Query 020873
Match_columns 320
No_of_seqs 188 out of 1870
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 09:27:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 10.6 94 0.0069 14.4 2.5 16 275-290 13-28 (30)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 6.1 1.6E+02 0.011 13.3 2.8 17 175-191 3-19 (27)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 3.1 3.6E+02 0.026 13.2 3.5 21 171-191 15-35 (37)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 3.0 1E+03 0.075 18.4 20.5 73 70-144 193-271 (383)
5 d1gl4a1 d.22.1.2 (A:399-631) D 2.7 1.7E+02 0.012 21.8 0.3 37 92-129 43-79 (233)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.5 1E+03 0.074 17.2 7.2 30 111-140 36-65 (248)
7 d1fx8a_ f.19.1.1 (A:) Glycerol 2.3 1E+03 0.076 16.8 10.5 28 36-63 136-163 (254)
8 d2p7tc1 f.14.1.1 (C:86-119) Po 1.9 4.8E+02 0.035 12.1 1.2 7 277-283 23-29 (34)
9 d1v54b2 f.17.2.1 (B:1-90) Mito 1.7 8.6E+02 0.063 14.2 5.7 45 235-279 24-68 (90)
10 d1q90a3 f.23.23.1 (A:248-292) 1.6 7.1E+02 0.052 12.8 3.6 27 170-196 1-27 (45)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.55 E-value=94 Score=14.36 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhccCCc
Q 020873 275 ALTQLWGMGLSRIAPS 290 (320)
Q Consensus 275 v~~~~~~~l~~~e~~~ 290 (320)
+.+..+=.++++|+|.
T Consensus 13 ~i~lfffaiffreppr 28 (30)
T d2axtt1 13 IIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3444444456677664
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.11 E-value=1.6e+02 Score=13.28 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHHHH
Q 020873 175 LAVLVGLFSSITGGISY 191 (320)
Q Consensus 175 ~G~~~~l~a~~~~a~~~ 191 (320)
.|.+..-++.+.||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 56777777778877764
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.09 E-value=3.6e+02 Score=13.19 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHhHHHH
Q 020873 171 SDHMLAVLVGLFSSITGGISY 191 (320)
Q Consensus 171 ~~~~~G~~~~l~a~~~~a~~~ 191 (320)
..-.+|.++.+.-++.++-|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 445688888888777776553
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=2.97 E-value=1e+03 Score=18.40 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh--hhhhh----HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHh
Q 020873 70 MHARNLLVLRALVGFLSLFSFVYSIQRLPLSQATV--LSFTA----PIMASIAARIILREKLKIAEIGGLALSFFGVLFI 143 (320)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~--l~~~~----Pi~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv~li 143 (320)
++......++....-.++..|+-+-.......+.. .+... -.++.++...+.++|.+......-. ++|.+-+
T Consensus 193 ~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVai 270 (383)
T d1u7ga_ 193 PHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGA--IAGLVGV 270 (383)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHH
T ss_pred cCChhhhhHHHHHHHHHHHHhccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhc
Confidence 34445556666666677777766655443333321 12222 2223233333456777776544322 3455554
Q ss_pred h
Q 020873 144 F 144 (320)
Q Consensus 144 ~ 144 (320)
.
T Consensus 271 t 271 (383)
T d1u7ga_ 271 T 271 (383)
T ss_dssp T
T ss_pred c
Confidence 3
No 5
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.68 E-value=1.7e+02 Score=21.77 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHhcCCccchhhhhhhhHHHHHHHHHHHhcCcCcHHH
Q 020873 92 YSIQRLPLSQATVLSFTAPIMASIAARIILREKLKIAE 129 (320)
Q Consensus 92 ~a~~~~~~~~a~~l~~~~Pi~~~ll~~~~l~e~~~~~~ 129 (320)
.|+..+|+..+..+..+.|+.. .++|+|-+|......
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~N 79 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccC
Confidence 4667788888888888888887 678999888766554
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.46 E-value=1e+03 Score=17.18 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHH
Q 020873 111 IMASIAARIILREKLKIAEIGGLALSFFGV 140 (320)
Q Consensus 111 i~~~ll~~~~l~e~~~~~~~~g~~l~~~Gv 140 (320)
+.+.++.++++.+|.-+.+++-=.+.+..+
T Consensus 36 ~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 444555566666666665555443333333
No 7
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=2.28 E-value=1e+03 Score=16.83 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhC
Q 020873 36 QSIPLFETVFMRCTVTLILSYLWLRRSG 63 (320)
Q Consensus 36 ~~~~~~~~~~~r~~~~~~~l~~~~~~~~ 63 (320)
++.+..+..+..++.+.++...++....
T Consensus 136 ~~~s~~~~~~~E~v~Tf~lv~~il~~~~ 163 (254)
T d1fx8a_ 136 PHINFVQAFAVEMVITAILMGLILALTD 163 (254)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888888888888776665443
No 8
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.86 E-value=4.8e+02 Score=12.10 Aligned_cols=7 Identities=14% Similarity=-0.306 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020873 277 TQLWGMG 283 (320)
Q Consensus 277 ~~~~~~l 283 (320)
+.+..|+
T Consensus 23 aa~atwf 29 (34)
T d2p7tc1 23 AALATWF 29 (34)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 9
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.73 E-value=8.6e+02 Score=14.21 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhHHHHHHH
Q 020873 235 YSFLLMLVLSILAFFAEVLLARGLQLEKTSKVANVQYIEVALTQL 279 (320)
Q Consensus 235 ~~~~~l~~~gi~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~~ 279 (320)
++........+...+.+.+.....++....+..--+.+|.+++++
T Consensus 24 Hd~~m~i~~~I~~~V~~~~~~~~~~~~~~~~~~~~~~lEiiWTii 68 (90)
T d1v54b2 24 HDHTLMIVFLISSLVLYIISLMLTTKLTHTSTMDAQEVETIWTIL 68 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCCCTTHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHH
No 10
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.61 E-value=7.1e+02 Score=12.79 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHhHHHHHHhhh
Q 020873 170 GSDHMLAVLVGLFSSITGGISYCLIKA 196 (320)
Q Consensus 170 ~~~~~~G~~~~l~a~~~~a~~~v~~k~ 196 (320)
+.....|.+..+.+.+..-+..++-||
T Consensus 1 nP~Rv~gll~F~~~v~laQi~LVLKKK 27 (45)
T d1q90a3 1 NPARIQGLLVFFSFVLLTQVLLVLKKK 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Done!