+.++..++.
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------------- 145 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------------- 145 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC--------------
Confidence 889999999999999999999999999999999999999999999999999999999998865421
Q ss_pred cccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc--cc-CchhHHHH
Q 020873 163 AISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VL-PSFYSFLL 239 (320)
Q Consensus 163 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~ 239 (320)
+.. .+++.++++||.|.+..|+..+ +++. ..... .....+.........+.. .. +...+|.+
T Consensus 146 --------~~~----~~~l~aa~~~a~~~i~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (256)
T TIGR00688 146 --------SLP----WEALVLAFSFTAYGLIRKALKN-TDLA-GFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLL 210 (256)
T ss_pred --------Cch----HHHHHHHHHHHHHHHHHhhcCC-CCcc-hHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHH
Confidence 111 3578899999999999999653 2222 22111 112222222111111111 11 22347888
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHH
Q 020873 240 MLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGL 284 (320)
Q Consensus 240 l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~ 284 (320)
++..|+++.++|.++++++|+.++++++++.+++|+++.+++++.
T Consensus 211 l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 211 LVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 888898889999999999999999999999999999999999764
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.8e-28 Score=217.54 Aligned_cols=271 Identities=13% Similarity=0.039 Sum_probs=208.9
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh-hCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 020873 25 FMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR-SGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT 103 (320)
Q Consensus 25 ~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~ 103 (320)
...++.|++.++-.+|..+++.|+.++.+.+.+.... .++++..++++++.+...|++.+.+..+.+.++++++++.++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3446789888333679999999999988776555221 122233456677888888888888999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHH
Q 020873 104 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS 183 (320)
Q Consensus 104 ~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 183 (320)
++.++.|+++.+++++++|||++++++.|++++++|+.+....+ .+.+..|+++++++
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------------------~~~~~~G~~~~l~a 153 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------------------LSFNWAGFLSAMIS 153 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------------------ccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764221 12346799999999
Q ss_pred HHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCccc-C-ch----------hHHHHHHHHHHHH-HH
Q 020873 184 SITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVL-P-SF----------YSFLLMLVLSILA-FF 249 (320)
Q Consensus 184 ~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----------~~~~~l~~~gi~~-~~ 249 (320)
+++|+++.+..||..++ +.++.....++...+.+...+.....++... + +. ..+...+..+... ..
T Consensus 154 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (302)
T TIGR00817 154 NITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF 233 (302)
T ss_pred HHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 99999999999997541 3566777888887777776665554433211 1 00 0111122222222 33
Q ss_pred HHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccccc
Q 020873 250 AEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 317 (320)
Q Consensus 250 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 317 (320)
.+.++++++++.++++.+...+++|+++++++++++||+++..+++|+++++.|+.+..+.|++|++.
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 34567789999999999999999999999999999999999999999999999999998877666543
No 11
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.97 E-value=2e-31 Score=218.46 Aligned_cols=292 Identities=22% Similarity=0.359 Sum_probs=244.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 87 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (320)
...+|..+..++ ..+....++.+... +.+|.+..-.|++...+.-.+....++.....++..+++++++|+.++.+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgv 111 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGV 111 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHH
Confidence 346788888888 55555555555543 789999999998888888777776666655566666778899999999999
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN 167 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 167 (320)
...|||++|.+.++|+++.+++|.++.+++|.++|||.++.+.++..+.+.||+++.+|.+-.+++. ++++++
T Consensus 112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t-------~g~~~s 184 (346)
T KOG4510|consen 112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTT-------EGEDSS 184 (346)
T ss_pred HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCc-------cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987543311 111111
Q ss_pred ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC-chhHHHHHHHHHHH
Q 020873 168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP-SFYSFLLMLVLSIL 246 (320)
Q Consensus 168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~ 246 (320)
+ -+.+.+|...++.+++..|--+++.|++.+ +.|......|+.+.+.+...+.....+.+..| ...+|.....+|+.
T Consensus 185 ~-~~~~~~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvf 262 (346)
T KOG4510|consen 185 Q-VEYDIPGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVF 262 (346)
T ss_pred c-ccccCCchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhh
Confidence 1 244567888999999998888999999765 56677777888888888887766666677777 67889999999999
Q ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 247 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
+++++.+...++++..+.++++..+.+.+++.+++.++++|.||++.++|+++++.+.++...+|
T Consensus 263 gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 263 GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988876544
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=3.8e-26 Score=205.74 Aligned_cols=279 Identities=11% Similarity=0.088 Sum_probs=212.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHh--hCCCCcC-CchhHHHHHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRR--SGQPIFG-PMHARNLLVLRALVGF 84 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 84 (320)
+.+-..+.+....+=.......|.+. ++.| |..++.+|++++.++....... +++++.. +++.++.++..++++.
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl-~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLAL-NMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 44555555555555566677889887 7789 9999999999998766544332 2112121 3446677888888888
Q ss_pred HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873 85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI 164 (320)
Q Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 164 (320)
..+...+.|+++++++.+.++..+.|+++++++++++|||++++++.++++++.|+.+....+.
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------------- 189 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------------- 189 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc----------------
Confidence 7777778999999999999999999999999999999999999999999999999999874331
Q ss_pred cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCC------CchhHHHHHHHHHHHHHHHHHhhhcCCcc--------
Q 020873 165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANAS------DQPLVTVFSFGILASPAAGICLFFFEEFV-------- 230 (320)
Q Consensus 165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 230 (320)
+.+..|+++++++++++|++++..|+..++. .++.....+....+.++..+.....+...
T Consensus 190 ------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~ 263 (350)
T PTZ00343 190 ------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNY 263 (350)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 2357899999999999999999999976532 22333344445666666655544333211
Q ss_pred --cCchhHHHHHHHHHHHHHHHHHHHH----HhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhh
Q 020873 231 --LPSFYSFLLMLVLSILAFFAEVLLA----RGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSV 304 (320)
Q Consensus 231 --~~~~~~~~~l~~~gi~~~~~~~~~~----~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~ 304 (320)
..+...+..+....+.+.+.+.+++ +++++.++...+...+++|+++++++++++||+++..+++|+.+++.|+
T Consensus 264 ~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv 343 (350)
T PTZ00343 264 TANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGA 343 (350)
T ss_pred hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHH
Confidence 0011112233334444578888887 4999999999999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 020873 305 FYTMYI 310 (320)
Q Consensus 305 ~~~~~~ 310 (320)
+++++.
T Consensus 344 ~lYs~~ 349 (350)
T PTZ00343 344 LLYSLF 349 (350)
T ss_pred HHHhhc
Confidence 988764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.96 E-value=1.2e-25 Score=198.21 Aligned_cols=282 Identities=19% Similarity=0.173 Sum_probs=221.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CCcCCchhHHHHHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFL 85 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (320)
++...+..+.++..+.|+......|...+...++....+.|...+.+...+...+++. .....++.++..+.+++....
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLAL 82 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHH
Confidence 3456788889999999999999999987333777888888999988884444443321 222222234667777788889
Q ss_pred HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHH-HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccc
Q 020873 86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR-IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAI 164 (320)
Q Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~-~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 164 (320)
.+.+++.++++++++.+.++.++.|+++.++++ +++|||++++++.++.+++.|+.++..++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~------------ 150 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI------------ 150 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh------------
Confidence 999999999999999999999999999999997 6679999999999999999999999988643210
Q ss_pred cccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHH-HHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHH
Q 020873 165 SLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVF-SFGILASPAAGICLFFFEEFVLPSFYSFLLMLVL 243 (320)
Q Consensus 165 ~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 243 (320)
. +..|+.+++.+++++|.+.+..|+.. ..++..... +... ............+.....+...|..+.+.
T Consensus 151 ------~-~~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (292)
T COG0697 151 ------L-SLLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLL-LALLLLLLFFLSGFGAPILSRAWLLLLYL 220 (292)
T ss_pred ------H-HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHH-HHHHHHHHHHhccccccCCHHHHHHHHHH
Confidence 1 57999999999999999999999865 333434333 2222 11111111111111123456788889999
Q ss_pred HHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 244 SILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 244 gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
|+++ ..++.++++++++.++.+++.+.+++|+++.++++++++|+++..+++|+.+++.|+.+...+
T Consensus 221 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 221 GVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9887 589999999999999999999999999999999999999999999999999999999888776
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.94 E-value=2.2e-24 Score=180.73 Aligned_cols=275 Identities=19% Similarity=0.181 Sum_probs=226.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCC-----CcCCchhHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQP-----IFGPMHARNLLVLRAL 81 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 81 (320)
++..+|+++.+.+.++||..+.+.|.. ++.|+.++...|...+.+++.......|+. ..++++.+..+.+.++
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll--~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL--EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH--ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 456799999999999999999999985 699999999999999998877665432221 1234455567778888
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 161 (320)
....++..|.+|.++...-++|.-++..|++.++++++++|||+++.|++++.++.+||.......+
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g------------- 147 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG------------- 147 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence 8889999999999999999999999999999999999999999999999999999999998876542
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcc---c-CchhHH
Q 020873 162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV---L-PSFYSF 237 (320)
Q Consensus 162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ 237 (320)
+.++. ++.-+++|++|....|+. +.+..+.....++.-.+...+.....++.. . .+...+
T Consensus 148 ---------~lpwv----al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~ 211 (293)
T COG2962 148 ---------SLPWV----ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLW 211 (293)
T ss_pred ---------CCcHH----HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHH
Confidence 23433 355567999999988885 334555555566665555555444333222 1 245678
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
.++...|+.+.++..++..+-|+.+-+..+.++|.+|..-.+++++++||+++..++...+.|-.|..+...+.-
T Consensus 212 ~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 212 LLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999999999999999999999877643
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.93 E-value=1.1e-23 Score=185.26 Aligned_cols=292 Identities=13% Similarity=0.066 Sum_probs=226.2
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhC-CCC--cCCchhHHHHHHHHH
Q 020873 6 NGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSG-QPI--FGPMHARNLLVLRAL 81 (320)
Q Consensus 6 ~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 81 (320)
.++..+++++.-..+++-..++..+....+++.+ |....+..+..-.++..+....|+ ++. ...++.++..++.++
T Consensus 8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~ 87 (334)
T PF06027_consen 8 TRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLAL 87 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHH
Confidence 3445677788888888888888888887755555 666667777666666555544332 211 112233444555589
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 161 (320)
+.+.++.+...|++|++.+.+.++.++.-+++++++++++|||.++.+++|+++++.|+.++...|....+
T Consensus 88 ~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~--------- 158 (334)
T PF06027_consen 88 LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS--------- 158 (334)
T ss_pred HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999888754311
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCC--ccc--CchhHH
Q 020873 162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEE--FVL--PSFYSF 237 (320)
Q Consensus 162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~ 237 (320)
.+..+.+...|+++++.++++||++++..++..++ .+........++.+.++..+.....+. ... .+.+.+
T Consensus 159 ----~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~ 233 (334)
T PF06027_consen 159 ----DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVI 233 (334)
T ss_pred ----cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhH
Confidence 11234567899999999999999999999998764 445566667777777777665554432 211 134445
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 238 LLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 238 ~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
.+++..+++.+.-|.+.-..++..+|+..++-..+..+++++++++++|+++++..++|.++|+.|.++....+
T Consensus 234 ~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 234 GLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 55555556567888888999999999999999999999999999999999999999999999999999887644
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.93 E-value=7.9e-24 Score=185.98 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 91 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (320)
+++++++++++||...+..|... +.++.+.. |..++.+++..+....++++.+.++.+..-+++|+....++.+++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~ 77 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQF 77 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHH
Confidence 57889999999999999999853 77787775 777777766655443333323335555667777888889999999
Q ss_pred HHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHHHHHhhccccccccccCCccCCCccccc
Q 020873 92 YSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 166 (320)
Q Consensus 92 ~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
.|.++++.+.+.++.+ +.|++..+.+.+++|||.++++ .+|++++++|+.++...+.++ .++
T Consensus 78 ~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~-------------~~~ 144 (290)
T TIGR00776 78 KSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKS-------------AGI 144 (290)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccc-------------ccc
Confidence 9999999999999988 8888999999999999999999 999999999999886553211 000
Q ss_pred cccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHH----HHHHHHHHHhhhcCCcccCchhHHHHHHH
Q 020873 167 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGI----LASPAAGICLFFFEEFVLPSFYSFLLMLV 242 (320)
Q Consensus 167 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (320)
+.. .+...|+.+++.++++|+.|.+..|+.. .++....+.+.. .+.++.... ... .+...+.+.....
T Consensus 145 ~~~-~~~~~Gi~~~l~sg~~y~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~ 216 (290)
T TIGR00776 145 KSE-FNFKKGILLLLMSTIGYLVYVVVAKAFG---VDGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPLKKYAILLNIL 216 (290)
T ss_pred ccc-cchhhHHHHHHHHHHHHHHHHHHHHHcC---CCcceehhHHHHHHHHHHHHHHHHH---hcc-cchHHHHHHHHHH
Confidence 000 1235799999999999999999999852 344444333322 222222211 111 1123333333444
Q ss_pred HHHHHHHHHHHHHHhcc-ccccccccchhhhHHHHHHHHHHHHhccCCchhhh----hhhHHhhhhhhhhhh
Q 020873 243 LSILAFFAEVLLARGLQ-LEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMY 309 (320)
Q Consensus 243 ~gi~~~~~~~~~~~a~~-~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~----~G~~lii~g~~~~~~ 309 (320)
.|++..+++.+|+.+.+ +.++++++.+.+.||+.+.++++++++|+.+..|+ +|+++++.|+.+...
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 88888999999999999 99999999999999999999999999999999999 999999999987754
No 17
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.92 E-value=3.9e-22 Score=162.94 Aligned_cols=274 Identities=13% Similarity=0.060 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 91 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (320)
.+...+.+.+.--....+.|... +.+++...+.+|..++.++++.+.+-.++ +..++.+.....-|......|.+||
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LF-P~vG~~g~t~lRl~~aaLIll~l~RPwr~--r~~~~~~~~~~~yGvsLg~MNl~FY 89 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLF-PLVGAAGVTALRLAIAALILLALFRPWRR--RLSKPQRLALLAYGVSLGGMNLLFY 89 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHc-cccChhhHHHHHHHHHHHHHHHHhhHHHh--ccChhhhHHHHHHHHHHHHHHHHHH
Confidence 47778888888888888999988 99999999999999999998887653332 2345667888888999999999999
Q ss_pred HHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCc
Q 020873 92 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGS 171 (320)
Q Consensus 92 ~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (320)
.+++++|.+.+..+.++.|+...+++. + +.+..+.+.+++.|+.++.-.+.+ ...
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~-------------------~~~ 144 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQS-------------------VWS 144 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCC-------------------cCc
Confidence 999999999999999999997766543 2 345666778889999888644422 125
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHH
Q 020873 172 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFA 250 (320)
Q Consensus 172 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~ 250 (320)
.|..|..+++.++.||+.|.+..||..+ .++....+...+.++.++..++..........++.....-+..|+++ .+.
T Consensus 145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccc
Confidence 6789999999999999999999999764 45555555666666666655554444444455677777778889997 999
Q ss_pred HHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 251 EVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 251 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
|.+-..++++.+....+.+..+||.++.+.+++++||.+|..||.|...++.+..-.....+|+
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999988766654443
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.87 E-value=2.8e-19 Score=158.49 Aligned_cols=277 Identities=15% Similarity=0.153 Sum_probs=220.4
Q ss_pred HHHHHHHhh-cCCCC--HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 020873 26 MQVISDVFM-VQSIP--LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 102 (320)
Q Consensus 26 ~~~~~k~~~-~~~~~--~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a 102 (320)
+....+... .++.. |..+++.++....+...+.....+++ ..++..++.....++...++..+-+.|++++|...-
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~ 93 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQ 93 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Confidence 334555443 23344 88999999998888777665555422 233444566777789999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHH
Q 020873 103 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLF 182 (320)
Q Consensus 103 ~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 182 (320)
.+..+..|+.+++++.+++|+|.+++++.++++..+|+.+....+.... ++.+........|+.+.+.
T Consensus 94 ~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~------------~~~~~~~~~~~~G~~ll~~ 161 (303)
T PF08449_consen 94 IVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS------------SSSNSSSFSSALGIILLLL 161 (303)
T ss_pred HHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc------------cccccccccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999887664321 1111111222349999999
Q ss_pred HHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhh--cCCcc------cCchhHHHHHHHHHHHHHHHHHH
Q 020873 183 SSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFF--FEEFV------LPSFYSFLLMLVLSILAFFAEVL 253 (320)
Q Consensus 183 a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~l~~~gi~~~~~~~~ 253 (320)
+.++.++..+..+|..+ .+.++...+++....+.+...+.... .++.. ..+++.+..++...+++..++..
T Consensus 162 sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~ 241 (303)
T PF08449_consen 162 SLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFF 241 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988664 35566788888888888887766555 32222 22455677778888888999999
Q ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccc
Q 020873 254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKE 315 (320)
Q Consensus 254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~ 315 (320)
.+...++.++...+.+..+.-+++++++.++++++++..+++|..+++.|..+..+.++||+
T Consensus 242 i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 242 IFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999988877664
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.81 E-value=3.5e-19 Score=153.50 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccc
Q 020873 72 ARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQ 151 (320)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 151 (320)
..+..+..+..-++++..+..|+.+++++...++.+++-+|+..++.++.+||++..+.+++.+.+.|++++...+..+
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~- 236 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ- 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc-
Confidence 3445666677778999999999999999999999999999999999999999999999999999999999998776432
Q ss_pred cccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHh--------
Q 020873 152 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL-------- 223 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (320)
+.+........|.++++++++.||.|.++.||...+.+....+...++.+|..-+.+..
