Query 020874
Match_columns 320
No_of_seqs 188 out of 1450
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 100.0 1.9E-37 4.1E-42 273.2 24.6 242 75-317 38-285 (286)
2 COG0546 Gph Predicted phosphat 100.0 5.9E-32 1.3E-36 230.0 23.0 215 75-305 2-218 (220)
3 PLN02575 haloacid dehalogenase 100.0 2.2E-32 4.8E-37 245.2 21.2 217 76-309 130-346 (381)
4 PRK13226 phosphoglycolate phos 100.0 9.7E-32 2.1E-36 230.3 21.7 212 74-303 9-223 (229)
5 PLN03243 haloacid dehalogenase 100.0 5E-32 1.1E-36 235.1 19.8 216 76-308 23-238 (260)
6 PLN02770 haloacid dehalogenase 100.0 1E-31 2.2E-36 232.7 21.7 210 75-301 20-232 (248)
7 PRK13288 pyrophosphatase PpaX; 100.0 8.7E-32 1.9E-36 228.5 20.8 209 76-306 2-212 (214)
8 TIGR01422 phosphonatase phosph 100.0 6E-31 1.3E-35 229.0 23.6 213 77-304 2-252 (253)
9 PRK13478 phosphonoacetaldehyde 100.0 8.5E-31 1.8E-35 229.7 23.4 217 74-305 1-255 (267)
10 TIGR03351 PhnX-like phosphonat 100.0 1.4E-30 3.1E-35 222.0 22.0 211 77-303 1-218 (220)
11 TIGR01449 PGP_bact 2-phosphogl 100.0 9.9E-31 2.2E-35 221.8 19.5 208 80-302 1-211 (213)
12 PRK11587 putative phosphatase; 100.0 2.3E-30 5E-35 220.3 20.2 204 76-302 2-205 (218)
13 PRK10826 2-deoxyglucose-6-phos 100.0 5.9E-30 1.3E-34 218.4 20.0 212 75-303 5-218 (222)
14 TIGR01454 AHBA_synth_RP 3-amin 100.0 8.4E-30 1.8E-34 214.9 18.9 200 80-304 1-203 (205)
15 PRK13223 phosphoglycolate phos 100.0 1.6E-29 3.5E-34 221.5 20.5 218 75-305 11-230 (272)
16 PRK13225 phosphoglycolate phos 100.0 1.3E-29 2.9E-34 221.2 19.9 210 75-308 60-271 (273)
17 TIGR02253 CTE7 HAD superfamily 100.0 5.3E-29 1.1E-33 212.5 22.2 124 175-300 93-220 (221)
18 COG0637 Predicted phosphatase/ 100.0 1.5E-29 3.2E-34 214.9 17.8 190 76-282 1-190 (221)
19 PRK13222 phosphoglycolate phos 100.0 9.8E-29 2.1E-33 211.5 21.3 217 75-306 4-223 (226)
20 PLN02940 riboflavin kinase 100.0 6.2E-29 1.3E-33 227.1 20.1 210 75-304 9-220 (382)
21 PRK09449 dUMP phosphatase; Pro 100.0 1.3E-28 2.8E-33 210.5 20.7 212 76-305 2-223 (224)
22 PRK10563 6-phosphogluconate ph 100.0 1.1E-28 2.4E-33 210.4 18.4 209 75-303 2-211 (221)
23 TIGR02254 YjjG/YfnB HAD superf 100.0 8.3E-28 1.8E-32 205.4 21.1 211 77-303 1-223 (224)
24 PRK06698 bifunctional 5'-methy 100.0 7.1E-28 1.5E-32 226.3 21.0 214 74-306 238-455 (459)
25 TIGR01990 bPGM beta-phosphoglu 100.0 2.1E-27 4.5E-32 196.9 19.4 184 79-278 1-185 (185)
26 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 4E-27 8.6E-32 195.3 19.9 184 77-277 1-185 (185)
27 TIGR01428 HAD_type_II 2-haloal 100.0 1.5E-27 3.2E-32 200.1 17.2 106 175-282 91-196 (198)
28 PRK14988 GMP/IMP nucleotidase; 100.0 1.5E-27 3.2E-32 203.4 16.3 129 175-307 92-221 (224)
29 PRK10725 fructose-1-P/6-phosph 100.0 1.5E-26 3.3E-31 192.3 20.3 183 75-278 3-186 (188)
30 PRK10748 flavin mononucleotide 100.0 1.3E-26 2.8E-31 199.6 19.5 122 175-304 112-238 (238)
31 TIGR02252 DREG-2 REG-2-like, H 99.9 3.5E-26 7.6E-31 192.5 19.3 183 78-276 1-203 (203)
32 PLN02919 haloacid dehalogenase 99.9 1.3E-25 2.8E-30 227.6 25.1 211 75-302 73-287 (1057)
33 COG1011 Predicted hydrolase (H 99.9 1.1E-25 2.4E-30 192.9 18.2 128 175-305 98-227 (229)
34 PLN02811 hydrolase 99.9 3E-25 6.6E-30 189.0 19.5 203 84-304 1-210 (220)
35 PF13419 HAD_2: Haloacid dehal 99.9 1.9E-25 4.1E-30 182.9 16.2 174 80-277 1-176 (176)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 2.5E-25 5.4E-30 188.4 14.3 106 174-281 92-199 (211)
37 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.3E-24 2.9E-29 180.0 15.6 98 175-277 83-184 (184)
38 KOG2914 Predicted haloacid-hal 99.9 9.2E-24 2E-28 176.1 18.4 207 75-301 8-219 (222)
39 PHA02597 30.2 hypothetical pro 99.9 3E-24 6.4E-29 179.9 15.1 190 76-301 1-195 (197)
40 PRK09456 ?-D-glucose-1-phospha 99.9 8.7E-24 1.9E-28 177.3 16.7 107 175-283 83-190 (199)
41 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 1.5E-23 3.3E-28 175.5 17.6 185 79-270 2-197 (197)
42 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 2E-23 4.4E-28 172.5 16.8 100 175-277 84-183 (183)
43 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 5.3E-23 1.2E-27 165.4 15.6 154 79-271 1-154 (154)
44 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1.4E-22 3E-27 166.5 14.9 123 175-301 25-175 (176)
45 TIGR00338 serB phosphoserine p 99.9 4E-22 8.6E-27 169.8 18.1 120 175-298 84-211 (219)
46 PRK06769 hypothetical protein; 99.9 1.1E-22 2.5E-27 166.2 13.0 129 175-305 27-172 (173)
47 PRK08942 D,D-heptose 1,7-bisph 99.9 1.8E-22 3.9E-27 166.7 14.2 127 175-305 28-177 (181)
48 PLN02954 phosphoserine phospha 99.9 5.4E-22 1.2E-26 169.5 16.8 199 75-303 10-222 (224)
49 KOG3085 Predicted hydrolase (H 99.9 9.2E-22 2E-26 164.6 14.8 204 75-287 5-222 (237)
50 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 7.4E-23 1.6E-27 168.1 6.8 87 175-270 89-175 (175)
51 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 7.2E-21 1.6E-25 159.7 18.0 103 175-279 79-191 (201)
52 TIGR01691 enolase-ppase 2,3-di 99.9 5E-21 1.1E-25 161.4 16.8 122 175-300 94-220 (220)
53 TIGR01656 Histidinol-ppas hist 99.9 1.3E-21 2.9E-26 155.8 11.4 106 175-280 26-147 (147)
54 PRK11133 serB phosphoserine ph 99.9 1.1E-20 2.4E-25 168.2 16.0 123 175-302 180-310 (322)
55 TIGR01685 MDP-1 magnesium-depe 99.8 3.8E-21 8.2E-26 155.7 7.4 107 175-283 44-162 (174)
56 PRK09552 mtnX 2-hydroxy-3-keto 99.8 2.3E-20 5E-25 158.8 12.3 129 175-307 73-215 (219)
57 PRK13582 thrH phosphoserine ph 99.8 9.8E-20 2.1E-24 153.4 15.7 131 175-309 67-200 (205)
58 TIGR01672 AphA HAD superfamily 99.8 1.4E-19 3E-24 153.8 16.1 102 175-285 113-218 (237)
59 TIGR01662 HAD-SF-IIIA HAD-supe 99.8 7.5E-20 1.6E-24 143.2 13.3 98 175-278 24-131 (132)
60 TIGR01261 hisB_Nterm histidino 99.8 8.1E-20 1.8E-24 147.0 12.5 107 175-284 28-153 (161)
61 TIGR01452 PGP_euk phosphoglyco 99.8 2.2E-19 4.7E-24 158.2 10.4 123 177-300 144-279 (279)
62 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 8.1E-19 1.8E-23 142.1 12.3 96 177-276 43-160 (166)
63 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 4.8E-19 1.1E-23 153.9 8.4 127 177-305 121-255 (257)
64 KOG3109 Haloacid dehalogenase- 99.8 9.9E-18 2.1E-22 135.5 14.9 118 175-300 99-223 (244)
65 TIGR01668 YqeG_hyp_ppase HAD s 99.8 6.2E-18 1.3E-22 137.8 13.7 101 176-287 43-145 (170)
66 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2.5E-17 5.4E-22 136.7 15.6 95 175-274 71-185 (188)
67 cd01427 HAD_like Haloacid deha 99.8 1.3E-17 2.9E-22 130.4 11.9 101 175-277 23-139 (139)
68 TIGR03333 salvage_mtnX 2-hydro 99.7 1.3E-17 2.8E-22 141.4 12.0 129 175-306 69-210 (214)
69 TIGR02137 HSK-PSP phosphoserin 99.7 8.8E-17 1.9E-21 134.4 15.2 123 175-306 67-197 (203)
70 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 1.3E-16 2.9E-21 134.0 14.8 103 175-277 86-197 (202)
71 TIGR01670 YrbI-phosphatas 3-de 99.7 2.5E-17 5.5E-22 132.0 9.4 111 184-308 36-149 (154)
72 TIGR02726 phenyl_P_delta pheny 99.7 1.4E-17 3E-22 134.6 6.9 113 184-310 42-156 (169)
73 PRK05446 imidazole glycerol-ph 99.7 1.5E-16 3.2E-21 142.6 13.9 103 175-281 29-151 (354)
74 PRK11009 aphA acid phosphatase 99.7 2.7E-16 5.8E-21 133.6 14.3 100 175-285 113-218 (237)
75 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 7E-17 1.5E-21 139.8 9.4 120 177-300 122-249 (249)
76 PHA02530 pseT polynucleotide k 99.7 3E-16 6.5E-21 140.0 13.0 105 175-281 186-299 (300)
77 PLN02645 phosphoglycolate phos 99.7 6.1E-17 1.3E-21 144.7 8.5 123 181-305 175-308 (311)
78 COG0560 SerB Phosphoserine pho 99.7 1.2E-15 2.6E-20 128.2 15.1 102 175-276 76-185 (212)
79 COG2179 Predicted hydrolase of 99.7 7E-16 1.5E-20 120.0 11.4 91 179-280 49-140 (175)
80 TIGR01488 HAD-SF-IB Haloacid D 99.7 2.2E-15 4.7E-20 123.8 15.0 96 175-270 72-177 (177)
81 PF00702 Hydrolase: haloacid d 99.7 1.1E-15 2.4E-20 129.4 13.4 90 175-271 126-215 (215)
82 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 4.7E-16 1E-20 120.6 9.9 87 177-269 30-126 (128)
83 PRK10530 pyridoxal phosphate ( 99.7 3.5E-15 7.5E-20 131.2 15.4 126 177-307 138-270 (272)
84 PRK10444 UMP phosphatase; Prov 99.6 4.3E-15 9.3E-20 128.2 13.3 71 230-300 170-245 (248)
85 PRK09484 3-deoxy-D-manno-octul 99.6 3.9E-16 8.4E-21 128.8 5.3 98 184-295 56-153 (183)
86 COG0647 NagD Predicted sugar p 99.6 1.3E-14 2.9E-19 124.7 13.3 75 232-306 188-267 (269)
87 KOG1615 Phosphoserine phosphat 99.6 1.7E-14 3.6E-19 114.7 9.2 194 76-299 15-220 (227)
88 PRK11590 hypothetical protein; 99.6 5.6E-13 1.2E-17 112.7 18.8 181 77-276 6-201 (211)
89 PF13242 Hydrolase_like: HAD-h 99.5 1.1E-14 2.3E-19 102.0 6.1 69 232-300 2-75 (75)
90 PRK08238 hypothetical protein; 99.5 4.1E-13 8.8E-18 125.7 18.2 122 175-305 71-192 (479)
91 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.5 3.1E-14 6.8E-19 122.9 9.9 100 178-278 140-241 (242)
92 TIGR01686 FkbH FkbH-like domai 99.5 4.8E-14 1E-18 126.6 11.0 91 176-273 31-125 (320)
93 COG0241 HisB Histidinol phosph 99.5 2.7E-13 5.9E-18 109.3 13.6 123 175-301 30-173 (181)
94 PRK01158 phosphoglycolate phos 99.5 2.6E-13 5.7E-18 116.3 12.6 105 195-307 118-228 (230)
95 smart00577 CPDc catalytic doma 99.5 3.6E-14 7.8E-19 113.0 6.5 95 175-275 44-139 (148)
96 TIGR01663 PNK-3'Pase polynucle 99.5 2.1E-13 4.6E-18 128.1 12.5 92 177-272 198-305 (526)
97 TIGR01544 HAD-SF-IE haloacid d 99.5 1.3E-12 2.9E-17 112.8 16.5 102 167-270 112-230 (277)
98 PF12689 Acid_PPase: Acid Phos 99.5 1.8E-13 3.9E-18 109.8 9.0 102 175-283 44-156 (169)
99 PF06888 Put_Phosphatase: Puta 99.5 2.3E-12 4.9E-17 109.0 15.2 110 175-286 70-205 (234)
100 TIGR01482 SPP-subfamily Sucros 99.4 1.6E-13 3.5E-18 117.2 7.1 101 195-299 110-210 (225)
101 COG4229 Predicted enolase-phos 99.4 7.5E-12 1.6E-16 98.6 14.5 130 165-298 90-224 (229)
102 PRK10513 sugar phosphate phosp 99.4 9.6E-12 2.1E-16 109.3 16.0 78 228-308 189-268 (270)
103 PLN02887 hydrolase family prot 99.4 2.5E-11 5.4E-16 115.8 17.4 78 228-308 500-579 (580)
104 PRK15126 thiamin pyrimidine py 99.4 3E-11 6.5E-16 106.2 15.5 79 228-309 181-263 (272)
105 TIGR01487 SPP-like sucrose-pho 99.3 8.1E-12 1.8E-16 106.0 11.0 100 194-299 109-208 (215)
106 PRK10976 putative hydrolase; P 99.3 7.8E-12 1.7E-16 109.6 10.7 78 228-308 183-264 (266)
107 TIGR01545 YfhB_g-proteo haloac 99.3 2.7E-10 5.9E-15 96.0 19.0 98 175-276 93-200 (210)
108 TIGR01456 CECR5 HAD-superfamil 99.3 4.3E-11 9.2E-16 107.5 14.6 74 232-305 231-321 (321)
109 PTZ00445 p36-lilke protein; Pr 99.3 2.9E-11 6.3E-16 98.9 11.9 102 176-279 75-206 (219)
110 PRK00192 mannosyl-3-phosphogly 99.3 1.1E-10 2.4E-15 102.7 16.6 56 228-287 184-240 (273)
111 PF09419 PGP_phosphatase: Mito 99.3 4.2E-11 9E-16 95.8 11.5 91 178-280 61-166 (168)
112 TIGR01460 HAD-SF-IIA Haloacid 99.3 2.4E-11 5.3E-16 104.4 10.3 49 232-280 186-236 (236)
113 KOG2882 p-Nitrophenyl phosphat 99.2 7.3E-11 1.6E-15 100.9 11.5 73 232-304 222-303 (306)
114 COG0561 Cof Predicted hydrolas 99.2 7.3E-11 1.6E-15 103.3 11.6 77 229-308 183-261 (264)
115 KOG3040 Predicted sugar phosph 99.2 2.7E-12 5.9E-17 103.3 1.9 76 232-307 179-259 (262)
116 TIGR00099 Cof-subfamily Cof su 99.2 7.7E-10 1.7E-14 96.4 16.0 68 229-299 182-249 (256)
117 TIGR01533 lipo_e_P4 5'-nucleot 99.2 3.7E-10 8E-15 97.6 13.5 85 175-267 117-204 (266)
118 COG1778 Low specificity phosph 99.2 9.6E-12 2.1E-16 95.9 3.1 98 185-296 44-141 (170)
119 PF08645 PNK3P: Polynucleotide 99.2 1.3E-10 2.8E-15 93.3 9.1 94 178-275 31-153 (159)
120 COG4359 Uncharacterized conser 99.2 1.3E-09 2.9E-14 86.2 13.8 129 175-310 72-217 (220)
121 PF12710 HAD: haloacid dehalog 99.2 3.1E-10 6.6E-15 94.3 11.0 89 179-268 92-192 (192)
122 KOG3120 Predicted haloacid deh 99.1 1E-09 2.2E-14 89.5 12.2 109 175-285 83-217 (256)
123 PRK03669 mannosyl-3-phosphogly 99.1 5.5E-09 1.2E-13 91.8 17.6 68 228-298 180-256 (271)
124 TIGR01525 ATPase-IB_hvy heavy 99.1 2.2E-10 4.9E-15 110.5 9.3 113 175-303 383-498 (556)
125 TIGR01512 ATPase-IB2_Cd heavy 99.1 2.6E-10 5.7E-15 109.4 8.8 114 175-304 361-478 (536)
126 TIGR02463 MPGP_rel mannosyl-3- 99.0 6.3E-09 1.4E-13 88.6 14.5 45 231-275 175-219 (221)
127 TIGR01684 viral_ppase viral ph 99.0 1E-09 2.3E-14 94.6 9.5 59 179-239 149-207 (301)
128 TIGR02471 sucr_syn_bact_C sucr 99.0 2.6E-09 5.6E-14 91.9 10.6 66 228-296 152-221 (236)
129 PF08282 Hydrolase_3: haloacid 99.0 4E-09 8.7E-14 91.1 11.7 66 231-299 182-247 (254)
130 TIGR01511 ATPase-IB1_Cu copper 99.0 1.1E-09 2.4E-14 105.6 8.3 113 175-304 404-518 (562)
131 TIGR02244 HAD-IG-Ncltidse HAD 99.0 5.8E-09 1.3E-13 93.2 11.7 103 175-279 183-324 (343)
132 TIGR01486 HAD-SF-IIB-MPGP mann 99.0 2.9E-08 6.2E-13 86.5 15.6 67 229-298 170-244 (256)
133 TIGR01485 SPP_plant-cyano sucr 98.9 4E-08 8.6E-13 85.3 15.2 51 228-278 160-210 (249)
134 TIGR02251 HIF-SF_euk Dullard-l 98.9 1.1E-09 2.3E-14 88.4 3.1 98 175-278 41-139 (162)
135 COG4087 Soluble P-type ATPase 98.9 1.2E-08 2.6E-13 76.3 8.1 121 175-307 29-149 (152)
136 TIGR01522 ATPase-IIA2_Ca golgi 98.9 6.8E-09 1.5E-13 105.2 9.2 125 176-305 528-671 (884)
137 PRK10671 copA copper exporting 98.9 8.2E-09 1.8E-13 104.2 9.3 115 175-305 649-765 (834)
138 TIGR00685 T6PP trehalose-phosp 98.8 4.7E-09 1E-13 90.8 6.2 81 223-307 151-242 (244)
139 PF06941 NT5C: 5' nucleotidase 98.8 3.1E-08 6.7E-13 82.4 10.5 109 175-306 72-187 (191)
140 PHA03398 viral phosphatase sup 98.8 6.6E-08 1.4E-12 83.7 10.8 81 179-261 151-262 (303)
141 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.7 1.9E-08 4.2E-13 86.8 6.7 90 176-272 24-116 (242)
142 smart00775 LNS2 LNS2 domain. T 98.7 4.7E-07 1E-11 72.6 11.8 95 178-273 29-141 (157)
143 PLN02382 probable sucrose-phos 98.6 4.7E-07 1E-11 83.9 13.2 57 229-288 169-229 (413)
144 PRK11033 zntA zinc/cadmium/mer 98.6 1.8E-07 3.8E-12 93.1 10.6 109 176-302 568-678 (741)
145 PRK14502 bifunctional mannosyl 98.6 7.1E-07 1.5E-11 85.8 14.0 45 232-276 610-656 (694)
146 PRK10187 trehalose-6-phosphate 98.6 6.3E-07 1.4E-11 78.4 11.8 72 230-308 169-244 (266)
147 TIGR02461 osmo_MPG_phos mannos 98.6 1.7E-06 3.6E-11 73.8 13.9 43 233-275 179-223 (225)
148 TIGR01675 plant-AP plant acid 98.5 3.3E-06 7.1E-11 71.3 13.2 95 175-276 119-220 (229)
149 TIGR01116 ATPase-IIA1_Ca sarco 98.5 6.8E-07 1.5E-11 91.1 9.5 126 176-304 537-682 (917)
150 COG4996 Predicted phosphatase 98.4 5.7E-07 1.2E-11 67.3 5.9 83 175-263 40-128 (164)
151 PF13344 Hydrolase_6: Haloacid 98.4 4E-06 8.8E-11 61.9 10.2 83 177-272 15-100 (101)
152 PRK12702 mannosyl-3-phosphogly 98.4 1.7E-05 3.6E-10 69.1 15.1 44 233-276 206-251 (302)
153 PF05116 S6PP: Sucrose-6F-phos 98.3 5.8E-07 1.3E-11 77.7 5.2 49 230-279 160-208 (247)
154 TIGR01497 kdpB K+-transporting 98.3 2.1E-06 4.5E-11 83.7 9.3 104 176-295 446-549 (675)
155 COG2217 ZntA Cation transport 98.3 1.5E-06 3.3E-11 84.9 7.8 114 175-304 536-651 (713)
156 PF03767 Acid_phosphat_B: HAD 98.3 8.8E-07 1.9E-11 75.5 5.3 90 175-269 114-210 (229)
157 PRK14010 potassium-transportin 98.3 4.4E-06 9.6E-11 81.5 10.2 113 176-304 441-555 (673)
158 TIGR01680 Veg_Stor_Prot vegeta 98.2 2.2E-05 4.7E-10 67.5 12.4 98 175-277 144-248 (275)
159 PF11019 DUF2608: Protein of u 98.2 5E-05 1.1E-09 65.7 14.8 107 176-282 81-213 (252)
160 COG3700 AphA Acid phosphatase 98.2 5.5E-06 1.2E-10 65.6 7.9 97 179-282 117-215 (237)
161 PRK01122 potassium-transportin 98.2 7.1E-06 1.5E-10 80.2 9.8 113 176-304 445-559 (679)
162 TIGR01517 ATPase-IIB_Ca plasma 98.1 6.2E-06 1.3E-10 84.5 8.3 124 176-304 579-721 (941)
163 KOG2630 Enolase-phosphatase E- 98.1 0.00011 2.4E-09 60.9 13.6 122 175-300 122-248 (254)
164 PRK10517 magnesium-transportin 98.1 8.6E-06 1.9E-10 82.8 8.2 122 176-304 550-689 (902)
165 TIGR01523 ATPase-IID_K-Na pota 98.1 1.4E-05 3.1E-10 82.4 9.4 126 176-304 646-798 (1053)
166 PRK15122 magnesium-transportin 98.1 1.1E-05 2.4E-10 82.1 8.5 122 176-304 550-689 (903)
167 TIGR01524 ATPase-IIIB_Mg magne 98.1 1.9E-05 4.2E-10 80.1 10.1 122 176-304 515-654 (867)
168 PLN02177 glycerol-3-phosphate 98.1 0.00058 1.3E-08 64.7 19.2 94 177-276 111-213 (497)
169 PTZ00174 phosphomannomutase; P 98.1 3.8E-05 8.3E-10 66.5 10.3 47 228-278 181-231 (247)
170 TIGR01647 ATPase-IIIA_H plasma 98.0 1.3E-05 2.7E-10 80.3 8.1 120 176-303 442-585 (755)
171 PLN02423 phosphomannomutase 98.0 1.2E-05 2.6E-10 69.5 6.6 47 228-279 182-232 (245)
172 COG2503 Predicted secreted aci 98.0 6E-05 1.3E-09 62.9 10.1 84 175-266 121-208 (274)
173 PLN02645 phosphoglycolate phos 98.0 5.5E-05 1.2E-09 67.8 10.5 90 176-276 44-136 (311)
174 PRK14501 putative bifunctional 98.0 9.5E-05 2.1E-09 74.0 12.5 71 231-307 653-723 (726)
175 KOG0207 Cation transport ATPas 97.9 4.5E-05 9.8E-10 74.7 9.0 113 176-304 723-837 (951)
176 PF08235 LNS2: LNS2 (Lipin/Ned 97.9 0.00021 4.5E-09 56.6 10.6 94 178-273 29-141 (157)
177 PLN02580 trehalose-phosphatase 97.9 0.0002 4.3E-09 65.3 11.4 71 233-308 299-377 (384)
178 TIGR02250 FCP1_euk FCP1-like p 97.8 4.8E-05 1E-09 60.8 6.6 82 175-263 57-139 (156)
179 TIGR01106 ATPase-IIC_X-K sodiu 97.8 6.6E-05 1.4E-09 77.5 8.9 126 176-304 568-736 (997)
180 PLN02205 alpha,alpha-trehalose 97.8 0.00065 1.4E-08 68.6 14.6 72 231-308 758-845 (854)
181 COG0474 MgtA Cation transport 97.7 0.00015 3.3E-09 74.0 9.3 130 175-308 546-691 (917)
182 COG5663 Uncharacterized conser 97.7 0.0017 3.8E-08 51.1 12.7 93 178-285 74-168 (194)
183 KOG2961 Predicted hydrolase (H 97.6 0.0012 2.7E-08 51.1 10.9 36 249-284 137-173 (190)
184 TIGR01689 EcbF-BcbF capsule bi 97.6 0.00025 5.5E-09 54.3 6.5 30 177-206 25-54 (126)
