BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020874
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKE-LGVTWDVDLYGELLKIGGGKERMTAYFN 136
A++FD DGVL DTE + F + E G + DL+ +I G ER
Sbjct: 2 EAVIFDXDGVLXDTEP----LYFEAYRRVAESYGKPYTEDLHR---RIXGVPER------ 48
Query: 137 KTGWP--EKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
G P +A ++ + F +H+ K +F +LL PGV + ++ K +K
Sbjct: 49 -EGLPILXEALEIKDSLENFKKRVHEEKKRVF-----SELLKENPGVREALEFVKSKRIK 102
Query: 195 VAVC-STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253
+A+ ST +A+ + L E+ + +F GD V KPDP IY L L V P
Sbjct: 103 LALATSTPQREALERLRRLDL--EKYFDVXVF-GDQVKNGKPDPEIYLLVLERLNVVPEK 159
Query: 254 CVVVEDSTIGLAAAKAAGMKCI 275
VV EDS G+ AAK+AG++ I
Sbjct: 160 VVVFEDSKSGVEAAKSAGIERI 181
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 18/202 (8%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A +FD DG+L+D+E R + LGV D+ EL G +
Sbjct: 11 AAIFDXDGLLIDSEPLWDRAELD---VXASLGV--DISRRNELPDTLGLRIDXVVDLWYA 65
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
P PS +E ++ IA + L+E+ PL PGV + + E+G+ V +
Sbjct: 66 RQPWNGPSRQEVVERVIAR--------AISLVEETR-PLLPGVREAVALCKEQGLLVGLA 116
Query: 199 STSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVV 257
S S + +++ F L R + + + +P KP P +Y A+ LGVDP +CV +
Sbjct: 117 SASPLHXLEKVLTXFDL---RDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVAL 173
Query: 258 EDSTIGLAAAKAAGMKCIVTKS 279
EDS G A+KAA + IV +
Sbjct: 174 EDSVNGXIASKAARXRSIVVPA 195
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 25/199 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A++FD DGV+ DT + H +++ +++ + +D D E LK +E + +
Sbjct: 4 AVIFDLDGVITDT-AEYHFLAWKHI--AEQIDIPFDRD-XNERLKGISREESLESILIFG 59
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVKVA 196
G K + E++ L RK + LI KL P L PG+ +L+ Q + +K+
Sbjct: 60 GAETKYTNAEKQ------ELXHRKNRDYQXLI-SKLTPEDLLPGIGRLLCQLKNENIKIG 112
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----RKKPDPAIYTLAASTLGVDPS 252
+ S+S + I+ R I F V P + KPDP I+ AA+ L V P+
Sbjct: 113 LASSS--RNAPKIL------RRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAXLDVSPA 164
Query: 253 SCVVVEDSTIGLAAAKAAG 271
C +ED+ G++A K+AG
Sbjct: 165 DCAAIEDAEAGISAIKSAG 183
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
++FD DGV+ DT H ++ E+G++ D + E LK E +
Sbjct: 7 GVIFDLDGVITDTAHL-HFQAWQQI--AAEIGISIDAQ-FNESLKGISRDESLRRILQHG 62
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFM-VLIEKKLLPLRPGVAKLIDQALEKGVKVAV 197
G ++ + +ER Q L RK L++ L E + + PG+ L+ + + V +
Sbjct: 63 G--KEGDFNSQERAQ----LAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGL 116
Query: 198 CSTS-NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK--KPDPAIYTLAASTLGVDPSSC 254
S S N + A + + F D K KPDP I+ A + LGV P +C
Sbjct: 117 ASVSLNAPTILAALEL-------REFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQAC 169
Query: 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFL 288
+ +ED+ G+ A A+GM+ + + T + L
Sbjct: 170 IGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLL 203
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 21/204 (10%)
Query: 73 ASVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDL-YGELLKIGGGKERM 131
++ + A +FD DGV+ DT + +++ V D+D + E LK G RM
Sbjct: 22 SNAMIEAFIFDLDGVITDTAYYHYM-----AWRKLAHKVGIDIDTKFNESLK---GISRM 73
Query: 132 TAYFNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLI-EKKLLPLRPGVAKLIDQALE 190
+ + K S EE K +A + K ++ LI E + PG+ L+
Sbjct: 74 ESLDRILEFGNKKYSFSEEEKVRMA---EEKNNYYVSLIDEITSNDILPGIESLLIDVKS 130
Query: 191 KGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV--VPRKKPDPAIYTLAASTLG 248
+K+ + S S K +++ L ++ + F D KP P I+ ++A L
Sbjct: 131 NNIKIGLSSAS--KNAINVLNHLGISDKFD----FIADAGKCKNNKPHPEIFLMSAKGLN 184
Query: 249 VDPSSCVVVEDSTIGLAAAKAAGM 272
V+P +C+ +ED++ G+ A +A M
Sbjct: 185 VNPQNCIGIEDASAGIDAINSANM 208
