Query 020873
Match_columns 320
No_of_seqs 188 out of 1870
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 3.5E-08 1.2E-12 72.6 13.3 72 76-147 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.9 1.6E-09 5.5E-14 82.6 6.2 69 243-311 35-105 (137)
3 2i68_A Protein EMRE; transmemb 98.9 2.6E-09 8.8E-14 81.5 6.8 71 77-147 34-105 (137)
4 3b5d_A Multidrug transporter E 98.8 4E-08 1.4E-12 72.3 11.3 69 243-311 35-105 (110)
5 2l2t_A Receptor tyrosine-prote 47.3 12 0.00043 21.7 2.1 13 304-316 30-42 (44)
6 2ks1_B Epidermal growth factor 39.7 18 0.00062 21.0 2.0 10 306-315 33-42 (44)
7 3arc_T Photosystem II reaction 12.3 2E+02 0.0067 15.3 2.6 17 276-292 14-30 (32)
8 2hac_A T-cell surface glycopro 8.6 2.7E+02 0.0093 14.8 2.2 18 110-127 13-30 (33)
9 3b9w_A Ammonium transporter fa 7.9 1.1E+03 0.036 20.8 16.7 26 69-94 173-198 (407)
10 2b2h_A AMT-1, ammonium transpo 6.3 1.3E+03 0.043 20.2 17.2 231 12-267 126-372 (399)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.92 E-value=3.5e-08 Score=72.59 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 76 LVLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
.+...++...++.++..++++.|.+.+..+ ..+.|+++.+++++++|||+++.+++|+.+.+.|++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356667778999999999999999999998 789999999999999999999999999999999999986543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.91 E-value=1.6e-09 Score=82.64 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHHH-HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 243 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 243 ~gi~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
.+++ ..+++++|.+++|+.+++++.++ ..+.|+++.+++++++||+++..+++|+.+|+.|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4544 48999999999999999999999 899999999999999999999999999999999999987654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.90 E-value=2.6e-09 Score=81.48 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhhh-hhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccc
Q 020873 77 VLRALVGFLSLFSFVYSIQRLPLSQATVL-SFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRI 147 (320)
Q Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l-~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~ 147 (320)
+++.++..+++.++.+++++.|++.+..+ ..+.|+++.+++++++||++++.+++|+.+.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 56677788999999999999999999998 899999999999999999999999999999999999987654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.84 E-value=4e-08 Score=72.25 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHH-HHHHHHHHHHhccccccccccch-hhhHHHHHHHHHHHHhccCCchhhhhhhHHhhhhhhhhhhcC
Q 020873 243 LSIL-AFFAEVLLARGLQLEKTSKVANV-QYIEVALTQLWGMGLSRIAPSFGRLVGCVLILVSVFYTMYIG 311 (320)
Q Consensus 243 ~gi~-~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~~~~~l~~~e~~~~~~~~G~~lii~g~~~~~~~~ 311 (320)
.++. ...++.++.+++|+.+.+.+.++ ..+.|+++.+++++++||+++..+++|..+++.|++.....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4444 48999999999999999999988 899999999999999999999999999999999999887654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.32 E-value=12 Score=21.67 Aligned_cols=13 Identities=8% Similarity=-0.207 Sum_probs=5.4
Q ss_pred hhhhhhcCCcccc
Q 020873 304 VFYTMYIGPEKEM 316 (320)
Q Consensus 304 ~~~~~~~~~~~~~ 316 (320)
..+..+++++++|
T Consensus 30 ~~~~~RRRr~~~k 42 (44)
T 2l2t_A 30 FAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHTTCSSCC
T ss_pred HHHHhhhhhhhhc
Confidence 3344444444443
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.72 E-value=18 Score=20.98 Aligned_cols=10 Identities=10% Similarity=-0.270 Sum_probs=3.9
Q ss_pred hhhhcCCccc
Q 020873 306 YTMYIGPEKE 315 (320)
Q Consensus 306 ~~~~~~~~~~ 315 (320)
+..+++++++
T Consensus 33 ~~~RRr~~~~ 42 (44)
T 2ks1_B 33 LFMRRRHIVR 42 (44)
T ss_dssp HHHHTTTCCS
T ss_pred HHhhhhHhhc
Confidence 3334444433
No 7
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=12.28 E-value=2e+02 Score=15.28 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=10.8
Q ss_pred HHHHHHHHHhccCCchh
Q 020873 276 LTQLWGMGLSRIAPSFG 292 (320)
Q Consensus 276 ~~~~~~~l~~~e~~~~~ 292 (320)
.++++-.++++|+|...