185 TIGR01484 HAD-SF-IIB HAD-super 97.5 0.00011 2.5E-09 61.5 4.1 48 229-276 157-204 (204)
186 COG3882 FkbH Predicted enzyme 97.5 0.00076 1.6E-08 61.9 9.5 88 178-272 257-348 (574)
187 PLN02151 trehalose-phosphatase 97.5 0.00064 1.4E-08 61.3 8.8 72 233-308 267-345 (354)
188 TIGR01652 ATPase-Plipid phosph 97.5 0.00025 5.5E-09 73.8 7.2 127 176-304 631-819 (1057)
189 COG4030 Uncharacterized protei 97.4 0.0081 1.8E-07 49.9 13.9 40 175-215 82-121 (315)
190 PLN03017 trehalose-phosphatase 97.4 0.00026 5.6E-09 64.0 5.6 72 233-308 281-359 (366)
191 TIGR01494 ATPase_P-type ATPase 97.4 0.0012 2.6E-08 63.3 10.5 102 176-302 347-448 (499)
192 KOG0202 Ca2+ transporting ATPa 97.4 0.00062 1.3E-08 66.4 7.9 117 175-294 583-718 (972)
193 PF05761 5_nucleotid: 5' nucle 97.3 0.0011 2.4E-08 61.9 8.8 102 176-279 183-325 (448)
194 KOG3107 Predicted haloacid deh 97.3 0.057 1.2E-06 48.3 18.6 60 214-278 392-451 (468)
195 COG5610 Predicted hydrolase (H 97.3 0.0018 3.9E-08 59.1 9.1 99 177-277 100-201 (635)
196 PLN03190 aminophospholipid tra 97.2 0.0016 3.5E-08 68.0 9.7 52 252-305 872-923 (1178)
197 TIGR01657 P-ATPase-V P-type AT 97.2 0.0037 8E-08 65.2 12.1 41 176-216 656-696 (1054)
198 COG2216 KdpB High-affinity K+ 97.2 0.0011 2.4E-08 61.4 6.8 114 177-308 448-561 (681)
199 TIGR02245 HAD_IIID1 HAD-superf 97.1 0.0069 1.5E-07 50.1 10.5 91 177-272 46-150 (195)
200 COG3769 Predicted hydrolase (H 97.0 0.0015 3.3E-08 54.0 5.6 38 239-276 195-234 (274)
201 KOG0204 Calcium transporting A 97.0 0.0028 6.1E-08 62.1 8.1 114 175-295 646-780 (1034)
202 TIGR01484 HAD-SF-IIB HAD-super 96.9 0.0035 7.5E-08 52.4 7.0 35 179-213 20-54 (204)
203 KOG2470 Similar to IMP-GMP spe 96.7 0.016 3.5E-07 51.2 9.8 99 178-277 242-374 (510)
204 COG1877 OtsB Trehalose-6-phosp 96.7 0.03 6.5E-07 48.6 11.3 58 223-280 166-230 (266)
205 PF05152 DUF705: Protein of un 96.7 0.013 2.9E-07 50.5 8.8 81 179-261 145-256 (297)
206 TIGR01452 PGP_euk phosphoglyco 96.6 0.02 4.3E-07 50.5 10.3 88 176-275 18-108 (279)
207 KOG0210 P-type ATPase [Inorgan 96.3 0.036 7.8E-07 53.5 10.4 52 252-305 782-833 (1051)
208 PF06189 5-nucleotidase: 5'-nu 96.2 0.056 1.2E-06 46.3 10.1 77 192-282 186-262 (264)
209 PF03031 NIF: NLI interacting 96.2 0.0049 1.1E-07 49.4 3.7 84 175-264 35-119 (159)
210 KOG2134 Polynucleotide kinase 96.0 0.023 5E-07 51.1 7.0 99 176-275 104-230 (422)
211 PLN02499 glycerol-3-phosphate 96.0 0.079 1.7E-06 49.8 10.5 88 184-277 101-196 (498)
212 PF05822 UMPH-1: Pyrimidine 5' 95.9 0.038 8.3E-07 47.2 7.6 101 167-270 81-198 (246)
213 TIGR01658 EYA-cons_domain eyes 95.7 0.075 1.6E-06 44.9 8.3 63 214-280 197-259 (274)
214 KOG0206 P-type ATPase [General 95.6 0.034 7.3E-07 57.4 7.1 30 175-204 650-679 (1151)
215 KOG2116 Protein involved in pl 95.2 0.094 2E-06 50.3 8.1 95 179-273 561-672 (738)
216 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.1 0.15 3.2E-06 44.2 8.8 101 177-279 18-144 (249)
217 KOG3128 Uncharacterized conser 95.0 0.25 5.4E-06 42.1 9.2 123 131-270 107-247 (298)
218 PRK10444 UMP phosphatase; Prov 94.9 0.14 3.1E-06 44.2 8.2 103 176-280 17-144 (248)
219 PLN03063 alpha,alpha-trehalose 94.1 0.38 8.2E-06 48.8 10.1 88 223-314 662-790 (797)
220 TIGR02468 sucrsPsyn_pln sucros 93.9 0.83 1.8E-05 47.3 11.9 73 203-279 923-1002(1050)
221 TIGR01458 HAD-SF-IIA-hyp3 HAD- 93.6 0.083 1.8E-06 46.0 3.9 50 176-227 21-73 (257)
222 COG5083 SMP2 Uncharacterized p 92.2 0.39 8.5E-06 44.1 6.1 92 179-273 406-516 (580)
223 TIGR01460 HAD-SF-IIA Haloacid 91.6 1.5 3.3E-05 37.5 9.0 85 176-273 14-102 (236)
224 PRK00192 mannosyl-3-phosphogly 91.4 0.45 9.8E-06 41.7 5.7 41 177-217 22-62 (273)
225 KOG3189 Phosphomannomutase [Li 91.1 5.7 0.00012 32.8 11.1 28 78-106 12-39 (252)
226 KOG0323 TFIIF-interacting CTD 90.5 0.51 1.1E-05 45.9 5.4 78 175-262 200-281 (635)
227 COG4850 Uncharacterized conser 90.4 3.3 7.1E-05 36.8 9.7 90 175-267 195-294 (373)
228 KOG2882 p-Nitrophenyl phosphat 90.2 2.8 6E-05 36.8 9.1 94 176-280 38-134 (306)
229 KOG0209 P-type ATPase [Inorgan 90.1 1.7 3.8E-05 43.3 8.6 42 175-216 674-715 (1160)
230 COG4502 5'(3')-deoxyribonucleo 89.7 1.2 2.6E-05 34.4 5.8 104 175-306 67-176 (180)
231 TIGR01456 CECR5 HAD-superfamil 89.5 1.5 3.2E-05 39.6 7.4 86 176-276 16-109 (321)
232 PF06437 ISN1: IMP-specific 5' 89.5 4.6 9.9E-05 36.8 10.1 43 236-280 350-401 (408)
233 TIGR01487 SPP-like sucrose-pho 89.1 0.94 2E-05 38.0 5.6 41 176-216 18-58 (215)
234 TIGR02461 osmo_MPG_phos mannos 88.9 1.1 2.3E-05 38.2 5.7 39 178-216 17-55 (225)
235 CHL00162 thiG thiamin biosynth 88.4 7.4 0.00016 33.4 10.2 100 175-282 117-222 (267)
236 TIGR02463 MPGP_rel mannosyl-3- 88.3 1.2 2.6E-05 37.5 5.7 38 179-216 19-56 (221)
237 PRK01158 phosphoglycolate phos 88.1 1.2 2.7E-05 37.6 5.7 40 177-216 21-60 (230)
238 PRK10513 sugar phosphate phosp 88.0 1.8 3.9E-05 37.6 6.8 40 177-216 21-60 (270)
239 cd04728 ThiG Thiazole synthase 88.0 9.5 0.00021 32.7 10.7 100 175-283 103-209 (248)
240 PF05690 ThiG: Thiazole biosyn 88.0 7.9 0.00017 32.9 10.0 96 175-280 103-206 (247)
241 PF03031 NIF: NLI interacting 87.3 0.29 6.3E-06 39.0 1.2 16 78-93 1-16 (159)
242 KOG0203 Na+/K+ ATPase, alpha s 87.3 1.6 3.6E-05 43.5 6.4 114 175-293 589-745 (1019)
243 PRK12702 mannosyl-3-phosphogly 86.9 1.6 3.6E-05 38.5 5.7 41 177-217 19-59 (302)
244 TIGR00099 Cof-subfamily Cof su 86.7 1.6 3.5E-05 37.6 5.7 41 176-216 16-56 (256)
245 PRK15126 thiamin pyrimidine py 86.6 1.6 3.5E-05 38.1 5.7 41 176-216 19-59 (272)
246 PRK11840 bifunctional sulfur c 86.3 11 0.00023 33.9 10.4 100 175-282 177-282 (326)
247 TIGR01482 SPP-subfamily Sucros 86.2 1.8 3.8E-05 36.5 5.6 39 177-215 16-54 (225)
248 PF02358 Trehalose_PPase: Treh 86.0 1.5 3.2E-05 37.5 5.0 38 236-273 166-206 (235)
249 PRK00208 thiG thiazole synthas 85.4 16 0.00035 31.3 10.7 100 175-283 103-209 (250)
250 PLN03064 alpha,alpha-trehalose 85.2 2.5 5.4E-05 43.5 6.8 39 175-213 621-660 (934)
251 PRK10530 pyridoxal phosphate ( 85.2 2 4.4E-05 37.3 5.6 40 177-216 21-60 (272)
252 PRK10976 putative hydrolase; P 85.2 2 4.3E-05 37.3 5.5 40 177-216 20-59 (266)
253 TIGR01486 HAD-SF-IIB-MPGP mann 84.3 2.5 5.3E-05 36.6 5.7 38 179-216 19-56 (256)
254 PF08282 Hydrolase_3: haloacid 84.1 2.1 4.5E-05 36.3 5.1 41 176-216 15-55 (254)
255 PRK03669 mannosyl-3-phosphogly 83.4 2.7 5.8E-05 36.8 5.6 38 178-215 26-63 (271)
256 COG0561 Cof Predicted hydrolas 83.0 2.8 6.1E-05 36.3 5.5 41 177-217 21-61 (264)
257 KOG4549 Magnesium-dependent ph 82.2 9.3 0.0002 29.1 7.1 87 175-262 43-133 (144)
258 PRK05406 LamB/YcsF family prot 80.3 4.6 0.0001 34.6 5.6 130 179-311 44-204 (246)
259 COG2022 ThiG Uncharacterized e 79.6 26 0.00057 29.8 9.6 98 175-280 110-213 (262)
260 PRK00994 F420-dependent methyl 79.6 33 0.00071 29.2 10.1 83 192-280 31-118 (277)
261 COG0731 Fe-S oxidoreductases [ 78.4 3.8 8.3E-05 36.2 4.7 38 173-210 89-127 (296)
262 PF13580 SIS_2: SIS domain; PD 78.3 29 0.00063 26.8 10.2 101 178-278 21-137 (138)
263 TIGR02329 propionate_PrpR prop 77.1 19 0.00041 34.9 9.4 88 180-280 85-172 (526)
264 PF06506 PrpR_N: Propionate ca 76.1 4.3 9.2E-05 33.0 4.1 82 182-280 67-152 (176)
265 KOG3040 Predicted sugar phosph 76.0 5.1 0.00011 33.4 4.4 36 178-213 25-60 (262)
266 PF06014 DUF910: Bacterial pro 73.3 2.5 5.4E-05 27.8 1.6 25 240-268 7-31 (62)
267 PF03808 Glyco_tran_WecB: Glyc 72.5 28 0.0006 28.1 8.0 75 181-261 37-111 (172)
268 PF02358 Trehalose_PPase: Treh 72.3 4.6 0.0001 34.4 3.6 13 81-93 1-13 (235)
269 PRK15424 propionate catabolism 72.3 26 0.00056 34.0 9.0 88 180-280 95-182 (538)
270 PTZ00174 phosphomannomutase; P 70.8 9.3 0.0002 32.8 5.2 37 176-212 22-58 (247)
271 cd05007 SIS_Etherase N-acetylm 70.2 72 0.0016 27.7 13.7 109 184-295 42-168 (257)
272 COG3769 Predicted hydrolase (H 69.8 8 0.00017 32.6 4.2 36 181-216 28-63 (274)
273 KOG2469 IMP-GMP specific 5'-nu 69.7 12 0.00026 34.4 5.7 101 179-280 201-335 (424)
274 smart00577 CPDc catalytic doma 68.9 3.1 6.7E-05 32.7 1.7 15 78-92 3-17 (148)
275 PRK13762 tRNA-modifying enzyme 68.8 14 0.0003 33.3 6.0 30 175-204 141-170 (322)
276 PLN02887 hydrolase family prot 68.3 11 0.00023 37.0 5.5 40 176-215 325-364 (580)
277 PLN02321 2-isopropylmalate syn 66.3 1.5E+02 0.0031 29.6 15.8 98 177-277 208-318 (632)
278 TIGR01485 SPP_plant-cyano sucr 64.7 11 0.00024 32.3 4.5 38 179-216 24-61 (249)
279 TIGR00262 trpA tryptophan synt 64.6 67 0.0015 27.8 9.3 94 177-279 125-228 (256)
280 TIGR02251 HIF-SF_euk Dullard-l 64.5 4.2 9.1E-05 32.6 1.7 16 78-93 2-17 (162)
281 COG2099 CobK Precorrin-6x redu 63.3 23 0.00049 30.6 5.8 118 177-308 113-252 (257)
282 PRK14502 bifunctional mannosyl 63.2 16 0.00035 36.3 5.6 38 178-215 435-472 (694)
283 PRK12569 hypothetical protein; 61.6 18 0.0004 31.0 5.0 128 179-311 47-205 (245)
284 PF02350 Epimerase_2: UDP-N-ac 61.4 1.1E+02 0.0024 27.8 10.5 99 179-294 200-300 (346)
285 TIGR03470 HpnH hopanoid biosyn 61.2 62 0.0013 29.0 8.7 30 174-203 82-111 (318)
286 PF02571 CbiJ: Precorrin-6x re 60.6 1E+02 0.0022 26.7 9.6 119 175-305 112-248 (249)
287 KOG1618 Predicted phosphatase 60.3 7.4 0.00016 34.6 2.5 51 232-282 269-344 (389)
288 PRK10187 trehalose-6-phosphate 60.0 13 0.00029 32.4 4.1 38 176-213 36-74 (266)
289 PF04413 Glycos_transf_N: 3-De 60.0 87 0.0019 25.6 8.7 89 179-280 35-127 (186)
290 PF03746 LamB_YcsF: LamB/YcsF 59.8 6.8 0.00015 33.6 2.1 129 180-311 43-202 (242)
291 KOG0205 Plasma membrane H+-tra 59.1 2E+02 0.0043 28.8 12.5 119 176-297 492-627 (942)
292 KOG0391 SNF2 family DNA-depend 58.5 9.1 0.0002 40.1 3.1 89 181-278 1265-1353(1958)
293 TIGR02250 FCP1_euk FCP1-like p 57.9 6.6 0.00014 31.3 1.7 17 77-93 6-22 (156)
294 PRK11070 ssDNA exonuclease Rec 57.5 1.7E+02 0.0037 28.8 11.5 109 178-294 52-173 (575)
295 cd06533 Glyco_transf_WecG_TagA 57.2 65 0.0014 25.9 7.4 75 181-261 35-109 (171)
296 PRK00286 xseA exodeoxyribonucl 57.1 1.2E+02 0.0026 28.6 10.2 70 193-264 136-208 (438)
297 TIGR00236 wecB UDP-N-acetylglu 56.3 76 0.0017 28.7 8.7 96 181-281 16-120 (365)
298 COG2897 SseA Rhodanese-related 56.2 48 0.001 29.3 6.9 87 192-280 31-124 (285)
299 PRK08649 inosine 5-monophospha 56.2 1.4E+02 0.0031 27.5 10.2 96 179-282 118-219 (368)
300 KOG0780 Signal recognition par 54.8 82 0.0018 29.2 8.1 55 224-278 186-248 (483)
301 smart00540 LEM in nuclear memb 54.7 15 0.00033 22.3 2.5 32 182-213 9-40 (44)
302 TIGR02990 ectoine_eutA ectoine 54.5 1.2E+02 0.0025 26.1 8.9 101 175-276 102-211 (239)
303 COG1834 N-Dimethylarginine dim 54.4 45 0.00097 29.1 6.2 80 182-270 41-147 (267)
304 PLN02334 ribulose-phosphate 3- 54.2 1.3E+02 0.0029 25.3 11.0 99 179-280 102-204 (229)
305 COG4821 Uncharacterized protei 53.7 1.3E+02 0.0029 25.1 12.8 118 179-298 25-168 (243)
306 KOG1618 Predicted phosphatase 53.2 33 0.00071 30.7 5.2 86 176-276 51-144 (389)
307 COG0761 lytB 4-Hydroxy-3-methy 52.8 84 0.0018 27.7 7.6 94 178-286 170-272 (294)
308 TIGR02495 NrdG2 anaerobic ribo 52.3 37 0.00079 27.7 5.4 30 175-204 73-102 (191)
309 TIGR02244 HAD-IG-Ncltidse HAD 52.3 14 0.0003 33.6 3.0 20 74-93 9-28 (343)
310 COG0378 HypB Ni2+-binding GTPa 51.9 14 0.0003 30.6 2.7 78 227-309 19-101 (202)
311 PRK08185 hypothetical protein; 51.6 1.1E+02 0.0024 27.0 8.4 98 182-284 2-104 (283)
312 TIGR01858 tag_bisphos_ald clas 51.3 1.7E+02 0.0036 25.9 9.5 98 181-283 4-107 (282)
313 COG1540 Uncharacterized protei 51.1 19 0.00041 30.6 3.3 129 179-310 44-203 (252)
314 TIGR03590 PseG pseudaminic aci 50.9 1.7E+02 0.0037 25.6 12.3 101 183-297 22-126 (279)
315 PRK13125 trpA tryptophan synth 49.4 1.7E+02 0.0036 25.1 10.3 94 179-279 116-215 (244)
316 TIGR02826 RNR_activ_nrdG3 anae 49.0 40 0.00087 26.5 4.8 26 178-203 74-99 (147)
317 COG1922 WecG Teichoic acid bio 49.0 83 0.0018 27.2 7.0 77 179-261 95-171 (253)
318 PRK10076 pyruvate formate lyas 48.2 34 0.00074 28.8 4.6 29 175-203 49-78 (213)
319 smart00052 EAL Putative diguan 48.0 92 0.002 26.0 7.4 91 179-276 133-229 (241)
320 PHA01735 hypothetical protein 47.5 84 0.0018 21.1 5.7 51 154-205 9-59 (76)
321 COG0052 RpsB Ribosomal protein 47.1 1.9E+02 0.0041 25.0 11.5 49 252-303 157-208 (252)
322 COG0541 Ffh Signal recognition 47.1 1.1E+02 0.0023 28.8 7.8 98 177-278 139-247 (451)
323 TIGR00696 wecB_tagA_cpsF bacte 46.8 1.6E+02 0.0034 24.0 8.1 74 181-261 37-110 (177)
324 COG4943 Predicted signal trans 46.8 60 0.0013 30.8 6.1 37 178-214 400-436 (524)
325 TIGR03365 Bsubt_queE 7-cyano-7 46.7 21 0.00045 30.6 3.1 30 175-204 83-112 (238)
326 PRK03692 putative UDP-N-acetyl 45.6 1.4E+02 0.0031 25.6 8.1 81 181-268 94-176 (243)
327 COG4483 Uncharacterized protei 45.2 28 0.0006 23.0 2.7 26 240-269 7-32 (68)
328 cd01445 TST_Repeats Thiosulfat 43.8 84 0.0018 24.2 5.9 49 232-280 75-131 (138)
329 KOG1359 Glycine C-acetyltransf 43.7 22 0.00048 31.4 2.8 96 178-281 273-378 (417)
330 PF01993 MTD: methylene-5,6,7, 43.6 1E+02 0.0023 26.4 6.6 82 192-279 30-116 (276)
331 cd05008 SIS_GlmS_GlmD_1 SIS (S 43.4 37 0.0008 25.3 3.8 28 178-205 59-86 (126)
332 cd05014 SIS_Kpsf KpsF-like pro 42.9 30 0.00066 25.9 3.3 28 178-205 60-87 (128)
333 PRK12342 hypothetical protein; 42.7 2.3E+02 0.0049 24.6 9.3 83 188-276 47-141 (254)
334 PHA03050 glutaredoxin; Provisi 42.5 1.4E+02 0.003 22.0 8.2 84 182-271 3-93 (108)
335 PRK08005 epimerase; Validated 41.7 2.1E+02 0.0046 24.0 9.9 94 179-278 93-191 (210)
336 cd01766 Ufm1 Urm1-like ubiquit 41.7 46 0.001 22.6 3.4 43 230-272 22-64 (82)
337 COG2200 Rtn c-di-GMP phosphodi 41.4 2E+02 0.0044 24.7 8.5 94 178-276 135-232 (256)
338 cd00381 IMPDH IMPDH: The catal 41.0 2.7E+02 0.0058 25.1 9.5 93 179-278 120-226 (325)
339 PRK10669 putative cation:proto 40.5 1.6E+02 0.0035 28.7 8.6 112 182-311 430-550 (558)
340 COG0191 Fba Fructose/tagatose 40.5 2.6E+02 0.0057 24.7 9.6 97 181-282 6-109 (286)
341 TIGR02471 sucr_syn_bact_C sucr 40.2 74 0.0016 26.8 5.6 33 183-216 22-54 (236)
342 cd01948 EAL EAL domain. This d 40.2 92 0.002 26.0 6.2 89 180-276 133-228 (240)
343 KOG2469 IMP-GMP specific 5'-nu 39.7 15 0.00031 33.9 1.1 21 73-93 23-43 (424)
344 COG1058 CinA Predicted nucleot 38.8 1E+02 0.0022 26.8 6.0 61 224-284 7-73 (255)
345 cd00947 TBP_aldolase_IIB Tagat 38.7 2.8E+02 0.006 24.5 9.0 96 182-282 2-103 (276)
346 TIGR03140 AhpF alkyl hydropero 38.4 1.9E+02 0.0041 27.9 8.6 30 249-278 210-242 (515)
347 cd04726 KGPDC_HPS 3-Keto-L-gul 38.3 2.2E+02 0.0047 23.2 10.2 93 180-280 91-188 (202)
348 PRK14021 bifunctional shikimat 38.2 3.4E+02 0.0074 26.5 10.3 35 245-279 263-303 (542)
349 cd05710 SIS_1 A subgroup of th 37.9 47 0.001 24.8 3.6 28 178-205 60-87 (120)
350 PLN02591 tryptophan synthase 37.8 2.7E+02 0.0058 24.1 10.5 99 177-280 116-220 (250)
351 TIGR00237 xseA exodeoxyribonuc 37.8 1.3E+02 0.0028 28.4 7.2 72 193-266 130-205 (432)
352 PRK15317 alkyl hydroperoxide r 37.7 1.9E+02 0.0041 27.9 8.5 28 252-279 212-242 (517)
353 cd04729 NanE N-acetylmannosami 37.6 2.4E+02 0.0052 23.5 10.0 95 180-280 110-208 (219)
354 PF05761 5_nucleotid: 5' nucle 37.5 30 0.00065 32.7 2.9 20 74-93 9-28 (448)
355 PF14336 DUF4392: Domain of un 37.5 1.9E+02 0.0042 25.6 7.8 25 178-202 62-86 (291)
356 COG1570 XseA Exonuclease VII, 37.3 2.4E+02 0.0053 26.6 8.6 66 192-259 135-201 (440)
357 PF06189 5-nucleotidase: 5'-nu 37.0 2.8E+02 0.0062 24.1 8.8 76 192-280 36-111 (264)
358 TIGR03151 enACPred_II putative 36.9 3.1E+02 0.0067 24.5 9.5 89 182-280 99-192 (307)
359 PRK05294 carB carbamoyl phosph 36.7 2.6E+02 0.0056 29.9 9.9 79 236-319 128-210 (1066)
360 PRK02947 hypothetical protein; 36.6 2.7E+02 0.006 23.8 11.5 104 178-281 26-143 (246)
361 PF04724 Glyco_transf_17: Glyc 36.5 79 0.0017 29.0 5.3 56 200-257 88-143 (356)
362 cd05212 NAD_bind_m-THF_DH_Cycl 36.3 1.5E+02 0.0034 23.0 6.3 25 237-261 12-38 (140)
363 PF01380 SIS: SIS domain SIS d 36.1 63 0.0014 24.1 4.1 29 178-206 66-94 (131)
364 KOG2832 TFIIF-interacting CTD 35.8 1.2E+02 0.0026 27.7 6.1 81 175-261 213-293 (393)
365 PRK05301 pyrroloquinoline quin 35.7 77 0.0017 29.1 5.3 28 175-202 73-100 (378)
366 COG0381 WecB UDP-N-acetylgluco 35.6 2.9E+02 0.0063 25.6 8.7 94 182-283 20-128 (383)
367 TIGR00715 precor6x_red precorr 35.4 87 0.0019 27.2 5.2 59 241-307 190-254 (256)
368 cd05017 SIS_PGI_PMI_1 The memb 35.4 1.8E+02 0.004 21.4 6.6 25 178-202 56-80 (119)
369 TIGR00167 cbbA ketose-bisphosp 35.1 3.2E+02 0.007 24.2 10.1 100 180-282 5-111 (288)
370 cd08197 DOIS 2-deoxy-scyllo-in 35.0 3.6E+02 0.0077 24.7 10.6 46 235-280 65-119 (355)
371 cd02071 MM_CoA_mut_B12_BD meth 34.0 2E+02 0.0043 21.5 9.1 85 185-276 20-107 (122)
372 PRK12737 gatY tagatose-bisphos 33.9 3.4E+02 0.0073 24.0 9.2 98 180-282 5-108 (284)
373 TIGR03127 RuMP_HxlB 6-phospho 33.6 56 0.0012 26.3 3.6 30 178-207 85-114 (179)
374 PRK12738 kbaY tagatose-bisphos 33.6 3.4E+02 0.0074 24.0 9.5 98 181-283 6-109 (286)
375 COG1015 DeoB Phosphopentomutas 33.5 2.6E+02 0.0056 25.7 7.8 88 176-263 221-337 (397)
376 cd00886 MogA_MoaB MogA_MoaB fa 33.4 2.3E+02 0.0049 22.2 7.0 48 235-282 20-72 (152)
377 PF00532 Peripla_BP_1: Peripla 33.3 1.9E+02 0.0041 25.2 7.2 35 185-220 24-58 (279)
378 PRK11145 pflA pyruvate formate 32.9 55 0.0012 27.9 3.6 29 175-203 81-110 (246)
379 TIGR03278 methan_mark_10 putat 32.8 78 0.0017 29.6 4.7 28 175-202 85-113 (404)
380 PF04123 DUF373: Domain of unk 32.7 1.8E+02 0.0039 26.5 6.8 61 183-269 55-117 (344)
381 TIGR03568 NeuC_NnaA UDP-N-acet 32.6 3.9E+02 0.0084 24.4 10.6 51 254-306 283-335 (365)