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 38/242 (15%)
Query: 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNK 137
+ L+FD DG+L+DTE+ + + F + + +WDV + GK+ + A
Sbjct: 31 THLIFDMDGLLLDTER-LYSVVFQEICNRYDKKYSWDVK------SLVMGKKALEAAQII 83
Query: 138 TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP---LRPGVAKLIDQALEKGVK 194
+ S EE + + +T+L K++ P L PG KLI + G+
Sbjct: 84 IDVLQLPMSKEE-------LVEESQTKL------KEVFPTAALMPGAEKLIIHLRKHGIP 130
Query: 195 VAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD--VVPRKKPDPAIYTLAASTL 247
A+ ++S SF + R ++ I GD V KPDP I+ A
Sbjct: 131 FALATSSRS------ASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRF 184
Query: 248 GVDPS--SCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305
P+ C+V ED+ G+ AA AAGM+ ++ + + A V + + D E F
Sbjct: 185 SPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELF 244
Query: 306 DL 307
L
Sbjct: 245 GL 246
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 141 PEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCST 200
P A + EE ++F A + L L PGV + +D+ G ++A+ ++
Sbjct: 80 PRVAEATEEYGRRFGAHVRAAGPRL-----------LYPGVLEGLDRLSAAGFRLAMATS 128
Query: 201 SNEKAVTAIVSFLLGPERAEKIQIFAGD-VVPRKKPDPAIYTLAASTLGVDPSSCVVVED 259
EKA AI L G + ++ + AGD V R KP P + A LG+ P CVV+ D
Sbjct: 129 KVEKAARAIAE-LTGLD--TRLTVIAGDDSVERGKPHPDMALHVARGLGIPPERCVVIGD 185
Query: 260 STIGLAAAKAAGMKCIVTKSSYTAEEDFL--NADAVFDC 296
+AAGM I + ++ + AD V D
Sbjct: 186 GVPDAEMGRAAGMTVIGVSYGVSGPDELMRAGADTVVDS 224
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 89/215 (41%), Gaps = 41/215 (19%)
Query: 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTG 139
++FDCDGVLVD+E ++ ++ E G V+ GE F
Sbjct: 7 IIFDCDGVLVDSEIIAAQV---ESRLLTEAGYPISVEEXGE-------------RFAGXT 50
Query: 140 WPEKAPSDEEERK-QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA-- 196
W E E ASL + +L +E+ + K+ID GVK A
Sbjct: 51 WKNILLQVESEASIPLSASLLDKSEKLLDXRLERDV--------KIID-----GVKFALS 97
Query: 197 -------VCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG 248
+CS S+ + ++ + L P A I R KP P I+ A+ G
Sbjct: 98 RLTTPRCICSNSSSHRLDXXLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFG 157
Query: 249 VDPSSCVVVEDSTIGLAAAKAAGMKCI-VTKSSYT 282
V P VVVEDS G+ A+AAG + I T +S+T
Sbjct: 158 VSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHT 192
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 33/210 (15%)
Query: 79 ALLFDCDGVLVDTEKDGH--RISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A++FD DGVL DTEK + R SF +K G++ +D IGG +++
Sbjct: 7 AIIFDXDGVLFDTEKYYYDRRASF---LGQK--GIS--IDHLPPSFFIGGNTKQV----- 54
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLR----PGVAKLIDQALEKG 192
W E DE ++ +++L E + + LP + P V K++++ +G
Sbjct: 55 ---W-ENILRDEYDKWD-VSTLQ----EEYNTYKQNNPLPYKELIFPDVLKVLNEVKSQG 105
Query: 193 VKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVVPRKKPDPAIYTLAASTLGVD 250
+++ + S+S V A + L R + + +G+ KP+P IY A L V
Sbjct: 106 LEIGLASSS----VKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQ 161
Query: 251 PSSCVVVEDSTIGLAAAKAAGMKCIVTKSS 280
S +++EDS G+AA AA ++ + +
Sbjct: 162 ASRALIIEDSEKGIAAGVAADVEVWAIRDN 191
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 30/201 (14%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKE--KELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LFD DGV+ DT + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFDLDGVITDTAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVK 194
+K S EE ++ L KRK + ++ +I+ + P + PG+ +L+ +K
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQD-VSPADVYPGILQLLKDLRSNKIK 109
Query: 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----KPDPAIYTLAASTLGVD 250
+A+ S S FLL ER F P + KP P I+ AA +GV
Sbjct: 110 IALASASKNG------PFLL--ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVA 161