T Consensus 237 -------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~ 303 (416)
T KOG2765|consen 237 -------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDF 303 (416)
T ss_pred -------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11223456789999999999999999999998665443455555555555544333222
Q ss_pred hhcCCcccCchhHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhh
Q 020873 224 FFFEEFVLPSFYSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILV 302 (320)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~ 302 (320)
...+.+..|+..+...++..++++ +++-++|.+|+-..++..+++-..++...+++.+.++-+.++++.+++|.+.|+.
T Consensus 304 ~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv 383 (416)
T KOG2765|consen 304 FGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFV 383 (416)
T ss_pred hccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 123567778888888888888776 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCc
Q 020873 303 SVFYTMYIGPE 313 (320)
Q Consensus 303 g~~~~~~~~~~ 313 (320)
|.++.+...+.
T Consensus 384 ~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 384 GFVIVNISSEN 394 (416)
T ss_pred HHhheeccccc
Confidence 99998876443
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.78 E-value=4.9e-18 Score=124.56 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC---CchhHHHHHHHHHHHHHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG---PMHARNLLVLRALVGFLSL 87 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 87 (320)
...+++++++++++..+++.|... ++.||...++.|......++..+....++.+.. .++.+..+.++|+.+..++
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl-~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGL-EGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-cccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 457889999999999999999988 999999999999999999999888887765544 6677888999999999999
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
.+||+|+|..+++.+.++..++|.++.+++++++|||+|..+++|+.+..+|++++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999998874
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=137.91 Aligned_cols=268 Identities=13% Similarity=0.071 Sum_probs=211.3
Q ss_pred HHHHHhhc--CCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Q 020873 28 VISDVFMV--QSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQAT 103 (320)
Q Consensus 28 ~~~k~~~~--~~~~~~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~ 103 (320)
...|+..+ +.--|..++..+...+.+........+- .++..++..++..+..++...++..+-..|+++.+++.+.
T Consensus 34 ~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q 113 (316)
T KOG1441|consen 34 ILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQ 113 (316)
T ss_pred EeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHH
Confidence 34577664 2234778888877666666555433332 2222345667788888999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHH
Q 020873 104 VLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFS 183 (320)
Q Consensus 104 ~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 183 (320)
.+..++|++++++++++.+|+.++..+..++....||.+....+. +.++.|...++.+
T Consensus 114 ~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~----------------------~fn~~G~i~a~~s 171 (316)
T KOG1441|consen 114 TIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL----------------------SFNLFGFISAMIS 171 (316)
T ss_pred HHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc----------------------cccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999876542 4688999999999
Q ss_pred HHHhHHHHHHhhhccC---CCCchhHHHHHHHHHHHHHHH-HHhhhcCCccc------CchhHHHHHHHHHHHHHHHHHH
Q 020873 184 SITGGISYCLIKAGAN---ASDQPLVTVFSFGILASPAAG-ICLFFFEEFVL------PSFYSFLLMLVLSILAFFAEVL 253 (320)
Q Consensus 184 ~~~~a~~~v~~k~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~~~~~ 253 (320)
.+..+..+++.|++.+ .+.++.....+..-.+...+. +.....++... +.........+..++...-+..
T Consensus 172 ~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls 251 (316)
T KOG1441|consen 172 NLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLS 251 (316)
T ss_pred HHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999763 345677777777777777666 43333333221 2112233334445777888899
Q ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCccccc
Q 020873 254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEMN 317 (320)
Q Consensus 254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 317 (320)
-+..+.+.+|...+..+.+.-++.+..++++++|+.|+.+..|+.+.+.|+.++.+.+.+++++
T Consensus 252 ~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 252 AFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999988776654
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.66 E-value=1.4e-15 Score=111.72 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC---chhHHHHHHHHHHHHHHHHH
Q 020873 176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEV 252 (320)
Q Consensus 176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~ 252 (320)
...+++++++.+++..++.|--.+ +.+|...+.....+...+........+++..+ +++.|.++...|+.+..+.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 568899999999999999998665 45566666667777777766666777777766 88999999999999999999
Q ss_pred HHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 253 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 253 ~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+|++|+|..+++++.++..+.|+++++++++++||+++..+++|+.+|++|.++...
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999887643
No 23
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.66 E-value=5.8e-15 Score=119.79 Aligned_cols=293 Identities=14% Similarity=0.153 Sum_probs=215.0
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCC--C---------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchh
Q 020873 4 VWNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSI--P---------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHA 72 (320)
Q Consensus 4 ~~~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~--~---------~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~ 72 (320)
+|-+++.+-.+++.--.+|+-..++.......... + ...+++.++..-.++.=.....|++...++. .
T Consensus 6 s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t-~ 84 (337)
T KOG1580|consen 6 SWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNT-P 84 (337)
T ss_pred cccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCC-c
Confidence 45555555555544444555555555554431111 1 2345555555555544333333433322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccccc
Q 020873 73 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQA 152 (320)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~ 152 (320)
-+.....++..-+++..-..|+|+.|-....+-.+.-|+-+++++.++.|++.++++...++++++||.+..+.+....+
T Consensus 85 ~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g 164 (337)
T KOG1580|consen 85 TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGG 164 (337)
T ss_pred chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCC
Confidence 34556677778889999999999999999999999999999999999999999999999999999999999888543221
Q ss_pred ccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCC-cc
Q 020873 153 VSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEE-FV 230 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 230 (320)
..++....|.++.+++-..-++....+.+... .......++++..+.+.+.+....++.++ |+
T Consensus 165 ---------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElwe 229 (337)
T KOG1580|consen 165 ---------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWE 229 (337)
T ss_pred ---------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHH
Confidence 12345568999999988887777776655332 33455677788888888777665554432 22
Q ss_pred -----cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhh
Q 020873 231 -----LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVF 305 (320)
Q Consensus 231 -----~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~ 305 (320)
...+..|.-+..+++++.+++++.+.-....+|-.-+.+....-.|+++.++++++.+++..||+|.+++..+..
T Consensus 230 F~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~ 309 (337)
T KOG1580|consen 230 FFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALT 309 (337)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Confidence 345778888999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhcCC
Q 020873 306 YTMYIGP 312 (320)
Q Consensus 306 ~~~~~~~ 312 (320)
.-....+
T Consensus 310 ~D~~~GK 316 (337)
T KOG1580|consen 310 ADVVDGK 316 (337)
T ss_pred hHhhcCC
Confidence 7765544
No 24
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.3e-13 Score=116.33 Aligned_cols=291 Identities=13% Similarity=0.079 Sum_probs=225.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHH--HHHHHHHHHHHHHHHHhhC-CCCcCCchhHHHHHHHHH
Q 020873 5 WNGSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETV--FMRCTVTLILSYLWLRRSG-QPIFGPMHARNLLVLRAL 81 (320)
Q Consensus 5 ~~~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~--~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 81 (320)
+++.+.+.+..++..+++-...-+..|.+....--|..+. ..+.+.+.+.+...-+.+- +.+..+++..|.++...+
T Consensus 6 ~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~ 85 (314)
T KOG1444|consen 6 GSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSL 85 (314)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHH
Confidence 4455556677777777777777888888872222233333 4777766665554332221 222233445566667777
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCC
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPG 161 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 161 (320)
........-..+++++++....++.+.+|+++++....++|.|++...+.++....+|......++..
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s------------ 153 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS------------ 153 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce------------
Confidence 77777777889999999999999999999999999999999999999999999999999988777643
Q ss_pred ccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCcc--------cC
Q 020873 162 EAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFV--------LP 232 (320)
Q Consensus 162 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 232 (320)
.+..|+.+++...++-+.+.+..||..+ .+.+....+++..+.+.+...+..+.++++. ++
T Consensus 154 ----------f~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~ 223 (314)
T KOG1444|consen 154 ----------FNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS 223 (314)
T ss_pred ----------ecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence 3445999999999999999999998554 3345567788889998888888777776543 22
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 233 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 233 ~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
+...+..+...+++++.-.++-+++.+..+++..+.++..+-..+.+...++.+++.++...+|..+-+.|.+++.+.+.
T Consensus 224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~ 303 (314)
T KOG1444|consen 224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF 303 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence 34557778888999988888888999999999999999888888888888888999999999999999999999988775
Q ss_pred ccccc
Q 020873 313 EKEMN 317 (320)
Q Consensus 313 ~~~~~ 317 (320)
+||+.
T Consensus 304 ~~k~~ 308 (314)
T KOG1444|consen 304 RKKKQ 308 (314)
T ss_pred hhccC
Confidence 55443
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4e-12 Score=110.30 Aligned_cols=288 Identities=13% Similarity=0.114 Sum_probs=206.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHHHHHHHHhhC----CCC-cC-------CchhHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQS---IPLFETVFMRCTVTLILSYLWLRRSG----QPI-FG-------PMHARNL 75 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~---~~~~~~~~~r~~~~~~~l~~~~~~~~----~~~-~~-------~~~~~~~ 75 (320)
.-++.++...+.++...+..|+....+ ..|....+.--..-.+++.....++. ++. +. .++....
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 456667778888999999999876444 66788888877777777666655442 111 11 1111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccC
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSG 155 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 155 (320)
..+=++..++.+.++|.++.+.+++...+..++--+.|++++.+++++|++++||.++.+.++|+.++-.+.....
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~---- 170 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT---- 170 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC----
Confidence 3344567788888999999999999999999999999999999999999999999999999999999874432211
Q ss_pred CccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCccc---
Q 020873 156 GLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFVL--- 231 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (320)
+.......+..+.|....+.++.+.++..++..|..++ +.+.+.-.......|.++.++.....+....
T Consensus 171 -------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~ 243 (345)
T KOG2234|consen 171 -------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEY 243 (345)
T ss_pred -------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccC
Confidence 11112234567899999999999999999988886654 3444444555555666665554443322111
Q ss_pred -----CchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873 232 -----PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 306 (320)
Q Consensus 232 -----~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~ 306 (320)
.+...|..++.. ..+=++...-+|+.+-..=.....+..+++.+.++.+++-+||....+|..+++.++.+
T Consensus 244 gff~G~s~~vw~vVl~~----a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l 319 (345)
T KOG2234|consen 244 GFFYGYSSIVWLVVLLN----AVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL 319 (345)
T ss_pred CccccccHHHHHHHHHH----hccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence 122233333333 44444555567888887778888889999999999999999999999999999999999
Q ss_pred hhhcCCc
Q 020873 307 TMYIGPE 313 (320)
Q Consensus 307 ~~~~~~~ 313 (320)
+...+.+
T Consensus 320 Y~~~P~~ 326 (345)
T KOG2234|consen 320 YSLYPAR 326 (345)
T ss_pred hhcCCcc
Confidence 8855443
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.57 E-value=3.6e-13 Score=114.90 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccc
Q 020873 71 HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT 150 (320)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~ 150 (320)
+....+.+=++...+.+.+.+.++++++++.-.++.++-.++|++++++++|+|++++||.++.+.+.|+.+...++...
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 33445556678899999999999999999999999999999999999999999999999999999999999987665432
Q ss_pred ccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCC-chhHHHHHHHHHHHHHHHHHhhhcCCc
Q 020873 151 QAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASD-QPLVTVFSFGILASPAAGICLFFFEEF 229 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (320)
.+.+ +++..+.+....+...|..+.+.++++.++..++.+|..|+++ +...........+.++..+..... ++
T Consensus 95 ~~~~-----~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~ 168 (244)
T PF04142_consen 95 SDNS-----SSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DG 168 (244)
T ss_pred cccc-----cccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cc
Confidence 1100 0000001112345689999999999999999999988766543 334444555555666555443332 22
Q ss_pred ccC----chhHHHHHHHHHHH-HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHh
Q 020873 230 VLP----SFYSFLLMLVLSIL-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300 (320)
Q Consensus 230 ~~~----~~~~~~~l~~~gi~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~li 300 (320)
..+ -.+.|-...+.-++ ...+=++....+|+.+...=+.....+.+.+.+.++++++.+++....+|+.++
T Consensus 169 ~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 169 SAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 111 11222222222222 245555566678999998889999999999999999999999999999998753
No 27
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.56 E-value=3e-14 Score=109.33 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCchhHHHHH-HHHHHHHHHHHHHHHHHhcC
Q 020873 21 TIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLV-LRALVGFLSLFSFVYSIQRL 97 (320)
Q Consensus 21 ~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~ 97 (320)
++||...+..|... ++.||.+..++|+..+.+ +.+.....+ +....+++.+.... .+.+....++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLL-KKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHh-ccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 47899999999987 779999999999999997 444433222 21223333344444 44444689999999999999
Q ss_pred CccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 98 ~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
+++.++.+.++.|+++.+++++++|||+++++++|+.+++.|++++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.52 E-value=2.4e-15 Score=123.47 Aligned_cols=284 Identities=11% Similarity=0.073 Sum_probs=213.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFL 85 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (320)
++..+|+.+.-+-.+|-......+.....++.+ |....|..+..-+++-.++...|++. -+..|+..++.++..+-
T Consensus 14 kk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~---~~~~~~hYilla~~DVE 90 (336)
T KOG2766|consen 14 KKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY---IKAKWRHYILLAFVDVE 90 (336)
T ss_pred hhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH---HHHHHHHhhheeEEeec
Confidence 344566666555555555555555555445554 77888899888888888887766532 12234446677888888
Q ss_pred HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccc
Q 020873 86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 165 (320)
Q Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
++.+...|.||++...+..+.+-.-..+.+++|+++|.|-++.++.|+++++.|+++++.+|...++
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd------------- 157 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGD------------- 157 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecccc-------------
Confidence 8888999999999999999999888888999999999999999999999999999999887753321
Q ss_pred ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC--chhHHHHHHH-
Q 020873 166 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP--SFYSFLLMLV- 242 (320)
Q Consensus 166 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~- 242 (320)
...+.+...|+++.+.++.+||..++....+.+ +.+....+...++.|.++..+- ++.+..+.. +++ |....+
T Consensus 158 -~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk-n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~-~~i~~yl 233 (336)
T KOG2766|consen 158 -RAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK-NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWD-SAIFLYL 233 (336)
T ss_pred -ccCCCCCccCcEEEEecceeeeeccccHHHHHh-cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeeh-HHHHHHH
Confidence 122355678999999999999999999999875 4556677777788888888877 444433322 221 222222
Q ss_pred -HHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 243 -LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 243 -~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
.+++-+.-|-+.-..+|..+++...+-..+.-.+++++ ..||-+.++...+....+..|.++...+++
T Consensus 234 ~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 234 RFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred HHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 33444666777777888899999999888999999988 678888999999999999999888765543
No 29
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.51 E-value=1.2e-11 Score=105.28 Aligned_cols=248 Identities=13% Similarity=0.070 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhh-hhHHHHHHHH
Q 020873 39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAA 117 (320)
Q Consensus 39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~ll~ 117 (320)
+|.+-..--..-+.++-......++.....+.+.+..-+++|++-.+++...+.|+++.+++.+.++.. .+-+.+.+.+
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 455555444444444444443433322211235677788999999999999999999999999999965 6667789999
Q ss_pred HHHhcCcCcHHHH----HHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHH
Q 020873 118 RIILREKLKIAEI----GGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 193 (320)
Q Consensus 118 ~~~l~e~~~~~~~----~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~ 193 (320)
.++++|.-+..++ +++++.++|+.+....+.++.. .....+...|+...+++.+.|..|.+.
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~--------------~~~~~~~~kgi~~Ll~stigy~~Y~~~ 156 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK--------------SSSKSNMKKGILALLISTIGYWIYSVI 156 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc--------------cccccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999997776654 4888999999998877643211 111344567999999999999999999
Q ss_pred hhhccCCCCchhHHHHHHHHHHHHHHH-HHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhh
Q 020873 194 IKAGANASDQPLVTVFSFGILASPAAG-ICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYI 272 (320)
Q Consensus 194 ~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~ 272 (320)
.|.. +.++....+-+. .+..+.. +..... +....+...|.. ...|++-.+++.+++.+.++.+.+..-.+..+
T Consensus 157 ~~~~---~~~~~~~~lPqa-iGm~i~a~i~~~~~-~~~~~~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~ 230 (269)
T PF06800_consen 157 PKAF---HVSGWSAFLPQA-IGMLIGAFIFNLFS-KKPFFEKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQL 230 (269)
T ss_pred HHhc---CCChhHhHHHHH-HHHHHHHHHHhhcc-cccccccchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhH
Confidence 8873 345555555443 3333332 222222 211223333333 45677778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCchhh----hhhhHHhhhhhhh
Q 020873 273 EVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFY 306 (320)
Q Consensus 273 ~pv~~~~~~~l~~~e~~~~~~----~~G~~lii~g~~~ 306 (320)
.++++.+.+.++++|+=+..+ .+|.++++.|.++
T Consensus 231 ~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 231 GVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999877654 5788888877654
No 30
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=5.6e-12 Score=106.62 Aligned_cols=258 Identities=11% Similarity=0.075 Sum_probs=206.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHH
Q 020873 39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAAR 118 (320)
Q Consensus 39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~ 118 (320)
++..+.+.+-+.+.++-...+..+++. ...++.++.....++....+..|-|.|++|++-..-.+-.+.--+-+++...