382 cd05013 SIS_RpiR RpiR-like pro 32.5 66 0.0014 24.1 3.7 27 179-205 74-100 (139)
383 PRK01294 lipase chaperone; Pro 32.4 3.8E+02 0.0082 24.4 9.0 29 80-110 74-102 (336)
384 PRK09195 gatY tagatose-bisphos 32.4 3.6E+02 0.0077 23.9 9.3 97 181-282 6-108 (284)
385 PRK04302 triosephosphate isome 32.4 3E+02 0.0066 23.1 8.8 99 176-280 98-204 (223)
386 PRK05752 uroporphyrinogen-III 32.1 2.8E+02 0.006 23.8 7.9 21 177-197 11-31 (255)
387 PF01113 DapB_N: Dihydrodipico 32.1 1.2E+02 0.0025 22.9 4.9 38 176-213 75-112 (124)
388 PF11071 DUF2872: Protein of u 32.1 1.5E+02 0.0033 22.8 5.3 57 248-304 69-136 (141)
389 TIGR02493 PFLA pyruvate format 32.0 1E+02 0.0023 25.9 5.2 28 175-202 76-104 (235)
390 TIGR01361 DAHP_synth_Bsub phos 31.9 3.4E+02 0.0074 23.5 9.5 102 182-287 122-238 (260)
391 cd06539 CIDE_N_A CIDE_N domain 31.5 30 0.00064 24.0 1.3 16 78-93 41-56 (78)
392 cd01965 Nitrogenase_MoFe_beta_ 31.5 4.4E+02 0.0095 24.7 9.7 22 255-277 374-395 (428)
393 cd07948 DRE_TIM_HCS Saccharomy 31.5 3.5E+02 0.0076 23.5 8.5 95 178-277 111-215 (262)
394 PF09269 DUF1967: Domain of un 31.2 39 0.00084 22.7 1.9 21 240-260 45-65 (69)
395 cd06537 CIDE_N_B CIDE_N domain 31.2 30 0.00065 24.1 1.3 16 78-93 40-55 (81)
396 TIGR01369 CPSaseII_lrg carbamo 31.1 2.2E+02 0.0048 30.3 8.3 79 237-319 128-209 (1050)
397 PRK07084 fructose-bisphosphate 31.1 4E+02 0.0087 24.1 8.7 102 179-283 10-120 (321)
398 PLN02951 Molybderin biosynthes 30.9 1.8E+02 0.0039 26.8 6.8 29 175-203 117-147 (373)
399 PF03808 Glyco_tran_WecB: Glyc 30.8 2.2E+02 0.0048 22.8 6.7 29 237-265 34-62 (172)
400 KOG1605 TFIIF-interacting CTD 30.8 29 0.00063 30.2 1.5 89 175-274 130-224 (262)
401 COG1964 Predicted Fe-S oxidore 30.7 89 0.0019 29.4 4.6 89 146-240 91-185 (475)
402 PRK07998 gatY putative fructos 30.7 3.8E+02 0.0083 23.7 9.1 96 180-280 5-106 (283)
403 PF00578 AhpC-TSA: AhpC/TSA fa 30.4 1.1E+02 0.0023 22.4 4.5 36 179-214 46-81 (124)
404 TIGR01304 IMP_DH_rel_2 IMP deh 30.4 4.4E+02 0.0095 24.3 11.0 95 179-281 119-219 (369)
405 PLN03017 trehalose-phosphatase 30.3 81 0.0017 29.0 4.3 34 176-210 133-166 (366)
406 PRK02261 methylaspartate mutas 30.0 2.6E+02 0.0056 21.6 8.8 18 182-199 44-61 (137)
407 TIGR03595 Obg_CgtA_exten Obg f 29.8 56 0.0012 21.9 2.5 21 240-260 45-65 (69)
408 smart00266 CAD Domains present 29.5 31 0.00067 23.6 1.1 16 78-93 39-54 (74)
409 cd04795 SIS SIS domain. SIS (S 29.2 72 0.0016 21.7 3.2 22 178-199 60-81 (87)
410 COG3010 NanE Putative N-acetyl 29.2 2.2E+02 0.0047 24.0 6.1 60 223-284 100-161 (229)
411 PRK00208 thiG thiazole synthas 29.2 3.8E+02 0.0082 23.2 7.9 90 182-277 52-150 (250)
412 cd05006 SIS_GmhA Phosphoheptos 29.2 68 0.0015 25.8 3.4 29 177-205 113-141 (177)
413 cd00885 cinA Competence-damage 29.0 2.1E+02 0.0046 23.0 6.2 48 236-283 20-70 (170)
414 PF02606 LpxK: Tetraacyldisacc 28.8 4.4E+02 0.0095 23.8 9.5 25 179-203 52-76 (326)
415 PRK05835 fructose-bisphosphate 28.8 4.3E+02 0.0093 23.7 9.8 96 181-281 5-107 (307)
416 PF10113 Fibrillarin_2: Fibril 28.5 1.5E+02 0.0032 27.7 5.6 44 237-280 208-255 (505)
417 TIGR02109 PQQ_syn_pqqE coenzym 28.5 70 0.0015 29.1 3.7 28 175-202 64-91 (358)
418 PF04007 DUF354: Protein of un 28.4 4.5E+02 0.0098 23.8 9.7 91 182-282 17-114 (335)
419 TIGR01101 V_ATP_synt_F vacuola 28.4 2.6E+02 0.0056 21.0 6.2 64 179-245 46-110 (115)
420 PLN02423 phosphomannomutase 28.3 1.1E+02 0.0024 26.2 4.7 35 176-211 24-58 (245)
421 PRK11059 regulatory protein Cs 28.2 1.7E+02 0.0037 29.1 6.6 93 177-276 531-629 (640)
422 PRK12570 N-acetylmuramic acid- 28.1 4.3E+02 0.0093 23.5 14.2 60 235-295 111-177 (296)
423 PRK00748 1-(5-phosphoribosyl)- 28.1 3.6E+02 0.0078 22.6 8.4 43 235-280 177-222 (233)
424 COG1663 LpxK Tetraacyldisaccha 28.0 1.5E+02 0.0033 26.8 5.5 25 179-203 64-88 (336)
425 COG2044 Predicted peroxiredoxi 27.7 85 0.0018 23.7 3.3 27 175-201 58-84 (120)
426 TIGR00221 nagA N-acetylglucosa 27.7 4.5E+02 0.0097 24.3 8.8 35 178-212 176-211 (380)
427 PF02222 ATP-grasp: ATP-grasp 27.6 1E+02 0.0022 24.9 4.1 69 244-319 1-72 (172)
428 KOG0541 Alkyl hydroperoxide re 27.6 2.4E+02 0.0051 22.6 5.8 40 178-217 64-104 (171)
429 PRK13937 phosphoheptose isomer 27.5 84 0.0018 25.7 3.7 29 177-205 118-146 (188)
430 COG0337 AroB 3-dehydroquinate 27.3 3.3E+02 0.0071 25.0 7.6 97 179-279 19-128 (360)
431 cd01615 CIDE_N CIDE_N domain, 27.2 37 0.00079 23.5 1.2 16 78-93 41-56 (78)
432 PRK03670 competence damage-ind 27.1 2E+02 0.0044 24.9 6.1 59 224-282 6-71 (252)
433 TIGR01285 nifN nitrogenase mol 27.0 5.4E+02 0.012 24.2 10.4 37 236-277 361-397 (432)
434 TIGR00441 gmhA phosphoheptose 26.8 80 0.0017 24.8 3.3 28 178-205 92-119 (154)
435 TIGR02494 PFLE_PFLC glycyl-rad 26.7 1.2E+02 0.0026 26.7 4.8 28 175-202 136-164 (295)
436 cd05005 SIS_PHI Hexulose-6-pho 26.3 85 0.0018 25.3 3.5 29 178-206 88-116 (179)
437 cd01971 Nitrogenase_VnfN_like 26.3 4.5E+02 0.0097 24.6 8.8 100 179-278 103-216 (427)
438 PF06117 DUF957: Enterobacteri 26.3 60 0.0013 21.3 2.0 27 78-106 25-51 (65)
439 PF04413 Glycos_transf_N: 3-De 26.2 78 0.0017 25.9 3.2 69 183-264 109-184 (186)
440 TIGR02151 IPP_isom_2 isopenten 26.1 1E+02 0.0022 27.9 4.2 57 253-309 256-314 (333)
441 TIGR00877 purD phosphoribosyla 26.1 4.1E+02 0.0089 24.7 8.5 118 179-308 51-173 (423)
442 PRK12857 fructose-1,6-bisphosp 26.1 4.6E+02 0.01 23.2 9.2 98 181-283 6-109 (284)
443 PF02350 Epimerase_2: UDP-N-ac 26.0 1.4E+02 0.0029 27.2 5.1 91 187-280 2-100 (346)
444 TIGR00388 glyQ glycyl-tRNA syn 25.7 73 0.0016 27.6 2.9 40 237-276 89-131 (293)
445 PF08013 Tagatose_6_P_K: Tagat 25.6 1.5E+02 0.0033 27.7 5.2 97 181-279 4-128 (424)
446 cd06536 CIDE_N_ICAD CIDE_N dom 25.6 40 0.00087 23.5 1.2 16 78-93 43-58 (80)
447 COG0378 HypB Ni2+-binding GTPa 25.5 4E+02 0.0086 22.2 7.6 74 181-261 30-106 (202)
448 PF00875 DNA_photolyase: DNA p 25.5 83 0.0018 24.9 3.2 37 178-214 52-88 (165)
449 cd02801 DUS_like_FMN Dihydrour 25.4 4E+02 0.0086 22.2 9.1 45 235-282 170-217 (231)
450 PF09949 DUF2183: Uncharacteri 25.3 2.7E+02 0.0059 20.2 7.2 32 236-269 51-83 (100)
451 PLN02151 trehalose-phosphatase 25.2 1.2E+02 0.0025 27.8 4.4 36 175-211 119-154 (354)
452 KOG1529 Mercaptopyruvate sulfu 25.2 4.8E+02 0.01 23.1 7.9 98 183-280 11-122 (286)
453 cd05015 SIS_PGI_1 Phosphogluco 25.2 3.4E+02 0.0074 21.3 6.8 22 192-213 49-70 (158)
454 PRK10415 tRNA-dihydrouridine s 25.1 5E+02 0.011 23.3 9.7 51 232-285 178-231 (321)
455 PLN02580 trehalose-phosphatase 25.0 1.2E+02 0.0027 28.0 4.6 37 175-212 140-176 (384)
456 PF05240 APOBEC_C: APOBEC-like 25.0 1.1E+02 0.0023 19.7 2.9 22 179-200 2-23 (55)
457 PF03332 PMM: Eukaryotic phosp 24.4 1.3E+02 0.0029 25.4 4.2 29 181-210 1-29 (220)
458 PRK06801 hypothetical protein; 24.4 5E+02 0.011 23.0 9.8 99 180-283 5-109 (286)
459 PRK01130 N-acetylmannosamine-6 24.3 4.2E+02 0.0091 22.0 11.3 95 179-279 105-203 (221)
460 PF02593 dTMP_synthase: Thymid 24.0 76 0.0016 26.8 2.8 91 176-273 59-156 (217)
461 COG0602 NrdG Organic radical a 23.9 98 0.0021 26.0 3.5 28 177-204 84-111 (212)
462 PRK12358 putative 6-phosphoglu 23.8 2E+02 0.0043 24.6 5.4 97 184-280 20-127 (239)
463 cd04728 ThiG Thiazole synthase 23.8 4.5E+02 0.0097 22.7 7.3 93 179-277 49-150 (248)
464 PRK07709 fructose-bisphosphate 23.6 5.2E+02 0.011 22.9 11.0 101 180-283 5-112 (285)
465 PRK01215 competence damage-ind 23.6 2.6E+02 0.0056 24.4 6.1 47 236-282 24-73 (264)
466 KOG1154 Gamma-glutamyl kinase 23.5 1.3E+02 0.0028 25.8 4.0 34 179-212 35-68 (285)
467 cd06538 CIDE_N_FSP27 CIDE_N do 23.4 48 0.001 23.0 1.2 16 78-93 40-55 (79)
468 PF06901 FrpC: RTX iron-regula 23.4 46 0.00099 27.3 1.3 15 78-92 59-73 (271)
469 KOG3483 Uncharacterized conser 23.3 1E+02 0.0022 21.0 2.7 44 230-273 33-76 (94)
470 PRK00414 gmhA phosphoheptose i 23.3 1.1E+02 0.0025 25.1 3.7 28 178-205 124-151 (192)
471 PF00478 IMPDH: IMP dehydrogen 23.3 5.8E+02 0.013 23.4 9.0 101 176-280 104-242 (352)
472 COG1609 PurR Transcriptional r 23.2 5.4E+02 0.012 23.1 8.4 24 178-201 160-184 (333)
473 cd06589 GH31 The enzymes of gl 23.1 88 0.0019 27.1 3.2 37 176-212 63-100 (265)
474 PF03020 LEM: LEM domain; Int 22.9 12 0.00026 22.6 -1.6 31 183-213 10-40 (43)
475 cd01965 Nitrogenase_MoFe_beta_ 22.9 6.2E+02 0.013 23.7 9.0 98 179-278 98-230 (428)
476 COG1180 PflA Pyruvate-formate 22.9 84 0.0018 27.3 3.0 26 178-203 98-123 (260)
477 COG3742 Uncharacterized protei 22.8 3.5E+02 0.0077 20.6 7.3 75 179-267 51-129 (131)
478 PRK06806 fructose-bisphosphate 22.7 5.3E+02 0.012 22.7 10.0 100 180-284 5-110 (281)
479 TIGR03572 WbuZ glycosyl amidat 22.7 4.6E+02 0.01 22.0 9.4 44 233-279 182-228 (232)
480 PF13382 Adenine_deam_C: Adeni 22.6 1.6E+02 0.0035 23.8 4.3 35 246-280 60-98 (171)
481 PRK07807 inosine 5-monophospha 22.6 5.9E+02 0.013 24.5 8.8 46 231-279 310-360 (479)
482 PRK06552 keto-hydroxyglutarate 22.5 4.7E+02 0.01 21.9 10.2 83 184-276 6-93 (213)
483 COG1458 Predicted DNA-binding 22.4 4.4E+02 0.0095 21.9 6.6 35 179-213 137-174 (221)
484 cd04740 DHOD_1B_like Dihydroor 22.3 5.3E+02 0.012 22.5 10.6 42 238-282 221-264 (296)
485 PF02698 DUF218: DUF218 domain 22.1 3.6E+02 0.0078 20.8 6.3 61 224-284 42-111 (155)
486 KOG0023 Alcohol dehydrogenase, 22.1 2.1E+02 0.0046 25.9 5.2 57 243-299 173-236 (360)
487 cd06259 YdcF-like YdcF-like. Y 22.1 3.5E+02 0.0076 20.7 6.2 29 242-272 88-119 (150)
488 PF02882 THF_DHG_CYH_C: Tetrah 22.0 4.1E+02 0.009 21.2 6.5 64 236-299 19-89 (160)
489 COG1184 GCD2 Translation initi 21.7 5.9E+02 0.013 22.8 8.7 19 264-282 214-232 (301)
490 TIGR01369 CPSaseII_lrg carbamo 21.6 9E+02 0.019 25.9 10.7 96 182-280 481-597 (1050)
491 PF10307 DUF2410: Hypothetical 21.5 4.8E+02 0.01 21.7 8.7 91 179-270 57-152 (197)
492 PF07085 DRTGG: DRTGG domain; 21.4 71 0.0015 23.1 1.9 36 251-286 40-76 (105)
493 cd02071 MM_CoA_mut_B12_BD meth 21.3 2.2E+02 0.0048 21.2 4.7 20 182-201 40-59 (122)
494 PRK14501 putative bifunctional 21.2 1.3E+02 0.0027 30.6 4.2 37 177-213 515-552 (726)
495 PF13686 DrsE_2: DsrE/DsrF/Drs 21.2 91 0.002 24.5 2.6 23 178-200 90-112 (148)
496 KOG0385 Chromatin remodeling c 20.8 70 0.0015 32.3 2.2 37 182-220 477-513 (971)
497 PRK10517 magnesium-transportin 20.8 8.8E+02 0.019 25.5 10.3 19 75-93 369-387 (902)
498 PTZ00170 D-ribulose-5-phosphat 20.7 5.2E+02 0.011 21.8 8.4 96 181-279 103-202 (228)
499 PRK13111 trpA tryptophan synth 20.6 5.7E+02 0.012 22.2 9.6 93 177-279 127-229 (258)
500 TIGR01521 FruBisAldo_II_B fruc 20.6 6.6E+02 0.014 23.0 9.6 96 181-281 4-106 (347)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=1.9e-37 Score=273.20 Aligned_cols=242 Identities=74% Similarity=1.190 Sum_probs=195.4
Q ss_pred CCceEEEEeCCCccccCC-ccchHHHHHHHHHHcCC-CCCCchhHHHHHHHhcCcHHHHHHHHhhcCCC----CCCCCCH
Q 020874 75 VLPSALLFDCDGVLVDTE-KDGHRISFNDTFKEKEL-GVTWDVDLYGELLKIGGGKERMTAYFNKTGWP----EKAPSDE 148 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~ 148 (320)
..+++|||||||||+|+. . .+..+|.++++++|+ ...++.+.+..+...|.+...+..++...+++ ...+..+
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~-~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERD-GHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccH-HHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCccc
Confidence 457999999999999999 6 578899999999998 43445554544444777777777766655554 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC
Q 020874 149 EERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD 228 (320)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d 228 (320)
+..++.++.+.+...+.|.+.+....+.++||+.++|+.|+++|++++|+||++...+...++.+++..+++...+++++
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 196 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAGD 196 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEEecc
Confidence 44445555555555566666655444689999999999999999999999999999999888877544555544455788
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
+++..||+|++|..+++++|++|++++||||+.+|+++|+++|+.+|++.+|+...+.+..++++++++.|+...-++++
T Consensus 197 ~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~~~~ 276 (286)
T PLN02779 197 DVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDFDLL 276 (286)
T ss_pred ccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhhHHH
Confidence 88899999999999999999999999999999999999999999999999988776667789999999999999999999
Q ss_pred hcccccccc
Q 020874 309 FCGSLLQKQ 317 (320)
Q Consensus 309 ~~~~~~~~~ 317 (320)
||+++|.||
T Consensus 277 ~~~~~~~~~ 285 (286)
T PLN02779 277 FCESLLTKQ 285 (286)
T ss_pred HHHHHhhcc
Confidence 999999987
No 2
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=230.04 Aligned_cols=215 Identities=29% Similarity=0.416 Sum_probs=169.6
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
+++++|+||+||||+|+... +..+++.+++.++... .+.+.+... .|.+...+...+.... ......+.
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--ig~~~~~~~~~~~~~~-------~~~~~~~~ 70 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAED-ILRAFNAALAELGLPP-LDEEEIRQL--IGLGLDELIERLLGEA-------DEEAAAEL 70 (220)
T ss_pred CCCCEEEEeCCCccccChHH-HHHHHHHHHHHcCCCC-CCHHHHHHH--hcCCHHHHHHHHhccc-------cchhHHHH
Confidence 56899999999999999985 7778999999999884 344444444 5555554444322210 11111134
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCC
Q 020874 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (320)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~K 234 (320)
++.+.+...+.+.+.. ...++||+.++|+.|+++|++++|+||++...++..++++++..+|+ .++++++....|
T Consensus 71 ~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~--~i~g~~~~~~~K 145 (220)
T COG0546 71 VERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFD--VIVGGDDVPPPK 145 (220)
T ss_pred HHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccc--eEEcCCCCCCCC
Confidence 4444444444433322 25789999999999999999999999999999999999999999999 788888889999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhHH
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEERF 305 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l~ 305 (320)
|+|..+..+++++|++|++++||||+.+|+++|++||+.+|+|.||+...+.+ .++|++++++.||...+.
T Consensus 146 P~P~~l~~~~~~~~~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~ 218 (220)
T COG0546 146 PDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLA 218 (220)
T ss_pred cCHHHHHHHHHHhCCChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHh
Confidence 99999999999999998899999999999999999999999999998633333 569999999999887664
No 3
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=100.00 E-value=2.2e-32 Score=245.21 Aligned_cols=217 Identities=20% Similarity=0.249 Sum_probs=169.6
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
..++|||||||||+|+...++..+|..+++++|.... ..+.+..+ .|.+.......+.... ......+++.
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~-~~e~~~~~--~G~~~~~~l~~ll~~~------~~~~~~e~l~ 200 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPP-PAFILRRV--EGMKNEQAISEVLCWS------RDPAELRRMA 200 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCC-HHHHHHHh--cCCCHHHHHHHHhhcc------CCHHHHHHHH
Confidence 3569999999999999875577799999999998743 22223332 5666555544332111 1233333333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
.. +.+.|.+... ....++||+.++|+.|+++|++++|+||+....++..++.+++..+|+ .+++++++..+||
T Consensus 201 ~~----~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd--~Iv~sddv~~~KP 273 (381)
T PLN02575 201 TR----KEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFS--VIVAAEDVYRGKP 273 (381)
T ss_pred HH----HHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHce--EEEecCcCCCCCC
Confidence 33 3333333332 236789999999999999999999999999999999999999999999 8999999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhhh
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLAF 309 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~ 309 (320)
+|++|..+++++|+.|++|+||||+..|+++|+++||.+|++.+++ ....+..++++++++.||....++.++
T Consensus 274 ~Peifl~A~~~lgl~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~-~~~~l~~Ad~iI~s~~EL~~~~l~~l~ 346 (381)
T PLN02575 274 DPEMFIYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKH-PIYELGAADLVVRRLDELSIVDLKNLA 346 (381)
T ss_pred CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEECCCC-ChhHhcCCCEEECCHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998764 333456799999999999777776664
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=9.7e-32 Score=230.26 Aligned_cols=212 Identities=25% Similarity=0.331 Sum_probs=162.8
Q ss_pred CCCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHH
Q 020874 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 74 ~~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
..|+|+|+||+||||+|+... +..++..+++++|.+. .+.+.+... .|.+.+.+...+... ......++
T Consensus 9 ~~~~k~viFD~DGTL~Ds~~~-~~~a~~~~~~~~g~~~-~~~~~~~~~--~g~~~~~~~~~~~~~-------~~~~~~~~ 77 (229)
T PRK13226 9 VRFPRAVLFDLDGTLLDSAPD-MLATVNAMLAARGRAP-ITLAQLRPV--VSKGARAMLAVAFPE-------LDAAARDA 77 (229)
T ss_pred cccCCEEEEcCcCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hhhHHHHHHHHHhcc-------CChHHHHH
Confidence 366799999999999999984 8889999999999863 344444333 444444433322111 12233334
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~ 233 (320)
+.+.+.+.+. +.... ..+++||+.++|+.|+++|++++++||++...+...++.+++..+|+ .++++++++..