Query: 251 PSSCVVVEDSTIGLAAAKAAG 271
PS + +EDS G+ A K +G
Sbjct: 162 PSESIGLEDSQAGIQAIKDSG 182
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKE--KELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LFD DGV+ D + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFDLDGVITDPAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVK 194
+K S EE ++ L KRK + ++ +I+ + P + PG+ +L+ +K
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQD-VSPADVYPGILQLLKDLRSNKIK 109
Query: 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----KPDPAIYTLAASTLGVD 250
+A+ S S FLL ER F P + KP P I+ AA +GV
Sbjct: 110 IALASASKNG------PFLL--ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVA 161
Query: 251 PSSCVVVEDSTIGLAAAKAAG 271
PS + +EDS G+ A K +G
Sbjct: 162 PSESIGLEDSQAGIQAIKDSG 182
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 90/201 (44%), Gaps = 30/201 (14%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKE--KELGVTWDVDLYGELLKIGGGKERMTAYFN 136
A+LF DGV+ DT + R +K +E+G+ + E LK G R +
Sbjct: 4 AVLFXLDGVITDTAEYHFR-----AWKALAEEIGINGVDRQFNEQLK---GVSREDSLQK 55
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLP--LRPGVAKLIDQALEKGVK 194
+K S EE ++ L KRK + ++ +I+ + P + PG+ +L+ +K
Sbjct: 56 ILDLADKKVSAEEFKE-----LAKRKNDNYVKMIQD-VSPADVYPGILQLLKDLRSNKIK 109
Query: 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----KPDPAIYTLAASTLGVD 250
+A+ S S FLL ER F P + KP P I+ AA +GV
Sbjct: 110 IALASASKNG------PFLL--ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVA 161
Query: 251 PSSCVVVEDSTIGLAAAKAAG 271
PS + +EDS G+ A K +G
Sbjct: 162 PSESIGLEDSQAGIQAIKDSG 182
>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
pdb|2YY6|B Chain B, Crystal Structure Of The Phosphoglycolate Phosphatase From
Aquifex Aeolicus Vf5
Length = 213
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFN 136
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 3 VILFDLDGTLIDSAKD-IALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL---- 52
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA 196
EK D+ R++++ K E +V + P + ++ KG K+A
Sbjct: 53 -----EKVLKDKF-REEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLA 101
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256
V S E+ I+ L + I GD KKP P LG +P ++
Sbjct: 102 VVSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALI 159
Query: 257 VEDSTIGLAAAKAAGMKCIVTKSSY 281
V D+ + A K AG K + Y
Sbjct: 160 VGDTDADIEAGKRAGTKTALALWGY 184
>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase
From Aquifex Aeolicus
Length = 222
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTW--DVDLYGELLKIGGGKERMTAYFN 136
+LFD DG L+D+ KD ++ T KE L + +V Y IGGG +
Sbjct: 5 VILFDLDGTLIDSAKDI-ALALEKTLKELGLEEYYPDNVTKY-----IGGGVRALL---- 54
Query: 137 KTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVA 196
EK D+ R++++ K E +V + P + ++ KG K+A
Sbjct: 55 -----EKVLKDKF-REEYVEVFRKHYLENPVVYTKP-----YPEIPYTLEALKSKGFKLA 103
Query: 197 VCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256
V S E+ I+ L + I GD KKP P LG +P ++
Sbjct: 104 VVSNKLEELSKKILDILNLSGYFD--LIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALI 161
Query: 257 VEDSTIGLAAAKAAGMKCIVTKSSY 281
V D+ + A K AG K + Y
Sbjct: 162 VGDTDADIEAGKRAGTKTALALWGY 186
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD 228
+ LRP V ++ + E+G +V V S +N T PE +I I+
Sbjct: 89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT------FWPEEYPEIRDAADHIYLSQ 142
Query: 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF 287
+ +KP+ IY G PS V +D+ + A G+ I+ K T + F
Sbjct: 143 DLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTTIPDYF 201
>pdb|2HI0|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
pdb|2HI0|B Chain B, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Yp_619066.1) From Lactobacillus Delbrueckii Subsp.