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~-~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~ 128 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKE-LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGT 128 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccccc-CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHH
Confidence 567788888888887776666555544 3444556666777888899999999999999999888888877788889999
Q ss_pred HHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhcc
Q 020873 119 IILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGA 198 (320)
Q Consensus 119 ~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 198 (320)
++.|+|.+..+.+...+.-.|+.+....+.+ ++..+..+++...|+.+....-..-++.+..++++-
T Consensus 129 Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s-------------~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf 195 (327)
T KOG1581|consen 129 LVYGRKYSSFEYLVAFLISLGVSIFSLFPNS-------------DSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLF 195 (327)
T ss_pred HHhcCccCcHHHHHHHHHHhheeeEEEecCC-------------CCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHh
Confidence 9999999999999999999999876654321 112223345678999999999998888888887765
Q ss_pred CC-CCchhHHHHHHHHHHHHHHHHHhhhcCCcc------cCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhh
Q 020873 199 NA-SDQPLVTVFSFGILASPAAGICLFFFEEFV------LPSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY 271 (320)
Q Consensus 199 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~ 271 (320)
++ ..++..++++..+.+.+.........+.+. ..+++.+.-++....++.+++.+.++-+++.|+-.-+.++.
T Consensus 196 ~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 196 KKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred ccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 53 456778888888888877665433223222 23677888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 272 IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 272 ~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
+.-.++++++.+.++.+++..|+.|..+++.|+.+-...
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 999999999999999999999999999999988776543
No 31
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.42 E-value=1e-11 Score=107.80 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=108.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHH-HHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPL--FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARN-LLVLRALVGF 84 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~--~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (320)
...+|..++++++++|+......|... ++.++ .....+|+.++.+++.+.....++....+++.+. ....+.+...
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLV-KKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTA 203 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHh-hcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHH
Confidence 446899999999999999999999987 56664 4555578889888888876655443333333443 3444555567
Q ss_pred HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 020873 85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV 140 (320)
Q Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv 140 (320)
.++.++++++++.+++.++.+.++.|+++.+++++++|||++..++.|..+.+.|+
T Consensus 204 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 204 LAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999999999999999999986
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.40 E-value=1.3e-12 Score=100.15 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=102.8
Q ss_pred HHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc--ccCchhHHHHHHHHHHHH-HHHHHHHHHhcccc
Q 020873 185 ITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF--VLPSFYSFLLMLVLSILA-FFAEVLLARGLQLE 261 (320)
Q Consensus 185 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~~-~~~~~~~~~a~~~~ 261 (320)
++||.+.+..|+..++ .++....++....+.+ ..+........ ...+.+++......++++ ..++.++++++++.
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4789999999997764 6677888888878776 44444443332 455778888888888885 99999999999999
Q ss_pred ccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873 262 KTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 262 ~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~ 308 (320)
++++++.+.+++|+++.++++++++|+++..+++|+.+++.|+++..
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988764
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.37 E-value=6.8e-12 Score=94.54 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCc----CCchhHHHHHHHHHHH-HHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHH
Q 020873 45 FMRCTVTLILSYLWLRRSGQPIF----GPMHARNLLVLRALVG-FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARI 119 (320)
Q Consensus 45 ~~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~ 119 (320)
.+|+..+.+++..+...+++... .+++.+......++.. ..++.++++|.++.| +.++++.+++|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57999999888887666543211 1123334455555555 489999999999999 58889999999999999999
Q ss_pred HhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 020873 120 ILREKLKIAEIGGLALSFFGVLFIFRRILT 149 (320)
Q Consensus 120 ~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~ 149 (320)
++|||++++++.++.++++|++++..++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999988743
No 34
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.36 E-value=1e-10 Score=99.07 Aligned_cols=246 Identities=15% Similarity=0.111 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC------CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHH
Q 020873 40 LFETVFMRCTVTLILSYLWLRRSG------QPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMA 113 (320)
Q Consensus 40 ~~~~~~~r~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~ 113 (320)
|...+.++.+.-.++.....+.++ +....+++..++....++..+..-.+-.+++++++.+.-+...++.++|+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FI 124 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFI 124 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHH
Confidence 677777776665555444333221 12233455667777889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHH
Q 020873 114 SIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCL 193 (320)
Q Consensus 114 ~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~ 193 (320)
.+++.+|-=||+++.-..-+.++.+|+.+.++.+. +.+..|..+...+.++.++-...
T Consensus 125 llFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT----------------------qf~i~Gf~lv~~aS~~sGlRW~~ 182 (349)
T KOG1443|consen 125 LLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST----------------------QFNIEGFFLVLAASLLSGLRWAF 182 (349)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc----------------------ceeehhHHHHHHHHHhhhhhHHH
Confidence 99999887799999999999999999999987752 45678888888888887777776
Q ss_pred hhhccCCC----CchhHHHHHHHHHHHHHHHHHhhhcCCcccC---------ch-hHHHHH---HHHHHHHHHHHHHHHH
Q 020873 194 IKAGANAS----DQPLVTVFSFGILASPAAGICLFFFEEFVLP---------SF-YSFLLM---LVLSILAFFAEVLLAR 256 (320)
Q Consensus 194 ~k~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~l---~~~gi~~~~~~~~~~~ 256 (320)
.+++.+++ .+|..+.....-...+.+.+..+..|+.+.. +. ..+..+ ...|..++.--.+-+.
T Consensus 183 tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEfl 262 (349)
T KOG1443|consen 183 TQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFL 262 (349)
T ss_pred HHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655433 4677777766666555555555555543321 11 123333 3334444444455666
Q ss_pred hccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhh
Q 020873 257 GLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 307 (320)
Q Consensus 257 a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~ 307 (320)
.+.+++....++.....-+...+++..+.+|+++...+.|..+...|+.+.
T Consensus 263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 778889999999999999999999999999999999999999999998887
No 35
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.33 E-value=9.8e-11 Score=105.60 Aligned_cols=140 Identities=11% Similarity=0.073 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHHHHHh-hCCCCcC----CchhHHHHHHHHHHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPL-FETVFMRCTVTLILSYLWLRR-SGQPIFG----PMHARNLLVLRALVG 83 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~-~~~~~~r~~~~~~~l~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~ 83 (320)
..|..+++.++++|+...+..|... +..++ ....++...++.+.+.+.... .+.+... ........+..++..
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIM-SEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 3488999999999999999999876 45544 456666666665555443332 2211111 111112233344555
Q ss_pred HHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccccc
Q 020873 84 FLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTT 150 (320)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~ 150 (320)
.+++.++++++++.+++.++...++.|++++++++++++|+++..+++|.++.+.|+.+..+++..+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6788889999999999999999999999999999999999999999999999999999988765443
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.25 E-value=2.7e-10 Score=92.20 Aligned_cols=271 Identities=11% Similarity=0.072 Sum_probs=197.7
Q ss_pred HHHHhh-cCCCC-HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Q 020873 29 ISDVFM-VQSIP-LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLS 106 (320)
Q Consensus 29 ~~k~~~-~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~ 106 (320)
-.|+.. .++.+ .+.+.+.+.+...+-+...-+.+-.. .+.++. +.++.-++..+.....--.++||++...-++..
T Consensus 24 tNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~-fR~t~a-K~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK 101 (309)
T COG5070 24 TNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVE-FRLTKA-KKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK 101 (309)
T ss_pred hhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhh-eehhhh-hhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence 335544 23443 45566677666555444432222111 111222 222333444444444445789999999999999
Q ss_pred hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHH
Q 020873 107 FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSIT 186 (320)
Q Consensus 107 ~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~ 186 (320)
+++-+.++.....++|.|.+-.+.....+.+..-+.-.+.|.+... .....-..|.++...-+++
T Consensus 102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~---------------~~~~~lN~GY~Wm~~Ncls 166 (309)
T COG5070 102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASA---------------FKAQILNPGYLWMFTNCLS 166 (309)
T ss_pred cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHH---------------HHhcccCCceEEEehhhHh
Confidence 9999999999999999999999999999998888887777642210 0012234688999999999
Q ss_pred hHHHHHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC------chhHHHHHHHHHHHHHHHHHHHHHhcc
Q 020873 187 GGISYCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEFVLP------SFYSFLLMLVLSILAFFAEVLLARGLQ 259 (320)
Q Consensus 187 ~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~~~~~a~~ 259 (320)
.+.+-...|+..+ .+-.....++|..+.+.+++..+.+..++|.+. ..+...+++..|+++..--++--+.++
T Consensus 167 saafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvr 246 (309)
T COG5070 167 SAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVR 246 (309)
T ss_pred HHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEe
Confidence 9999888887554 233346788999999999999998988888754 345677888899999777778889999
Q ss_pred ccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcccc
Q 020873 260 LEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEKEM 316 (320)
Q Consensus 260 ~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~~~ 316 (320)
..+.+..+.+..++-.-..+-|.++++|+.+...+....+=.+++.++...+.+|++
T Consensus 247 VtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 247 VTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred ehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988888888777766555443
No 37
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.25 E-value=4.3e-10 Score=99.38 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=107.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHH-HHHHHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNL-LVLRALVGFLSL 87 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (320)
...|..+.+.++++|+......|... ++.++....... .++.+++.++..........+...+.. ..++.+...+++
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAG-AEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999876 667777765444 455555555555443221122222322 345555567889
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.++++++++.+++.++++.+++|+++.+++++++||+++..+++|..+.+.|++......
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999886554
No 38
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.23 E-value=4.3e-10 Score=99.49 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-cCCchhHHHHHHHHHHHHHHHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-FGPMHARNLLVLRALVGFLSLF 88 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 88 (320)
..|..+++.++++|+...+..|+.. ++.++..... ....+.+.+.....+... ..+.+.+...+..++...+++.
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999975 5667765432 222333333222232221 1223444455556667778999
Q ss_pred HHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 89 SFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 89 ~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
++++++++.+++.++.+.++.|+++.+++++++||+++..+++|.++.+.|+.+....+
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999998876543
No 39
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.23 E-value=1.8e-09 Score=94.98 Aligned_cols=280 Identities=18% Similarity=0.159 Sum_probs=160.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLS 86 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (320)
.+...|..+++.++++-+....+.|+.. ...+. .-. ++++. ..+.-..+.++.+.+...++
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~-~r~~~---~~~--------------~~~~~-~~~~l~~~~W~~G~~~~~~g 63 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSH-LRLPR---GSL--------------RAGSG-GRSYLRRPLWWIGLLLMVLG 63 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhc---ccc--------------cccch-hhHHHhhHHHHHHHHHHhcc
Confidence 4567899999999999999999999764 11100 000 00000 00001113344445556688
Q ss_pred HHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccc
Q 020873 87 LFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 166 (320)
Q Consensus 87 ~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
..+.+.|+...|.+..+++....-++..+++..++|||++++++.|..+++.|..++........+ ..+. ++-.
T Consensus 64 ~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~----~~t~--~~l~ 137 (300)
T PF05653_consen 64 EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP----IHTL--DELI 137 (300)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC----cCCH--HHHH
Confidence 889999999999999999999999999999999999999999999999999999877543321100 0000 0000
Q ss_pred cccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHH-------HHHHHHhh-hcCCcccCchhHHH
Q 020873 167 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILAS-------PAAGICLF-FFEEFVLPSFYSFL 238 (320)
Q Consensus 167 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~ 238 (320)
+...+........... .+...+.....+|..+++ .........+.+. .+...... ..++....++..|.
T Consensus 138 ~~~~~~~fl~y~~~~~-~~~~~L~~~~~~r~g~~~--i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~ 214 (300)
T PF05653_consen 138 ALLSQPGFLVYFILVL-VLILILIFFIKPRYGRRN--ILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYL 214 (300)
T ss_pred HHhcCcceehhHHHHH-HHHHHHHHhhcchhcccc--eEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHH
Confidence 0000011111111111 112222222222212111 1100000001111 01111111 11222223455666
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhhhH-HHHHHHHHHHHhccC--Cchh----hhhhhHHhhhhhhhhhhcC
Q 020873 239 LMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIE-VALTQLWGMGLSRIA--PSFG----RLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 239 ~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~-pv~~~~~~~l~~~e~--~~~~----~~~G~~lii~g~~~~~~~~ 311 (320)
.++....+...-..+.++|+++.+++.+.++.+.. -.++++-+.++++|. .+.. ...|+..++.|+.++..+|
T Consensus 215 l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~ 294 (300)
T PF05653_consen 215 LLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSK 294 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccC
Confidence 65555555577788999999999999999888844 556667777788874 3342 3678888999998887665
Q ss_pred Ccc
Q 020873 312 PEK 314 (320)
Q Consensus 312 ~~~ 314 (320)
+.+
T Consensus 295 ~~~ 297 (300)
T PF05653_consen 295 DKE 297 (300)
T ss_pred chh
Confidence 543
No 40
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.22 E-value=2.1e-08 Score=88.86 Aligned_cols=291 Identities=11% Similarity=0.013 Sum_probs=180.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH-HHHHHHHHHH---HHHHhhCC---CCcCCchhHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFM-RCTVTLILSY---LWLRRSGQ---PIFGPMHARNLLVLR 79 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~-r~~~~~~~l~---~~~~~~~~---~~~~~~~~~~~~~~~ 79 (320)
++...|+++.++++++||+...-.|.. ++.+-... +. -..++.++.. .....+.- -...+.+.+..-+++
T Consensus 3 ~~~~~G~~~~~i~~~~~GS~~~p~K~~--k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 3 NAIILGIIWHLIGGASSGSFYAPFKKV--KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred chhHHHHHHHHHHHHHhhccccccccc--CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 345789999999999999999999983 44442222 11 1112222222 11111110 011234566778889
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHhhccccccc
Q 020873 80 ALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKL-------KIAEIGGLALSFFGVLFIFRRILTTQ 151 (320)
Q Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~-------~~~~~~g~~l~~~Gv~li~~~~~~~~ 151 (320)
|++-.+++..++.++++.+.+.+.++ ..+.-+...++..++++|-. .....+|+++.++|+++....+...+
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999988 55888899999999988643 23468899999999999988443221
Q ss_pred cccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHH-------HHhhhccCCCCchhHHHHHHH---HHHHHHHH-
Q 020873 152 AVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISY-------CLIKAGANASDQPLVTVFSFG---ILASPAAG- 220 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~---~~~~~~~~- 220 (320)
. +..+++..+...-.|+..++++.+.++.|+ ...+.....+.++.....-+. +.+....-
T Consensus 160 ~---------~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~ 230 (345)
T PRK13499 160 R---------KMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNL 230 (345)
T ss_pred c---------ccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 1 011000123445689999999999999999 444331111222222222111 12222222
Q ss_pred HHhhh---c-CCcc---cC-c-----hhHHHHHHHHHHHHHHHHHHHHHhccccccccccc---hh-hhHHHHHHHHHHH
Q 020873 221 ICLFF---F-EEFV---LP-S-----FYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVAN---VQ-YIEVALTQLWGMG 283 (320)
Q Consensus 221 ~~~~~---~-~~~~---~~-~-----~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~---~~-~~~pv~~~~~~~l 283 (320)
+.... . +++. .. . ..+...-.+.|+.-..++..+..+-++.+...... +. .+..+++.+++.
T Consensus 231 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi- 309 (345)
T PRK13499 231 GFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL- 309 (345)
T ss_pred HHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-
Confidence 11111 1 1111 11 1 22333335556666788888888888776654433 44 778899999998
Q ss_pred HhccCCc------hhhhhhhHHhhhhhhhhhhc
Q 020873 284 LSRIAPS------FGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 284 ~~~e~~~------~~~~~G~~lii~g~~~~~~~ 310 (320)
+++|.=+ ...++|.++++.|..+....
T Consensus 310 ~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 310 VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 5999655 45589999999998877553
No 41
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.19 E-value=8.6e-10 Score=97.42 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--cCCchhHHHHH-HHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--FGPMHARNLLV-LRALVGFL 85 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~ 85 (320)
...|..+.++++++|+......|... +. ++.....+++..+.+.+.++....+... ..+.+.+..+. .+.+...+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLP-LP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcC-CC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999999864 32 3455667888888777776655443221 11223343434 44445668
Q ss_pred HHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 86 SLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
++.++++++++.++++++.+.++.|+++.+++++++||+++..+++|..+.+.|+.+....
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999988654
No 42
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.19 E-value=7.8e-11 Score=93.51 Aligned_cols=215 Identities=11% Similarity=0.061 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCcc
Q 020873 79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLV 158 (320)
Q Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 158 (320)
..++.+..++.|..|++.+++++++.+.....-|+.+++++.+|+|+...++++.++++.|++++.+.|..
T Consensus 59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~--------- 129 (290)
T KOG4314|consen 59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE--------- 129 (290)
T ss_pred eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch---------
Confidence 35666788999999999999999999999999999999999999999999999999999999999877632
Q ss_pred CCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchh-----HHHHHHHHHHHHHHHHHhhhc--CCccc
Q 020873 159 KPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPL-----VTVFSFGILASPAAGICLFFF--EEFVL 231 (320)
Q Consensus 159 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~ 231 (320)
..+.+.|+.+++.++...|.|.+.-|+......-.. +.+.+..+.-.-+-.+...++ ++++.
T Consensus 130 -----------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qs 198 (290)
T KOG4314|consen 130 -----------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQS 198 (290)
T ss_pred -----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHH
Confidence 256889999999999999999999998653211111 111111111111111111111 23333
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 232 PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 232 ~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
.....|..+...+.++..-+.+.+.+.....|...+.-......-...++.++-+-..+...+.|..+++.|.++....+
T Consensus 199 FA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 199 FAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 33445666666666666666677777788888888877777777788888776666788889999999999988776655
Q ss_pred Cc
Q 020873 312 PE 313 (320)
Q Consensus 312 ~~ 313 (320)
.+
T Consensus 279 d~ 280 (290)
T KOG4314|consen 279 DK 280 (290)
T ss_pred ch
Confidence 44
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.18 E-value=6.4e-10 Score=97.70 Aligned_cols=131 Identities=11% Similarity=0.046 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhh---cCCcccCchhHHHHHHHHHHHHHHHHHH
Q 020873 177 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFF---FEEFVLPSFYSFLLMLVLSILAFFAEVL 253 (320)
Q Consensus 177 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~gi~~~~~~~~ 253 (320)
..+.+.+++++|..++..|+..++ +++. .++......+...+.... ..++..++.+.|..+...++.....+.+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG 79 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999986543 3332 344444444443333222 1233334445555556566666899999
Q ss_pred HHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 254 LARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
+++++++.+++.++++.+++|+++.+++++++||+++..+++|..+++.|+.+....