T Consensus 78 ~~~~~~~~~~----~~~~~-~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~ 150 (229)
T PRK13226 78 LIPEFLQRYE----ALIGT-QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCA--VLIGGDTLAER 150 (229)
T ss_pred HHHHHHHHHH----Hhhhh-cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhccc--EEEecCcCCCC
Confidence 4444333322 22221 26889999999999999999999999999998999999998888887 77888888899
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc-ccc--cCCCeeccCCCCChhh
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE-EDF--LNADAVFDCIGDPPEE 303 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~-~~~--~~a~~vi~~l~el~~~ 303 (320)
||+|++|.++++++|++|++++||||+.+|+++|+++|+.+|++.||+... +.. .+++++++++.||.+.
T Consensus 151 KP~p~~~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~ 223 (229)
T PRK13226 151 KPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNP 223 (229)
T ss_pred CCCHHHHHHHHHHhCCChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998633 222 4699999998887654
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=5e-32 Score=235.06 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=167.2
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
.+|+|||||||||+|+...++..+|.++++++|+.... .+.+... .|.+.......+.... ...+...++.
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~-~e~~~~~--~G~~~~~~~~~l~~~~------~~~~~~~~l~ 93 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPP-AFLLKRA--EGMKNEQAISEVLCWS------RDFLQMKRLA 93 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCH-HHHHHHh--cCCCHHHHHHHHhccC------CCHHHHHHHH
Confidence 35699999999999997545778999999999987442 2222222 5666555544432110 1222233332
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
.. ....+. ........++||+.++|+.|+++|++++|+||+....+...++++++..+|+ .+++++++..+||
T Consensus 94 ~~----~~~~~~-~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~ii~~~d~~~~KP 166 (260)
T PLN03243 94 IR----KEDLYE-YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFS--VVLAAEDVYRGKP 166 (260)
T ss_pred HH----HHHHHH-HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCc--EEEecccCCCCCC
Confidence 22 222221 2222347789999999999999999999999999999999999999888998 8999999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
+|++|..+++++|+.|++++||||+..|+++|+++||.+|++. ++.....+..++++++++.|+....++-+
T Consensus 167 ~Pe~~~~a~~~l~~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~~~~~ 238 (260)
T PLN03243 167 DPEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVDLKNL 238 (260)
T ss_pred CHHHHHHHHHHhCCChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999997 55555566779999999999988777655
No 6
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=1e-31 Score=232.68 Aligned_cols=210 Identities=24% Similarity=0.308 Sum_probs=160.1
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCC--CCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELG--VTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERK 152 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (320)
.++++|+|||||||+|+.. .+..+|.++++++|.. .....+.+... ..|.+...+...+... ..+...
T Consensus 20 ~~~k~viFDlDGTLiDs~~-~~~~a~~~~~~~~g~~~g~~~~~~~~~~~-~~G~~~~~~~~~~~~~--------~~~~~~ 89 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDP-LHYYAFREMLQEINFNGGVPITEEFFVEN-IAGKHNEDIALGLFPD--------DLERGL 89 (248)
T ss_pred CccCEEEEcCCCccCcCHH-HHHHHHHHHHHHhccccCCCCCHHHHHHH-cCCCCHHHHHHHHcCc--------chhhHH
Confidence 5689999999999999997 4788999999998754 22333322211 1455555443322111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCC
Q 020874 153 QFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR 232 (320)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~ 232 (320)
++ .....+.|.+... ....++||+.++|+.|+++|++++|+||+....++..++.+++..+|+ .++++++++.
T Consensus 90 ~~----~~~~~~~y~~~~~-~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd--~iv~~~~~~~ 162 (248)
T PLN02770 90 KF----TDDKEALFRKLAS-EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQ--AVIIGSECEH 162 (248)
T ss_pred HH----HHHHHHHHHHHHH-hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCc--EEEecCcCCC
Confidence 11 1222233333222 237889999999999999999999999999999999999999999998 8999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc-cCCCeeccCCCCCh
Q 020874 233 KKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF-LNADAVFDCIGDPP 301 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~-~~a~~vi~~l~el~ 301 (320)
+||+|++|..+++++|++|++++||||+..|+++|+++|+.+|++.+++...... ..++++++++.|+.
T Consensus 163 ~KP~p~~~~~a~~~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~~ 232 (248)
T PLN02770 163 AKPHPDPYLKALEVLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDPK 232 (248)
T ss_pred CCCChHHHHHHHHHhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhhH
Confidence 9999999999999999999999999999999999999999999999886433222 47999999999943
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=8.7e-32 Score=228.47 Aligned_cols=209 Identities=22% Similarity=0.216 Sum_probs=163.5
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
++++|+||+||||+|+.. .+..+|.+++++++... .+.+.+... .|.+.......+ .+...+.+.
T Consensus 2 ~~~~viFD~DGTL~ds~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~--~G~~~~~~~~~~-----------~~~~~~~~~ 66 (214)
T PRK13288 2 KINTVLFDLDGTLINTNE-LIISSFLHTLKTYYPNQ-YKREDVLPF--IGPSLHDTFSKI-----------DESKVEEMI 66 (214)
T ss_pred CccEEEEeCCCcCccCHH-HHHHHHHHHHHHhCCCC-CCHHHHHHH--hCcCHHHHHHhc-----------CHHHHHHHH
Confidence 579999999999999997 47889999999987642 233333333 455544333221 122223333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
..+.. .+..... ....++||+.++|+.|+++|++++|+||+....+...++.+++..+|+ .+++++++...||
T Consensus 67 ~~~~~----~~~~~~~-~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~--~i~~~~~~~~~Kp 139 (214)
T PRK13288 67 TTYRE----FNHEHHD-ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFD--VVITLDDVEHAKP 139 (214)
T ss_pred HHHHH----HHHHhhh-hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhcee--EEEecCcCCCCCC
Confidence 32222 2221111 226789999999999999999999999999999999999999999998 8899999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhHHh
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l~~ 306 (320)
+|+.|+++++++|++|++++||||+.+|+++|+++|+.+|++.|+....+.+ .+++++++++.|+.+.+.+
T Consensus 140 ~p~~~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~~ 212 (214)
T PRK13288 140 DPEPVLKALELLGAKPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVGD 212 (214)
T ss_pred CcHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999987665443 4699999999998886644
No 8
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=6e-31 Score=228.97 Aligned_cols=213 Identities=20% Similarity=0.249 Sum_probs=158.7
Q ss_pred ceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHH-----------HHhhcCCCCCCC
Q 020874 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-----------YFNKTGWPEKAP 145 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------~~~~~~~~~~~~ 145 (320)
+++|+||+||||+|+....+..+|.++++++|.+. +.+.+... .|.+...... +....+. .
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 73 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQI--TLEEARGP--MGLGKWDHIRALLKMPAVAERWRAKFGR----L 73 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCc--cHHHHHHh--cCccHHHHHHHHhcCHHHHHHHHHHhCC----C
Confidence 68999999999999865335678999999988753 33333322 4444322211 1122221 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccc-cceeE
Q 020874 146 SDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EKIQI 224 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~-~~~~i 224 (320)
...+...++...+.. .+.+.... ...++||+.++|+.|+++|++++|+||+....++.+++.+++..+| + .+
T Consensus 74 ~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d--~i 146 (253)
T TIGR01422 74 PTEADIEAIYEAFEP----LQLAKLAE-YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPD--YN 146 (253)
T ss_pred CCHHHHHHHHHHHHH----HHHHHHHh-cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCc--eE
Confidence 123333333333332 22222222 2788999999999999999999999999999999999999888875 5 78
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC--------------------
Q 020874 225 FAGDVVPRKKPDPAIYTLAASTLGVD-PSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA-------------------- 283 (320)
Q Consensus 225 ~~~d~~~~~KP~~~~~~~~~~~~g~~-~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~-------------------- 283 (320)
+++++++..||+|++|..+++++|+. |++++||||+.+|+++|+++|+.+|+|.+|+..
T Consensus 147 i~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~ 226 (253)
T TIGR01422 147 VTTDDVPAGRPAPWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARR 226 (253)
T ss_pred EccccCCCCCCCHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHH
Confidence 89999999999999999999999995 999999999999999999999999999998762
Q ss_pred ---cccc--cCCCeeccCCCCChhhH
Q 020874 284 ---EEDF--LNADAVFDCIGDPPEER 304 (320)
Q Consensus 284 ---~~~~--~~a~~vi~~l~el~~~l 304 (320)
...+ .++|++++++.|+...+
T Consensus 227 ~~~~~~l~~~~~~~v~~~~~el~~~~ 252 (253)
T TIGR01422 227 AEATARLKAAGAHYVIDTLAELPAVI 252 (253)
T ss_pred HHHHHHHHhcCCCEehhcHHHHHHhh
Confidence 1233 46999999999987643
No 9
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.98 E-value=8.5e-31 Score=229.66 Aligned_cols=217 Identities=21% Similarity=0.283 Sum_probs=160.2
Q ss_pred CCCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHH-HHHH---------H-hhcCCCC
Q 020874 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKER-MTAY---------F-NKTGWPE 142 (320)
Q Consensus 74 ~~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~---------~-~~~~~~~ 142 (320)
|+++|+||||+||||+|+....+..+|.++++++|.+. +.+.+... .|.+... +... + ...+.
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~g~-- 74 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEI--TLEEARGP--MGLGKWDHIRALLKMPRVAARWQAVFGR-- 74 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHhcHHHHHHHHHHhCC--
Confidence 46789999999999999865334678999999988753 33333222 4433322 1111 1 11221
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccc-cc
Q 020874 143 KAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EK 221 (320)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~-~~ 221 (320)
....+...++...+... +.+.+. ....++||+.++|+.|+++|++++|+||+....+...++.++...++ +
T Consensus 75 --~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d- 146 (267)
T PRK13478 75 --LPTEADVDALYAAFEPL----QIAKLA-DYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPD- 146 (267)
T ss_pred --CCCHHHHHHHHHHHHHH----HHHHHh-hcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCce-
Confidence 11233333333333322 222222 22688999999999999999999999999999999999988776665 5
Q ss_pred eeEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC-----------------
Q 020874 222 IQIFAGDVVPRKKPDPAIYTLAASTLGVD-PSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA----------------- 283 (320)
Q Consensus 222 ~~i~~~d~~~~~KP~~~~~~~~~~~~g~~-~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~----------------- 283 (320)
.++++++++..||+|++|..+++++|+. +++++||||+.+|+++|+++|+.+|+|.+|+..
T Consensus 147 -~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~ 225 (267)
T PRK13478 147 -HVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELA 225 (267)
T ss_pred -EEEcCCcCCCCCCChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHH
Confidence 7888999899999999999999999996 699999999999999999999999999998763
Q ss_pred ------cccc--cCCCeeccCCCCChhhHH
Q 020874 284 ------EEDF--LNADAVFDCIGDPPEERF 305 (320)
Q Consensus 284 ------~~~~--~~a~~vi~~l~el~~~l~ 305 (320)
.+.+ .+++++++++.|+.+.+.
T Consensus 226 ~~~~~~~~~l~~~~a~~vi~~~~~l~~~l~ 255 (267)
T PRK13478 226 ARRERARARLRAAGAHYVIDTIADLPAVIA 255 (267)
T ss_pred HHHHHHHHHHHHcCCCeehhhHHHHHHHHH
Confidence 1222 479999999999987664
No 10
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.98 E-value=1.4e-30 Score=221.95 Aligned_cols=211 Identities=19% Similarity=0.213 Sum_probs=162.5
Q ss_pred ceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHH-HHhhcCCCCCCCCCHHHHHHHH
Q 020874 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
+|+|+||+||||+|+... +..++.++++++|.... ...+... ..|.....+.+ ++...+. .....+++.
T Consensus 1 ~k~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~~--~~~~~~~-~~g~~~~~~~~~~~~~~~~------~~~~~~~~~ 70 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGL-VYRALRQAVTAAGLSPT--PEEVQSA-WMGQSKIEAIRALLALDGA------DEAEAQAAF 70 (220)
T ss_pred CcEEEEecCCCeeccCch-HHHHHHHHHHHcCCCCC--HHHHHHh-hcCCCHHHHHHHHHhccCC------CHHHHHHHH
Confidence 579999999999999984 88899999999887643 2223221 24555444433 3333332 122233333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc--ccccceeEEeCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~--~~~~~~~i~~~d~~~~~ 233 (320)
..+ .+.+.+.+.....+++||+.++|+.|+++|++++++||+....+...++.+++. .+|+ .+++++++...
T Consensus 71 ~~~----~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~--~i~~~~~~~~~ 144 (220)
T TIGR03351 71 ADF----EERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD--AVVCPSDVAAG 144 (220)
T ss_pred HHH----HHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC--EEEcCCcCCCC
Confidence 333 333333333334689999999999999999999999999999999999999877 7888 88999998899
Q ss_pred CCCHHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCCcccc--cCCCeeccCCCCChhh
Q 020874 234 KPDPAIYTLAASTLGVD-PSSCVVVEDSTIGLAAAKAAGMKC-IVTKSSYTAEEDF--LNADAVFDCIGDPPEE 303 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~-~~~~v~VGDs~~Di~~A~~aG~~~-v~v~~g~~~~~~~--~~a~~vi~~l~el~~~ 303 (320)
||+|++|..+++++|+. |++++||||+.+|+++|+++|+.+ |++.+|......+ ..++++++++.|+...
T Consensus 145 KP~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 218 (220)
T TIGR03351 145 RPAPDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPAL 218 (220)
T ss_pred CCCHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHh
Confidence 99999999999999997 799999999999999999999999 9998887665544 3689999998877653
No 11
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.97 E-value=9.9e-31 Score=221.82 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=159.3
Q ss_pred EEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHH-HHhhcCCCCCCCCCHHHHHHHHHHH
Q 020874 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERKQFIASL 158 (320)
Q Consensus 80 viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (320)
||||+||||+|+... +..++..+++++|... .+.+.+... .|.+...+.+ ++...+. ....+...++...
T Consensus 1 viFD~DGTL~Ds~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~- 71 (213)
T TIGR01449 1 VLFDLDGTLVDSAPD-IAAAVNMALAALGLPP-ATLARVIGF--IGNGVPVLMERVLAWAGQ----EPDAQRVAELRKL- 71 (213)
T ss_pred CeecCCCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hcccHHHHHHHHhhcccc----ccChHHHHHHHHH-
Confidence 699999999999874 6778999999998763 334434333 4555443333 3332221 1122223333332
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHH
Q 020874 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPA 238 (320)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~ 238 (320)
+.+.|.+...+ ...++||+.++|+.|+++|++++|+||+....++..++++++..+|+ .++++++++..||+|+
T Consensus 72 ---~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~Kp~p~ 145 (213)
T TIGR01449 72 ---FDRHYEEVAGE-LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFS--VLIGGDSLAQRKPHPD 145 (213)
T ss_pred ---HHHHHHHhccc-cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCc--EEEecCCCCCCCCChH
Confidence 23333332221 36789999999999999999999999999999999999999888888 7888998899999999
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChh
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPE 302 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~ 302 (320)
+|..+++++|++|++++||||+.+|+++|+++|+++|++.+|+...+.+ ..++++++++.|+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~ 211 (213)
T TIGR01449 146 PLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPP 211 (213)
T ss_pred HHHHHHHHcCCChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHh
Confidence 9999999999999999999999999999999999999999987654443 469999999988765
No 12
>PRK11587 putative phosphatase; Provisional
Probab=99.97 E-value=2.3e-30 Score=220.28 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=151.6
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
++++|+|||||||+|+... +..+|.++++++|++. ..+... ..|.+.....+.+.. + ...+...
T Consensus 2 ~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~----~~~~~~-~~g~~~~~~~~~~~~-~------~~~~~~~--- 65 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPA-VERAWSNWADRHGIAP----DEVLNF-IHGKQAITSLRHFMA-G------ASEAEIQ--- 65 (218)
T ss_pred CCCEEEEcCCCCcCcCHHH-HHHHHHHHHHHcCCCH----HHHHHH-HcCCCHHHHHHHHhc-c------CCcHHHH---
Confidence 5799999999999999874 7889999999999753 122221 135555444333321 1 1112111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
+.+... ..+.... .....++||+.++|+.|+++|++++++||+....+...++..+. .+++ .+++++++...||
T Consensus 66 ~~~~~~--~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l-~~~~--~i~~~~~~~~~KP 139 (218)
T PRK11587 66 AEFTRL--EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL-PAPE--VFVTAERVKRGKP 139 (218)
T ss_pred HHHHHH--HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC-CCcc--EEEEHHHhcCCCC
Confidence 111110 0111111 12368899999999999999999999999988877778887765 4455 6888888888999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChh
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPE 302 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~ 302 (320)
+|+.|..+++++|+.|++++||||+..|+++|+++|+.+|++.++... .....++++++++.|+..
T Consensus 140 ~p~~~~~~~~~~g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~ 205 (218)
T PRK11587 140 EPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTV 205 (218)
T ss_pred CcHHHHHHHHHcCCCcccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhheeE
Confidence 999999999999999999999999999999999999999999877543 334579999999999754
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.97 E-value=5.9e-30 Score=218.42 Aligned_cols=212 Identities=25% Similarity=0.423 Sum_probs=161.2
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHH-hhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYF-NKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (320)
.++++|+||+||||+|+... +..++.++++++|..... ...+... .|.......+.+ ...++.. .. ..+
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~---~~---~~~ 74 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPL-WDRAELDVMASLGVDISR-REELPDT--LGLRIDQVVDLWYARQPWNG---PS---RQE 74 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHH-HHHHHHHHHHHCCCCCCH-HHHHHHh--hCCCHHHHHHHHHHhcCCCC---CC---HHH
Confidence 46899999999999999874 778899999999876432 1222222 454444443333 2222210 01 112
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~ 233 (320)
+...+.+. +.+... ....++||+.++|+.|+++|++++++||+....++..++.+++..+|+ .++++++++.+
T Consensus 75 ~~~~~~~~----~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 147 (222)
T PRK10826 75 VVQRIIAR----VISLIE-ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFD--ALASAEKLPYS 147 (222)
T ss_pred HHHHHHHH----HHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhccc--EEEEcccCCCC
Confidence 22222222 222212 226899999999999999999999999999999999999999999998 78899999999
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcc-cccCCCeeccCCCCChhh
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEE-DFLNADAVFDCIGDPPEE 303 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~-~~~~a~~vi~~l~el~~~ 303 (320)
||+|++|+.+++++|+.|++++||||+.+|+++|+++|+++|++.++....+ ....+++++.++.|+...
T Consensus 148 Kp~~~~~~~~~~~~~~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 148 KPHPEVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA 218 (222)
T ss_pred CCCHHHHHHHHHHcCCCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence 9999999999999999999999999999999999999999999998766543 335689999999998653
No 14
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.97 E-value=8.4e-30 Score=214.86 Aligned_cols=200 Identities=25% Similarity=0.308 Sum_probs=155.6
Q ss_pred EEEeCCCccccCCccchHHHHHHHHHHc-CCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 020874 80 LLFDCDGVLVDTEKDGHRISFNDTFKEK-ELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (320)
Q Consensus 80 viFDlDGTL~d~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (320)
|+|||||||+|+.. .+..++.++++++ +.+ ..+.+.+... .|...+.+.+. .+.. ......+
T Consensus 1 iiFDlDGTL~Ds~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~g~~~~~~~~~---~~~~------~~~~~~~---- 63 (205)
T TIGR01454 1 VVFDLDGVLVDSFA-VMREAFAIAYREVVGDG-PAPFEEYRRH--LGRYFPDIMRI---MGLP------LEMEEPF---- 63 (205)
T ss_pred CeecCcCccccCHH-HHHHHHHHHHHHhcCCC-CCCHHHHHHH--hCccHHHHHHH---cCCC------HHHHHHH----
Confidence 69999999999998 4888999999874 654 2344444433 45554444332 2221 1111111
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHH
Q 020874 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPA 238 (320)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~ 238 (320)
..... .. .....++||+.++|+.|+++|++++++||+....+...++.+++..+|+ .+++++++..+||+|+
T Consensus 64 ~~~~~----~~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~ 135 (205)
T TIGR01454 64 VRESY----RL--AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFD--HVIGSDEVPRPKPAPD 135 (205)
T ss_pred HHHHH----Hh--hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhhee--eEEecCcCCCCCCChH
Confidence 11111 11 1237899999999999999999999999999999999999998888888 7888888889999999
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhH
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEER 304 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l 304 (320)
+|+.+++++|+++++++||||+.+|+.+|+++|+++|++.||+.....+ ..++++++++.|+...+
T Consensus 136 ~~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~ 203 (205)
T TIGR01454 136 IVREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC 203 (205)
T ss_pred HHHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999998776554 46999999998876543
No 15
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.6e-29 Score=221.52 Aligned_cols=218 Identities=24% Similarity=0.327 Sum_probs=163.6
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
.++|+|+|||||||+|+... +..++..+++++|.... ..+.+... .|.+...+...+-...+. .........+++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~~-~~~~~~~~--~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~ 85 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPD-LAAAVDRMLLELGRPPA-GLEAVRHW--VGNGAPVLVRRALAGSID-HDGVDDELAEQA 85 (272)
T ss_pred ccCCEEEEcCCCccccCHHH-HHHHHHHHHHHcCCCCC-CHHHHHHH--hChhHHHHHHHHhccccc-ccCCCHHHHHHH
Confidence 56899999999999999984 78899999999988643 22323222 455544433322111010 001122333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCC
Q 020874 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (320)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~K 234 (320)
.+.+.+ .+.... ....++||+.++|+.|+++|++++++||++...+...++++++..+|+ .++++++++..|
T Consensus 86 ~~~~~~----~~~~~~--~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~--~i~~~d~~~~~K 157 (272)
T PRK13223 86 LALFME----AYADSH--ELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFR--WIIGGDTLPQKK 157 (272)
T ss_pred HHHHHH----HHHhcC--cCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCe--EEEecCCCCCCC
Confidence 333222 222211 125789999999999999999999999999999999999988888888 788999888999
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhHH
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEERF 305 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l~ 305 (320)
|+|++|+.+++++|+++++++||||+.+|+++|+++|+++++|.+|+...+.+ ..++++++++.||.+.+.
T Consensus 158 p~p~~~~~~~~~~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~~~ 230 (272)
T PRK13223 158 PDPAALLFVMKMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPGCA 230 (272)
T ss_pred CCcHHHHHHHHHhCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999987765544 479999999988875543
No 16
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.3e-29 Score=221.24 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=161.3
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQF 154 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
..+++|+|||||||+|+... +..++.++++++|.+. .+.+.+..+ .|.....+.+ ..++ ..+..+++
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~~-~~~~~~~~~--~g~~~~~i~~---~~~~------~~~~~~~~ 126 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPT-VVAIANAHAPDFGYDP-IDERDYAQL--RQWSSRTIVR---RAGL------SPWQQARL 126 (273)
T ss_pred hhcCEEEECCcCccccCHHH-HHHHHHHHHHHCCCCC-CCHHHHHHH--hCccHHHHHH---HcCC------CHHHHHHH
Confidence 35789999999999999874 7778999999998863 234444433 4444443333 2222 22333333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCC
Q 020874 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK 234 (320)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~K 234 (320)
.+.+.+ .+.+.. ...+++||+.++|+.|+++|++++|+||+....+..+++.+++..+|+ .+++++.+ +
T Consensus 127 ~~~~~~----~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~--~vi~~~~~---~ 195 (273)
T PRK13225 127 LQRVQR----QLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFS--VVQAGTPI---L 195 (273)
T ss_pred HHHHHH----HHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheE--EEEecCCC---C
Confidence 333322 222222 226889999999999999999999999999999999999999888888 66666654 3
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhHHhhh
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l~~~~ 308 (320)
++++.|..+++++|++|++++||||+.+|+++|+++|+.+|++.+|+.....+ ..++++++++.||.+.+.+++
T Consensus 196 ~k~~~~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~~~~ 271 (273)
T PRK13225 196 SKRRALSQLVAREGWQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVTQLM 271 (273)
T ss_pred CCHHHHHHHHHHhCcChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999998776544 479999999999998776554
No 17
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.97 E-value=5.3e-29 Score=212.45 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=112.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
..++||+.++|+.|+++|++++++||++...+...++.+++..+|+ .++++++++..||+|++|+.+++++|++++++
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 170 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFD--AVITSEEEGVEKPHPKIFYAALKRLGVKPEEA 170 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhcc--EEEEeccCCCCCCCHHHHHHHHHHcCCChhhE
Confidence 6899999999999999999999999999989999999999888998 78999999999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCCccc---ccCCCeeccCCCCC
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVTKSSYTAEED---FLNADAVFDCIGDP 300 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~---~~~a~~vi~~l~el 300 (320)
|||||+. +|+.+|+++|+.+|++.++...... ...++++++++.|+
T Consensus 171 ~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 171 VMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred EEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 9999998 8999999999999999987654422 24588999988775
No 18
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=214.94 Aligned_cols=190 Identities=36% Similarity=0.506 Sum_probs=144.7
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
++++|||||||||+|++. .+..+|.++++++|+.... +..... .|.........+........ +......+..