T Consensus 14 lgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 14 IALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHTSCCCCCC
T ss_pred HHHHHHhhhhcCCCCCC
Confidence 44555566788887643
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=8.59 E-value=2.7e+02 Score=14.82 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcCcCcH
Q 020873 110 PIMASIAARIILREKLKI 127 (320)
Q Consensus 110 Pi~~~ll~~~~l~e~~~~ 127 (320)
-+...++..++.|||+++
T Consensus 13 ~iYgii~T~Ly~R~K~~~ 30 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSR 30 (33)
T ss_dssp HHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344556667777777765
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=7.86 E-value=1.1e+03 Score=20.80 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=16.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH
Q 020873 69 PMHARNLLVLRALVGFLSLFSFVYSI 94 (320)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~a~ 94 (320)
+.+......++....-.++..|+-++
T Consensus 173 ~~hn~~~~~lGt~lLW~GWfGFN~Gl 198 (407)
T 3b9w_A 173 DATSDRFSMLGSMVLWLFWPSFATAI 198 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 34445556666666667777777773
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=6.31 E-value=1.3e+03 Score=20.23 Aligned_cols=231 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCCchhHHHHHHHHHHHHHHHHH
Q 020873 12 GLMCMALSSTIYFFMQVISDVFMVQSIPLFETVFMRCTVTLILSYLWLRRSG--QPIFGPMHARNLLVLRALVGFLSLFS 89 (320)
Q Consensus 12 g~~~~~la~~~~~~~~~~~k~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (320)
..++...+--.|+ ..-+.|.-. .|..--..+-.--..+++....++-+|+ ++...+.+......++....-.++..
T Consensus 126 ~~vY~~~ahwvW~-~GwL~~lG~-~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfG 203 (399)
T 2b2h_A 126 TFVYAPFAHWLWG-GGWLAKLGA-LDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFG 203 (399)
T ss_dssp HHTHHHHHHHHHS-SCHHHHTTC-CCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhheEC-chhHHhcCC-ccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHhcC---CccchhhhhhhhHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHhhccccccccccCCccCCCccccc
Q 020873 90 FVYSIQRL---PLSQATVLSFTAPIMASIAARIILREKLKIAEIGGLALSFFGVLFIFRRILTTQAVSGGLVKPGEAISL 166 (320)
Q Consensus 90 ~~~a~~~~---~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~ 166 (320)
|+-+-... ....+.+-..+..-...+-..++-..+ .+....++.=+.++=.+-..+.-..
T Consensus 204 FN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~---------------- 266 (399)
T 2b2h_A 204 FNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGF---------------- 266 (399)
T ss_dssp HHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTT----------------
T ss_pred hcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhcccccc----------------
Q ss_pred cccCchhHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHhhhcCCcc-----------cCchh
Q 020873 167 NVRGSDHMLAVLVGLFSSITGGISYCLIKAGANASDQPLVTVFSFGILASPAAGICLFFFEEFV-----------LPSFY 235 (320)
Q Consensus 167 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 235 (320)
...+-..+.++++++..-....+.+|+ +.|++....-.-...+..-.+...++..+.. ..-..
T Consensus 267 ----v~p~~A~iiG~iag~i~~~~~~l~~kl--~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~ 340 (399)
T 2b2h_A 267 ----VDVKGAIVIGLVAGIVCYLAMDFRIKK--KIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVS 340 (399)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHT--TCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCceeccchhhHHHHHHHHHHccccccCCCccccCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 020873 236 SFLLMLVLSILAFFAEVLLARGLQLEKTSKVA 267 (320)
Q Consensus 236 ~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s 267 (320)
|...++.....+....+...+.+|+...-|++
T Consensus 341 Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 341 QLIAVASTTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Done!