Bulgaricus Atcc Baa-365 At 1.51 A Resolution
Length = 240
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 82/217 (37%), Gaps = 50/217 (23%)
Query: 79 ALLFDCDGVLVDT------------EKDGHRISFNDTFKEKELGVTWDVDLYGEL-LKIG 125
A +FD DG ++DT E+ GHR F + G V + L + G
Sbjct: 6 AAIFDXDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAG 65
Query: 126 GGKERMTAYFNK-TGWPEKAPSDEEER-----KQFIASLHKRKTELFMVLIEKKLLPLRP 179
+E + A+ K PE E R K + A + KT F P
Sbjct: 66 SSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPF------------P 113
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS--------FLLGPERAEKIQIFAGDVVP 231
G+ L +KGVK+AV S +AV +V F LG EK I
Sbjct: 114 GILDLXKNLRQKGVKLAVVSNKPNEAVQVLVEELFPGSFDFALG----EKSGI------- 162
Query: 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAK 268
R+KP P + LGV CV + DS I + A+
Sbjct: 163 RRKPAPDXTSECVKVLGVPRDKCVYIGDSEIDIQTAR 199
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 15/214 (7%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKT 138
A+LFD DGVL D+ + H S++ K G++ + + Y + G + N
Sbjct: 25 AVLFDXDGVLFDSXPN-HAESWHKIXKRFGFGLSRE-EAYXHEGRTG------ASTINIV 76
Query: 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVC 198
E+ EE I ++++ KTE F + + PG +++ + +G+ V
Sbjct: 77 SRRERGHDATEEE---IKAIYQAKTEEFNKCPKAER---XPGALEVLTKIKSEGLTPXVV 130
Query: 199 STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE 258
+ S + ++ ++ + + A DV KP+P Y A G P+ +V+E
Sbjct: 131 TGSGQTSLLDRLNHNFPGIFQANLXVTAFDV-KYGKPNPEPYLXALKKGGFKPNEALVIE 189
Query: 259 DSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
++ +G+ A AAG+ I + + LN A
Sbjct: 190 NAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGA 223
>pdb|2HSZ|A Chain A, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
pdb|2HSZ|B Chain B, Crystal Structure Of A Predicted Phosphoglycolate
Phosphatase (hs_0176) From Haemophilus Somnus 129pt At
1.90 A Resolution
Length = 243
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 32/230 (13%)
Query: 82 FDCDGVLVDTEKDGHRISFNDTFKE-------KELGVTWDVDLYGELLKIGGGKERMTAY 134
FD DG LV++ D +S N K+ + L TW IG G + ++
Sbjct: 28 FDLDGTLVNSLPD-LALSINSALKDVNLPQASENLVXTW----------IGNGADVLSQ- 75
Query: 135 FNKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVK 194
W K E +F KR+ + + L P V + ++ +G
Sbjct: 76 -RAVDWACKQAEKELTEDEF--KYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYI 132
Query: 195 VAVCSTSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253
+AV + K V I++ F + +E + G +P KP PA + G+ P
Sbjct: 133 LAVVTNKPTKHVQPILTAFGIDHLFSEXL---GGQSLPEIKPHPAPFYYLCGKFGLYPKQ 189
Query: 254 CVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNA----DAVFDCIGD 299
+ V DS + AA +AG C V +Y + A D +FD D
Sbjct: 190 ILFVGDSQNDIFAAHSAG--CAVVGLTYGYNYNIPIAQSKPDWIFDDFAD 237
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK---ERMTAYF 135
A+LFD DGVL ++ H +++ K T +DL E + G+ + F
Sbjct: 26 AVLFDMDGVLFNSMPY-HSEAWHQVMK------THGLDLSREEAYMHAGRTGASTINIVF 78
Query: 136 NKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKV 195
+ +E ++ I S++ K+ LF E + +P G +L+ + +G+
Sbjct: 79 QRE-------LGKEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTP 128
Query: 196 AVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255
V + S + ++ + +++ + A DV KP+P Y +A G+ V
Sbjct: 129 MVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAV 187
Query: 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
V+E++ +G+ A AG+ I + + L+A A
Sbjct: 188 VIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDST 261
R KP P +YT AA LG+ P CVV+EDS
Sbjct: 166 RGKPHPDLYTFAAQQLGILPERCVVIEDSV 195
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK---ERMTAYF 135
A+LFD DGVL ++ H +++ K T +DL E + G+ + F
Sbjct: 26 AVLFDMDGVLFNS-MPYHSEAWHQVMK------THGLDLSREEAYMHNGRTGASTINIVF 78