T Consensus 1 ~~~avIFD~DGvLvDse~-~~~~a~~~~~~~~g~~~~~--~~~~~~--~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 73 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEP-LHARAWLEALKEYGIEISD--EEIREL--HGGGIARIIDLLRKLAAGED-PADLAELERL- 73 (221)
T ss_pred CCcEEEEcCCCCcCcchH-HHHHHHHHHHHHcCCCCCH--HHHHHH--HCCChHHHHHHHHHHhcCCc-ccCHHHHHHH-
Confidence 468999999999999998 5899999999999987542 223322 44433333333333211100 0011111111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
..+.+... ....++.||+.++|+.|+++|++++++|+..+..++..|+.+++.++|+ .+++++++..+||
T Consensus 74 ------~~~~~~~~--~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~--~~v~~~dv~~~KP 143 (221)
T COG0637 74 ------LYEAEALE--LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFD--VIVTADDVARGKP 143 (221)
T ss_pred ------HHHHHHhh--hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcc--hhccHHHHhcCCC
Confidence 11111111 1237899999999999999999999999999999999999999999999 8899999999999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
+|++|..+++++|++|++||+|+|+.+++++|++|||.+|++..++.
T Consensus 144 ~Pd~yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 144 APDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred CCHHHHHHHHHcCCChHHeEEEecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999999999999999999999999987444
No 19
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=9.8e-29 Score=211.47 Aligned_cols=217 Identities=25% Similarity=0.311 Sum_probs=165.2
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHH-HHhhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (320)
.++++|+||+||||+|+... +..++..++++++.... +...+... .|.+...+.. .+...+ .....+..++
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~--~g~~~~~~~~~~~~~~~----~~~~~~~~~~ 75 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPD-LAAAVNAALAALGLPPA-GEERVRTW--VGNGADVLVERALTWAG----REPDEELLEK 75 (226)
T ss_pred CcCcEEEEcCCcccccCHHH-HHHHHHHHHHHCCCCCC-CHHHHHHH--hCccHHHHHHHHHhhcc----CCccHHHHHH
Confidence 56899999999999999874 67789999999887632 33333333 4444433332 222211 1122333333
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~ 233 (320)
....+. +.+..... ....++||+.++|+.|++.|++++++||+....+..+++.++...+|+ .+++++.++..
T Consensus 76 ~~~~~~----~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~~~~~~~~~~~ 148 (226)
T PRK13222 76 LRELFD----RHYAENVA-GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFS--VVIGGDSLPNK 148 (226)
T ss_pred HHHHHH----HHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCcc--EEEcCCCCCCC
Confidence 333332 22322221 126789999999999999999999999999999999999998888887 78888888899
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChhhHHh
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~~l~~ 306 (320)
||+|++|+.++++++++++++++|||+.+|+++|+++|+.+|++.+|....... ..++++++++.|+...+..
T Consensus 149 kp~~~~~~~~~~~~~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~~ 223 (226)
T PRK13222 149 KPDPAPLLLACEKLGLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLGL 223 (226)
T ss_pred CcChHHHHHHHHHcCCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987644333 4799999999999887754
No 20
>PLN02940 riboflavin kinase
Probab=99.97 E-value=6.2e-29 Score=227.07 Aligned_cols=210 Identities=27% Similarity=0.344 Sum_probs=163.0
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHH-HHHHHhhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKER-MTAYFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
..+++|+||+||||+|+.. .+..++..+++++|... +.+..... .|.+... +..++...+.. .. .++
T Consensus 9 ~~ik~VIFDlDGTLvDt~~-~~~~a~~~~~~~~G~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~----~~---~~~ 76 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDG-IVSDVLKAFLVKYGKQW--DGREAQKI--VGKTPLEAAATVVEDYGLP----CS---TDE 76 (382)
T ss_pred ccCCEEEECCcCcCCcCHH-HHHHHHHHHHHHcCCCC--CHHHHHHh--cCCCHHHHHHHHHHHhCCC----CC---HHH
Confidence 4589999999999999998 48889999999998753 33333332 4554443 34444444432 11 122
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHH-HhcCcccccceeEEeCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPR 232 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~-~~~~~~~~~~~~i~~~d~~~~ 232 (320)
+...+.+. +.+.+. ...++||+.++|+.|+++|++++|+||+....+...++ .+++..+|+ .+++++++..
T Consensus 77 ~~~~~~~~----~~~~~~--~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd--~ii~~d~v~~ 148 (382)
T PLN02940 77 FNSEITPL----LSEQWC--NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFS--VIVGGDEVEK 148 (382)
T ss_pred HHHHHHHH----HHHHHc--cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCC--EEEehhhcCC
Confidence 22222222 222222 26789999999999999999999999999998888887 667788898 8999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhH
Q 020874 233 KKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEER 304 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l 304 (320)
+||+|++|..+++++|+.|+++|||||+..|+++|+++|+.+|++.+++........++++++++.|+...-
T Consensus 149 ~KP~p~~~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~ 220 (382)
T PLN02940 149 GKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEK 220 (382)
T ss_pred CCCCHHHHHHHHHHcCCChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHH
Confidence 999999999999999999999999999999999999999999999988665545567999999999986544
No 21
>PRK09449 dUMP phosphatase; Provisional
Probab=99.96 E-value=1.3e-28 Score=210.45 Aligned_cols=212 Identities=13% Similarity=0.158 Sum_probs=148.9
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHH----
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEER---- 151 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---- 151 (320)
++|+|+||+||||+|.. ...++.++++.+|+... .+.+..+...+.+ +...+.... ......
T Consensus 2 ~~k~iiFDlDGTLid~~---~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~ 67 (224)
T PRK09449 2 KYDWILFDADETLFHFD---AFAGLQRMFSRYGVDFT--AEDFQDYQAVNKP---LWVDYQNGA------ITALQLQHTR 67 (224)
T ss_pred CccEEEEcCCCchhcch---hhHHHHHHHHHhCCCCc--HHHHHHHHHHHHH---HHHHHHcCC------CCHHHHHHHH
Confidence 57999999999999843 34578888888887642 3323222112211 111111110 111111
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC
Q 020874 152 -KQFIASL---HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (320)
Q Consensus 152 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 227 (320)
..+.+.+ .....+.|.+.+.. ...++||+.++|+.|+ +|++++++||+....++..++.+++..+|+ .++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~ 143 (224)
T PRK09449 68 FESWAEKLNVTPGELNSAFLNAMAE-ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFD--LLVIS 143 (224)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhh-cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcC--EEEEE
Confidence 0111110 01122233333332 2678999999999999 579999999999999999999999889998 88899
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDP-SSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~-~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
++++..||+|++|..+++++|+.+ ++++||||+. +|+++|+++|+.+|++.++.........++++++++.||.+.+.
T Consensus 144 ~~~~~~KP~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 144 EQVGVAKPDVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred CccCCCCCCHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHHh
Confidence 999999999999999999999865 7999999998 69999999999999998543322222368999999988877543
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.96 E-value=1.1e-28 Score=210.44 Aligned_cols=209 Identities=21% Similarity=0.274 Sum_probs=151.2
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHH-HHHHHhhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKER-MTAYFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
+++++|+||+||||+|+.. .+..+|.++++++|..... .+.+... .|..... +..++...+.+ ...+ +
T Consensus 2 ~~~~~viFD~DGTL~d~~~-~~~~a~~~~~~~~g~~~~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~----~~~~---~ 70 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEV-ICSRAYVTMFAEFGITLSL-EEVFKRF--KGVKLYEIIDIISKEHGVT----LAKA---E 70 (221)
T ss_pred CCCCEEEECCCCCCCCChH-HHHHHHHHHHHHcCCCCCH-HHHHHHh--cCCCHHHHHHHHHHHhCCC----CCHH---H
Confidence 4589999999999999987 4678899999999876431 2222222 3333333 33334444432 1122 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~ 233 (320)
+...+.+...+ .. .....++||+.++|+.| +++++|+||+....+...++.+++..+|+. .++++++++..
T Consensus 71 ~~~~~~~~~~~----~~-~~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~~~F~~-~v~~~~~~~~~ 141 (221)
T PRK10563 71 LEPVYRAEVAR----LF-DSELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGMLHYFPD-KLFSGYDIQRW 141 (221)
T ss_pred HHHHHHHHHHH----HH-HccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChHHhCcc-eEeeHHhcCCC
Confidence 22222222211 11 12378899999999999 489999999999999999999988888863 47777788899
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhh
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEE 303 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~ 303 (320)
||+|++|..+++++|+.|+++|||||+..|+++|+++|+++|++..+.........++.+++++.||.+.
T Consensus 142 KP~p~~~~~a~~~~~~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 211 (221)
T PRK10563 142 KPDPALMFHAAEAMNVNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPEL 211 (221)
T ss_pred CCChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875444322223456667777776653
No 23
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.96 E-value=8.3e-28 Score=205.41 Aligned_cols=211 Identities=15% Similarity=0.239 Sum_probs=152.5
Q ss_pred ceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHH-HHHHH
Q 020874 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEE-RKQFI 155 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (320)
+|+|+||+||||+|+... +..++.++++++|.... ......+...+ .. ....+.. +. ..... ..+.+
T Consensus 1 ~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~~~--~~~~~~~~~~~--~~-~~~~~~~-~~-----~~~~~~~~~~~ 68 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA-EALALRLLFEDQGIPLT--EDMFAQYKEIN--QG-LWRAYEE-GK-----ITKDEVVNTRF 68 (224)
T ss_pred CCEEEEcCcCcccccchH-HHHHHHHHHHHhCCCcc--HHHHHHHHHHh--HH-HHHHHHc-CC-----CCHHHHHHHHH
Confidence 579999999999999984 67788999988887643 22221111111 11 1111111 10 01111 01111
Q ss_pred HHHH---------HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEe
Q 020874 156 ASLH---------KRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA 226 (320)
Q Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~ 226 (320)
..+. +...+.|...+.. ...++||+.++|+.|+++ ++++++||+....++..++.+++..+|+ .+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd--~i~~ 144 (224)
T TIGR02254 69 SALLKEYNTEADEALLNQKYLRFLEE-GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFD--DIFV 144 (224)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhc-cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcC--EEEE
Confidence 1100 0122233333222 267899999999999999 9999999999999999999999889998 8999
Q ss_pred CCCCCCCCCCHHHHHHHHHHc-CCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhh
Q 020874 227 GDVVPRKKPDPAIYTLAASTL-GVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEE 303 (320)
Q Consensus 227 ~d~~~~~KP~~~~~~~~~~~~-g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~ 303 (320)
+++++..||+|++|+.+++++ |+.|+++|||||+. +|+++|+++|+.+|++.++.........++++++++.||...
T Consensus 145 ~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 145 SEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI 223 (224)
T ss_pred cCccCCCCCCHHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence 999999999999999999999 99999999999998 799999999999999998765543345788999998887654
No 24
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.96 E-value=7.1e-28 Score=226.28 Aligned_cols=214 Identities=21% Similarity=0.228 Sum_probs=158.8
Q ss_pred CCCceEEEEeCCCccccCCccchHHHHHHHHHHcCC----CCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHH
Q 020874 74 SVLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKEL----GVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEE 149 (320)
Q Consensus 74 ~~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 149 (320)
.+|+++|||||||||+|+... +..+|.+++++++. ......+.+... .|.+.....+.+... ...+
T Consensus 238 ~~m~k~vIFDlDGTLiDs~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~~~~~l~~~-------~~~~ 307 (459)
T PRK06698 238 NEMLQALIFDMDGTLFQTDKI-LELSLDDTFDHLRSLQLWDTVTPIDKYREI--MGVPLPKVWEALLPD-------HSLE 307 (459)
T ss_pred HHhhhheeEccCCceecchhH-HHHHHHHHHHHHhhhcccCCCCCHHHHHHH--cCCChHHHHHHHhhh-------cchh
Confidence 467899999999999999985 78899999988741 111122333333 566555544333211 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC
Q 020874 150 ERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV 229 (320)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~ 229 (320)
..++... ...+.+.+.+.....+++||+.++|+.|+++|++++|+||+....+...++.+++..+|+ .++++++
T Consensus 308 ~~~~~~~----~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~--~i~~~d~ 381 (459)
T PRK06698 308 IREQTDA----YFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVT--ETFSIEQ 381 (459)
T ss_pred HHHHHHH----HHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcc--eeEecCC
Confidence 1122212 222222222222346899999999999999999999999999999999999998888998 7888887
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHh
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~ 306 (320)
+. .||+|+.|..++++++ ++++|||||+.+|+.+|+++|+.+|++.+++.....+..+|++++++.|+...+..
T Consensus 382 v~-~~~kP~~~~~al~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~ 455 (459)
T PRK06698 382 IN-SLNKSDLVKSILNKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILST 455 (459)
T ss_pred CC-CCCCcHHHHHHHHhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHHH
Confidence 64 4778889999998875 68999999999999999999999999999877666667899999999988776543
No 25
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=2.1e-27 Score=196.95 Aligned_cols=184 Identities=28% Similarity=0.447 Sum_probs=138.8
Q ss_pred EEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcH-HHHHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 020874 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGK-ERMTAYFNKTGWPEKAPSDEEERKQFIAS 157 (320)
Q Consensus 79 ~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (320)
+|+||+||||+|+... +..+|.++++.+|.+. ..+..... .|.+. +.+..++...+.. ..++...++.+.
T Consensus 1 ~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~~--~~~~~~~~--~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 71 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY-HYLAWKALADELGIPF--DEEFNESL--KGVSREDSLERILDLGGKK----YSEEEKEELAER 71 (185)
T ss_pred CeEEcCCCccccChHH-HHHHHHHHHHHcCCCC--CHHHHHHh--cCCChHHHHHHHHHhcCCC----CCHHHHHHHHHH
Confidence 4899999999999984 7889999999998863 33333322 34333 3344444544431 234444444444
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCH
Q 020874 158 LHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237 (320)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~ 237 (320)
+...+.+.+.. . ....++||+.++|+.|+++|++++++||+.. ....++.+++..+|+ .++++++++..||+|
T Consensus 72 ~~~~~~~~~~~-~--~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~--~~~~~~~~~~~kp~p 144 (185)
T TIGR01990 72 KNDYYVELLKE-L--TPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFD--AIVDPAEIKKGKPDP 144 (185)
T ss_pred HHHHHHHHHHh-c--CCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCc--EEEehhhcCCCCCCh
Confidence 33333322211 1 1247899999999999999999999998653 457889998888998 788899899999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 238 AIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 238 ~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
++|+.+++++|++|+++|||||+.+|+++|+++||++|+|.
T Consensus 145 ~~~~~~~~~~~~~~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 145 EIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred HHHHHHHHHcCCCHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 99999999999999999999999999999999999999873
No 26
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.96 E-value=4e-27 Score=195.28 Aligned_cols=184 Identities=30% Similarity=0.421 Sum_probs=139.0
Q ss_pred ceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHH-HHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 77 PSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERM-TAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
+++|+||+||||+|+.. .+..++.++++++|.... ....... .|...... ..++...+. ....+...++.
T Consensus 1 ~~~iiFD~DGTL~ds~~-~~~~~~~~~~~~~g~~~~--~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 71 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAP-LHAQAWKHLADKYGIEFD--KQYNTSL--GGLSREDILRAILKLRKP----GLSLETIHQLA 71 (185)
T ss_pred CCeEEEcCCCcccCChH-HHHHHHHHHHHHcCCCCC--HHHHHHc--CCCCHHHHHHHHHHhcCC----CCCHHHHHHHH
Confidence 47999999999999997 478899999999887632 2222211 34443333 333333211 12233333332
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKP 235 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP 235 (320)
+...+.+.+.+......++||+.++|+.|+++|++++++||+ ..++.+++.+++..+|+ .++++++++..||
T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~--~v~~~~~~~~~kp 143 (185)
T TIGR02009 72 ----ERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFD--AIVDADEVKEGKP 143 (185)
T ss_pred ----HHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCC--EeeehhhCCCCCC
Confidence 223334444433334789999999999999999999999998 56888999998888898 7888888889999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
+|++|+++++++|+.+++++||||+..|+++|+++|+++|+|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 144 HPETFLLAAELLGVSPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred ChHHHHHHHHHcCCCHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 999999999999999999999999999999999999999874
No 27
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.95 E-value=1.5e-27 Score=200.06 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=100.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++||+.++|+.|+++|++++++||++...+...++.+++..+|+ .++++++++..||+|++|+.+++++|+.|+++
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd--~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD--AVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh--eeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 6789999999999999999999999999999999999998888898 89999999999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
+||||+.+|+.+|+++|+.+||+.++..
T Consensus 169 ~~vgD~~~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 169 LFVASNPWDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred EEEeCCHHHHHHHHHCCCcEEEecCCCC
Confidence 9999999999999999999999987543
No 28
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.95 E-value=1.5e-27 Score=203.36 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=110.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
..++||+.++|+.|+++|++++++||+....++..++.+++..+|+ .++++++++..||+|++|+.+++++|++|+++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLD--LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCC--EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 7889999999999999999999999999999999999998888998 88999999999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeE-EEEcCCCCCcccccCCCeeccCCCCChhhHHhh
Q 020874 255 VVVEDSTIGLAAAKAAGMKC-IVTKSSYTAEEDFLNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~-v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~ 307 (320)
+||||+..|+++|+++||.+ ++|.++..... ..+..+..+++++.+.+..+
T Consensus 170 l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 221 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIRYCLGVTNPDSGIA--EKQYQRHPSLNDYRRLIPSL 221 (224)
T ss_pred EEEcCCHHHHHHHHHcCCeEEEEEeCCCCCcc--chhccCCCcHHHHHHHhhhh
Confidence 99999999999999999985 66776554433 23444556666666655443
No 29
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.95 E-value=1.5e-26 Score=192.30 Aligned_cols=183 Identities=25% Similarity=0.352 Sum_probs=138.1
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHH-HHhhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTA-YFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (320)
.++++|+||+||||+|+.. .+..+|.++++++|.+.. ....... .|.....+.. ++...+. ....+.
T Consensus 3 ~~~~~viFD~DGTLiDs~~-~~~~a~~~~~~~~g~~~~--~~~~~~~--~g~~~~~~~~~~~~~~~~----~~~~~~--- 70 (188)
T PRK10725 3 DRYAGLIFDMDGTILDTEP-THRKAWREVLGRYGLQFD--EQAMVAL--NGSPTWRIAQAIIELNQA----DLDPHA--- 70 (188)
T ss_pred CcceEEEEcCCCcCccCHH-HHHHHHHHHHHHcCCCCC--HHHHHHh--cCCCHHHHHHHHHHHhCC----CCCHHH---
Confidence 4579999999999999988 488899999999987532 2322222 4555444333 3332221 111221
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK 233 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~ 233 (320)
+.. ...+.+.+.... ...++|| .++|+.|++. ++++|+||+....++..++.+++..+|+ .++++++++..
T Consensus 71 ~~~----~~~~~~~~~~~~-~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd--~i~~~~~~~~~ 141 (188)
T PRK10725 71 LAR----EKTEAVKSMLLD-SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFD--AVVAADDVQHH 141 (188)
T ss_pred HHH----HHHHHHHHHHhc-cCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHce--EEEehhhccCC
Confidence 111 111222222222 2567886 5899999875 8999999999999999999999989998 89999999999
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
||+|++|+++++++|++|+++|||||+.+|+++|+++|+++|++.
T Consensus 142 KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 142 KPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CCChHHHHHHHHHcCCCHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 999999999999999999999999999999999999999999875
No 30
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.95 E-value=1.3e-26 Score=199.63 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=104.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
..++||+.++|+.|++. ++++++||++.. ++.+++..+|+ .++++++++..||+|++|..+++++|++|+++
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd--~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFE--FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhc--eeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 68899999999999975 999999998765 36677888898 88889988999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCCc----ccccCCCeeccCCCCChhhH
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVTKSSYTAE----EDFLNADAVFDCIGDPPEER 304 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~----~~~~~a~~vi~~l~el~~~l 304 (320)
+||||+. .|+.+|+++|+.+||+..+.... .....++++|+++.||.+.|
T Consensus 184 ~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred EEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhhC
Confidence 9999995 99999999999999998765432 11134888899988877653
No 31
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.95 E-value=3.5e-26 Score=192.49 Aligned_cols=183 Identities=20% Similarity=0.311 Sum_probs=130.1
Q ss_pred eEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchh--HHHHHHH------------hcCcHHH-----HHHHHhhc
Q 020874 78 SALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVD--LYGELLK------------IGGGKER-----MTAYFNKT 138 (320)
Q Consensus 78 k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~------------~g~~~~~-----~~~~~~~~ 138 (320)
|+|+||+||||+|+... +..++.++++++|+....+.. .+..... .|..... +...+...
T Consensus 1 k~viFDlDGTL~d~~~~-~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP-VGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRA 79 (203)
T ss_pred CeEEEecCCceeeeCCC-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999874 778999999999887532110 1111100 0222211 12222222
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccc
Q 020874 139 GWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER 218 (320)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~ 218 (320)
+. ...+...+.... .+..........++||+.++|+.|+++|++++|+||+... +...++.+++..+
T Consensus 80 ~~-----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~ 146 (203)
T TIGR02252 80 GV-----PDPESFEKIFEE-------LYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEY 146 (203)
T ss_pred CC-----CCchhHHHHHHH-------HHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHh
Confidence 21 011111111111 1111111122578999999999999999999999998765 5788898888888
Q ss_pred ccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEE
Q 020874 219 AEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIV 276 (320)
Q Consensus 219 ~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~ 276 (320)
|+ .++++++++..||+|++|+++++++|++|++++||||+. +|+++|+++|+.+||
T Consensus 147 fd--~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 147 FD--FVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred cc--eEEeecccCCCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 98 888998899999999999999999999999999999998 899999999999985
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=1.3e-25 Score=227.63 Aligned_cols=211 Identities=31% Similarity=0.401 Sum_probs=159.9
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHh-hcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (320)
.++++|+|||||||+|+.. .+..+|.++++++|++. +.+.+... .|.....+...+. ..+++. ...+ +
T Consensus 73 ~~ikaVIFDlDGTLiDS~~-~~~~a~~~~~~~~G~~i--t~e~~~~~--~G~~~~~~~~~~~~~~~l~~---~~~~---~ 141 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEE-PSRRAAVDVFAEMGVEV--TVEDFVPF--MGTGEANFLGGVASVKGVKG---FDPD---A 141 (1057)
T ss_pred CCCCEEEECCCCCeEeChH-HHHHHHHHHHHHcCCCC--CHHHHHHH--hCCCHHHHHHHHHHhcCCCC---CCHH---H
Confidence 4689999999999999998 48889999999998764 34444333 5555555443322 222211 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc-ccccceeEEeCCCCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVVPR 232 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~-~~~~~~~i~~~d~~~~ 232 (320)
..+.+.+.+.+.+.. .....++||+.++|+.|+++|++++|+||.....++..++.+++. .+|+ .+++++++..
T Consensus 142 ~~~~~~~~~~~~~~~---~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd--~iv~~~~~~~ 216 (1057)
T PLN02919 142 AKKRFFEIYLEKYAK---PNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD--AIVSADAFEN 216 (1057)
T ss_pred HHHHHHHHHHHHhhh---cccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC--EEEECccccc
Confidence 112222211121111 111347999999999999999999999999999999999999775 6788 8999999999
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc--cCCCeeccCCCCChh
Q 020874 233 KKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF--LNADAVFDCIGDPPE 302 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~--~~a~~vi~~l~el~~ 302 (320)
.||+|++|+++++++|+.|+++|||||+..|+++|+++||.+|++.++... +.+ .+++++++++.|+..
T Consensus 217 ~KP~Pe~~~~a~~~lgv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~-~~L~~~~a~~vi~~l~el~~ 287 (1057)
T PLN02919 217 LKPAPDIFLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSE-EILKDAGPSLIRKDIGNISL 287 (1057)
T ss_pred CCCCHHHHHHHHHHcCcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCH-HHHhhCCCCEEECChHHCCH
Confidence 999999999999999999999999999999999999999999999998643 333 478999999999853
No 33
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=192.91 Aligned_cols=128 Identities=21% Similarity=0.258 Sum_probs=115.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++|++.+.|+.|+++ ++++++||+....+...++++|+.++|+ .++++++++..||+|++|+.+++++|++|+++
T Consensus 98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd--~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 98 LPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFD--AVFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred CccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhh--eEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 78899999999999999 9999999999999999999999999999 89999999999999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCCc-ccccCCCeeccCCCCChhhHH
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVTKSSYTAE-EDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~-~~~~~a~~vi~~l~el~~~l~ 305 (320)
+||||+. +|+.+|+++||++||++.+.... +....+++.+.++.|+.+.+.
T Consensus 175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~ 227 (229)
T COG1011 175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLE 227 (229)
T ss_pred EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHh
Confidence 9999999 78899999999999998776543 222568888899888887654
No 34
>PLN02811 hydrolase
Probab=99.94 E-value=3e-25 Score=189.02 Aligned_cols=203 Identities=24% Similarity=0.301 Sum_probs=147.9
Q ss_pred CCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHH-HhhcCCCCCCCCCHHHHHHHHHHHHHHH
Q 020874 84 CDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAY-FNKTGWPEKAPSDEEERKQFIASLHKRK 162 (320)
Q Consensus 84 lDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (320)
|||||+|+.. .+..+|.++++++|+.. ..+.+..+ .|.....+... +...++... ...+...+....