T Consensus 80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999887653
No 44
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.8e-10 Score=95.99 Aligned_cols=254 Identities=12% Similarity=0.082 Sum_probs=191.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCC--CC------cCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhH
Q 020873 39 PLFETVFMRCTVTLILSYLWLRRSGQ--PI------FGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAP 110 (320)
Q Consensus 39 ~~~~~~~~r~~~~~~~l~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~P 110 (320)
.|....+++++....++..+.....+ .. ..+.+.-+...-..+.......+..+++++.+++.-.+--.+..
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 48888999999888777766432111 10 11112223344445555556666788999999999999999999
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHH
Q 020873 111 IMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGIS 190 (320)
Q Consensus 111 i~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~ 190 (320)
+|+++++++++|+|-+..-..+..+.+.|..+=++.++. .+...+.|.+++..+.++-|+.
T Consensus 140 vFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~-------------------~~~ls~~GvifGVlaSl~vAln 200 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGS-------------------TGTLSWIGVIFGVLASLAVALN 200 (347)
T ss_pred hHHHHhHHhhcccccccccceeehhheehheeccccccc-------------------cCccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999888888887765443321 2356789999999999999999
Q ss_pred HHHhhhccC-CCCchhHHHHHHHHHHHHHHHHHhhhcCCc-------ccCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 020873 191 YCLIKAGAN-ASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFYSFLLMLVLSILAFFAEVLLARGLQLEK 262 (320)
Q Consensus 191 ~v~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~ 262 (320)
.+..||... ..+..+...++..+.+.++.++.....++. +.++..-|..+.+.|++++.-.+.-.+=+|..+
T Consensus 201 aiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TS 280 (347)
T KOG1442|consen 201 AIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTS 280 (347)
T ss_pred HHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecc
Confidence 999998443 345667888888888887777665544332 234667788888899999555555555677888
Q ss_pred cccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 263 TSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 263 ~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
|..-.+-..-....-.+++..+.+|.-+..-|-+-.+++.|...+.+.|
T Consensus 281 plThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 281 PLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred cceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 8877777777888889999999999999999999999999988887643
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.08 E-value=2.5e-09 Score=94.63 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=107.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCccc-----CchhHHHHHHHHHH
Q 020873 171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVL-----PSFYSFLLMLVLSI 245 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi 245 (320)
++...|.++.+.++++|+...+..|.. . +.++....+++...+.++.........+... .+...+.... .+.
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA-VSA 80 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-HHH
Confidence 456689999999999999999999875 3 4678888888888887665544333222111 1233333333 444
Q ss_pred H-HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 246 L-AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 246 ~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+ ....+.++++++++.+++.++.+.++.|++..++++++++|+++..++.|..+.+.|+.+...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4 478899999999999999999999999999999999999999999999999999999988754
No 46
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.03 E-value=1.5e-08 Score=89.85 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHHHHHHHHHh-hCCC------CcCCchhHH-HHHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMVQSIP---LFETVFMRCTVTLILSYLWLRR-SGQP------IFGPMHARN-LLVL 78 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~---~~~~~~~r~~~~~~~l~~~~~~-~~~~------~~~~~~~~~-~~~~ 78 (320)
..|..+++.++++|+...+..|... +..+ .....++....+.+.+...... .+.. ...+.+.+. ....
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 220 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIM-SHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHH
Confidence 4699999999999999999999865 3222 2233344444443333322221 2111 011223333 3444
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
+.+...+++.++++++++.++++++.+..+.|+++.+++++++||+++..+++|..+.+.|+.+...+.
T Consensus 221 ~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 221 AFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 556666899999999999999999999999999999999999999999999999999999999887664
No 47
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.03 E-value=3.6e-09 Score=84.17 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccCC------CCchhHHHHHHHHHHHHHHHHHhhhcCCcccC-------------chhH
Q 020873 176 AVLVGLFSSITGGISYCLIKAGANA------SDQPLVTVFSFGILASPAAGICLFFFEEFVLP-------------SFYS 236 (320)
Q Consensus 176 G~~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 236 (320)
|.++++.+.++.|++.++.|+..++ +.++.....+....+.+...+.....++.... +.+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999886544 56677888888888888887776665543310 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 237 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 237 ~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+..+...|+++...+...+..+++.+|...+.......+...+.+++++||++|..++.|..+.+.|.+++++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 6667777888899999999999999999999999999999999999999999999999999999999887653
No 48
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.1e-10 Score=95.79 Aligned_cols=275 Identities=11% Similarity=0.044 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 90 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (320)
..++.+++-++.||+.+.+... -+-.|.+-..-.-+.+.++...+.+.. ++..+.+.+..-+++|+.-..++...
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k---~GG~p~qQ~lGtT~GALifaiiv~~~~--~p~~T~~~~iv~~isG~~Ws~GQ~~Q 76 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANK---FGGKPYQQTLGTTLGALIFAIIVFLFV--SPELTLTIFIVGFISGAFWSFGQANQ 76 (288)
T ss_pred hhHHHHHHHHHHhcccceeeee---cCCChhHhhhhccHHHHHHHHHHheee--cCccchhhHHHHHHhhhHhhhhhhhh
Confidence 3578899999999999988764 345666666555555555544444332 23334555666778888888999999
Q ss_pred HHHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHH----HHHHHHHHHHHHHhhccccccccccCCccCCCcccc
Q 020873 91 VYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAE----IGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS 165 (320)
Q Consensus 91 ~~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 165 (320)
+.|.++.+++++.++.. ++-+-+.+.+.+.+||-.+..+ .+++++.+.|+.+-.+.+... .
T Consensus 77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n------------k-- 142 (288)
T COG4975 77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN------------K-- 142 (288)
T ss_pred hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc------------c--
Confidence 99999999999999965 7777888999999999877765 456777778887776665321 1
Q ss_pred ccccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHH
Q 020873 166 LNVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSI 245 (320)
Q Consensus 166 ~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 245 (320)
+.+..+..-.|+...+.+.+.|-.|.+..+-.. .+-.+...-+ ..+.++..+..-.... +.+..+....-...|+
T Consensus 143 ~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~---v~g~saiLPq-AiGMv~~ali~~~~~~-~~~~~K~t~~nii~G~ 217 (288)
T COG4975 143 EEENPSNLKKGIVILLISTLGYVGYVVLFQLFD---VDGLSAILPQ-AIGMVIGALILGFFKM-EKRFNKYTWLNIIPGL 217 (288)
T ss_pred cccChHhhhhheeeeeeeccceeeeEeeecccc---ccchhhhhHH-HHHHHHHHHHHhhccc-ccchHHHHHHHHhhHH
Confidence 111223345788888889999999988887753 2222332222 2333333222111111 2333333444456788
Q ss_pred HHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhh----hhhhHHhhhhhhhhhh
Q 020873 246 LAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGR----LVGCVLILVSVFYTMY 309 (320)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~----~~G~~lii~g~~~~~~ 309 (320)
.-..++..++.+.++.+....=.+..+..+.+.+-+.++++|+=|..+ ++|.++++.|..++..
T Consensus 218 ~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 218 IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 888999999999999999888888889999999999999999888776 4677888887776644
No 49
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.99 E-value=7.7e-09 Score=89.60 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCc-------ccCchh-HHHHHHHHHHH
Q 020873 175 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEF-------VLPSFY-SFLLMLVLSIL 246 (320)
Q Consensus 175 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~l~~~gi~ 246 (320)
.|..+.+.++++|+...+..|.. . +.++....++..+.+.+...+......+. ...+.. .+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 37889999999999999999984 3 46788888988888876655443322211 112222 24455666777
Q ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 247 AFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
....+.++++++++.+++.++.+.++.|+++.+++++++||+++..++.|..+.+.|+.+...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999887654
No 50
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.99 E-value=8.1e-09 Score=91.70 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=107.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCc---------h---hH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQ--SIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPM---------H---AR 73 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~--~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~---------~---~~ 73 (320)
.+..|.+++++++++|+...+..|... + +.++.....+....+.+.+.++....+....... . .+
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~-~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAM-TIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY 220 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence 345699999999999999999999876 5 7899999999999998888887654332110000 0 11
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 74 NLLVLRAL-VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 74 ~~~~~~~~-~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
...+..+. +....+.+++.+++++++..+++.....|+++.++++++++|+++..+++|..+++.|+.+..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 11222222 233344567789999999999999999999999999999999999999999999999999987554
No 51
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.93 E-value=1e-08 Score=86.86 Aligned_cols=207 Identities=10% Similarity=0.108 Sum_probs=127.7
Q ss_pred ccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccc---cCCc--cCCCccccccccCchh
Q 020873 99 LSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV---SGGL--VKPGEAISLNVRGSDH 173 (320)
Q Consensus 99 ~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~ 173 (320)
........+..|+++++..+...+||.++.++++..+...|+..-...+.+.... ..++ .+.+++.+......+.
T Consensus 4 vPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~~ 83 (222)
T TIGR00803 4 VPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGNP 83 (222)
T ss_pred ccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccccH
Confidence 3444556778889999999988999999999999999999988655444321000 0000 0000000001112345
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccCCCCchh-HHHHHHHHHHHHHHHHHhhhcCCcc----cCchhHHH-HHHHHHHHH
Q 020873 174 MLAVLVGLFSSITGGISYCLIKAGANASDQPL-VTVFSFGILASPAAGICLFFFEEFV----LPSFYSFL-LMLVLSILA 247 (320)
Q Consensus 174 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~l~~~gi~~ 247 (320)
..|....+.+..+-+...+..++..++++... .........+.+..... ....+.. ......+. ......+.+
T Consensus 84 ~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (222)
T TIGR00803 84 VVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSV-LLWSDGTLISNFGFFIGYPTAVWIVGLLN 162 (222)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHH-HhhcccchhhccCcccCCchHHHHHHHHH
Confidence 67888888888888888888877554333221 11122222222211111 1111111 00000111 112223445
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 306 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~ 306 (320)
..+..+..+.+|+.++...+....++++++.+++++++||+++..++.|+.+++.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 77778899999999999999999999999999999999999999999999999988754
No 52
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.91 E-value=1e-07 Score=80.10 Aligned_cols=223 Identities=9% Similarity=0.076 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 020873 74 NLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAV 153 (320)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 153 (320)
+.++.=.++...+..+.|.++.+++++.-..+-...-+|+.+++.-+++++++.++|+|+.....|++++-..+.....
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~- 165 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVT- 165 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeeccccc-
Confidence 3445568888899999999999999999999999999999999999999999999999999999999988766532211
Q ss_pred cCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhh-ccCCCCchhHHHHHHHHHHHHHHHHHhhhc------
Q 020873 154 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKA-GANASDQPLVTVFSFGILASPAAGICLFFF------ 226 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 226 (320)
..-..-+....|+.+.+.+-+.-|+.++..+| +.+.+.+|.....+.++.|.++...+....
T Consensus 166 -----------~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~ 234 (372)
T KOG3912|consen 166 -----------DPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSG 234 (372)
T ss_pred -----------CCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecC
Confidence 00111244678999999999999999998866 445678888888888888865544332211
Q ss_pred CCcc-cC--chhHHHHH---------HHHHHHH-HHHHHHH----HHhccccccccccchhhhHHHHHHHHHHHHhccCC
Q 020873 227 EEFV-LP--SFYSFLLM---------LVLSILA-FFAEVLL----ARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAP 289 (320)
Q Consensus 227 ~~~~-~~--~~~~~~~l---------~~~gi~~-~~~~~~~----~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~ 289 (320)
++++ .| ..++|... ++++..+ ..+-.++ ..-.|+.+++.=.+.-.+...+-=+++..+.-|.+
T Consensus 235 ~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f 314 (372)
T KOG3912|consen 235 DSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYF 314 (372)
T ss_pred CcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHH
Confidence 1111 11 12333221 1222222 2222222 23345666666667777777666677777888999
Q ss_pred chhhhhhhHHhhhhhhhhh
Q 020873 290 SFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 290 ~~~~~~G~~lii~g~~~~~ 308 (320)
...|+.|..+.+.|+++++
T Consensus 315 ~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 315 HLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.88 E-value=2.7e-08 Score=76.13 Aligned_cols=122 Identities=16% Similarity=0.121 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-HHHHHH
Q 020873 175 LAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-FFAEVL 253 (320)
Q Consensus 175 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~~~~~~ 253 (320)
.|.++.+.+.++-+...++.|+-.++..+..... . .. .... .. .++ +. .++.|+.. ..++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~-~-~~-----~~~~-~~------~~p--~~-~i~lgl~~~~la~~~ 64 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW-D-FI-----AALL-AF------GLA--LR-AVLLGLAGYALSMLC 64 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh-H-HH-----HHHH-HH------hcc--HH-HHHHHHHHHHHHHHH
Confidence 3678888899999999999998654322211111 0 00 0000 00 111 11 34566665 999999
Q ss_pred HHHhccccccccccchhhhHHHHHHHHHHH--HhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873 254 LARGLQLEKTSKVANVQYIEVALTQLWGMG--LSRIAPSFGRLVGCVLILVSVFYTMYIGPE 313 (320)
Q Consensus 254 ~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l--~~~e~~~~~~~~G~~lii~g~~~~~~~~~~ 313 (320)
|.+++++.+.+++.++....++...+.++. ++||++|..+++|..+|++|+++..+++++
T Consensus 65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999888888885 899999999999999999999998765544
No 54
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.86 E-value=1.4e-07 Score=74.94 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------cC-----Cchh
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMV------QSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FG-----PMHA 72 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~------~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--------~~-----~~~~ 72 (320)
|.++++.+.++.+...+..|...+ ++.++.++..+....+.+++.+.....++.. .. ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 678899999999999999998763 3789999999999999999888765433221 00 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 73 RNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
+..++..++.....+.+.+..++++++...++....-.+.+.++++++++|+++..++.|+.+++.|+.+-
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 55677778888899999999999999999999999999999999999999999999999999999998753
No 55
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.86 E-value=7.8e-08 Score=80.39 Aligned_cols=273 Identities=11% Similarity=0.076 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHhh-cCCCCH--HHHHHHHHHHHHHHHHHHHH-hhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020873 21 TIYFFMQVISDVFM-VQSIPL--FETVFMRCTVTLILSYLWLR-RSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR 96 (320)
Q Consensus 21 ~~~~~~~~~~k~~~-~~~~~~--~~~~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (320)
+.+=.......+.. .++..| +.+++.+++.-..+-+.-.. .+.++ +...|+.....+......+.+-..++.|
T Consensus 53 f~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~---r~iP~rtY~~la~~t~gtmGLsn~SlgY 129 (367)
T KOG1582|consen 53 FLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKR---RVIPWRTYVILAFLTVGTMGLSNGSLGY 129 (367)
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccc---eecchhHhhhhHhhhhhccccCcCcccc
Confidence 33444555555544 355664 55677776654333322211 12222 2223444455555666667777778888
Q ss_pred CCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHH
Q 020873 97 LPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLA 176 (320)
Q Consensus 97 ~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 176 (320)
++-..-.+..++--+-+.+.+.++-+.|-+..+..+..+...|.++....|... .++.+..|
T Consensus 130 LNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------------------sPNF~~~G 191 (367)
T KOG1582|consen 130 LNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------------------SPNFNLIG 191 (367)
T ss_pred ccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------------------CCCcceee
Confidence 887777777776666677788888999999999999999999999987766321 23567788
Q ss_pred HHHHHHHHHHhHHHHHHhhhccCC-CCchhHHHHHHHHHHHHHHHHHhhhcCCcc-------cCchhHHHHHHHHHHHHH
Q 020873 177 VLVGLFSSITGGISYCLIKAGANA-SDQPLVTVFSFGILASPAAGICLFFFEEFV-------LPSFYSFLLMLVLSILAF 248 (320)
Q Consensus 177 ~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~gi~~~ 248 (320)
+...-.+-++-|.-...+.+..+. ..+.....++...++.+..+......++.. ..+.+...+.+..+..+.
T Consensus 192 v~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy 271 (367)
T KOG1582|consen 192 VMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY 271 (367)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence 888888888877777777665543 334444556666666666655444443311 123446777778888888
Q ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 249 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
++........+..|+..++.+....-..++++++++|..++|....-|..+++.|+++..+.++.|
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 888888888899999999999999999999999999999999999999999999999988877544
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.85 E-value=1.3e-07 Score=70.66 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 81 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
++...++.++..++++.|.+.+..+.++.|+++.+++++++|||+++++++|+.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5566889999999999999999999999999999999999999999999999999999999875
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.83 E-value=6.8e-08 Score=85.09 Aligned_cols=129 Identities=18% Similarity=0.216 Sum_probs=101.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCT----VTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF 84 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (320)
..+|+.+.++++++++......|.. +.||....+.... .+.++..+. + +.++.. .+..+..++.|+...
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~~Gi~~~ 222 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--I-LAKPLK-KYAILLNILPGLMWG 222 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--h-cccchH-HHHHHHHHHHHHHHH
Confidence 3689999999999999999999963 4788887555554 333333333 1 112222 233334455777778
Q ss_pred HHHHHHHHHHh-cCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHH----HHHHHHHHHHHHhh
Q 020873 85 LSLFSFVYSIQ-RLPLSQATVLSFTAPIMASIAARIILREKLKIAEI----GGLALSFFGVLFIF 144 (320)
Q Consensus 85 ~~~~~~~~a~~-~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~----~g~~l~~~Gv~li~ 144 (320)
+++.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.+++++ +|.++.+.|+.++.