Query: 136 NKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKV 195
+ +E ++ I S++ K+ LF E + +P G +L+ + +G+
Sbjct: 79 QRE-------LGKEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTP 128
Query: 196 AVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255
V + S + ++ + +++ + A DV KP+P Y +A G+ V
Sbjct: 129 MVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAV 187
Query: 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
V+E++ +G+ A AG+ I + + L+A A
Sbjct: 188 VIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 191 KGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD 250
+G+K+A+ S + +++ A+VS R + + D V KPD +Y LA LG+D
Sbjct: 110 RGLKLAILSNGSPQSIDAVVSH--AGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLD 167
Query: 251 PSSCVVVEDSTIGLAAAKAAGM-KCIVTKSSYTAEE 285
S+ + V + A+ G C + ++ EE
Sbjct: 168 RSAILFVSSNAWDATGARYFGFPTCWINRTGNVFEE 203
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK---ERMTAYF 135
A+LFD DGVL ++ H +++ K T +DL E + G+ + F
Sbjct: 26 AVLFDMDGVLFNS-MPYHSEAWHQVMK------THGLDLSREEAYMHDGRTGASTINIVF 78
Query: 136 NKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKV 195
+ +E ++ I S++ K+ LF E + +P G +L+ + +G+
Sbjct: 79 QRE-------LGKEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTP 128
Query: 196 AVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255
V + S + ++ + +++ + A DV KP+P Y +A G+ V
Sbjct: 129 MVVTGSGQLSLLERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAV 187
Query: 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
V+E++ +G+ A AG+ I + + L+A A
Sbjct: 188 VIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 191 KGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD 250
+G+K+A+ S + +++ A+VS R + + D V KPD +Y LA LG+D
Sbjct: 110 RGLKLAILSNGSPQSIDAVVSH--AGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLD 167
Query: 251 PSSCVVVEDSTIGLAAAKAAGM-KCIVTKSSYTAEE 285
S+ + V + A+ G C + ++ EE
Sbjct: 168 RSAILFVASNAWDATGARYFGFPTCWINRTGNVFEE 203
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK---ERMTAYF 135
A+LFD DGVL ++ H +++ K T +DL E + G+ + F
Sbjct: 26 AVLFDMDGVLFNS-MPYHSEAWHQVMK------THGLDLSREEAYMHEGRTGASTINIVF 78
Query: 136 NKTGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKV 195
+ +E ++ I S++ K+ LF E + + PG +L+ + +G+
Sbjct: 79 QRE-------LGKEATQEEIESIYHEKSILFNSYPEAERM---PGAWELLQKVKSEGLTP 128
Query: 196 AVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255
V + S + ++ + +++ + A D V KP+P Y +A G+ V
Sbjct: 129 MVVTGSGQLSLLERLEHNFPGMFHKELMVTAFD-VKYGKPNPEPYLMALKKGGLKADEAV 187
Query: 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
V+E++ +G+ A AG+ I + + L+A A
Sbjct: 188 VIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVV 230
K L P A+ +++ G VA+ S N++ + A L + +++ + D +
Sbjct: 102 KELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAA----LKASKLDRVLDSCLSADDL 157
Query: 231 PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNA 290
KPDP IY A LGV+P+ V + L A G +
Sbjct: 158 KIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQ---------- 207
Query: 291 DAVFDCIGDPPEERF 305
G+PPE F
Sbjct: 208 -------GNPPEYEF 215
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 23/135 (17%)
Query: 173 KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVV 230
K L P A+ +++ G VA+ S N++ + A L + +++ + D +
Sbjct: 102 KELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAA----LKASKLDRVLDSCLSADDL 157
Query: 231 PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNA 290
KPDP IY A LGV+P+ V + L A G +
Sbjct: 158 KIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQ---------- 207
Query: 291 DAVFDCIGDPPEERF 305
G+PPE F
Sbjct: 208 -------GNPPEYEF 215
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG--PERAEKIQIFAGDVVPRKK 234