T Consensus 1 ~DGTL~Ds~~-~~~~a~~~~~~~~g~~~--~~~~~~~~--~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 68 (220)
T PLN02811 1 MDGLLLDTEK-FYTEVQEKILARYGKTF--DWSLKAKM--MGKKAIEAARIFVEESGLSDS--LSPEDFLVEREA----- 68 (220)
T ss_pred CCCcceecHH-HHHHHHHHHHHHcCCCC--CHHHHHHc--cCCCHHHHHHHHHHHhCCCCC--CCHHHHHHHHHH-----
Confidence 7999999997 48889999999999863 33333332 56555444333 333333210 112222111111
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH-hcCcccccceeEEeCC--CCCCCCCCHHH
Q 020874 163 TELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGPERAEKIQIFAGD--VVPRKKPDPAI 239 (320)
Q Consensus 163 ~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~-~~~~~~~~~~~i~~~d--~~~~~KP~~~~ 239 (320)
.+...... ..++||+.++|+.|+++|++++|+||+........+.. .++..+|+ .+++++ +++..||+|++
T Consensus 69 --~~~~~~~~--~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~--~i~~~~~~~~~~~KP~p~~ 142 (220)
T PLN02811 69 --MLQDLFPT--SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMH--HVVTGDDPEVKQGKPAPDI 142 (220)
T ss_pred --HHHHHHhh--CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCC--EEEECChhhccCCCCCcHH
Confidence 11111112 67899999999999999999999999987655544333 34566787 788888 88889999999
Q ss_pred HHHHHHHcC---CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhH
Q 020874 240 YTLAASTLG---VDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEER 304 (320)
Q Consensus 240 ~~~~~~~~g---~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l 304 (320)
|..+++++| +.|+++|||||+..|+++|+++|+++|++.++.........++++++++.|+...-
T Consensus 143 ~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~ 210 (220)
T PLN02811 143 FLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEE 210 (220)
T ss_pred HHHHHHHhCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHH
Confidence 999999997 99999999999999999999999999999988765555568999999999876543
No 35
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.94 E-value=1.9e-25 Score=182.87 Aligned_cols=174 Identities=28% Similarity=0.426 Sum_probs=130.9
Q ss_pred EEEeCCCccccCCccchHHHHHH-HHHHcCCCCCCchhHHHHHHHhcCcHHH-HHHHHhhcCCCCCCCCCHHHHHHHHHH
Q 020874 80 LLFDCDGVLVDTEKDGHRISFND-TFKEKELGVTWDVDLYGELLKIGGGKER-MTAYFNKTGWPEKAPSDEEERKQFIAS 157 (320)
Q Consensus 80 viFDlDGTL~d~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (320)
|+||+||||+|+.. .+..++.. +++.++.. .+.+.++.. .+..... +..++...+ ..
T Consensus 1 iifD~dgtL~d~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP-AIFRALQRLALEEFGLE--ISAEELREL--FGKSYEEALERLLERFG---------ID------- 59 (176)
T ss_dssp EEEESBTTTEEHHH-HHHHHHHHHHHHHTTHH--HHHHHHHHH--TTSHHHHHHHHHHHHHH---------HH-------
T ss_pred cEEECCCCcEeCHH-HHHHHHHHHHHHHhCCC--CCHHHHHHH--hCCCHHHHHHHhhhccc---------hh-------
Confidence 79999999999887 36667776 46666654 222222222 2333322 222222210 01
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCH
Q 020874 158 LHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP 237 (320)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~ 237 (320)
.....+.+.+.......+++||+.++|+.|+++|++++++||++...+...++++++..+|+ .++++++.+..||++
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~--~i~~~~~~~~~Kp~~ 136 (176)
T PF13419_consen 60 -PEEIQELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFD--EIISSDDVGSRKPDP 136 (176)
T ss_dssp -HHHHHHHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCS--EEEEGGGSSSSTTSH
T ss_pred -HHHHHHHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccc--cccccchhhhhhhHH
Confidence 11122222222222347899999999999999999999999999999999999998888898 899999999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 238 AIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 238 ~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
++|+.+++++|+.|++++||||+..|+++|+++|+.+|+|
T Consensus 137 ~~~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 137 DAYRRALEKLGIPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 9999999999999999999999999999999999999986
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.93 E-value=2.5e-25 Score=188.43 Aligned_cols=106 Identities=25% Similarity=0.305 Sum_probs=91.4
Q ss_pred CCCCChhHHHHHHHHHHcCCeEEEEcCCchHH--HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA--VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 174 ~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~--~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
...++||+.++|+.|+++|++++++||+.... ....+..+++..+|+ .++++++++..||+|++|+.+++++|+.|
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd--~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFD--AVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCC--EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 47789999999999999999999999986543 223333445567888 78888888889999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~ 281 (320)
++++||||+..|+.+|+++|+.+|++.++.
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~i~v~~~~ 199 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITTIKVSDEE 199 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEEEEECCHH
Confidence 999999999999999999999999987643
No 37
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.92 E-value=1.3e-24 Score=180.00 Aligned_cols=98 Identities=27% Similarity=0.358 Sum_probs=91.3
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCC----CCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR----KKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~----~KP~~~~~~~~~~~~g~~ 250 (320)
..++||+.++|+.|+ .+++++||++...+...++.+++..+|+ .++++++++. .||+|++|+++++++|++
T Consensus 83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd--~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 157 (184)
T TIGR01993 83 LKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFD--GIFCFDTANPDYLLPKPSPQAYEKALREAGVD 157 (184)
T ss_pred CCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhC--eEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence 678999999999997 4799999999999999999999888998 8888888776 599999999999999999
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 251 PSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 251 ~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
|++++||||+..|+++|+++|+++|+|
T Consensus 158 ~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 158 PERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred ccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999999975
No 38
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.92 E-value=9.2e-24 Score=176.13 Aligned_cols=207 Identities=29% Similarity=0.397 Sum_probs=158.2
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHh-hcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFN-KTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (320)
..+.+++||+||||+|++. .+..+++..+.++|...+++ .... ..|....++.+.+- .. ..+-..++
T Consensus 8 ~~~~~~lfD~dG~lvdte~-~y~~~~~~~~~~ygk~~~~~--~~~~--~mG~~~~eaa~~~~~~~-------~dp~s~ee 75 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTED-LYTEAWQELLDRYGKPYPWD--VKVK--SMGKRTSEAARLFVKKL-------PDPVSREE 75 (222)
T ss_pred cceeeEEEecCCcEEecHH-HHHHHHHHHHHHcCCCChHH--HHHH--HcCCCHHHHHHHHHhhc-------CCCCCHHH
Confidence 4567999999999999998 48889999999999855443 3322 36666666666554 22 12333444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhc-CcccccceeEEe--CCCC
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL-GPERAEKIQIFA--GDVV 230 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~-~~~~~~~~~i~~--~d~~ 230 (320)
+.....+...+.+ .. ..+.||+.++++.|+.+|++++++|+.++...+.+++++. ....|. .++. +.++
T Consensus 76 ~~~e~~~~~~~~~----~~--~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~--~~v~~d~~~v 147 (222)
T KOG2914|consen 76 FNKEEEEILDRLF----MN--SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFS--HVVLGDDPEV 147 (222)
T ss_pred HHHHHHHHHHHhc----cc--cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcC--CCeecCCccc
Confidence 4444333333333 22 6788999999999999999999999999999999999885 444565 3444 5678
Q ss_pred CCCCCCHHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCCh
Q 020874 231 PRKKPDPAIYTLAASTLGVDP-SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPP 301 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~~~g~~~-~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~ 301 (320)
..+||+|++|..+++++|..+ +.+++|+|++..+++|++|||.+|+++...-.......++.+++++.+..
T Consensus 148 ~~gKP~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T KOG2914|consen 148 KNGKPDPDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFK 219 (222)
T ss_pred cCCCCCchHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccC
Confidence 899999999999999999999 99999999999999999999999999884444444467888888877754
No 39
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.92 E-value=3e-24 Score=179.89 Aligned_cols=190 Identities=14% Similarity=0.135 Sum_probs=128.4
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHH-HHHHHHhhcCCCCCCCCCHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKE-RMTAYFNKTGWPEKAPSDEEERKQF 154 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (320)
|+|+|+||+||||+|+.. ++..+++++|++. +.+... .|.+.. .+...+. ...+...++
T Consensus 1 m~k~viFDlDGTLiD~~~-----~~~~~~~~~g~~~----~~~~~~--~g~~~~~~~~~~~~---------~~~~~~~~~ 60 (197)
T PHA02597 1 MKPTILTDVDGVLLSWQS-----GLPYFAQKYNIPT----DHILKM--IQDERFRDPGELFG---------CDQELAKKL 60 (197)
T ss_pred CCcEEEEecCCceEchhh-----ccHHHHHhcCCCH----HHHHHH--HhHhhhcCHHHHhc---------ccHHHHHHH
Confidence 478999999999999554 4677888887642 222222 222211 1222211 112233333
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccc--eeEEeCCCCCC
Q 020874 155 IASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK--IQIFAGDVVPR 232 (320)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~--~~i~~~d~~~~ 232 (320)
.+.+.. +... ....++||+.++|+.|++. ++++++||++.......++.+++..+|+. ..+++++.
T Consensus 61 ~~~~~~-------~~~~-~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~--- 128 (197)
T PHA02597 61 IEKYNN-------SDFI-RYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGH--- 128 (197)
T ss_pred hhhhhH-------HHHH-HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEecc---
Confidence 333321 1111 1267899999999999987 46888899877666656666655544421 15666655
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc--CCeEEEEcCCCCCcccccCCCeeccCCCCCh
Q 020874 233 KKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA--GMKCIVTKSSYTAEEDFLNADAVFDCIGDPP 301 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a--G~~~v~v~~g~~~~~~~~~a~~vi~~l~el~ 301 (320)
.||+|++|..+++++| +++++||||+..|+++|+++ ||++|+++|++. +....+++.+.++.|+.
T Consensus 129 ~~~kp~~~~~a~~~~~--~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 195 (197)
T PHA02597 129 DESKEKLFIKAKEKYG--DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIE 195 (197)
T ss_pred CcccHHHHHHHHHHhC--CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHh
Confidence 3678899999999999 88899999999999999999 999999999865 33345668888888765
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.92 E-value=8.7e-24 Score=177.27 Aligned_cols=107 Identities=24% Similarity=0.344 Sum_probs=95.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh-cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~-~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
..++||+.++|+.|+++|++++++||++.......+... ++..+|+ .++++++++..||+|++|+.+++++|+.|++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd--~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~ 160 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD--HIYLSQDLGMRKPEARIYQHVLQAEGFSAAD 160 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC--EEEEecccCCCCCCHHHHHHHHHHcCCChhH
Confidence 468999999999999999999999999887766655443 4566787 8899999999999999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
++||||+..|+++|+++|+.+|++.++...
T Consensus 161 ~l~vgD~~~di~aA~~aG~~~i~~~~~~~~ 190 (199)
T PRK09456 161 AVFFDDNADNIEAANALGITSILVTDKQTI 190 (199)
T ss_pred eEEeCCCHHHHHHHHHcCCEEEEecCCccH
Confidence 999999999999999999999998765443
No 41
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.92 E-value=1.5e-23 Score=175.54 Aligned_cols=185 Identities=17% Similarity=0.097 Sum_probs=127.0
Q ss_pred EEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCc-------HHHHHHHHhhcCCCCCCCCCHHHH
Q 020874 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGG-------KERMTAYFNKTGWPEKAPSDEEER 151 (320)
Q Consensus 79 ~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 151 (320)
+|+|||||||+|+... +..++.++++++|.. ..+.+.+..+...+.. ...+..++....... .......
T Consensus 2 ~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 77 (197)
T TIGR01548 2 ALVLDMDGVMADVSQS-YRRAIIDTVEHFGGV-SVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSER--VRDAPTL 77 (197)
T ss_pred ceEEecCceEEechHH-HHHHHHHHHHHHcCC-CCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchh--ccCCccH
Confidence 6899999999999984 888999999999743 2334445444332221 122333333211000 0011122
Q ss_pred HHHHHHHHHHHHHHH--HHHHH--hcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC
Q 020874 152 KQFIASLHKRKTELF--MVLIE--KKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG 227 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 227 (320)
+++.+.+.+.+.... ..... .....+.+++.++|+.|++.|++++|+||++...++..++.+++..+|+ .++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~--~~~~~ 155 (197)
T TIGR01548 78 EAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFP--VQIWM 155 (197)
T ss_pred HHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCC--EEEee
Confidence 222222222211100 00000 0012455667999999999999999999999999999999999889998 78888
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a 270 (320)
+++.. ||+|+.|..+++++|+++++++||||+.+|+++|+++
T Consensus 156 ~~~~~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 156 EDCPP-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred cCCCC-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence 88776 9999999999999999999999999999999999875
No 42
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=2e-23 Score=172.54 Aligned_cols=100 Identities=36% Similarity=0.553 Sum_probs=92.4
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++||+.++|+.|+++|++++++||+.... ...+.++++..+|+ .++++++++.+||+|+.|+.+++++|++|+++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~--~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFD--VVIFSGDVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCC--EEEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 5789999999999999999999999999887 66666688888888 78888888999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcCCeEEEE
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
+||||+..|+++|+++|+.+|+|
T Consensus 161 ~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 161 LFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEcCCHHHHHHHHHcCCEEEeC
Confidence 99999999999999999999975
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.90 E-value=5.3e-23 Score=165.43 Aligned_cols=154 Identities=26% Similarity=0.374 Sum_probs=117.1
Q ss_pred EEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH
Q 020874 79 ALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFIASL 158 (320)
Q Consensus 79 ~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (320)
+|+||+||||+|+.. .+..+|.+++++++.. .+.+... .|...+.+..+.. . ++.+
T Consensus 1 ~iifD~DGTL~d~~~-~~~~~~~~~~~~~~~~----~~~~~~~--~g~~~~~~~~~~~-------------~----~~~~ 56 (154)
T TIGR01549 1 AILFDIDGTLVDSSF-AIRRAFEETLEEFGED----FQALKAL--RGLAEELLYRIAT-------------S----FEEL 56 (154)
T ss_pred CeEecCCCcccccHH-HHHHHHHHHHHHhccc----HHHHHHH--HccChHHHHHHHH-------------H----HHHH
Confidence 489999999999986 4788899999988742 2222221 2222222221110 0 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHH
Q 020874 159 HKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPA 238 (320)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~ 238 (320)
.. + . .....+||+.++|+.|+++|++++++||+....+...++.+ +..+|+ .++++++.+ .||+|+
T Consensus 57 ~~-----~----~-~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~--~i~~~~~~~-~Kp~~~ 122 (154)
T TIGR01549 57 LG-----Y----D-AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFD--LILGSDEFG-AKPEPE 122 (154)
T ss_pred hC-----c----c-hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCc--EEEecCCCC-CCcCHH
Confidence 10 1 1 12456799999999999999999999999999999999987 667777 788888877 999999
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAG 271 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG 271 (320)
+|.++++++|+++ +++||||+..|+++|+++|
T Consensus 123 ~~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 123 IFLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HHHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 9999999999999 9999999999999999987
No 44
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.89 E-value=1.4e-22 Score=166.47 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=99.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCch---------------HHHHHHHHHhcCcccccceeEEeC-----------C
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----------D 228 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~---------------~~~~~~l~~~~~~~~~~~~~i~~~-----------d 228 (320)
+.++||+.++|+.|+++|++++++||++. ..+...++.++.. ++ .++.+ +
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~--~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LD--GIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--cc--EEEECCCCCcccccccC
Confidence 57789999999999999999999999884 2334455554332 44 33322 2
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCCcccc-cCCCeeccCCCCCh
Q 020874 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKC-IVTKSSYTAEEDF-LNADAVFDCIGDPP 301 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~-v~v~~g~~~~~~~-~~a~~vi~~l~el~ 301 (320)
+...+||+|++|..+++++|+++++++||||+.+|+++|+++|+.+ +++.+|....... ..||++++++.||.
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 4557899999999999999999999999999999999999999998 7999987654444 46999999999875
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.89 E-value=4e-22 Score=169.79 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=95.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce-----eEEeCC---CCCCCCCCHHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD---VVPRKKPDPAIYTLAAST 246 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~-----~i~~~d---~~~~~KP~~~~~~~~~~~ 246 (320)
.+++||+.++|+.|+++|++++++||+....+..+++.++...++... ..+++. ....++|++.+|+.++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 163 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLRK 163 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHHH
Confidence 678999999999999999999999999999999999998877766421 111221 112356799999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCC
Q 020874 247 LGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIG 298 (320)
Q Consensus 247 ~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~ 298 (320)
+|+++++++||||+.+|+.+|+++|+..++ + ........|++++.+.+
T Consensus 164 ~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~---~~~~~~~~a~~~i~~~~ 211 (219)
T TIGR00338 164 EGISPENTVAVGDGANDLSMIKAAGLGIAF-N---AKPKLQQKADICINKKD 211 (219)
T ss_pred cCCCHHHEEEEECCHHHHHHHHhCCCeEEe-C---CCHHHHHhchhccCCCC
Confidence 999999999999999999999999998654 1 22333357888887654
No 46
>PRK06769 hypothetical protein; Validated
Probab=99.89 E-value=1.1e-22 Score=166.20 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=101.3
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH--------HHHHHHHHhcCcccccceeEE-eCCCCCCCCCCHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK--------AVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDPAIYTLAAS 245 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~--------~~~~~l~~~~~~~~~~~~~i~-~~d~~~~~KP~~~~~~~~~~ 245 (320)
..++||+.++|++|+++|++++++||.... .....++.++...++. ... ++++++..||+|++|.++++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYL--CPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEE--CcCCCCCCCCCCCCCHHHHHHHHH
Confidence 567899999999999999999999998641 1233355544332221 111 35566789999999999999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc------ccc--cCCCeeccCCCCChhhHH
Q 020874 246 TLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE------EDF--LNADAVFDCIGDPPEERF 305 (320)
Q Consensus 246 ~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~------~~~--~~a~~vi~~l~el~~~l~ 305 (320)
++|++|++++||||+..|+++|+++|+.+|++.+++... +.+ ..++++++++.|+.+.++
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~ 172 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWIL 172 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHHh
Confidence 999999999999999999999999999999999987542 222 368999999998877653
No 47
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.89 E-value=1.8e-22 Score=166.68 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=102.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCch---------------HHHHHHHHHhcCcccccceeEEeC-----CCCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-----DVVPRKK 234 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~---------------~~~~~~l~~~~~~~~~~~~~i~~~-----d~~~~~K 234 (320)
+.++||+.++|+.|+++|++++|+||++. ..+...++.++. .|+ .++.+ ++++..|
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~--~i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLD--GIYYCPHHPEDGCDCRK 103 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccc--eEEECCCCCCCCCcCCC
Confidence 56789999999999999999999999863 334445665543 354 45432 4567899
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc-cCC--CeeccCCCCChhhHH
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF-LNA--DAVFDCIGDPPEERF 305 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~-~~a--~~vi~~l~el~~~l~ 305 (320)
|+|++|..+++++|+.+++++||||+.+|+.+|+++|+.+|++.+|....... ..+ +++++++.|+.+.+.
T Consensus 104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~ 177 (181)
T PRK08942 104 PKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALK 177 (181)
T ss_pred CCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887543333 346 899999988877654
No 48
>PLN02954 phosphoserine phosphatase
Probab=99.89 E-value=5.4e-22 Score=169.54 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=128.2
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHH-HHHHHhhcCCCCCCCCCHHHHHH
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKER-MTAYFNKTGWPEKAPSDEEERKQ 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 153 (320)
+++|+|+||+||||+|... +..+++.+|.+..+. +....+.....+..+ +...+.... ...+
T Consensus 10 ~~~k~viFDfDGTL~~~~~------~~~~~~~~g~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~---- 72 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEG------IDELAEFCGAGEAVA-EWTAKAMGGSVPFEEALAARLSLFK------PSLS---- 72 (224)
T ss_pred ccCCEEEEeCCCcccchHH------HHHHHHHcCChHHHH-HHHHHHHCCCCCHHHHHHHHHHHcC------CCHH----
Confidence 4578999999999999753 577888887642211 112221111112221 111122110 0011
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc--ccccceeE------E
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP--ERAEKIQI------F 225 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~--~~~~~~~i------~ 225 (320)
.+.+.+......++||+.++|+.|+++|++++|+|++....++.+++.+++. .+|..... +
T Consensus 73 -----------~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~ 141 (224)
T PLN02954 73 -----------QVEEFLEKRPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEY 141 (224)
T ss_pred -----------HHHHHHHHccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcE
Confidence 1111111122568999999999999999999999999999999999998765 24431111 1
Q ss_pred eCCC----CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcc-cccCCCeeccCCCCC
Q 020874 226 AGDV----VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEE-DFLNADAVFDCIGDP 300 (320)
Q Consensus 226 ~~d~----~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~-~~~~a~~vi~~l~el 300 (320)
.+.. ....++|++.++.+++++|. ++++||||+.+|+++|+++|+.++...+++...+ ....++++++++.|+
T Consensus 142 ~g~~~~~~~~~~~~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el 219 (224)
T PLN02954 142 AGFDENEPTSRSGGKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDL 219 (224)
T ss_pred ECccCCCcccCCccHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHH
Confidence 1111 12357789999999998885 6899999999999999998888665443333322 234699999998887
Q ss_pred hhh
Q 020874 301 PEE 303 (320)
Q Consensus 301 ~~~ 303 (320)
.+.
T Consensus 220 ~~~ 222 (224)
T PLN02954 220 IEV 222 (224)
T ss_pred HHh
Confidence 653
No 49
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.88 E-value=9.2e-22 Score=164.64 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=136.0
Q ss_pred CCceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHH-
Q 020874 75 VLPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQ- 153 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (320)
+.+|+|+||++|||+..... ....+..+.+.+|++..-. .....+. .....+.......+.... .....++..
T Consensus 5 ~~iravtfD~~~tLl~~~~~-~~~~y~~i~~~~gl~~~~~--~~~~~~~--~~~~~~~~~~p~~~~~~g-~l~~~~ww~~ 78 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATLPP-VMEVYCEIAEAYGLEYDDS--LIETIFR--KDFKKMSEKGPFFGLYSG-ELTLSQWWPK 78 (237)
T ss_pred cceEEEEEeCCCceeecCCc-cHHHHHHHHHHhCCCCCHH--HHhHhhh--HHHHhhcccCCcccccCC-cccHHHHHHH
Confidence 56899999999999986654 5667899999999884322 1111110 000000000000111000 001111111
Q ss_pred HHHH--------HHHHHHHHHH-HHHHh---cCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccc
Q 020874 154 FIAS--------LHKRKTELFM-VLIEK---KLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK 221 (320)
Q Consensus 154 ~~~~--------~~~~~~~~~~-~~~~~---~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~ 221 (320)
++.. +.+...+.|. ..+.. ..+.+.+++.++++.||+.|..++++||.+.+.. ..+..+++..+||
T Consensus 79 lv~~~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~~fD- 156 (237)
T KOG3085|consen 79 LVESTFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSAYFD- 156 (237)
T ss_pred HHHHHhccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHHhhh-
Confidence 1111 1111111111 11111 1366788999999999999999999999987754 8888888889999
Q ss_pred eeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc
Q 020874 222 IQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF 287 (320)
Q Consensus 222 ~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~ 287 (320)
.++.+.+++..||+|++|+.+++++|+.|++||||||+. ||+++|+++||.++.|-.........
T Consensus 157 -~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~ 222 (237)
T KOG3085|consen 157 -FVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKEL 222 (237)
T ss_pred -hhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhh
Confidence 788888899999999999999999999999999999999 89999999999999987655444433
No 50
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.87 E-value=7.4e-23 Score=168.15 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=81.3
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
..++||+.++|+ +++|+||++...+...++++++..+|+ .++++++++..||+|++|+.+++++|++|+++
T Consensus 89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd--~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 89 LPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFD--RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred CCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHh--hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 679999999998 378999999999999999999888998 68899998999999999999999999999999
Q ss_pred EEEecCHhhHHHHHHc
Q 020874 255 VVVEDSTIGLAAAKAA 270 (320)
Q Consensus 255 v~VGDs~~Di~~A~~a 270 (320)
+||||+..|+.+|+++
T Consensus 160 l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 160 LMVAAHQWDLIGARKF 175 (175)
T ss_pred EeEecChhhHHHHhcC
Confidence 9999999999999864
No 51
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=7.2e-21 Score=159.74 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=85.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC----------CCCHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----------KPDPAIYTLAA 244 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~----------KP~~~~~~~~~ 244 (320)
..++||+.++|+.|+++|++++|+||+....++.+++.++...++. ..+..++.+.. +++++.++.++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYS--NELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEE--EEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 6899999999999999999999999999999999999998766655 33333333322 23446889999
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 020874 245 STLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 245 ~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~ 279 (320)
+++|+++++++||||+.+|+++|+.+|+.++....