T Consensus 223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999 99999999998874
No 58
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.82 E-value=5.4e-08 Score=81.54 Aligned_cols=264 Identities=9% Similarity=0.038 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCccchhhhhhhhHHHHHHHH
Q 020873 39 PLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR-LPLSQATVLSFTAPIMASIAA 117 (320)
Q Consensus 39 ~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~~~ll~ 117 (320)
+...+++.++++-+.--+++. .+-...+++-..+.........+..+.+..+|+++ ++...=.++.+-.++-+++++
T Consensus 32 sgNLITFaqFlFia~eGlif~--skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g 109 (330)
T KOG1583|consen 32 SGNLITFAQFLFIATEGLIFT--SKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG 109 (330)
T ss_pred CeeehHHHHHHHHHHhceeee--ccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence 336677777776554433332 22111122333344455555666778888999996 677777777888999999999
Q ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccc-ccccCchhHHHHHHHHHHHHHhHHHHHHhhh
Q 020873 118 RIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAIS-LNVRGSDHMLAVLVGLFSSITGGISYCLIKA 196 (320)
Q Consensus 118 ~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~ 196 (320)
|++.|+|-+.+|..++++..+|+++.......+... --++.+.+ .......-..|+.+...+-+..|.-.+.++.
T Consensus 110 ~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~----~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~ 185 (330)
T KOG1583|consen 110 WILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS----KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQET 185 (330)
T ss_pred HHhccceeehhhhhhHHhhhhhheeEEeecCcchhh----hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876543322110 00001111 1112223456777777777776666665543
Q ss_pred cc-CCCCchhHHHHHHHHHHHHHHHHHhh-h---------cCCcccC-----chhHHHHHHHHHHHHHHHHHHHHHhccc
Q 020873 197 GA-NASDQPLVTVFSFGILASPAAGICLF-F---------FEEFVLP-----SFYSFLLMLVLSILAFFAEVLLARGLQL 260 (320)
Q Consensus 197 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~-----~~~~~~~l~~~gi~~~~~~~~~~~a~~~ 260 (320)
.= +...++...++|....+.+..+...- + .+....| -+..|.+++...+..-.+-=-.+..-.+
T Consensus 186 ~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te 265 (330)
T KOG1583|consen 186 TYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTE 265 (330)
T ss_pred HHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhce
Confidence 22 22345667788888877766543321 0 1111122 2344555544433333333333344456
Q ss_pred cccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873 261 EKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 261 ~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~ 308 (320)
.++-.++++..+.-.++.+++.+.++.++++..|+|..++..|-++..
T Consensus 266 ~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 266 TSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred ecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999999999999999987764
No 59
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.78 E-value=3.5e-07 Score=82.79 Aligned_cols=136 Identities=10% Similarity=0.118 Sum_probs=101.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHHhhCCC-----------CcCCc-
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQ------SIPLFETVFMRCTVTLILSYLWLRRSGQP-----------IFGPM- 70 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~------~~~~~~~~~~r~~~~~~~l~~~~~~~~~~-----------~~~~~- 70 (320)
+..|.+++++++++|+...+..|....+ +.++.....+....+.++++|+....... .....
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 3569999999999999999999987622 35677666666778888877765422110 00000
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 71 --HARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
......+..++.....+.+-+++++++++...++...+.|+++.++++++++|+++..+++|.++++.|+.+..
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11112233334444444555679999999999999999999999999999999999999999999999998764
No 60
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.77 E-value=5.4e-07 Score=79.14 Aligned_cols=134 Identities=20% Similarity=0.278 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHH-HHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVF-MRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGF-LSL 87 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 87 (320)
..|..+.+.++++|+......|... +.++..... +.+........+....... .....+.+......++... .++
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~~ 229 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLAY 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999764 556666655 3333222222222222222 2233444555555555555 799
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
.++++++++.+++.++.+..+.|++..++++++++|+++.++++|..+.+.|+.+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 230 LLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988654
No 61
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.75 E-value=4.3e-07 Score=69.50 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 90 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (320)
+|+++.+++.++-+...++-|... ++.+........ ...+ ... .......+.+.++..+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~-~~~g~~~~~~~~--~~~~------~~~-------~~p~~~i~lgl~~~~la~~~w 65 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGM-SRLPLLSHAWDF--IAAL------LAF-------GLALRAVLLGLAGYALSMLCW 65 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-hhCCCccchhHH--HHHH------HHH-------hccHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999876 444332211111 0000 000 111235677778888999999
Q ss_pred HHHHhcCCccchhhhhhhhHHHHHHHHHH--HhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 91 VYSIQRLPLSQATVLSFTAPIMASIAARI--ILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~--~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.+++++.|.+.+.++.+..+..+.+.++. ++||+++.++++|+.+.++|++++..++
T Consensus 66 ~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 66 LKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999888888885 8999999999999999999999987554
No 62
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.64 E-value=1.1e-06 Score=72.91 Aligned_cols=134 Identities=14% Similarity=0.042 Sum_probs=110.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHH-HHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRAL-VGFLSL 87 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 87 (320)
...|..+++.+..||+..-+..|.+. +..+.-.-+..-+..++++..|+-..+.......++....-+..++ ...+.+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g-~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPY 224 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAG-RAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPY 224 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhc-ccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccch
Confidence 46899999999999999999999876 4667777788889999999999877665544444444444443344 445888
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
.+-..++++.|...-+++.++.|.+..+.+++++||+++..||+++...+++..=.
T Consensus 225 sLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~ 280 (292)
T COG5006 225 SLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988887633
No 63
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.63 E-value=1.9e-07 Score=70.21 Aligned_cols=78 Identities=19% Similarity=0.202 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCc
Q 020873 235 YSFLLMLVLSILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPE 313 (320)
Q Consensus 235 ~~~~~l~~~gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~ 313 (320)
+.+.+....|+++ ..++.++++++++.+ ..++.+..++|+++.++++++++|+++..++.|..+++.|+.++.+.+.+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5566677778777 599999999999999 48889999999999999999999999999999999999999999887654
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.59 E-value=3.4e-06 Score=74.95 Aligned_cols=141 Identities=18% Similarity=0.106 Sum_probs=107.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCC----CCcCCchhHHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQ----PIFGPMHARNLLVLRALV 82 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 82 (320)
+++.+|-++++.+++++|..++..|... ++.|..+....-.+++.++..+....-.+ +...+.+....++..+++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v-~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLV-KKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 4678999999999999999999999987 78888888877777777777665442211 111222333333334444
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873 83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 148 (320)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~ 148 (320)
.+..+.+.-..+++.++....+-.-++.+++++...+++|+++++..++|.++.++|.++....+.
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAES 308 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCC
Confidence 555555666788889988888877889999999999999999999999999999999998865543
No 65
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=5.6e-07 Score=77.40 Aligned_cols=275 Identities=19% Similarity=0.129 Sum_probs=165.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 87 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (320)
+..+|..+++.+.+..|.+..+.|... .... . --.+.++......+. +.+..+-+...++.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl-~r~~----------~-------~~~ra~~gg~~yl~~-~~Ww~G~ltm~vGe 78 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGL-KRAG----------A-------SGLRAGEGGYGYLKE-PLWWAGMLTMIVGE 78 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHH-HHHh----------h-------hcccccCCCcchhhh-HHHHHHHHHHHHHh
Confidence 446778888888888888888888654 1110 0 001112211111111 33445556667899
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCcccccc
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLN 167 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 167 (320)
...|.|+.+.|.+..+++..++-+..++++..++|||++....+|..++++|-.+++.....++ ++.+.++-.+ .
T Consensus 79 i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~----~i~t~~el~~-~ 153 (335)
T KOG2922|consen 79 IANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ----EIESVEEVWE-L 153 (335)
T ss_pred HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc----ccccHHHHHH-H
Confidence 9999999999999999999999999999999999999999999999999999987765432211 0111111000 1
Q ss_pred ccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHH----------HHhh-hcCCcccCchhH
Q 020873 168 VRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAG----------ICLF-FFEEFVLPSFYS 236 (320)
Q Consensus 168 ~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~~ 236 (320)
..+.....-..+.+ ..++ +-....|+. +.+.+.. .|.++.+.+-.. .+-. +.++.....+..
T Consensus 154 ~~~~~Fliy~~~ii-l~~~--il~~~~~p~-~g~tnil---vyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~t 226 (335)
T KOG2922|consen 154 ATEPGFLVYVIIII-LIVL--ILIFFYAPR-YGQTNIL---VYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLT 226 (335)
T ss_pred hcCccHHHHHHHHH-HHHH--HHheeeccc-cccccee---ehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHH
Confidence 11111111111111 1111 111222221 1122222 223333322111 0011 122333445667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccC--Cchh----hhhhhHHhhhhhhhhhh
Q 020873 237 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIA--PSFG----RLVGCVLILVSVFYTMY 309 (320)
Q Consensus 237 ~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~--~~~~----~~~G~~lii~g~~~~~~ 309 (320)
|..+.....+...-....++|++..+++.++++.+ +--.++++-+.++++|- .+.. ...|+..++.|+.++..
T Consensus 227 y~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~ 306 (335)
T KOG2922|consen 227 WIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHR 306 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeee
Confidence 77777777777777778899999999999998888 44667788888889883 2332 46899999999998866
Q ss_pred cCCc
Q 020873 310 IGPE 313 (320)
Q Consensus 310 ~~~~ 313 (320)
.|..
T Consensus 307 ~kd~ 310 (335)
T KOG2922|consen 307 TKDM 310 (335)
T ss_pred eccc
Confidence 5443
No 66
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.55 E-value=1.2e-06 Score=74.53 Aligned_cols=137 Identities=13% Similarity=0.074 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcc-----cCchhHHHHHHHHHHHH
Q 020873 173 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV-----LPSFYSFLLMLVLSILA 247 (320)
Q Consensus 173 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~~ 247 (320)
...|+++++.+-+.|++...+.|-+. +.++..+..+..+.+.++........+++. ..+++.+......++.-
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44799999999999999999999863 567788888899998888776665555443 23566777777777777
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
..-...+.+|.+...+..+|.=.+++|++.+++|.++++|+++..|++...+..+|+....+..
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 8889999999999999999999999999999999999999999999999999999998877643
No 67
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.48 E-value=2e-06 Score=64.23 Aligned_cols=66 Identities=15% Similarity=0.015 Sum_probs=60.8
Q ss_pred HHHH-HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 244 SILA-FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 244 gi~~-~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
++++ ..++.++..++|+.+.+++.++.++.++++.+++++++||+++..+++|..+++.|+++...
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344 78999999999999999999999999999999999999999999999999999999987653
No 68
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.36 E-value=1.1e-05 Score=69.18 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=93.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSL 87 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (320)
+..+|+...+++.+.+.....+.|. .+.++....+=+.....+--..+.... +++...+ ..+.-++.|+....++
T Consensus 135 ~~~kgi~~Ll~stigy~~Y~~~~~~---~~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~~k-~~~~nil~G~~w~ign 209 (269)
T PF06800_consen 135 NMKKGILALLISTIGYWIYSVIPKA---FHVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFFEK-KSWKNILTGLIWGIGN 209 (269)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHh---cCCChhHhHHHHHHHHHHHHHHHhhcc-ccccccc-chHHhhHHHHHHHHHH
Confidence 4578999999999999999999996 467777777655444333333333323 2222233 3456688899999999
Q ss_pred HHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHH
Q 020873 88 FSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLA 134 (320)
Q Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~ 134 (320)
.+++.|.+..+.+.+..+.++..++..+-+.+++||+-+++++....
T Consensus 210 l~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~ 256 (269)
T PF06800_consen 210 LFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL 256 (269)
T ss_pred HHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence 99999999999999999999999999999999999999998765433
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.20 E-value=7.9e-05 Score=66.19 Aligned_cols=136 Identities=19% Similarity=0.243 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHh--hCCCC------cCCchhHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRR--SGQPI------FGPMHARNLLVLRALV 82 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~--~~~~~------~~~~~~~~~~~~~~~~ 82 (320)
|+.+++++.++-|......|... +.+.++.+..++...++.+...+.... .++.. ...++....++...+.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999876 467789999999999988888776655 33211 1223456677788888
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
+..++.+.+.-.++.++...+++..+--+++.+++.+++++++++.+|.|+.+.+.|..+-..++
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 88888888899999999999999999999999999999999999999999999999999876654
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.18 E-value=7.6e-05 Score=57.95 Aligned_cols=129 Identities=18% Similarity=0.272 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHhhCC-CCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873 13 LMCMALSSTIYFFMQVISDVFMVQSIP-LFETVFMRCTVTLILSYLWLRRSGQ-PIFGPMHARNLLVLRALVGFLSLFSF 90 (320)
Q Consensus 13 ~~~~~la~~~~~~~~~~~k~~~~~~~~-~~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (320)
.++++++..+-+....+.-... +... |....+..+..+.+.+..+....++ +....++..++.+.+|+++...-.+.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~-~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLG-KALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 4567777777777777776665 5554 9999999999999888877665444 33333445566777999999999999
Q ss_pred HHHHhcCCccchhhhhhhhHHHH-HHHHHH----HhcCcCcHHHHHHHHHHHHHHHH
Q 020873 91 VYSIQRLPLSQATVLSFTAPIMA-SIAARI----ILREKLKIAEIGGLALSFFGVLF 142 (320)
Q Consensus 91 ~~a~~~~~~~~a~~l~~~~Pi~~-~ll~~~----~l~e~~~~~~~~g~~l~~~Gv~l 142 (320)
.+..++++++.+..+.-..-++. .++..+ ..|+|+++++.+|+.+.++|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999988766555544 455553 35789999999999999999864
No 71
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.01 E-value=2.3e-05 Score=57.89 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 020873 17 ALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQR 96 (320)
Q Consensus 17 ~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 96 (320)
++.+++||.++++.|... ++.++..-.. |..-.... +. .. +.+.+--+.+-.+...|++.+.+
T Consensus 2 l~Vg~~WG~Tnpfik~g~-~~~~~~~~~~-~~~~~~~~----Ll----------~n-~~y~ipf~lNq~GSv~f~~~L~~ 64 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGS-SGLEKVKASL-QLLQEIKF----LL----------LN-PKYIIPFLLNQSGSVLFFLLLGS 64 (113)
T ss_pred eeehHHhcCchHHHHHHH-hhcCCccchH-HHHHHHHH----HH----------Hh-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999987 4443333221 21111111 00 11 22333455566778889999999
Q ss_pred CCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 97 LPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 97 ~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
.|.+.+.++. ++.=++|++.++++.+|..+++.++|+.+.+.|+.+.
T Consensus 65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999995 7888999999988878888999999999999998764
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.00 E-value=0.00022 Score=52.68 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
.....++...++.+...|+|++|.+.+..+ ....-+.+.+.+++++||++++.+++|+.+.+.|++.+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 444566677888999999999999999776 44888899999999999999999999999999999886
No 73
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.00 E-value=5.3e-05 Score=56.92 Aligned_cols=71 Identities=18% Similarity=0.315 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
..+..++...++.++..++++.|.+.+..+. ...-+.+.+++.+++||+++..+++|+.+.++|++.+-..
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3556677788999999999999999998875 5888999999999999999999999999999999888543
No 74
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.99 E-value=2.9e-05 Score=58.31 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 247 AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
-..+++++..++|+.+.+.+=.+ ..+..+.+.+.+++++||+++..+++|..+++.|++.+....+
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 38899999999999999877655 4688999999999999999999999999999999988866443
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.96 E-value=7.8e-05 Score=55.27 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 145 (320)
.....++...++.++..++++.|.+.+..+ ....-+.+.+++++++||++++.+++|+.+.++|++.+-.
T Consensus 33 ~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345566777889999999999999999887 4578888999999999999999999999999999999843
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.95 E-value=6.5e-05 Score=54.56 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
.++.-++...++.+.-.|+|++|.+.+..+ ....-+.+.+.+++++|||++..+++++.+.++|++.+-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 345566777889999999999999999776 558889999999999999999999999999999999874
No 77
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.88 E-value=0.00014 Score=53.42 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 77 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
....++...++.+...|+|+.|.+.+..+. ...-+.+.+++.+++||++++.+++|+.+.+.|++.+-
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 444667778899999999999999997764 48889999999999999999999999999999999873
No 78
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.88 E-value=2.2e-06 Score=71.74 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHH
Q 020873 173 HMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEV 252 (320)
Q Consensus 173 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 252 (320)
...|..+..++ ..+...++..++..+ .+|....-...+.-.....++......+..-....-.++.+=|+.+..+..
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 45677777777 667777777877653 234444333344434443444333333321112222333455777888888
Q ss_pred HHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 253 LLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 253 ~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
+.++++++.+-+-++.+.++.|+++.+++|.+++|+.|..+-.|..+.+.|++++.+.