L P + ++G+++ + ST K I+SFL P+ I I G+ V K
Sbjct: 90 LFPDTLPTLTHLKKQGIRIGIIST---KYRFRILSFLRNHXPDDWFDI-IIGGEDVTHHK 145
Query: 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF 287
PDP LA L P + + DST+ A AAG+ S T ++F
Sbjct: 146 PDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGXTTAQEF 198
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 148 EEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207
+E ++ I S++ K+ LF E + +P G +L+ + +G+ V + S + ++
Sbjct: 84 KEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTPMVVTGSGQLSLL 140
Query: 208 AIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAA 267
+ +++ + A DV KP+P Y +A G+ VV+E++ +G+ A
Sbjct: 141 ERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAG 199
Query: 268 KAAGMKCIVTKSSYTAEEDFLNADA 292
AG+ I + + L+A A
Sbjct: 200 HKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 148 EEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207
+E ++ I S++ K+ LF E + +P G +L+ + +G+ V + S + ++
Sbjct: 84 KEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTPMVVTGSGQLSLL 140
Query: 208 AIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAA 267
+ +++ + A DV KP+P Y +A G+ VV+E++ +G+ A
Sbjct: 141 ERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAG 199
Query: 268 KAAGMKCIVTKSSYTAEEDFLNADA 292
AG+ I + + L+A A
Sbjct: 200 HKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 148 EEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207
+E ++ I S++ K+ LF E + +P G +L+ + +G+ V + S + ++
Sbjct: 84 KEATQEEIESIYHEKSILFNSYPEAERMP---GAWELLQKVKSEGLTPMVVTGSGQLSLL 140
Query: 208 AIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAA 267
+ +++ + A DV KP+P Y +A G+ VV+E++ +G+ A
Sbjct: 141 ERLEHNFPGMFHKELMVTAFDV-KYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAG 199
Query: 268 KAAGMKCIVTKSSYTAEEDFLNADA 292
AG+ I + + L+A A
Sbjct: 200 HKAGIFTIAVNTGPLDGQVLLDAGA 224
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283
KP+P IY TL PS V ++D L A+ GM I+ + + TA
Sbjct: 160 KPEPQIYKFLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDTDTA 209
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 142 EKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTS 201
E S +E+ + ++ H + E ++ +++ L PG +L++ ++ +K C +
Sbjct: 62 ETGXSITDEQAERLSEKHAQAYER----LQHQIIAL-PGAVELLETLDKENLKW--CIAT 114
Query: 202 NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST 261
+ TA ++ KI I D V KPDP ++ AA +G C+V+ D+
Sbjct: 115 SGGIDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAI 174
Query: 262 IGLAAAK 268
AA+
Sbjct: 175 WDXLAAR 181
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 170 IEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF 225
+ ++LP+ G I+ A+E G+K+ + SNEK V L ++AEKIQIF
Sbjct: 516 VRGEVLPI-GGATPAIEAAIEAGIKMVIIPKSNEKDV------FLSKDKAEKIQIF 564
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 222 IQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCI 275
+ F + KP+PA Y L + V P V V+D + AA+A G +
Sbjct: 129 LAFFTSSALGVXKPNPAXYRLGLTLAQVRPEEAVXVDDRLQNVQAARAVGXHAV 182
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283
KP+P IY TL P+ V ++D L A+ GM I+ ++ +A
Sbjct: 160 KPEPQIYNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILVHNTASA 209
>pdb|4DFD|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DFD|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Magnesium
Complex
pdb|4DCC|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 From
Bacteroides Thetaiotaomicron (Target Efi-501088)
pdb|4F71|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
pdb|4F71|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Wild-Type
Protein, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYT--AEEDF 287