T Consensus 157 ~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~ 191 (201)
T TIGR01491 157 RELNPSLTETVAVGDSKNDLPMFEVADISISLGDE 191 (201)
T ss_pred HHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence 99999999999999999999999999998887443
No 52
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.87 E-value=5e-21 Score=161.42 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=97.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh---cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~---~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
.++|||+.++|+.|+++|++++|+||++...+...++.. ++..+|+ .++.. . ...||+|+.|..+++++|++|
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd~-~-~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFDT-T-VGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEEe-C-cccCCCHHHHHHHHHHhCcCh
Confidence 579999999999999999999999999998888888775 3444565 45532 2 337999999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcc-cc-cCCCeeccCCCCC
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEE-DF-LNADAVFDCIGDP 300 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~-~~-~~a~~vi~~l~el 300 (320)
++++||||+..|+++|+++||.+|++.++.+... .. ..-+-++.+|+++
T Consensus 170 ~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T TIGR01691 170 REILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNAV 220 (220)
T ss_pred hHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCcccC
Confidence 9999999999999999999999999887654321 11 1115566777653
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.87 E-value=1.3e-21 Score=155.81 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=86.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCch---------------HHHHHHHHHhcCcccccceeEE-eCCCCCCCCCCHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIF-AGDVVPRKKPDPA 238 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~---------------~~~~~~l~~~~~~~~~~~~~i~-~~d~~~~~KP~~~ 238 (320)
..++||+.++|+.|+++|++++++||++. ..+...++.+++.......... .++..+..||+|+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 46789999999999999999999999873 4566677777654211100111 1355567899999
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g 280 (320)
+|+.+++++|+++++++||||+..|+++|+++|+++||+.+|
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 999999999999999999999999999999999999999765
No 54
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.86 E-value=1.1e-20 Score=168.18 Aligned_cols=123 Identities=20% Similarity=0.152 Sum_probs=98.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce-----eEEeCC---CCCCCCCCHHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGD---VVPRKKPDPAIYTLAAST 246 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~-----~i~~~d---~~~~~KP~~~~~~~~~~~ 246 (320)
.+++||+.++|+.|++.|++++|+|++....++.++++++....+... ..+++. ++..+|||++.++.++++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~ 259 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQE 259 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHH
Confidence 789999999999999999999999999988888888888665433210 222222 223578999999999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChh
Q 020874 247 LGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPE 302 (320)
Q Consensus 247 ~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~ 302 (320)
+|++++++++|||+.||+.|++.||+..++ +..+...+.|+++++ ..+|..
T Consensus 260 lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~----nAkp~Vk~~Ad~~i~-~~~l~~ 310 (322)
T PRK11133 260 YEIPLAQTVAIGDGANDLPMIKAAGLGIAY----HAKPKVNEQAQVTIR-HADLMG 310 (322)
T ss_pred cCCChhhEEEEECCHHHHHHHHHCCCeEEe----CCCHHHHhhCCEEec-CcCHHH
Confidence 999999999999999999999999998886 345555678999986 445544
No 55
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.84 E-value=3.8e-21 Score=155.65 Aligned_cols=107 Identities=12% Similarity=0.043 Sum_probs=96.2
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC-chHHHHHHHHHhcCc---------ccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGP---------ERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~~~---------~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
..+|||+.++|+.|+++|++++++||+ ....++..++.+++. .+|+ .++++++....||.+.+++.+.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd--~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFD--DRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhce--eeeeccCCchHHHHHHHHHHhh
Confidence 678999999999999999999999998 888889999999877 8888 7888887777788888888887
Q ss_pred HHc--CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 245 STL--GVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 245 ~~~--g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
+.+ |++|++++||||+..|+++|+++|+.+|++.+|...
T Consensus 122 ~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~~ 162 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMDK 162 (174)
T ss_pred hcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCccH
Confidence 777 899999999999999999999999999999887653
No 56
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.84 E-value=2.3e-20 Score=158.81 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=98.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc--cccceeEEeCCCCCCCCCCHHH----------HHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE--RAEKIQIFAGDVVPRKKPDPAI----------YTL 242 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~--~~~~~~i~~~d~~~~~KP~~~~----------~~~ 242 (320)
.+++||+.++|+.|+++|++++|+||+....++.+++.+ +.. ++.....+.++.+...||+|.. ...
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 689999999999999999999999999999999999987 433 2211134556666667777654 357
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc--ccccCCCeeccCCCCChhhHHhh
Q 020874 243 AASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE--EDFLNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 243 ~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~--~~~~~a~~vi~~l~el~~~l~~~ 307 (320)
++++++..+.+++||||+.+|+.+|++||+.++ . +.... .....+.+.++++.|+.+.|.++
T Consensus 152 ~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~-~~l~~~~~~~~~~~~~~~~f~ei~~~l~~~ 215 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--R-DFLITKCEELGIPYTPFETFHDVQTELKHL 215 (219)
T ss_pred HHHHhccCCCCEEEEeCCHHHHHHHHHCCccee--H-HHHHHHHHHcCCCccccCCHHHHHHHHHHH
Confidence 888999999999999999999999999999444 2 21111 12334777889999888877554
No 57
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.84 E-value=9.8e-20 Score=153.42 Aligned_cols=131 Identities=13% Similarity=-0.034 Sum_probs=94.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC--CCCCCCCHHHHHHHHHHcCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV--VPRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~--~~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
.+++||+.++|+.|+++ ++++++||+....++..++++++..+|.....+..+. .+..+++|.....++++++..++
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~ 145 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGY 145 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCC
Confidence 78899999999999999 9999999999999999999998777765322121111 12222333344556666777778
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCe-eccCCCCChhhHHhhhh
Q 020874 253 SCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA-VFDCIGDPPEERFDLAF 309 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~-vi~~l~el~~~l~~~~~ 309 (320)
+++||||+.+|+.+++++|+... + +.........+++ +++++.|+.+.+.+++-
T Consensus 146 ~~v~iGDs~~D~~~~~aa~~~v~-~--~~~~~~~~~~~~~~~~~~~~el~~~l~~~~~ 200 (205)
T PRK13582 146 RVIAAGDSYNDTTMLGEADAGIL-F--RPPANVIAEFPQFPAVHTYDELLAAIDKASA 200 (205)
T ss_pred eEEEEeCCHHHHHHHHhCCCCEE-E--CCCHHHHHhCCcccccCCHHHHHHHHHHHHh
Confidence 99999999999999999998554 2 2222111234554 89999999888777663
No 58
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.83 E-value=1.4e-19 Score=153.77 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=87.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC----chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS----NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~----~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
..+++++.++|+.|+++|++++++||. .+..++.+++.+++..+|+ .+++++.....||++. .+++++|+
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~--~i~~~d~~~~~Kp~~~---~~l~~~~i- 186 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNP--VIFAGDKPGQYQYTKT---QWIQDKNI- 186 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchhee--EEECCCCCCCCCCCHH---HHHHhCCC-
Confidence 466788999999999999999999998 6677888888898888887 7888888777888875 35566776
Q ss_pred CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcc
Q 020874 251 PSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEE 285 (320)
Q Consensus 251 ~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~ 285 (320)
++||||+.+|+.+|+++|+.+|.+.||++...
T Consensus 187 ---~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s~~ 218 (237)
T TIGR01672 187 ---RIHYGDSDNDITAAKEAGARGIRILRASNSTY 218 (237)
T ss_pred ---eEEEeCCHHHHHHHHHCCCCEEEEEecCCCCC
Confidence 79999999999999999999999999977654
No 59
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.83 E-value=7.5e-20 Score=143.19 Aligned_cols=98 Identities=28% Similarity=0.393 Sum_probs=84.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc--------hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN--------EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAAST 246 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~--------~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~ 246 (320)
..++||+.++|+.|++.|++++++||+. ...+...++.+++. ++ .++... ...||++++|+.++++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~--~~~KP~~~~~~~~~~~ 97 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACP--HCRKPKPGMFLEALKR 97 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECC--CCCCCChHHHHHHHHH
Confidence 4678999999999999999999999998 77888899988654 22 223333 5689999999999999
Q ss_pred c-CCCCCcEEEEec-CHhhHHHHHHcCCeEEEEc
Q 020874 247 L-GVDPSSCVVVED-STIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 247 ~-g~~~~~~v~VGD-s~~Di~~A~~aG~~~v~v~ 278 (320)
+ +++|++++|||| +..|+.+|+++|+.+|+++
T Consensus 98 ~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 98 FNEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred cCCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 9 599999999999 6899999999999999985
No 60
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.83 E-value=8.1e-20 Score=147.00 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc---------------hHHHHHHHHHhcCcccccceeEEe----CCCCCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---------------EKAVTAIVSFLLGPERAEKIQIFA----GDVVPRKKP 235 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~---------------~~~~~~~l~~~~~~~~~~~~~i~~----~d~~~~~KP 235 (320)
+.++||+.++|+.|+++|++++++||.+ ...+...++.+++. |+. .+++ +++....||
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~-ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDD-VLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeE-EEECCCCCCCCCCCCCC
Confidence 5779999999999999999999999963 45678888888765 541 2344 577788999
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE 284 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~ 284 (320)
++++|..+++++|+++++++||||+.+|+++|+++|+.++++.++.-..
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~~~ 153 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDEEELNW 153 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhcCH
Confidence 9999999999999999999999999999999999999999998775543
No 61
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.80 E-value=2.2e-19 Score=158.25 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=94.3
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHH-HHHHHhcCccccccee-EEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVT-AIVSFLLGPERAEKIQ-IFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~-~~l~~~~~~~~~~~~~-i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.|+|+.++++.|+++|. ++++||.+..... ..+...+...+++... ....+....+||+|.+|..+++++|++++++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~ 222 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPART 222 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhE
Confidence 48999999999998887 7899998764321 1122223333443111 1123445578999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCCccccc----------CCCeeccCCCCC
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDFL----------NADAVFDCIGDP 300 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~~----------~a~~vi~~l~el 300 (320)
+||||+. .|+.+|+++|+++|+|.||....+.+. .+|++++++.|+
T Consensus 223 lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 223 LMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 9999996 999999999999999999988765542 589999999875
No 62
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.80 E-value=8.1e-19 Score=142.11 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=82.8
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchH------------HHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK------------AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~------------~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
+|||+.++|+.|+++|++++|+||++.. .++..++.+++. . + .+++++.....||+|++|+.++
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~-~-~--~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP-I-Q--VLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC-E-E--EEEecCCCCCCCCccHHHHHHH
Confidence 6899999999999999999999998763 467788888653 2 3 4555665567899999999999
Q ss_pred HHcC--CCCCcEEEEecCH--------hhHHHHHHcCCeEEE
Q 020874 245 STLG--VDPSSCVVVEDST--------IGLAAAKAAGMKCIV 276 (320)
Q Consensus 245 ~~~g--~~~~~~v~VGDs~--------~Di~~A~~aG~~~v~ 276 (320)
+++| +++++++||||+. +|+++|+++|+.+++
T Consensus 119 ~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 119 SQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 9999 9999999999996 699999999999976
No 63
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.78 E-value=4.8e-19 Score=153.92 Aligned_cols=127 Identities=12% Similarity=0.076 Sum_probs=99.6
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCC---CCCCCCHHHHHHHHHHcCCCCCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV---PRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~---~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
.|+++.++++.|++.+.+++++||.+.......+..++...+++ .+...... ..+||+|.+|+.+++++|++|++
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~ 198 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVT--ALEYATDTKATVVGKPSKTFFLEALRATGCEPEE 198 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHH--HHHHHhCCCceeecCCCHHHHHHHHHHhCCChhh
Confidence 37899999999999899999999988766555554455555554 23322222 24799999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcc-c---ccCCCeeccCCCCChhhHH
Q 020874 254 CVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEE-D---FLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 254 ~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~-~---~~~a~~vi~~l~el~~~l~ 305 (320)
++||||+. +|+.+|+++|+.+++|.+|..... . ...++++++++.|+.+.++
T Consensus 199 ~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l~ 255 (257)
T TIGR01458 199 AVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLIL 255 (257)
T ss_pred EEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHHh
Confidence 99999996 899999999999999999864322 1 2468999999998876543
No 64
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.77 E-value=9.9e-18 Score=135.54 Aligned_cols=118 Identities=18% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCC------CCCCCCHHHHHHHHHHcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV------PRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~------~~~KP~~~~~~~~~~~~g 248 (320)
+.+.+-.+++|-.|+.++ .++.||+...++...|+.+|+.+.|+ +|++.+.. -..||.+..|+.+++..|
T Consensus 99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFe--gii~~e~~np~~~~~vcKP~~~afE~a~k~ag 174 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFE--GIICFETLNPIEKTVVCKPSEEAFEKAMKVAG 174 (244)
T ss_pred cCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhcc--ceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence 678888999999998875 88999999999999999999999999 55554432 258999999999999999
Q ss_pred CC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCC
Q 020874 249 VD-PSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDP 300 (320)
Q Consensus 249 ~~-~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el 300 (320)
++ |.+++||+||.++|+.|++.|+.+|++...... .++++++.++.+.
T Consensus 175 i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~~----~~~d~~l~~ih~~ 223 (244)
T KOG3109|consen 175 IDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHKI----KGVDYALEQIHNN 223 (244)
T ss_pred CCCcCceEEEcCchhhHHHHHhccceeEEEEeeecc----cchHHHHHHhhch
Confidence 98 999999999999999999999999998755433 3455555444444
No 65
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.77 E-value=6.2e-18 Score=137.83 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=85.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCc-hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSN-EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~-~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.++||+.++|+.|+++|++++++||++ ...+...++.+++. .+ .+..||+|++|..+++++|++++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~-------~~----~~~~KP~p~~~~~~l~~~~~~~~~~ 111 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP-------VL----PHAVKPPGCAFRRAHPEMGLTSEQV 111 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE-------EE----cCCCCCChHHHHHHHHHcCCCHHHE
Confidence 457999999999999999999999998 56666666655432 11 1347999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF 287 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~ 287 (320)
+||||+. .|+.+|+++|+.+|++.+|....+.+
T Consensus 112 l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~~~ 145 (170)
T TIGR01668 112 AVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQWF 145 (170)
T ss_pred EEECCcchHHHHHHHHcCCeEEEEccCcCCcccc
Confidence 9999998 79999999999999999998776543
No 66
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.76 E-value=2.5e-17 Score=136.68 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC--------------------CCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV--------------------VPRKK 234 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~--------------------~~~~K 234 (320)
.+++||+.++|+.|+++|++++++||+....++..++.+++..+|+ .+++++. ...+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~--~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFI--EIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhhee--EEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 6889999999999999999999999999999999999998888887 6665432 12344
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKC 274 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~ 274 (320)
+|++.++++.+.. +++++||||+.+|+++|+++++-+
T Consensus 149 ~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 149 CKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred CHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 5688888887754 789999999999999999997544
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.75 E-value=1.3e-17 Score=130.43 Aligned_cols=101 Identities=29% Similarity=0.402 Sum_probs=89.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC----------------CCCHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----------------KPDPA 238 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~----------------KP~~~ 238 (320)
..+++++.++|+.|+++|++++++||+....+...++.+++..+++ .++..+..... ||++.
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFD--PVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhh--heeccchhhhhcccccccccccccccCCCCHH
Confidence 6889999999999999999999999999999999999987766666 56665544433 99999
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
.+..++++++..++++++|||+.+|+++++++|+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 999999999999999999999999999999999999874
No 68
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.75 E-value=1.3e-17 Score=141.37 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=94.3
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccccc-ceeEEeCCCCCCCCCCHHHH----------HHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE-KIQIFAGDVVPRKKPDPAIY----------TLA 243 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~-~~~i~~~d~~~~~KP~~~~~----------~~~ 243 (320)
.+++||+.++|+.|+++|++++|+|++....++.+++.++....+. ...++.++.+...||+|..+ ..+
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~ 148 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSL 148 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHH
Confidence 6899999999999999999999999999999999998874333331 11344455555667776654 366
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc--ccccCCCeeccCCCCChhhHHh
Q 020874 244 ASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE--EDFLNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 244 ~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~--~~~~~a~~vi~~l~el~~~l~~ 306 (320)
+++++..+++++||||+.+|+.+|+.||+ ++++. .... .....+...++++.|+.+.|.+
T Consensus 149 l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~ar~-~l~~~~~~~~~~~~~~~~f~di~~~l~~ 210 (214)
T TIGR03333 149 IRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFARD-YLLNECEELGLNHAPFQDFYDVRKELEN 210 (214)
T ss_pred HHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEehH-HHHHHHHHcCCCccCcCCHHHHHHHHHH
Confidence 77777788999999999999999999998 34332 2111 1223356667788777776654
No 69
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.73 E-value=8.8e-17 Score=134.45 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=86.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEE------eCCCCCCCCCCHHHHHHHHHHcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIF------AGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~------~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
.+++||+.++|+.|++.| +++|+|++....+..+++.++...++...-.+ ++... ..++++..+...+++.|
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~l~~~~ 144 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIAFKSLY 144 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHHHHhhC
Confidence 689999999999999975 99999999999999999999877666532222 22221 34554544444445655
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc-cCCCe-eccCCCCChhhHHh
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF-LNADA-VFDCIGDPPEERFD 306 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~-~~a~~-vi~~l~el~~~l~~ 306 (320)
. ++++|||+.||+.+++.+|+..++... +... ...|+ ++.+.+|+...+..
T Consensus 145 ~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak----~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T TIGR02137 145 Y---RVIAAGDSYNDTTMLSEAHAGILFHAP----ENVIREFPQFPAVHTYEDLKREFLK 197 (203)
T ss_pred C---CEEEEeCCHHHHHHHHhCCCCEEecCC----HHHHHhCCCCCcccCHHHHHHHHHH
Confidence 3 799999999999999999999988322 2222 22333 45666666655543
No 70
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.72 E-value=1.3e-16 Score=133.96 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=84.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce------eEEeCCC---CCCCCCCHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI------QIFAGDV---VPRKKPDPAIYTLAAS 245 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~------~i~~~d~---~~~~KP~~~~~~~~~~ 245 (320)
..++||+.++|+.++++|++++|+|++....++.++++++...++... ..+++.. ...+++|...++.+++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 468999999999999999999999999999999999998877665421 1222211 1245677888999999
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 246 TLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 246 ~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
+.+++++++++|||+.+|+.+++.+|..++..
T Consensus 166 ~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 99999999999999999999999999887653
No 71
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.72 E-value=2.5e-17 Score=132.02 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=90.4
Q ss_pred HHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIG 263 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~D 263 (320)
+|++|+++|++++|+||++...+...++.+++..+|+ + .||+++.++.+++++|+++++++||||+.+|
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~------~-----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D 104 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQ------G-----QSNKLIAFSDILEKLALAPENVAYIGDDLID 104 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEe------c-----ccchHHHHHHHHHHcCCCHHHEEEECCCHHH
Confidence 7899999999999999999999999999997665543 1 2788999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC---ChhhHHhhh
Q 020874 264 LAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD---PPEERFDLA 308 (320)
Q Consensus 264 i~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e---l~~~l~~~~ 308 (320)
+.+++++|+. +.+.+. .......+++++.+-.+ +.+.+.+++
T Consensus 105 ~~~~~~ag~~-~~v~~~--~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 149 (154)
T TIGR01670 105 WPVMEKVGLS-VAVADA--HPLLIPRADYVTRIAGGRGAVREVCELLL 149 (154)
T ss_pred HHHHHHCCCe-EecCCc--CHHHHHhCCEEecCCCCCcHHHHHHHHHH
Confidence 9999999998 554433 33445678999887754 445444444
No 72
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.71 E-value=1.4e-17 Score=134.63 Aligned_cols=113 Identities=18% Similarity=0.117 Sum_probs=93.8
Q ss_pred HHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIG 263 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~D 263 (320)
.++.|+++|++++|+||++...++..++.+++..+|+ . .||+|+.|+.+++++|++++++++|||+.+|
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~--~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nD 110 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHE--G---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVD 110 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEe--c---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHH
Confidence 3567788999999999999999999999998776664 1 2799999999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHHhhhhc
Q 020874 264 LAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERFDLAFC 310 (320)
Q Consensus 264 i~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~~~~~~ 310 (320)
+.+++.+|+..++ .+.....+..|++++.+-.+ ...++.+.++.
T Consensus 111 i~~~~~ag~~~am---~nA~~~lk~~A~~I~~~~~~~g~v~e~~e~il~ 156 (169)
T TIGR02726 111 LSMMKRVGLAVAV---GDAVADVKEAAAYVTTARGGHGAVREVAELILK 156 (169)
T ss_pred HHHHHHCCCeEEC---cCchHHHHHhCCEEcCCCCCCCHHHHHHHHHHH
Confidence 9999999999888 55666666789988765443 34556666654
No 73
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.71 E-value=1.5e-16 Score=142.57 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=86.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC---------------chHHHHHHHHHhcCcccccceeE-Ee----CCCCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS---------------NEKAVTAIVSFLLGPERAEKIQI-FA----GDVVPRKK 234 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~---------------~~~~~~~~l~~~~~~~~~~~~~i-~~----~d~~~~~K 234 (320)
..++||+.++|+.|+++|++++|+||. ....+..+++.+++. |+ .+ ++ +++...+|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd--~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FD--EVLICPHFPEDNCSCRK 104 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--ee--eEEEeCCcCcccCCCCC
Confidence 578999999999999999999999995 244566677777552 44 34 33 35667899
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~ 281 (320)
|+|.++..+++++++++++++||||+.+|+++|+++|+++|+++...
T Consensus 105 P~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~~ 151 (354)
T PRK05446 105 PKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYARET 151 (354)
T ss_pred CCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEECCC
Confidence 99999999999999999999999999999999999999999996543
No 74
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.71 E-value=2.7e-16 Score=133.61 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc----hHHHHHHHHHhcC--cccccceeEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN----EKAVTAIVSFLLG--PERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~----~~~~~~~l~~~~~--~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
..++||+.++|+.|+++|++++++||.. ......+++.+++ ..+|+ .+++++.. .||++.. .++++|
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~--vil~gd~~--~K~~K~~---~l~~~~ 185 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP--VIFAGDKP--GQYTKTQ---WLKKKN 185 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee--EEEcCCCC--CCCCHHH---HHHhcC
Confidence 6789999999999999999999999953 4556666766777 56665 67777753 6777643 556677
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcc
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEE 285 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~ 285 (320)
+ ++||||+.+|+.+|++||+.+|.+.||++..-
T Consensus 186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~~~~ 218 (237)
T PRK11009 186 I----RIFYGDSDNDITAAREAGARGIRILRAANSTY 218 (237)
T ss_pred C----eEEEcCCHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 6 89999999999999999999999999977543
No 75
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.69 E-value=7e-17 Score=139.82 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=84.6
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHH--H-HHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI--V-SFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~--l-~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
.|+.+.+.+..|+ .|.+ .++||.+..+.... + ..-.....+. ...+.+.+..+||+|.+|+.+++++++++++
T Consensus 122 ~y~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~--~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~ 197 (249)
T TIGR01457 122 DYEKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLE--VATGVKPVYIGKPNAIIMEKAVEHLGTEREE 197 (249)
T ss_pred CHHHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHH--HHhCCCccccCCChHHHHHHHHHHcCCCccc
Confidence 4566666677674 4666 67777654332110 0 0000000111 2234455667899999999999999999999
Q ss_pred EEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc----cCCCeeccCCCCC
Q 020874 254 CVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF----LNADAVFDCIGDP 300 (320)
Q Consensus 254 ~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~----~~a~~vi~~l~el 300 (320)
++||||+. +|+.+|+++|+++++|.+|....+.+ ..+|++++++.|+
T Consensus 198 ~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 198 TLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred EEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 99999997 89999999999999999998766544 3589999988775
No 76
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.69 E-value=3e-16 Score=139.97 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=94.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc-cccceeEEeCC-------CCCCCCCCHHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGD-------VVPRKKPDPAIYTLAAST 246 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~-~~~~~~i~~~d-------~~~~~KP~~~~~~~~~~~ 246 (320)
..++||+.++|+.|+++|++++++||.+....+..++.++... +|+ .+++.+ +.+..||+|++++.++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~--~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~ 263 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD--DLIGRPPDMHFQREQGDKRPDDVVKEEIFWE 263 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchh--hhhCCcchhhhcccCCCCCCcHHHHHHHHHH
Confidence 5779999999999999999999999999999999999998775 777 666666 345689999999999999
Q ss_pred cCC-CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 020874 247 LGV-DPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 247 ~g~-~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~ 281 (320)
++. .+++++||||+.+|+++|+++|+.+|+|.||.
T Consensus 264 ~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g~ 299 (300)
T PHA02530 264 KIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPGD 299 (300)
T ss_pred HhccCceEEEEEcCcHHHHHHHHHhCCeEEEecCCC
Confidence 998 57999999999999999999999999998874
No 77
>PLN02645 phosphoglycolate phosphatase
Probab=99.69 E-value=6.1e-17 Score=144.69 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHH-HHHHHHHhcCcccccceeEEeCCCC---CCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKIQIFAGDVV---PRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~-~~~~l~~~~~~~~~~~~~i~~~d~~---~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
.......|++++-.+.++||.+... ....+...+...+++ .+...... ..+||+|.+|..+++++|+++++++|
T Consensus 175 l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~--~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~ 252 (311)
T PLN02645 175 IQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVG--AIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICM 252 (311)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHH--HHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEE
Confidence 3444555554333577788877533 122222233333444 33332222 23699999999999999999999999
Q ss_pred EecCH-hhHHHHHHcCCeEEEEcCCCCCcccc------cCCCeeccCCCCChhhHH
Q 020874 257 VEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF------LNADAVFDCIGDPPEERF 305 (320)
Q Consensus 257 VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~------~~a~~vi~~l~el~~~l~ 305 (320)
|||+. +|+.+|+++|+++|+|.+|....+++ ..+|++++++.|+.+.+.