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 8899999999999999999999999999999999999999999999999999998764
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.84 E-value=0.00017 Score=64.37 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHh-----h----hcCCcccCchhHHHHHHH
Q 020873 172 DHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICL-----F----FFEEFVLPSFYSFLLMLV 242 (320)
Q Consensus 172 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~l~~ 242 (320)
+...|+++.+++++|++-.++-.||. ++. +-+.. +. ..+....++.. + +.+.....+...+...+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k~w-~wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV-KKW-SWETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc-CCC-chhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 46689999999999999999999984 322 21111 11 11111111111 1 112223346777888888
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccCC---ch----hhhhhhHHhhhhhhhhhh
Q 020873 243 LSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAP---SF----GRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 243 ~gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~---~~----~~~~G~~lii~g~~~~~~ 309 (320)
.|++-.+++..+..++|+.+.++..++.. ++-+.+.+++.+++||-. +. .-++|.++++.|+.+..+
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998776 889999999999999865 32 357899999999999888
No 80
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.80 E-value=0.019 Score=50.64 Aligned_cols=289 Identities=11% Similarity=0.088 Sum_probs=171.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhh--CC----CCcCCchhHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRS--GQ----PIFGPMHARNLLVLRAL 81 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~ 81 (320)
+-..|+++..+++++-+...+-.|.. ++.+-...=....+++.++.-.....- ++ -...+.+......+.|+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv--k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV--KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc--CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 44679999999999999988888874 555544443444445444433222111 11 01123345566677788
Q ss_pred HHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhc-------CcCcHHHHHHHHHHHHHHHHhhccccccccc
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILR-------EKLKIAEIGGLALSFFGVLFIFRRILTTQAV 153 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~-------e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~ 153 (320)
.-.++...|-.+++|++.+...-+ ..+.-.+..++-.++.+ ++-.+..++|++++++|+.+..+.+...+.+
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 888889999999999999888554 44666666666555533 3445678999999999999998776432210
Q ss_pred cCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC-------CCCchhHH-H---HHHHHHHHHHHHHH
Q 020873 154 SGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN-------ASDQPLVT-V---FSFGILASPAAGIC 222 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~-------~~~~~~~~-~---~~~~~~~~~~~~~~ 222 (320)
..+ +..+.+--.|+..++.+.+..|..+.-...-.. ...++... + ......+.+.-...
T Consensus 162 --------~~~--~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~y 231 (344)
T PF06379_consen 162 --------LGE--EAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIY 231 (344)
T ss_pred --------hcc--chhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHH
Confidence 111 111233458999999999888777764433110 01112111 1 11111222222222
Q ss_pred hhhc----CCcc------c---CchhHHHHHHHHHHHHHHHHHHHHHhccccccc----cccchhhhHHHHHHHHHHHHh
Q 020873 223 LFFF----EEFV------L---PSFYSFLLMLVLSILAFFAEVLLARGLQLEKTS----KVANVQYIEVALTQLWGMGLS 285 (320)
Q Consensus 223 ~~~~----~~~~------~---~~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~----~~s~~~~~~pv~~~~~~~l~~ 285 (320)
++.. .++. . +-..+....++.|+.-...+..|-.+-.+.++. --.+.+.+..+++-+++. .+
T Consensus 232 c~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~l 310 (344)
T PF06379_consen 232 CLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-IL 310 (344)
T ss_pred HHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HH
Confidence 2211 1121 1 112445555556666667777777777777643 334677788999999996 47
Q ss_pred cc------CCchhhhhhhHHhhhhhhhhhh
Q 020873 286 RI------APSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 286 ~e------~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+| +.-..-+.|+.+++.+..++-+
T Consensus 311 kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 311 KEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 77 2334457888888887776543
No 81
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.79 E-value=0.00011 Score=54.49 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 248 FFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
..++.++..++|+.+.+.+=.+ ..+..+...+.+++++||++++.+++|..+++.|++.+...++
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~~ 106 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSR 106 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7889999999999998776555 5578888999999999999999999999999999999866443
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.79 E-value=2.2e-05 Score=65.14 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 020873 176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 255 (320)
Q Consensus 176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 255 (320)
.++.+++-++.|+..-....|.. ..|........+.+.++..+..++..+ .++...+..-+..|.+-.+++...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~G---G~p~qQ~lGtT~GALifaiiv~~~~~p--~~T~~~~iv~~isG~~Ws~GQ~~Qf 77 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFG---GKPYQQTLGTTLGALIFAIIVFLFVSP--ELTLTIFIVGFISGAFWSFGQANQF 77 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecC---CChhHhhhhccHHHHHHHHHHheeecC--ccchhhHHHHHHhhhHhhhhhhhhh
Confidence 56788999999988777666542 334444444444445554444333221 2456667777778888899999999
Q ss_pred Hhccccccccccchhh-hHHHHHHHHHHHHhccCCchhhh----hhhHHhhhhhhhhhhcCCc
Q 020873 256 RGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRL----VGCVLILVSVFYTMYIGPE 313 (320)
Q Consensus 256 ~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~~~~~~----~G~~lii~g~~~~~~~~~~ 313 (320)
+++++.+++++.++.. ++-+-+.+++++.++|..+..+. +..++++.|+++..++++.
T Consensus 78 ka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 78 KAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 9999999999999877 88999999999999999998874 5667888888888877653
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.64 E-value=0.00026 Score=62.34 Aligned_cols=142 Identities=17% Similarity=0.260 Sum_probs=112.1
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHH-HHHHhhCCCCc------CCchhHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFM---VQSIPLFETVFMRCTVTLILSY-LWLRRSGQPIF------GPMHARNLL 76 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~---~~~~~~~~~~~~r~~~~~~~l~-~~~~~~~~~~~------~~~~~~~~~ 76 (320)
+-+..|...+..+.+..+...++.|... .+++++..+..+..-++...+. |+......... ...-.....
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL 238 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH
Confidence 3567899999999999999999999887 3568999999999888888888 87654322211 111112223
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873 77 VLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 148 (320)
Q Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~ 148 (320)
....++....+..-|..++++++-.-++....-=.++...++++++|+.++.+..|..+++.|+.+-.+...
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 333466677778889999999999999998888888889999999999999999999999999999875543
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.59 E-value=0.00065 Score=52.74 Aligned_cols=128 Identities=15% Similarity=0.051 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccC---chhHHHHHHHHHHHHHHHHHH
Q 020873 177 VLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLP---SFYSFLLMLVLSILAFFAEVL 253 (320)
Q Consensus 177 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~~~~~ 253 (320)
.++++.+.+.-++...++.++.++..++....+.....+.+...+.....++.... +.+.|.+ .-|+++..--.+
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~--lGG~lG~~~V~~ 80 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAY--LGGLLGVFFVLS 80 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHh--ccHHHHHHHHHH
Confidence 45677777777777777777665545577777777777777776665555443322 2222333 267888888888
Q ss_pred HHHhccccccccccch-hhhHHHHHHHHHHH----HhccCCchhhhhhhHHhhhhhhh
Q 020873 254 LARGLQLEKTSKVANV-QYIEVALTQLWGMG----LSRIAPSFGRLVGCVLILVSVFY 306 (320)
Q Consensus 254 ~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l----~~~e~~~~~~~~G~~lii~g~~~ 306 (320)
.....++.+++..... ..-|-+.+.+++.+ .-+++++..+.+|..+++.|+.+
T Consensus 81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8889999999777654 45788899999986 33578999999999999998763
No 85
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.0014 Score=56.48 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=118.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCCchhHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLR 79 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~ 79 (320)
.++..|+.++...-+.=|..+...+... ...+++.++.+.-.++..+.-......++... ...++.++.+++-
T Consensus 168 ~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 168 ENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 4667899999999999999988888766 46788999999998888888776655554321 2356778899999
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873 80 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145 (320)
Q Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 145 (320)
+.+++.++.+.|+-++.-++-.-+.+..+--++..+++.+.++++++..||+|+.+.+.|+.+=..
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 999999999999999999888888899999999999999999999999999999999999876543
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.49 E-value=0.00046 Score=49.73 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 020873 77 VLRALVGFLSLFSFVYSIQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALS 136 (320)
Q Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~ 136 (320)
.....+...++.++..|+++.|.+.+..+. ....+.+.+.+.+++||++|..++.|+.+.
T Consensus 33 ~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 33 ILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp -HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 334457778889999999999999998765 589999999999999999999999998763
No 87
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.48 E-value=0.00026 Score=62.49 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=86.1
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCc-hhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-H
Q 020873 171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ-PLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA-F 248 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~-~ 248 (320)
.+...|..+++.++++.+.+..+.|+-..+.+. ..... ++ ..+...+..|. .|+.. .
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~------------------~~-~~~~l~~~~W~--~G~~~~~ 61 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG------------------SG-GRSYLRRPLWW--IGLLLMV 61 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc------------------ch-hhHHHhhHHHH--HHHHHHh
Confidence 457799999999999999999999984322111 00000 00 00101111111 22222 5
Q ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 249 FAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
.+..+-+.|+...+++.++++..+..++..+++..++||+++..++.|+.+++.|..+....
T Consensus 62 ~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 62 LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 56677788999999999999999999999999999999999999999999999998876543
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.37 E-value=0.00093 Score=49.06 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 247 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
-..++++...++|+.|.+.+ +...-+..+.+.+.+++++||++++.+++|..+++.|++.+..
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 38899999999999988654 4556688899999999999999999999999999999988754
No 89
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00071 Score=49.21 Aligned_cols=64 Identities=25% Similarity=0.077 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhc
Q 020873 247 AFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYI 310 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~ 310 (320)
-..++.+...++|+.+.+.+ +...-.-.+.+.+.+++++||+++..+++|..++++|++.+...
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 47889999999999888554 56667888999999999999999999999999999999887653
No 90
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.32 E-value=0.0009 Score=49.42 Aligned_cols=63 Identities=19% Similarity=0.025 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhccccccccc-cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873 246 LAFFAEVLLARGLQLEKTSKV-ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~-s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~ 308 (320)
+-..++++...++|+.|.+.+ +...-+..+.+.+.+++++||+++..+++|..+++.|++.+.
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 347899999999999988654 455567788899999999999999999999999999998763
No 91
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.29 E-value=0.0041 Score=51.57 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=104.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC------cCCchhHHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI------FGPMHARNLLVLRAL 81 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~ 81 (320)
...|.++.+++-.+=|.........- ...-+.-++.+...+.+.+.+..-+...++.. .+.+..++-+.+.++
T Consensus 170 ~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai 249 (337)
T KOG1580|consen 170 FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI 249 (337)
T ss_pred cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 45688899999999888888876653 12223344445445555555444333333211 122455667788899
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 82 VGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.+.+++.+.+.-+.+-++-.-+++..+--+|+.+.+.++++.+++.+||+|.++.+.|...-...+
T Consensus 250 ~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~G 315 (337)
T KOG1580|consen 250 ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDG 315 (337)
T ss_pred HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999987665444
No 92
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.17 E-value=0.004 Score=52.64 Aligned_cols=135 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH-HHHHHHHHHHHHHhhCCCCcCC----chhHHHHHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMR-CTVTLILSYLWLRRSGQPIFGP----MHARNLLVLRALV 82 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r-~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 82 (320)
+...|..+.+.+..+-+......++...++-..+...... .....+................ .+.........+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 3456666677777777788888877652221111111111 1122121111111111111000 1112233444566
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 020873 83 GFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 142 (320)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 142 (320)
......+....+++.++...+....+.++++.+++.++++|+++..++.|..+.+.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 677778899999999999999999999999999999999999999999999999988653
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.025 Score=44.07 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHHHHHHhhCCCCcCC--chhHHHHHHHHHHHHHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMVQSI-PLFETVFMRCTVTLILSYLWLRRSGQPIFGP--MHARNLLVLRALVGFLS 86 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~~~~-~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 86 (320)
...+++.+++..+-.....+.-... +.. +|....+..+..+..++..+...+.+.+... ++..++.+.+|+++...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence 4556777888888777777776665 444 5999999999988877776655433322221 33445667777777777
Q ss_pred HHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHh----cCcCcHHHHHHHHHHHHHHHHhh
Q 020873 87 LFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIIL----REKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 87 ~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l----~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
-........+.+++....+ ..-+-+...++-.+=. +++++..+++|+++.++|+.+..
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6666777777777777665 3444444444443322 47899999999999999955543
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.07 E-value=0.0014 Score=47.16 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccccccccc-hhhhHHHHHHHHHHHHhccCCchhhhhhhHHh
Q 020873 247 AFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRIAPSFGRLVGCVLI 300 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~li 300 (320)
-..++.++.+++|+.+.+.+=+ ...+..+...+.+.+++||++|..++.|..+|
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3888999999999999988854 45689999999999999999999999999875
No 95
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.0082 Score=46.73 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCc----hhHHHHHHHHHHHHHH
Q 020873 174 MLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPS----FYSFLLMLVLSILAFF 249 (320)
Q Consensus 174 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~gi~~~~ 249 (320)
....+.++.+.++-.......-++.+...+|....+.....+...+.......++...++ ...|.+ .-|+++.+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~--~GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAW--IGGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHH--Hccchhhh
Confidence 456777888888888888877777665566777777777777766665555433322221 122333 23455544
Q ss_pred HHHHHHHhcccccc-ccccchhhhHHHHHHHHHHHHhc----cCCchhhhhhhHHhhhhhhhhh
Q 020873 250 AEVLLARGLQLEKT-SKVANVQYIEVALTQLWGMGLSR----IAPSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 250 ~~~~~~~a~~~~~~-~~~s~~~~~~pv~~~~~~~l~~~----e~~~~~~~~G~~lii~g~~~~~ 308 (320)
--..-.....+.++ ........-|-+.+++++-+=+. .+++..++.|..+++.|+++..
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 44444455566665 44556667888888888876553 5789999999999999954443
No 96
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.95 E-value=0.0022 Score=54.93 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 233 SFYSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 233 ~~~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
++.+......-+++-.+.+.+.+.++++.+|+....+..+..+++.+++++++|++++..||.+..+.+.|+.+......
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34455555666777789999999999999999999999999999999999999999999999999999999998876543
No 97
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.92 E-value=0.013 Score=50.23 Aligned_cols=180 Identities=11% Similarity=0.069 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFV 91 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (320)
|++++++|++++|++.+-.|.. +..|++.+-++......+.-+.+...++.+ +..++.+++|...+.++.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~--~~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-----~f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF--DTGDGFFFQWVMCSGIFLVGLVVNLILGFP-----PFYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEec--cCCCcHHHHHHHHHHHHHHHHHHHHhcCCC-----cceeHHHhhhhhhhcCceeeh
Confidence 5788999999999999999974 455777777666655555544444444432 345677889999999999999
Q ss_pred HHHhcCCccchhhhhhhhHHHHHH-HHHH-HhcC-----cCcHHHHHHHHHHHHHHHHhhcccccccc-----ccCCc-c
Q 020873 92 YSIQRLPLSQATVLSFTAPIMASI-AARI-ILRE-----KLKIAEIGGLALSFFGVLFIFRRILTTQA-----VSGGL-V 158 (320)
Q Consensus 92 ~a~~~~~~~~a~~l~~~~Pi~~~l-l~~~-~l~e-----~~~~~~~~g~~l~~~Gv~li~~~~~~~~~-----~~~~~-~ 158 (320)
-.++.++.+....+.++.-+++-- .+++ ++++ +-+....+|+.++++|..+....+....+ +.... .
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~ 153 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSI 153 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCcccccccccccc
Confidence 999999999999998775555433 3333 3432 23456789999999998876543222100 00000 0
Q ss_pred CCC---ccc---c-c-cc-----cCchhHHHHHHHHHHHHHhHHHHHHhhhcc
Q 020873 159 KPG---EAI---S-L-NV-----RGSDHMLAVLVGLFSSITGGISYCLIKAGA 198 (320)
Q Consensus 159 ~~~---~~~---~-~-~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 198 (320)
++. +++ . + +. ..+.+..|..+++.+++.|+...+=.++..
T Consensus 154 ~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~ 206 (254)
T PF07857_consen 154 EDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQ 206 (254)
T ss_pred ccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHH
Confidence 100 000 0 0 00 112478899999999999988777555543
No 98
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.92 E-value=0.019 Score=50.98 Aligned_cols=142 Identities=13% Similarity=0.005 Sum_probs=103.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhc-C--CCCHHHHHHHHHHHHHHHHHHHHH---hhCCCC---cCCchhHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMV-Q--SIPLFETVFMRCTVTLILSYLWLR---RSGQPI---FGPMHARNLLVL 78 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~-~--~~~~~~~~~~r~~~~~~~l~~~~~---~~~~~~---~~~~~~~~~~~~ 78 (320)
+...|-+++++++++||..-+..|+-.. + .++--.+.-+-.++..++++|.++ ..++.+ +...+.....+.
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 3478999999999999999999987652 2 345444555555667777765433 223221 222333334444
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccc
Q 020873 79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILT 149 (320)
Q Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~ 149 (320)
..+..+++-+++..|.-.+++-.+++-..++-...++.-.++-++++++..++|.+..++|.+++..++..
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 55566799999999999999999998877776677777777778999999999999999999999877643
No 99
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.34 E-value=0.0087 Score=44.34 Aligned_cols=107 Identities=19% Similarity=0.126 Sum_probs=74.7
Q ss_pred HHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHH-HHHHHHHHHHHhccc
Q 020873 182 FSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSI-LAFFAEVLLARGLQL 260 (320)
Q Consensus 182 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi-~~~~~~~~~~~a~~~ 260 (320)
+.++.|+..+-+.|+..+..++..... +..-.... -..+|.+.+ .. ++..+-..|++.+.+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~--~~~~~~~~--------------Ll~n~~y~i--pf~lNq~GSv~f~~~L~~ 64 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASL--QLLQEIKF--------------LLLNPKYII--PFLLNQSGSVLFFLLLGS 64 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchH--HHHHHHHH--------------HHHhHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 346788888898988665433333221 11111111 012233322 32 357788889999999
Q ss_pred cccccccchh-hhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhh
Q 020873 261 EKTSKVANVQ-YIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFY 306 (320)
Q Consensus 261 ~~~~~~s~~~-~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~ 306 (320)
.+.+.+.++. .+.-+++++.++++.+|..+...++|+.+++.|+.+
T Consensus 65 ~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 65 ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 9999999984 899999999999888888888899999999999865
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.0026 Score=55.27 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=91.2
Q ss_pred cCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHH-
Q 020873 169 RGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILA- 247 (320)
Q Consensus 169 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~- 247 (320)
.+.++..|.++++.+.+.-+...++.||..++.. . + ....++...+.... ...+.|++.