KP+P I+ G+DP ++DS I A+ G+ S+YT A ED+
Sbjct: 173 KPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI------STYTPKAGEDW 222
>pdb|4F72|A Chain A, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
pdb|4F72|B Chain B, Crystal Structure Of Had Family Enzyme Bt-2542 (Target
Efi-501088) From Bacteroides Thetaiotaomicron, Asp12ala
Mutant, Complex With Magnesium And Inorganic Phosphate
Length = 229
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYT--AEEDF 287
KP+P I+ G+DP ++DS I A+ G+ S+YT A ED+
Sbjct: 173 KPEPEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGI------STYTPKAGEDW 222
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 224 IFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283
IF+ + V KP P +Y ++G +V + + AK AGM+ I
Sbjct: 118 IFSAESVKEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGMRSI-------- 167
Query: 284 EEDFLN-ADAVFDCIGDPPE 302
F+N + + D IG P+
Sbjct: 168 ---FVNRKNTIVDPIGGKPD 184
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 14/80 (17%)
Query: 224 IFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283
IF+ + V KP P +Y ++G +V + + AK AGM+ I
Sbjct: 123 IFSAESVKEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGMRSI-------- 172
Query: 284 EEDFLN-ADAVFDCIGDPPE 302
F+N + + D IG P+
Sbjct: 173 ---FVNRKNTIVDPIGGKPD 189
>pdb|2W4M|A Chain A, The Crystal Structure Of Human N-Acetylneuraminic Acid
Phosphatase, Nanp
Length = 270
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 224 IFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIV 276
+ G +KP P+I+ + LGV P CV+V D+ + AG+K V
Sbjct: 176 VVVGGEQREEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATV 229
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 224 IFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKC 274
I D+ + KPDP Y A LG+ P ++ L AA A G+
Sbjct: 159 IIGSDINRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGLAT 209
>pdb|3UMC|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|B Chain B, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|C Chain C, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|D Chain D, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
Length = 254
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 44/214 (20%)
Query: 79 ALLFDCDGVLVDTEKDGHRISFNDTFK--EKELGVTWD----VDLYGELLKIGGGKERMT 132
A+LFD G LVD R S + F+ E+ELG T D + + K + R
Sbjct: 24 AILFDVFGTLVDW-----RSSLIEQFQALERELGGTLPCVELTDRWRQQYKPAXDRVRNG 78
Query: 133 AYFNKTGWPEKAPSDEEERKQFIASLHKRKTEL----FMVLIEKKLLP--------LRPG 180
+AP Q + LH++ E F + +++ LL LRP
Sbjct: 79 ----------QAPW------QHLDQLHRQSLEALAGEFGLALDEALLQRITGFWHRLRPW 122
Query: 181 VAKLID-QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAI 239
L AL+ +A S N + P + D+ KPDP +
Sbjct: 123 PDTLAGXHALKADYWLAALSNGNTALXLDVARHAGLPWDX----LLCADLFGHYKPDPQV 178
Query: 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMK 273
Y A L + P + L AA+A G+K
Sbjct: 179 YLGACRLLDLPPQEVXLCAAHNYDLKAARALGLK 212
>pdb|2GFH|A Chain A, Crystal Structure Of A N-acetylneuraminic Acid Phosphatase
(nanp) From Mus Musculus At 1.90 A Resolution
Length = 260
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 224 IFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIV 276
I G +KP P+I+ LGV P CV+V D+ + AG+K V
Sbjct: 166 IVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATV 219
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV-TAIVSFLLGPERAEKIQIFAGDVVPRKKP 235
L PG+ L +Q L +++ + ++ + + S+ A I + D P++KP
Sbjct: 84 LYPGITSLFEQ-LPSELRLGIVTSQRRNELESGXRSYPFXXRXAVTI---SADDTPKRKP 139
Query: 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGM 272
DP A + V P + + + DS A+AA +
Sbjct: 140 DPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANV 176
>pdb|2X9Z|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 262
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 99 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 139
>pdb|3DX9|A Chain A, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|C Chain C, Crystal Structure Of The Dm1 Tcr At 2.75a
Length = 198
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVE-DSTIGLAAAKAAGM----KCIVTKSS--- 280
V+P + PDPA+Y L S D S C+ + DS ++ +K + + KC++ S
Sbjct: 106 VIPIQNPDPAVYQLRDSK-SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDF 164
Query: 281 -------YTAEEDFLNADAVFDCIGDPPEERF 305
++ + DF A+A + I PE+ F
Sbjct: 165 KSNSAVAWSNKSDFACANAFNNSI--IPEDTF 194
>pdb|3DXA|D Chain D, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|I Chain I, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|N Chain N, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 199
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVE-DSTIGLAAAKAAGM----KCIVTKSS--- 280
V+P + PDPA+Y L S D S C+ + DS ++ +K + + KC++ S
Sbjct: 106 VIPIQNPDPAVYQLRDSK-SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDF 164
Query: 281 -------YTAEEDFLNADAVFDCIGDPPEERF 305
++ + DF A+A + I PE+ F
Sbjct: 165 KSNSAVAWSNKSDFACANAFNNSI--IPEDTF 194
>pdb|2X9Y|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|2X9W|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
pdb|2X9X|A Chain A, Structure Of The Pilus Backbone (Rrgb) From Streptococcus
Pneumoniae
Length = 444
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 102 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 142
>pdb|3RPK|A Chain A, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
pdb|3RPK|B Chain B, Structure Of The Full-Length Major Pilin Rrgb From
Streptococcus Pneumoniae
Length = 603
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 260 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 300
>pdb|2Y1V|A Chain A, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|B Chain B, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
pdb|2Y1V|C Chain C, Full Length Structure Of Rrgb Pilus Protein From
Streptococcus Pneumoniae
Length = 605
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAI-----VSFLLG 215
G+AK+ DQ EK VK+ +T N+KA+ + V+F G
Sbjct: 257 GLAKVNDQNAEKTVKITYSATLNDKAIVEVPESNDVTFNYG 297
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIG-LAAAKAAGMKCIVTKSSYTAEEDFLNADA 292
KP P + A +GV+ V++ D +G + A+ GM+ + ++ D + +
Sbjct: 190 KPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHHPEV 249
Query: 293 VFDCIGDPPEERFDL 307
D D E DL
Sbjct: 250 KADGYVDNLAEAVDL 264
>pdb|3M9L|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5
pdb|2YBD|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Phosphate
pdb|3R09|A Chain A, Crystal Structure Of Probable Had Family Hydrolase From
Pseudomonas Fluorescens Pf-5 With Bound Mg
Length = 205
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 179 PGVAKLIDQALEKGVKVAVCS-TSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237
PG +L+ + +G ++ + + + E A + + L AE + D P KP P
Sbjct: 73 PGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEA-DVLGRDEAP-PKPHP 130
Query: 238 AIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278
A V PS V V D L +AAG + ++
Sbjct: 131 GGLLKLAEAWDVSPSRXVXVGDYRFDLDCGRAAGTRTVLVN 171
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV 230
+L + PG + + LEK KV C + + V + + G A K+Q+ GDV+
Sbjct: 32 VLEVGPGTGNMTVKLLEKAKKVVACEL-DPRLVAELHKRVQGTPVASKLQVLVGDVL 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,101
Number of Sequences: 62578
Number of extensions: 320272
Number of successful extensions: 985
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 67
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)