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~----------~-------~~ra~~gg~~yl~~--~~Ww~G~ltm 74 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A----------S-------GLRAGEGGYGYLKE--PLWWAGMLTM 74 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h----------h-------cccccCCCcchhhh--HHHHHHHHHH
Confidence 3456788999999999998888888887432211 0 0 00001101111111 222456665
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCCcc
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGPEK 314 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~~~ 314 (320)
.++...-+.|....+++.++++..++.+.+.+++..+++|+++....+|+.+.++|...+....+++
T Consensus 75 ~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 75 IVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 7788888888889999999999999999999999999999999999999999999988887665444
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.082 Score=46.18 Aligned_cols=140 Identities=11% Similarity=0.148 Sum_probs=111.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------cCCchhHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI--------FGPMHARNLLVLR 79 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~ 79 (320)
+..|+..+....+.-+......|.-. ..+.+-+.+.++..+.+.+.+.......++.. ......+..+.++
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 34588899999999888888888765 46678889999999999988887765554311 1123445678889
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcccc
Q 020873 80 ALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRIL 148 (320)
Q Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~ 148 (320)
+++++.-..+-+.+.+..++...++.....-..+.+...++.+++.++...+|+.+++.|-++-.+...
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~ 303 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF 303 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence 999999999999999999998888888666677777777777899999999999999999988776653
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.59 E-value=0.068 Score=47.29 Aligned_cols=143 Identities=12% Similarity=0.048 Sum_probs=93.8
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCc----ccCchhHHHHHHHHH
Q 020873 171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLF--FFEEF----VLPSFYSFLLMLVLS 244 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~l~~~g 244 (320)
..-..|+++..+++++.+.+++=.||..+ -+-+..-..+.+.+-++...... ..++. ...+.+.+......|
T Consensus 3 ~~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 3 SAIILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred chHHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 34678999999999999999998888543 22233333344444333322211 11221 122445677778889
Q ss_pred HHHHHHHHHHHHhccccccccccc-hhhhHHHHHHHHHHHHhcc-------CCchhhhhhhHHhhhhhhhhhhcCCccc
Q 020873 245 ILAFFAEVLLARGLQLEKTSKVAN-VQYIEVALTQLWGMGLSRI-------APSFGRLVGCVLILVSVFYTMYIGPEKE 315 (320)
Q Consensus 245 i~~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~~~~~l~~~e-------~~~~~~~~G~~lii~g~~~~~~~~~~~~ 315 (320)
++-.++-..|-.+++|.+.+.... ..-+.-+++.++--++.|+ +-....++|..+.+.|+.+..+...+|+
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 999999999999999999877654 3446677777776555442 2223568999999999998877544443
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=94.85 E-value=0.2 Score=41.50 Aligned_cols=136 Identities=9% Similarity=0.071 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-CC-----cCCchhHHHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQ-PI-----FGPMHARNLLVLRALVGF 84 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~ 84 (320)
|++.+..-++.-+..-...|.-. ..+..-++..++.-+.+.+++..+.....+ ++ ..+.+....+++.|++.+
T Consensus 156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 44455555554444444455432 245567888999999999998887654332 21 123445567889999999
Q ss_pred HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.-..|--+.++-++.+.-+.+..+.-.-..+.+.++++|+.++..+.++++++...++-....
T Consensus 236 giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 236 GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999888888889999999999999999999999998777665443
No 104
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.48 E-value=1.8 Score=38.66 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 244 SILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 244 gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+++-.+-+-+++.++.+.+++.......+....+.++..++++++++..||...++...|+.+...
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 333355556999999999999999999999999999999999999999999999999999999884
No 105
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.62 Score=39.91 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=106.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCC-------cCCchhHHHHHHHH
Q 020873 9 RYSGLMCMALSSTIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQPI-------FGPMHARNLLVLRA 80 (320)
Q Consensus 9 ~~~g~~~~~la~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~ 80 (320)
+..|+.+.-.|-++=+.-.-+...+. ..+-+..+++++.+.++.+++...+...++-. ..+.+.....++-+
T Consensus 188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s 267 (367)
T KOG1582|consen 188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS 267 (367)
T ss_pred ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH
Confidence 45777777777777676666665543 23445688889999888888877766655421 12344455667777
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 81 LVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
+.+.++......-++.-++..+..+...---.|.+++.+++.++++.....+.++.+.|+++=.+++
T Consensus 268 ~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 268 LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 7777777777777778888888888888889999999999999999999999999999999988776
No 106
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=93.77 E-value=1.3 Score=32.08 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHH
Q 020873 15 CMALSSTIYFFMQVISDVFMVQSIP------LFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLF 88 (320)
Q Consensus 15 ~~~la~~~~~~~~~~~k~~~~~~~~------~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (320)
-++..+++||..+++.|... .+.+ .....+.|-.-...+ .|.+.+. .+..-.+..
T Consensus 7 ~lvaVgllWG~Tnplirrgs-~g~~~v~~~~~k~~~~lqe~~tl~l-----------------~w~Y~iP-FllNqcgSa 67 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGS-LGWDKVKSSSRKIMIALQEMKTLFL-----------------NWEYLIP-FLLNQCGSA 67 (125)
T ss_pred HHHHHHHHHccccHHHHHHH-hhHhhccCchHHHHHHHHHHHHHHH-----------------hHHHHHH-HHHHHhhHH
Confidence 35677889999999999876 3322 122222222111110 1122222 233345567
Q ss_pred HHHHHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 89 SFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 89 ~~~~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
+||.-+++.|.+.++.+.+ ++-.++.+.+..+-.|...++.++|..+.+.|+.+..
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 8899999999999999865 5667788888764445566677899999999987653
No 107
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.34 E-value=0.041 Score=44.56 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
..+++.|..++++++++.++.+..-+..|..+++++.+|+++...+++..++.+.|++...+.++
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 45778899999999999999999999999999999999999999999999999999988876543
No 108
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.55 E-value=3.8 Score=35.95 Aligned_cols=140 Identities=18% Similarity=0.212 Sum_probs=86.9
Q ss_pred cccCc--chhHHHHHHHHHHHHHHHHHHHHHhhc-CC---CCHHHHHHHHHHHHHHHHHHHH-HhhCCCCc---------
Q 020873 4 VWNGS--RYSGLMCMALSSTIYFFMQVISDVFMV-QS---IPLFETVFMRCTVTLILSYLWL-RRSGQPIF--------- 67 (320)
Q Consensus 4 ~~~~~--~~~g~~~~~la~~~~~~~~~~~k~~~~-~~---~~~~~~~~~r~~~~~~~l~~~~-~~~~~~~~--------- 67 (320)
.|++. ...|..+...+.++-|.-+.+.++... ++ -+|+...+--.-...+.+++.. ...|....
T Consensus 155 t~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~ 234 (349)
T KOG1443|consen 155 TYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQ 234 (349)
T ss_pred EecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhc
Confidence 34443 357888888898888888888877662 11 2455555544444444444443 33332111
Q ss_pred CCchhHH---HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 68 GPMHARN---LLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 68 ~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
++...++ .+.++|...+..-.+-+.=+..++.-..++..----+.+.+++.++.+|+++...|.|..++..|+..=
T Consensus 235 d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 235 DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 1111222 222333333333333345555666666666666677889999999999999999999999999999876
No 109
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=0.23 Score=42.48 Aligned_cols=139 Identities=13% Similarity=0.096 Sum_probs=101.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhhCC-------CCcCCchhHHHHHH
Q 020873 8 SRYSGLMCMALSSTIYFFMQVISDVFMVQSI--PLFETVFMRCTVTLILSYLWLRRSGQ-------PIFGPMHARNLLVL 78 (320)
Q Consensus 8 ~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~--~~~~~~~~r~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~ 78 (320)
-...|+++.+++.+.-+.+.+..|... +.. .-+.+.++..+.+.++.+|.+...++ +.....+.|..+.+
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l-~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVL-PPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheec-ccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 356899999999999999999999655 222 35778899999999999988776553 12234455667777
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 79 RALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
+|++++.....-..-+|-++|-.-.+-...-..--.+++..+++|..+...|-+-++.+.|-..-.+.+
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 888777555554555555555444443334445556788899999999999999999999987776554
No 110
>PRK02237 hypothetical protein; Provisional
Probab=91.11 E-value=1 Score=32.77 Aligned_cols=46 Identities=24% Similarity=0.270 Sum_probs=39.4
Q ss_pred cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
+.+.-.-.+.++++++..-|++|+..+++|..+.+.|..++.+.+|
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4566677888999999999999999999999999999988766543
No 111
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=88.60 E-value=0.66 Score=39.82 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHHHHHHHHHHHH
Q 020873 176 AVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSILAFFAEVLLA 255 (320)
Q Consensus 176 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~ 255 (320)
|.+.++.|+++++...+=.||... .+.....++++....+...+.....+. | .-+++..+-|.+-..++.+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~--gDg~~fQw~~~~~i~~~g~~v~~~~~~---p--~f~p~amlgG~lW~~gN~~~v 73 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT--GDGFFFQWVMCSGIFLVGLVVNLILGF---P--PFYPWAMLGGALWATGNILVV 73 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC--CCcHHHHHHHHHHHHHHHHHHHHhcCC---C--cceeHHHhhhhhhhcCceeeh
Confidence 457788999999999988888643 345666666665555554444333221 1 122333334555566666767
Q ss_pred Hhccccccccccchhh-hHHHHHHHHHHH-HhccCC-----chhhhhhhHHhhhhhhhhhhcC
Q 020873 256 RGLQLEKTSKVANVQY-IEVALTQLWGMG-LSRIAP-----SFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 256 ~a~~~~~~~~~s~~~~-~~pv~~~~~~~l-~~~e~~-----~~~~~~G~~lii~g~~~~~~~~ 311 (320)
-.+|.+|-...-.+=. .+.+.+-..+-+ +||+++ ....++|.++++.|..+...-|
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 7777777666554433 466666665543 455432 3457899999999988776543
No 112
>PRK02237 hypothetical protein; Provisional
Probab=87.27 E-value=5.1 Score=29.27 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=35.4
Q ss_pred ccchhhhhh-hhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873 99 LSQATVLSF-TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145 (320)
Q Consensus 99 ~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 145 (320)
.+.+-.-+. ..-+...+-.+.+-|+||++..++|..++++|+.++..
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 444443332 44455557788899999999999999999999988753
No 113
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=86.86 E-value=13 Score=32.33 Aligned_cols=137 Identities=13% Similarity=0.138 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHH---------hhCCCCcCC-c-hhHHHHH
Q 020873 10 YSGLMCMALSSTIYFFMQVISDVFMV-QSIPLFETVFMRCTVTLILSYLWLR---------RSGQPIFGP-M-HARNLLV 77 (320)
Q Consensus 10 ~~g~~~~~la~~~~~~~~~~~k~~~~-~~~~~~~~~~~r~~~~~~~l~~~~~---------~~~~~~~~~-~-~~~~~~~ 77 (320)
..|+.+..++.+.-+...+..+...+ .+=++-+..++......+.++.... ++.++...+ . -..+...
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 46777777888877878877765542 3457889999998887776654321 111110000 0 0012222
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 78 LRALVGFLSLFSFVYS----IQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 78 ~~~~~~~~~~~~~~~a----~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
.--++.++.+..-..+ -...++-++++...+-=.+..+++.+.++.++++..|+|..+.+.|..+-...
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2223334333332222 22345555566677788899999999999999999999999999999887543
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.68 E-value=1.9 Score=31.38 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=39.5
Q ss_pred cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
+.+.-.-.+.+.++++.+-|++|+..+++|..+.+.|..++.+.+|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 4556677888999999999999999999999999999988776544
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.50 E-value=3.9 Score=29.78 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=38.6
Q ss_pred HhcCCccchhhhh-hhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 94 IQRLPLSQATVLS-FTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 94 ~~~~~~~~a~~l~-~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
+|-.+.+.+-.-+ ...-+...+-.+.+-|+||++..++|..++++|+.++...
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3444444444333 2455566677888999999999999999999999888644
No 116
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=81.92 E-value=3.1 Score=35.53 Aligned_cols=136 Identities=13% Similarity=0.028 Sum_probs=87.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcC-Cch-hHHHHHHHHHHHH
Q 020873 7 GSRYSGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFG-PMH-ARNLLVLRALVGF 84 (320)
Q Consensus 7 ~~~~~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 84 (320)
.+..+|-+++++.+.+++.+++.-.+.. ++.|-.++...-.++++++-.......+++... .++ .....+...++.+
T Consensus 162 snp~~GD~lvi~GATlYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 162 SNPVKGDFLVIAGATLYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred CCCccCcEEEEecceeeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHH
Confidence 4567899999999999999999999887 899999999888888888888775544433221 121 1111111222222
Q ss_pred HHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873 85 LSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145 (320)
Q Consensus 85 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 145 (320)
+-+.+.=.-++..+++...+-.-++-++..++ ..++-+.++.-.++......|.++-..
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 22222222334444443333334455666665 567888999999999999999877643
No 117
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=81.71 E-value=3.5 Score=29.90 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhh
Q 020873 247 AFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYT 307 (320)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~ 307 (320)
+-.+-.+|+.-+++.+.+.+.++.+ +...++.+.+..+-.|...-..+.|..+++.|+.+.
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4556667777888999988887765 678889999987666677788899999999998764
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=80.12 E-value=5.1 Score=28.96 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred cchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcCC
Q 020873 267 ANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 267 s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
+...-.-.+.+.++.+..-|..|+.++++|..+.+.|..++...++
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 4556677888899999999999999999999999988776665543
No 119
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.95 E-value=2.3 Score=36.79 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 243 LSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 243 ~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
-++|-..+..+.+.++....++....+.--..+|.-+++.-+++.+++..||.|+..+.+|.+.+..
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3556677788888888888888888888888999999999999999999999999999999887644
No 120
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=78.05 E-value=0.79 Score=39.93 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh----hCC----CC-------cCCchhHHHHHHHH
Q 020873 16 MALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRR----SGQ----PI-------FGPMHARNLLVLRA 80 (320)
Q Consensus 16 ~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~----~~~----~~-------~~~~~~~~~~~~~~ 80 (320)
|+++.+|||..+...|++. +.-...+...+-+.++.++...+... .++ .+ ..........+.+|
T Consensus 1 M~itmlcwGSW~nt~kL~~-r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAE-RRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHH-hcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 4678899999999999976 43333344555555555544443321 121 11 01122334566778
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhh-hhHHHHHHHHHHHhcCcCcHH--HHHHHHHHHHHHHH
Q 020873 81 LVGFLSLFSFVYSIQRLPLSQATVLSF-TAPIMASIAARIILREKLKIA--EIGGLALSFFGVLF 142 (320)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~-~~Pi~~~ll~~~~l~e~~~~~--~~~g~~l~~~Gv~l 142 (320)
+...+++.+..+|+...+.+.+-++.. +.-++...+.++ +..|.++. ...|+.+.++.+++
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHH
Confidence 888899999999999999999988754 455555666664 45666543 34456555555544
No 121
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.98 E-value=7.8 Score=27.68 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhc
Q 020873 113 ASIAARIILREKLKIAEIGGLALSFFGVLFIFR 145 (320)
Q Consensus 113 ~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~ 145 (320)
-+.++.+.+||++++..+.+..+...|+.++.+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 356788899999999999999999999988753
No 122
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.93 E-value=13 Score=27.04 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhh
Q 020873 111 IMASIAARIILREKLKIAEIGGLALSFFGVLFIF 144 (320)
Q Consensus 111 i~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~ 144 (320)
..-..++.+++||++++....|..+.+.++..+.
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 3345678889999999999999999988877653
No 123
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=73.01 E-value=10 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHHHHHhccCCchhhhhhhHHhhhhhhhh
Q 020873 278 QLWGMGLSRIAPSFGRLVGCVLILVSVFYT 307 (320)
Q Consensus 278 ~~~~~l~~~e~~~~~~~~G~~lii~g~~~~ 307 (320)
..++.+++||++++.+..|..+++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999999998887654
No 124
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=66.69 E-value=5.9 Score=28.67 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 108 TAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 108 ~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
..-....+-.++.-|.|+++..++|..++++|+.++...
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 334445556778889999999999999999998877644
No 125
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.11 E-value=11 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHhccCCchhhhhhhHHhhhhhhhhh
Q 020873 278 QLWGMGLSRIAPSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 278 ~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~ 308 (320)
..++.+.++|++++.++.|..++..|+.+..
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999998877654
No 126
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=62.68 E-value=88 Score=25.90 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Q 020873 70 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQA 102 (320)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a 102 (320)
+..++.+. .++.....+...+...+.+|+...
T Consensus 144 ~~~~k~~~-~~~~~~~~w~~~~~~~~~lp~~in 175 (206)
T PF06570_consen 144 PSWWKYIL-ISVLAMVLWIVIFVLTSFLPPVIN 175 (206)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHHHHccccCC
Confidence 34444443 334444444444444555665543
No 127
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=56.42 E-value=4.4 Score=35.47 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhccCCc--hhhhhhhHHhhhhhhhhh
Q 020873 237 FLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRIAPS--FGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 237 ~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e~~~--~~~~~G~~lii~g~~~~~ 308 (320)
+.....-|++--+++.+..+++...+.+.+-++.. +..+.++.+.|+. ..+.+ ..-+.|..++++++++-.
T Consensus 72 v~~A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 72 VLFAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred HHHHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHH
Confidence 33444455665788999999999988888776664 5566677777754 34433 355678888888887754
No 128
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=45.36 E-value=7 Score=33.78 Aligned_cols=47 Identities=21% Similarity=0.104 Sum_probs=0.0
Q ss_pred CCccchhhhhhhhHHHH--HHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 97 LPLSQATVLSFTAPIMA--SIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 97 ~~~~~a~~l~~~~Pi~~--~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
.+-+...++++.+-+++ .++-.+|.|+-+-+...+++++.++-..+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~ 95 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVS 95 (381)
T ss_dssp -------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Confidence 33333344444333333 223333334556677777776666554443
No 129
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=44.33 E-value=3.6e+02 Score=27.49 Aligned_cols=44 Identities=20% Similarity=0.180 Sum_probs=32.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 100 SQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 100 ~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
+.+.++..++|+-.+.++.....+|.+.+.+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45577888999999999888877776555566666666676654
No 130
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=43.44 E-value=2.2e+02 Score=24.71 Aligned_cols=106 Identities=5% Similarity=0.040 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHHHHHHHHHhhCC-----CCcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 020873 20 STIYFFMQVISDVFM-VQSIPLFETVFMRCTVTLILSYLWLRRSGQ-----PIFGPMHARNLLVLRALVGFLSLFSFVYS 93 (320)
Q Consensus 20 ~~~~~~~~~~~k~~~-~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 93 (320)
.+++++.+.+....- .+++.|-....+..+....+...+++.++. +... .-..|.++..++....-+..|..|
T Consensus 103 l~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lI-ald~kqW~Mst~lS~al~VaF~~a 181 (314)
T COG3965 103 LCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLI-ALDTKQWLMSTCLSAALFVAFAAA 181 (314)
T ss_pred HHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655542 356777777777766655555554443331 2222 233466777777777777777777
Q ss_pred HhcCCccchhhhhhhhHHHHHHHHHHHhcCcCc
Q 020873 94 IQRLPLSQATVLSFTAPIMASIAARIILREKLK 126 (320)
Q Consensus 94 ~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~ 126 (320)
........+-...+.-|++.++.+..+..-++.
T Consensus 182 ~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg 214 (314)
T COG3965 182 WLLAGTKFAHLVVYADPMVLALVCLVFIPLPLG 214 (314)
T ss_pred HHhccCchhhhhcccCHHHHHHHHHheeeccHH
Confidence 777777777788888999999988877665554
No 131
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=43.13 E-value=1.8e+02 Score=23.71 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=78.4
Q ss_pred HhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhccC
Q 020873 120 ILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAGAN 199 (320)
Q Consensus 120 ~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 199 (320)
-++++-......|+++.+.|+..+..|..+... .....|..+. ++.+..-++..-.|+
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~------------------l~~~vG~~ll-i~Gi~~ii~af~~r~--- 71 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVA------------------LVYVVGILLL-ISGIIEIISAFGNRS--- 71 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHH------------------HHHHHHHHHH-HHHHHHHHHHHHhcc---
Confidence 356777778899999999999999988643311 3345664443 344444444444443
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCCcccCchhHHHHHHHHHH--H-HHHHHHHHHHhccccccccccchhhhHHHH
Q 020873 200 ASDQPLVTVFSFGILASPAAGICLFFFEEFVLPSFYSFLLMLVLSI--L-AFFAEVLLARGLQLEKTSKVANVQYIEVAL 276 (320)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi--~-~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~ 276 (320)
+++.... +.....+.....+.... |...........++ + +.+.........+..+ --......-++
T Consensus 72 -~~~~W~l-ll~Gil~i~~gil~~~~------~~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~~~---G~~w~ii~Gvl 140 (185)
T COG3247 72 -DNSFWPL-LLSGILSILLGILAGFN------PGLGALVLTYLIAIWFIASGILRIVVAFRLRSLP---GWWWMIISGVL 140 (185)
T ss_pred -cccchHH-HHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CcHHHHHHHHH
Confidence 1223333 22223333332222111 11122222222221 1 2333333332222222 34456666777
Q ss_pred HHHHHHHHhccCCchh----hhhhhHHhhhhhhhhh
Q 020873 277 TQLWGMGLSRIAPSFG----RLVGCVLILVSVFYTM 308 (320)
Q Consensus 277 ~~~~~~l~~~e~~~~~----~~~G~~lii~g~~~~~ 308 (320)
+++.++++.-+|.... -++|.-+++.|..+..
T Consensus 141 ~ii~g~ill~~P~~~~~~l~~llGI~li~~G~~~i~ 176 (185)
T COG3247 141 GIIAGLILLFNPVASAWILGLLLGIELIFQGIALIA 176 (185)
T ss_pred HHHHHHHHHHccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887744332 3566666777666554
No 132
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=41.82 E-value=1.4e+02 Score=23.67 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhccccccccccchhh-hHHHHHHHHHHHHhcc-CCchhhhhhhHHhhhhhhhhh
Q 020873 244 SILAFFAEVLLARGLQLEKTSKVANVQY-IEVALTQLWGMGLSRI-APSFGRLVGCVLILVSVFYTM 308 (320)
Q Consensus 244 gi~~~~~~~~~~~a~~~~~~~~~s~~~~-~~pv~~~~~~~l~~~e-~~~~~~~~G~~lii~g~~~~~ 308 (320)
...+..++..|...-.... ++.....+ ++-+....++.+++++ .+..-...+..+-++..++..
T Consensus 58 ~l~~iSa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i 123 (161)
T COG3476 58 ALIGISAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTI 123 (161)
T ss_pred HHHHHHHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHH
Confidence 3345666777766644444 55554444 8899999999999988 677777777766555544443
No 133
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=39.26 E-value=23 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=19.9
Q ss_pred ccccccccccchhhhHHHHHHHHHHHHh
Q 020873 258 LQLEKTSKVANVQYIEVALTQLWGMGLS 285 (320)
Q Consensus 258 ~~~~~~~~~s~~~~~~pv~~~~~~~l~~ 285 (320)
+..-+.-+.+.+.|+.|.++++++.+..
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677888888888888877653
No 134
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=38.82 E-value=1e+02 Score=19.48 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCccCCCccccccccCchhHHHHHHHHHHHHHhHHHHHHhhhc
Q 020873 128 AEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISLNVRGSDHMLAVLVGLFSSITGGISYCLIKAG 197 (320)
Q Consensus 128 ~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~ 197 (320)
...+|..+.++|++++..|+ .|....+.+-...|......|+.
T Consensus 4 v~v~G~~lv~~Gii~~~lPG---------------------------pG~l~i~~GL~iLa~ef~wArr~ 46 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPG---------------------------PGLLVIFLGLAILATEFPWARRL 46 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCC---------------------------CcHHHHHHHHHHHHHhhHHHHHH
Confidence 35678999999999998886 24455556656666666655553
No 135
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=34.20 E-value=13 Score=32.14 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccccccccccchhhhH----HHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhh
Q 020873 248 FFAEVLLARGLQLEKTSKVANVQYIE----VALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMY 309 (320)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~s~~~~~~----pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~ 309 (320)
+++.++|.+.+++.+++.-+++.+.- -++-.++++++-...+|...=.=-.+.++++++..+
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY 184 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLY 184 (381)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778888999998877766532 222334444333344554432223344445554444
No 136
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=33.79 E-value=76 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=27.4
Q ss_pred CccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 020873 98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGV 140 (320)
Q Consensus 98 ~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv 140 (320)
+.-.++.+.++.|+++.+++.++ -+++...+.+.++.++.|.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~~lg~ 114 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGAFLGL 114 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Confidence 34456788899999999888764 4455555555444444444
No 137
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.49 E-value=22 Score=26.83 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=9.8
Q ss_pred hhhHHhhhhhhhhhhcCCccc
Q 020873 295 VGCVLILVSVFYTMYIGPEKE 315 (320)
Q Consensus 295 ~G~~lii~g~~~~~~~~~~~~ 315 (320)
+|++++++.+.+..+|.+||.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 555555555555555554443
No 138
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=29.67 E-value=2e+02 Score=20.24 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=18.0
Q ss_pred HHhcCcCcHHHHHHHHHH------HHHHHHhhccc
Q 020873 119 IILREKLKIAEIGGLALS------FFGVLFIFRRI 147 (320)
Q Consensus 119 ~~l~e~~~~~~~~g~~l~------~~Gv~li~~~~ 147 (320)
+--+|++++|..+|=.+. .+|++++..|+
T Consensus 24 L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pd 58 (89)
T PF04550_consen 24 LASNEPITLRLFIGRVILGSAVSVVAGAALIQFPD 58 (89)
T ss_pred HccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCC
Confidence 334799999887664442 34555555565
No 139
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.06 E-value=1.8e+02 Score=27.56 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=19.3
Q ss_pred CchhhhhhhHHhhhhhhhhhhcCC
Q 020873 289 PSFGRLVGCVLILVSVFYTMYIGP 312 (320)
Q Consensus 289 ~~~~~~~G~~lii~g~~~~~~~~~ 312 (320)
++..|++...++++|+++..+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 688899999999999877765433
No 140
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.81 E-value=1.2e+02 Score=23.05 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=28.9
Q ss_pred CccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH
Q 020873 98 PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLF 142 (320)
Q Consensus 98 ~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~l 142 (320)
....++.+.+..|++..+++.+ ++..+...+..+++.+++|..+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~-l~~~~~~~e~~~~l~~l~~l~~ 109 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAV-LGSYLGGSELWAILGGLLGLAL 109 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888999998888765 4455554466666666666544
No 141
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.55 E-value=46 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.453 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 020873 129 EIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 129 ~~~g~~l~~~Gv~li~~~~ 147 (320)
|++|+++.+.|++++.+.-
T Consensus 1 kiigi~Llv~GivLl~~G~ 19 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFGY 19 (59)
T ss_pred CeeeehHHHHHHHHHHhhh
Confidence 3568889999999887664
No 142
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.20 E-value=1.3e+02 Score=23.11 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHhhhccCCCCc
Q 020873 171 SDHMLAVLVGLFSSITGGISYCLIKAGANASDQ 203 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~ 203 (320)
.++..|.++.-.=.+.|++|.+..|.+.+++++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ededS 134 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDEDEDS 134 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCCccc
Confidence 346677777777778899999999997654443
No 143
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.16 E-value=3e+02 Score=20.39 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.1
Q ss_pred cCcCcHHHHHHHHHHHHHHHHhhcc
Q 020873 122 REKLKIAEIGGLALSFFGVLFIFRR 146 (320)
Q Consensus 122 ~e~~~~~~~~g~~l~~~Gv~li~~~ 146 (320)
..|+++.+-.|+.+.++|+.++...
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~g 29 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIG 29 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999999999887653
No 144
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.09 E-value=76 Score=17.35 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.8
Q ss_pred hhhhhhhHHhhh
Q 020873 291 FGRLVGCVLILV 302 (320)
Q Consensus 291 ~~~~~G~~lii~ 302 (320)
...++|..++..
T Consensus 12 ~~~~~G~~l~~~ 23 (34)
T TIGR01167 12 LLLLLGLLLLGL 23 (34)
T ss_pred HHHHHHHHHHHH
Confidence 445566643333
No 145
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.07 E-value=1.7e+02 Score=18.56 Aligned_cols=31 Identities=6% Similarity=0.283 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHH
Q 020873 106 SFTAPIMASIAARIILREKLKIAEIGGLALS 136 (320)
Q Consensus 106 ~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~ 136 (320)
+...-.+..++.+++.||+.+.|..-+++++
T Consensus 9 Y~ig~~is~~iT~flskDs~~iRllsa~lIG 39 (55)
T PF10753_consen 9 YAIGAVISALITFFLSKDSLRIRLLSAILIG 39 (55)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4455667788889999998888877776654
No 146
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=23.79 E-value=2.1e+02 Score=18.39 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhcccc
Q 020873 131 GGLALSFFGVLFIFRRIL 148 (320)
Q Consensus 131 ~g~~l~~~Gv~li~~~~~ 148 (320)
.|++..+.|+.++..|+.
T Consensus 2 ~Gil~iv~Gi~~l~~p~~ 19 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDA 19 (72)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 578889999999998874
No 147
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.24 E-value=44 Score=19.72 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=8.0
Q ss_pred hhHHhhhhhhhhhhcCC
Q 020873 296 GCVLILVSVFYTMYIGP 312 (320)
Q Consensus 296 G~~lii~g~~~~~~~~~ 312 (320)
|.++++++.++..++++
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 44445555555544443
No 148
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=22.48 E-value=1.6e+02 Score=16.86 Aligned_cols=22 Identities=5% Similarity=0.030 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHhHHHHHHh
Q 020873 173 HMLAVLVGLFSSITGGISYCLI 194 (320)
Q Consensus 173 ~~~G~~~~l~a~~~~a~~~v~~ 194 (320)
...-.++-++.+.+||.|++..
T Consensus 4 RlliVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 4 RLLVIAAPVLAAASWALFNIGR 25 (36)
T ss_pred hHHHHHHHHHHHHHHHHHHhHH
Confidence 3445677788999999999854
No 149
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.45 E-value=48 Score=25.31 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=16.4
Q ss_pred ccccccchhhhHHHHHHHHHHHHh
Q 020873 262 KTSKVANVQYIEVALTQLWGMGLS 285 (320)
Q Consensus 262 ~~~~~s~~~~~~pv~~~~~~~l~~ 285 (320)
...+.+.+.|.-|+++++.+.++.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888877776543
No 150
>COG2034 Predicted membrane protein [Function unknown]
Probab=22.15 E-value=76 Score=22.15 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.2
Q ss_pred hhhhhhHHhhhhhhhhhhcCCcccccc
Q 020873 292 GRLVGCVLILVSVFYTMYIGPEKEMND 318 (320)
Q Consensus 292 ~~~~G~~lii~g~~~~~~~~~~~~~~~ 318 (320)
..++|..++.+|+.+..+.+.+.+.++
T Consensus 14 li~iGf~LifLGi~l~~~~~~~~~~~~ 40 (85)
T COG2034 14 LIFIGFLLIFLGIVLPAFSPFAESGSS 40 (85)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 457889999999988888776655433
No 151
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=21.83 E-value=4.6e+02 Score=21.64 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCccchh-----------hhhhhhHHHHHHHHHHHhcCcC-------------cHHHHHHHHHHHHHHH
Q 020873 86 SLFSFVYSIQRLPLSQAT-----------VLSFTAPIMASIAARIILREKL-------------KIAEIGGLALSFFGVL 141 (320)
Q Consensus 86 ~~~~~~~a~~~~~~~~a~-----------~l~~~~Pi~~~ll~~~~l~e~~-------------~~~~~~g~~l~~~Gv~ 141 (320)
....|..+...+..+..+ .+....|....++.+...+||. +.++..+.++.++|+.
T Consensus 128 ~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~ 207 (214)
T PF11139_consen 128 TMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGAL 207 (214)
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345565555554333322 2345778888888888877765 3456788899999998
Q ss_pred Hhh
Q 020873 142 FIF 144 (320)
Q Consensus 142 li~ 144 (320)
++.
T Consensus 208 l~~ 210 (214)
T PF11139_consen 208 LLG 210 (214)
T ss_pred HHH
Confidence 875
No 152
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.70 E-value=6.8e+02 Score=23.56 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHH
Q 020873 11 SGLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSF 90 (320)
Q Consensus 11 ~g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (320)
.|+++..+..+.+-..-+..| ..++|+|-...-...+...++.+.....- ......++++....+...+|
T Consensus 300 YgiLFI~LTF~~fflfE~~~~----~~iHpiQY~LVGlAl~lFYlLLLSlSEhi------~F~~AYliAa~a~i~Li~~Y 369 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK----LRIHPIQYLLVGLALVLFYLLLLSLSEHI------GFNLAYLIAALACIGLISLY 369 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHHHHHHhhh------chHHHHHHHHHHHHHHHHHH
Confidence 466666666666665566655 57899998888777666665555443321 22344455555555555555
Q ss_pred HHHHhc
Q 020873 91 VYSIQR 96 (320)
Q Consensus 91 ~~a~~~ 96 (320)
..++-+
T Consensus 370 ~~~vl~ 375 (430)
T PF06123_consen 370 LSSVLK 375 (430)
T ss_pred HHHHHh
Confidence 444433
No 153
>COG2323 Predicted membrane protein [Function unknown]
Probab=21.51 E-value=4.2e+02 Score=22.39 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHH
Q 020873 41 FETVFMRCTVTLILSYLWLRRSGQPIFGPMHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATVLSFTAPIMASIAARII 120 (320)
Q Consensus 41 ~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~ 120 (320)
..-.++|.++..+.++.+++.-+++....-...-......+....+...+..... ...+.+...+.-++..+++++-
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~---~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVS---ILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789998888888888877766554444444444445555555554443333 3333333333444455566655
Q ss_pred hc
Q 020873 121 LR 122 (320)
Q Consensus 121 l~ 122 (320)
.|
T Consensus 81 ~k 82 (224)
T COG2323 81 LK 82 (224)
T ss_pred hc
Confidence 54
No 154
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=21.15 E-value=2.5e+02 Score=18.36 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=34.8
Q ss_pred hhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 103 TVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 103 ~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.++..+.-+...+=+.++.+|+.-++..+++..++++.+....|.
T Consensus 14 avFiaLagl~~~I~GlLfD~~~~~~yg~~al~~Gv~~fV~~Lnp~ 58 (62)
T PF11177_consen 14 AVFIALAGLAAVIHGLLFDEERVFRYGVIALVVGVAGFVVMLNPA 58 (62)
T ss_pred HHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 344455566666777777889999999999999999988887664
Done!