T Consensus 253 VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 253 VGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred EcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 99998 99999999999999999998776543 358999999998877543
No 78
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.68 E-value=1.2e-15 Score=128.23 Aligned_cols=102 Identities=25% Similarity=0.233 Sum_probs=85.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce-----eEEeCCCCC---CCCCCHHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-----QIFAGDVVP---RKKPDPAIYTLAAST 246 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~-----~i~~~d~~~---~~KP~~~~~~~~~~~ 246 (320)
.+++||+.++++.|+++|++++|+|++....++.+.+.++....+... +++++...+ .++-|...++.++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999877665522 122332222 334568889999999
Q ss_pred cCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 247 LGVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 247 ~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
+|++++++++||||.||+.|.+.+|.+.+.
T Consensus 156 ~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 156 LGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred cCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 999999999999999999999999988776
No 79
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.67 E-value=7e-16 Score=120.00 Aligned_cols=91 Identities=26% Similarity=0.355 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE 258 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG 258 (320)
|.+.+-++.+++.|+++.|+||+++..+....+.+++. .+ ....||-+..|+++++++++++++|+|||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~------fi-----~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP------FI-----YRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc------ee-----ecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 66777888999999999999999999999999888542 22 24589999999999999999999999999
Q ss_pred cCH-hhHHHHHHcCCeEEEEcCC
Q 020874 259 DST-IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 259 Ds~-~Di~~A~~aG~~~v~v~~g 280 (320)
|.. +|+.+++.+||.+|+|..-
T Consensus 118 DqL~TDVlggnr~G~~tIlV~Pl 140 (175)
T COG2179 118 DQLFTDVLGGNRAGMRTILVEPL 140 (175)
T ss_pred chhhhhhhcccccCcEEEEEEEe
Confidence 999 8999999999999998643
No 80
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.67 E-value=2.2e-15 Score=123.84 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=77.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccccccee------EEeCC----CCCCCCCCHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQ------IFAGD----VVPRKKPDPAIYTLAA 244 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~------i~~~d----~~~~~KP~~~~~~~~~ 244 (320)
.+++||+.++++.++++|++++|+|++....++.+++.++...++.... .+.+. ....+..|+..++.++
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~~~ 151 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKELL 151 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHHHH
Confidence 6789999999999999999999999999999999999987766554211 11221 1223455678899989
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHc
Q 020874 245 STLGVDPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 245 ~~~g~~~~~~v~VGDs~~Di~~A~~a 270 (320)
+++|++++++++|||+.+|+.+++.+
T Consensus 152 ~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 152 EESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 99999999999999999999999864
No 81
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.67 E-value=1.1e-15 Score=129.41 Aligned_cols=90 Identities=34% Similarity=0.480 Sum_probs=79.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++||+.++|+.|+++|++++++|+.+...+..+.+.+|+.+ .++.++.. +||++.+|..+++.+++.++++
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-----~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v 198 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-----SIVFARVI--GKPEPKIFLRIIKELQVKPGEV 198 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-----EEEEESHE--TTTHHHHHHHHHHHHTCTGGGE
T ss_pred CcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-----cccccccc--ccccchhHHHHHHHHhcCCCEE
Confidence 3588999999999999999999999999999999999987622 23333322 8999999999999999999999
Q ss_pred EEEecCHhhHHHHHHcC
Q 020874 255 VVVEDSTIGLAAAKAAG 271 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG 271 (320)
+||||+.||+.|+++||
T Consensus 199 ~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 199 AMVGDGVNDAPALKAAG 215 (215)
T ss_dssp EEEESSGGHHHHHHHSS
T ss_pred EEEccCHHHHHHHHhCc
Confidence 99999999999999997
No 82
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.66 E-value=4.7e-16 Score=120.63 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCC-chHHHHHHHHHhc-------CcccccceeEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLL-------GPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~-------~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
++||+.++|+.|+++|++++++||+ ....+...++.++ +..+|+ .+++++ .+|+|+.|..+++++|
T Consensus 30 ~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~--~~~~~~----~~pkp~~~~~a~~~lg 103 (128)
T TIGR01681 30 TIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFD--PLTIGY----WLPKSPRLVEIALKLN 103 (128)
T ss_pred HHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhh--hhhhcC----CCcHHHHHHHHHHHhc
Confidence 4799999999999999999999999 8888888888876 556666 555554 3689999999999999
Q ss_pred --CCCCcEEEEecCHhhHHHHHH
Q 020874 249 --VDPSSCVVVEDSTIGLAAAKA 269 (320)
Q Consensus 249 --~~~~~~v~VGDs~~Di~~A~~ 269 (320)
+.|++++||||+..|+...+.
T Consensus 104 ~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 104 GVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred CCCCcceEEEECCCHhHHHHHHh
Confidence 999999999999999887654
No 83
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.65 E-value=3.5e-15 Score=131.23 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=82.6
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCch-----HHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNE-----KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~-----~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
.++++.++++.++..+..+.++++... ...+.+.+.++......... .-+....+..|+.+++.+++++|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~ei~~~~~~K~~~l~~l~~~~gi~~ 215 (272)
T PRK10530 138 TFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHD--QVDIARKGNSKGKRLTQWVEAQGWSM 215 (272)
T ss_pred ceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCc--eEEEecCCCChHHHHHHHHHHcCCCH
Confidence 356777888877777766667776442 12222223222110000000 01334455567899999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHHhh
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERFDL 307 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~~~ 307 (320)
+++++|||+.||++|++.+|+..++ ++..++..+.|++++++-+| +.+.|.++
T Consensus 216 ~e~i~~GD~~NDi~m~~~ag~~vam---gna~~~lk~~Ad~v~~~n~~dGv~~~l~~~ 270 (272)
T PRK10530 216 KNVVAFGDNFNDISMLEAAGLGVAM---GNADDAVKARADLVIGDNTTPSIAEFIYSH 270 (272)
T ss_pred HHeEEeCCChhhHHHHHhcCceEEe---cCchHHHHHhCCEEEecCCCCcHHHHHHHH
Confidence 9999999999999999999975544 66666656789999887666 44544444
No 84
>PRK10444 UMP phosphatase; Provisional
Probab=99.63 E-value=4.3e-15 Score=128.16 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc----cCCCeeccCCCCC
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF----LNADAVFDCIGDP 300 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~----~~a~~vi~~l~el 300 (320)
...+||+|++|+.+++++++++++++||||+. +|+.+|+++|+.+++|.+|....+.+ ..+|++++++.|+
T Consensus 170 ~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 170 FYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 34689999999999999999999999999997 89999999999999999998876665 3599999999887
No 85
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.62 E-value=3.9e-16 Score=128.83 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIG 263 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~D 263 (320)
.++.|+++|++++++||.....+...++.+++..+|. + .+++++.++.+++++|+++++++||||+.+|
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~------g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D 124 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQ------G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLID 124 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeec------C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHH
Confidence 4566778999999999999999999999987654442 1 3567899999999999999999999999999
Q ss_pred HHHHHHcCCeEEEEcCCCCCcccccCCCeecc
Q 020874 264 LAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD 295 (320)
Q Consensus 264 i~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~ 295 (320)
+.+++++|+.++ +. +........++++++
T Consensus 125 ~~~a~~aG~~~~-v~--~~~~~~~~~a~~v~~ 153 (183)
T PRK09484 125 WPVMEKVGLSVA-VA--DAHPLLLPRADYVTR 153 (183)
T ss_pred HHHHHHCCCeEe-cC--ChhHHHHHhCCEEec
Confidence 999999999955 32 333333457899986
No 86
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.3e-14 Score=124.73 Aligned_cols=75 Identities=29% Similarity=0.456 Sum_probs=66.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc----cCCCeeccCCCCChhhHHh
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF----LNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~----~~a~~vi~~l~el~~~l~~ 306 (320)
.+||.+.+|+.+++.++.++++++||||+. +||.+|+++||.+++|..|.+..++. ..++++++++.|+...+..
T Consensus 188 ~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~~~~ 267 (269)
T COG0647 188 IGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITALKE 267 (269)
T ss_pred cCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhhhhc
Confidence 489999999999999999999999999999 89999999999999999998866554 3578999999998876654
No 87
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=114.69 Aligned_cols=194 Identities=16% Similarity=0.143 Sum_probs=116.5
Q ss_pred CceEEEEeCCCccccCCccchHHHHHHHHHHcCCCCCCchhHHHHHHHhcCcHHHHHHHHhhcCCCCCCCCCHHHHHHHH
Q 020874 76 LPSALLFDCDGVLVDTEKDGHRISFNDTFKEKELGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPEKAPSDEEERKQFI 155 (320)
Q Consensus 76 ~~k~viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (320)
..++|+||+|.|++..+. +.+.....|.+..... ......++.-.+.+.+... +
T Consensus 15 ~~~aVcFDvDSTvi~eEg------IdelA~~~G~~~~Va~----~T~rAMng~~~F~eaL~~R----------------l 68 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEG------IDELAAYCGVGEAVAE----VTRRAMNGEADFQEALAAR----------------L 68 (227)
T ss_pred hcCeEEEecCcchhHHhh------HHHHHHHhCchHHHHH----HHHHHhCCCCcHHHHHHHH----------------H
Confidence 347999999999987654 5666666665532211 1111122222222222211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc--c------ccceeEEeC
Q 020874 156 ASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE--R------AEKIQIFAG 227 (320)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~--~------~~~~~i~~~ 227 (320)
. +.+-........+.....++-||+.+++..|+++|.+++++|++...++..+..++|+.. . |++.+-+.+
T Consensus 69 ~-llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~g 147 (227)
T KOG1615|consen 69 S-LLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLG 147 (227)
T ss_pred H-HhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccc
Confidence 1 111111222233334457899999999999999999999999999999999999997765 2 222222222
Q ss_pred -CCCC---CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC
Q 020874 228 -DVVP---RKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD 299 (320)
Q Consensus 228 -d~~~---~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e 299 (320)
|.-+ .+--+++.+..+.+ |.....++||||+.+|+++-.. |..++......-..+...++.+.+.+|..
T Consensus 148 fd~~~ptsdsggKa~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk~nak~~~~~f~~ 220 (227)
T KOG1615|consen 148 FDTNEPTSDSGGKAEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVKANAKWYVTDFYV 220 (227)
T ss_pred cccCCccccCCccHHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhHhccHHHHHHHHH
Confidence 2111 23345777877766 8888899999999999998777 44455433222223333456665555443
No 88
>PRK11590 hypothetical protein; Provisional
Probab=99.56 E-value=5.6e-13 Score=112.68 Aligned_cols=181 Identities=16% Similarity=0.058 Sum_probs=102.8
Q ss_pred ceEEEEeCCCccccCCccchHHHHHHHH-HHcCCCCCCchhHHHHHHHhcCcHHHHHHHH--h--hcCCCCCCCCCHHHH
Q 020874 77 PSALLFDCDGVLVDTEKDGHRISFNDTF-KEKELGVTWDVDLYGELLKIGGGKERMTAYF--N--KTGWPEKAPSDEEER 151 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~--~~~~~~~~~~~~~~~ 151 (320)
.|+++||+||||++.. ....|...+ +++++... ........ +|.+........ . ..-+........+..
T Consensus 6 ~k~~iFD~DGTL~~~d---~~~~~~~~~~~~~g~~~~-~~~~~~~~--ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (211)
T PRK11590 6 RRVVFFDLDGTLHQQD---MFGSFLRYLLRRQPLNLL-LVLPLLPV--IGLGLLVKGRAARWPMSLLLWGCTFGHSEARL 79 (211)
T ss_pred ceEEEEecCCCCcccc---hHHHHHHHHHHhcchhhH-HHhHHHHH--hccCcccchhhhhhhHHHHHHHHHcCCCHHHH
Confidence 4799999999999444 344566666 77775532 22222222 333222211110 0 000000001123333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHH-HHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC--
Q 020874 152 KQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLI-DQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD-- 228 (320)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l-~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d-- 228 (320)
++..+.+.+.+.+ . ..++||+.++| +.|++.|++++|+||+....++.+++.++.... + .+++++
T Consensus 80 ~~~~~~f~~~~~~--------~-~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~-~--~~i~t~l~ 147 (211)
T PRK11590 80 QALEADFVRWFRD--------N-VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPR-V--NLIASQMQ 147 (211)
T ss_pred HHHHHHHHHHHHH--------h-CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccccc-C--ceEEEEEE
Confidence 3333333322211 1 46799999999 578888999999999999999999998864221 1 222221
Q ss_pred ------CCC-CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 229 ------VVP-RKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 229 ------~~~-~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
..+ ...... =..++.+.+|.+...+.+.|||.+|+.+...+|-+.+.
T Consensus 148 ~~~tg~~~g~~c~g~~-K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~v 201 (211)
T PRK11590 148 RRYGGWVLTLRCLGHE-KVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRV 201 (211)
T ss_pred EEEccEECCccCCChH-HHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEEE
Confidence 111 111111 12334444576777888999999999999999976654
No 89
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.54 E-value=1.1e-14 Score=102.01 Aligned_cols=69 Identities=39% Similarity=0.587 Sum_probs=63.6
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCCcccc----cCCCeeccCCCCC
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDS-TIGLAAAKAAGMKCIVTKSSYTAEEDF----LNADAVFDCIGDP 300 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs-~~Di~~A~~aG~~~v~v~~g~~~~~~~----~~a~~vi~~l~el 300 (320)
.+||+|.+|..+++++++++++++||||+ .+|+.+|+++|+.+|+|.+|....+.+ ..+|++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 58999999999999999999999999999 799999999999999999998887665 4799999999874
No 90
>PRK08238 hypothetical protein; Validated
Probab=99.54 E-value=4.1e-13 Score=125.71 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=90.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++||+.+.+++++++|++++++|++++..++.++++++. |+ .++++++....||+++. +.+.+.++ .+++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd--~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~ 142 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL---FD--GVFASDGTTNLKGAAKA-AALVEAFG--ERGF 142 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CC--EEEeCCCccccCCchHH-HHHHHHhC--ccCe
Confidence 67889999999999999999999999999999999998864 66 88888887777776653 33445555 3568
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
+|+||+.+|+.+++.+| ..+.|+.+..-....++....+..+...+..+.
T Consensus 143 ~yvGDS~~Dlp~~~~A~-~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~ 192 (479)
T PRK08238 143 DYAGNSAADLPVWAAAR-RAIVVGASPGVARAARALGPVERVFPPRPARLR 192 (479)
T ss_pred eEecCCHHHHHHHHhCC-CeEEECCCHHHHHHHHHcCCcceecCCCchHHH
Confidence 99999999999999999 666666543322222334445555555544333
No 91
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.54 E-value=3.1e-14 Score=122.94 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=81.0
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCC-CCcEEE
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD-PSSCVV 256 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~-~~~~v~ 256 (320)
|+++.++++.|+++|+++ ++||.+..+....+..++...++......+.+....+||+|.+|+.+++++|.. +++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 799999999998899997 889988877765555555444554222245555568999999999999999975 579999
Q ss_pred EecC-HhhHHHHHHcCCeEEEEc
Q 020874 257 VEDS-TIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 257 VGDs-~~Di~~A~~aG~~~v~v~ 278 (320)
|||+ .+|+.+|+++|+.+++|.
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEe
Confidence 9999 599999999999999985
No 92
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.53 E-value=4.8e-14 Score=126.63 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH----hcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF----LLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~----~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
.+|+|+.++|+.|+++|++++|+|+++...+...++. ++..++|+ .+..+ +||+++.+..+++++|+.+
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~--~~~~~-----~~pk~~~i~~~~~~l~i~~ 103 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFD--ARSIN-----WGPKSESLRKIAKKLNLGT 103 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHee--EEEEe-----cCchHHHHHHHHHHhCCCc
Confidence 4579999999999999999999999999999999999 76777776 33322 6899999999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCe
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
+++|||||++.|+.++++++-.
T Consensus 104 ~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 104 DSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred CcEEEECCCHHHHHHHHHHCCC
Confidence 9999999999999999997754
No 93
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.53 E-value=2.7e-13 Score=109.31 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=93.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc---------------hHHHHHHHHHhcCcccccceeEE-eC----CCCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN---------------EKAVTAIVSFLLGPERAEKIQIF-AG----DVVPRKK 234 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~---------------~~~~~~~l~~~~~~~~~~~~~i~-~~----d~~~~~K 234 (320)
+.+.||+.+++..|++.|++++++||-+ ...+...|+..++ .++ .++ +. +...++|
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id--~i~~Cph~p~~~c~cRK 105 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KID--GILYCPHHPEDNCDCRK 105 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccc--eEEECCCCCCCCCcccC
Confidence 4567999999999999999999999932 2334455555433 344 333 32 2356899
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCccccc-CCCeeccCCCCCh
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFL-NADAVFDCIGDPP 301 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~-~a~~vi~~l~el~ 301 (320)
|++-+++.+++++++++++.+||||...|+++|.++|++.+.+..+......-. .++.+.+++.++.
T Consensus 106 P~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 106 PKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred CChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 999999999999999999999999999999999999999888776655433222 4666777777666
No 94
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.50 E-value=2.6e-13 Score=116.28 Aligned_cols=105 Identities=22% Similarity=0.123 Sum_probs=75.9
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccceeEEe----CCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 020874 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA----GDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 195 i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~----~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a 270 (320)
+.+.++.....+...++.++. .+ .++. -+..+.+..|+..++.+++.+|++++++++|||+.||+.|++.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~--~~---~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~a 192 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGL--DL---EIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVA 192 (230)
T ss_pred eeecccccHHHHHHHHHHcCC--cE---EEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhc
Confidence 445555555556666666532 11 1111 23445677889999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHHhh
Q 020874 271 GMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERFDL 307 (320)
Q Consensus 271 G~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~~~ 307 (320)
|+.+++ ++..+..++.|+++..+-++ +.+.|.++
T Consensus 193 g~~vam---~Na~~~vk~~a~~v~~~n~~~Gv~~~l~~~ 228 (230)
T PRK01158 193 GFGVAV---ANADEELKEAADYVTEKSYGEGVAEAIEHL 228 (230)
T ss_pred CceEEe---cCccHHHHHhcceEecCCCcChHHHHHHHH
Confidence 998877 67777777789999876655 44444443
No 95
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.50 E-value=3.6e-14 Score=113.01 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=85.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc-cccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~-~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
+.++||+.++|+.|+ .+++++|+|++....++.+++.++... +|+ .+++++++...||+ |.++++++|.+|++
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~--~i~~~~d~~~~KP~---~~k~l~~l~~~p~~ 117 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGY--RRLFRDECVFVKGK---YVKDLSLLGRDLSN 117 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEee--eEEECccccccCCe---EeecHHHcCCChhc
Confidence 678999999999998 579999999999999999999987644 446 78999998889997 88899999999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEE
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCI 275 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v 275 (320)
+|||||+..|+.+++++|+..-
T Consensus 118 ~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 118 VIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred EEEEECCHHHhhcCccCEEEec
Confidence 9999999999999999997653
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.50 E-value=2.1e-13 Score=128.11 Aligned_cols=92 Identities=21% Similarity=0.279 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCch------------HHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNE------------KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~------------~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
++||+.+.|+.|++.|++++|+||... ..+..+++.+++. |+ .+++.+....+||++.++..++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fd--viia~~~~~~RKP~pGm~~~a~ 273 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQ--VFIAIGAGFYRKPLTGMWDHLK 273 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eE--EEEeCCCCCCCCCCHHHHHHHH
Confidence 589999999999999999999999766 4577888888653 55 6677777778999999999999
Q ss_pred HHcC----CCCCcEEEEecCHhhHHHHHHcCC
Q 020874 245 STLG----VDPSSCVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 245 ~~~g----~~~~~~v~VGDs~~Di~~A~~aG~ 272 (320)
++++ +++++++||||...|+.+++++|.
T Consensus 274 ~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 274 EEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 9985 899999999999988887776664
No 97
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.50 E-value=1.3e-12 Score=112.78 Aligned_cols=102 Identities=15% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeE------EeCCCCCCCCCCH---
Q 020874 167 MVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI------FAGDVVPRKKPDP--- 237 (320)
Q Consensus 167 ~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i------~~~d~~~~~KP~~--- 237 (320)
.+.+.+..+++.||+.++++.|+++|++++|+|++....++..++++++...+. .+ +..+.+..++|.|
T Consensus 112 ~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~--~IvSN~L~f~~dGvltG~~~P~i~ 189 (277)
T TIGR01544 112 KEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNV--KVVSNFMDFDEDGVLKGFKGPLIH 189 (277)
T ss_pred HHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCc--eEEeeeEEECCCCeEeCCCCCccc
Confidence 333443458999999999999999999999999999999999999987644443 44 4445555667777
Q ss_pred ------HHHHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 020874 238 ------AIYTLAASTLG--VDPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 238 ------~~~~~~~~~~g--~~~~~~v~VGDs~~Di~~A~~a 270 (320)
..++.+++.++ .+++++|+|||+.+|+.||..+
T Consensus 190 ~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 190 TFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred ccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 77778889998 8899999999999999998877
No 98
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.48 E-value=1.8e-13 Score=109.84 Aligned_cols=102 Identities=18% Similarity=0.341 Sum_probs=74.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcC-CchHHHHHHHHHhcCc----------ccccceeEEeCCCCCCCCCCHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCST-SNEKAVTAIVSFLLGP----------ERAEKIQIFAGDVVPRKKPDPAIYTLA 243 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~-~~~~~~~~~l~~~~~~----------~~~~~~~i~~~d~~~~~KP~~~~~~~~ 243 (320)
+.+||++.++|+.|+++|++++++|. ...+.+.+.|+.+++. ++|+...|+. + .|...|+.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~------g-sK~~Hf~~i 116 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP------G-SKTTHFRRI 116 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS------S--HHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec------C-chHHHHHHH
Confidence 78999999999999999999999994 4577899999999888 6776433322 2 668899999
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 244 ASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 244 ~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
.+..|++.++++||+|-..++......|+.+|.+.+|-..
T Consensus 117 ~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 117 HRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp HHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--H
T ss_pred HHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCH
Confidence 9999999999999999999999999999999999886543
No 99
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.46 E-value=2.3e-12 Score=109.02 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=85.6
Q ss_pred CCCChhHHHHHHHHH--HcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC----CCC-----------C-----
Q 020874 175 LPLRPGVAKLIDQAL--EKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD----VVP-----------R----- 232 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~--~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d----~~~-----------~----- 232 (320)
.++.||+.++++.+. +.|+.+.|+|+++.-.++.+|+..++...|. .|++.- .-+ +
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~--~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFS--EIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccc--eEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 889999999999994 4699999999999999999999999988887 566531 100 0
Q ss_pred CCCCHHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHcCCe-EEEEcCCCCCccc
Q 020874 233 KKPDPAIYTLAAST---LGVDPSSCVVVEDSTIGLAAAKAAGMK-CIVTKSSYTAEED 286 (320)
Q Consensus 233 ~KP~~~~~~~~~~~---~g~~~~~~v~VGDs~~Di~~A~~aG~~-~v~v~~g~~~~~~ 286 (320)
.-=|...++++++. -|+..++++||||+.||+.++...+-. .++.+.|+.-...
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~ 205 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKL 205 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHH
Confidence 11256777777766 377789999999999999999998765 6666666544443
No 100
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.44 E-value=1.6e-13 Score=117.18 Aligned_cols=101 Identities=18% Similarity=0.092 Sum_probs=73.5
Q ss_pred EEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE
Q 020874 195 VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKC 274 (320)
Q Consensus 195 i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~ 274 (320)
..+.+..........++.++.. +........-+..+.+.+|+..++++++++|++++++++|||+.||+.|++.+|+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~v 188 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKELGLN-LVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGV 188 (225)
T ss_pred EEEeecCCHHHHHHHHHhcCce-EEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceE
Confidence 3455555556666677766432 110000011244567788899999999999999999999999999999999999988
Q ss_pred EEEcCCCCCcccccCCCeeccCCCC
Q 020874 275 IVTKSSYTAEEDFLNADAVFDCIGD 299 (320)
Q Consensus 275 v~v~~g~~~~~~~~~a~~vi~~l~e 299 (320)
++ ++..++.++.|++|..+-.+
T Consensus 189 am---~Na~~~~k~~A~~vt~~~~~ 210 (225)
T TIGR01482 189 AV---ANAQPELKEWADYVTESPYG 210 (225)
T ss_pred Ec---CChhHHHHHhcCeecCCCCC
Confidence 87 77777777889998876555
No 101
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.43 E-value=7.5e-12 Score=98.57 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=94.9
Q ss_pred HHHHHHHhcC--CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh---cCcccccceeEEeCCCCCCCCCCHHH
Q 020874 165 LFMVLIEKKL--LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPAI 239 (320)
Q Consensus 165 ~~~~~~~~~~--~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~---~~~~~~~~~~i~~~d~~~~~KP~~~~ 239 (320)
.+.+.+..+. .++||++.+.|++-++.|++++|.|+++...+.-.+.+- .+..+|. +.+... --.|-...-
T Consensus 90 iWa~Gy~sgelkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfs--GyfDtt--iG~KrE~~S 165 (229)
T COG4229 90 IWAHGYESGELKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFS--GYFDTT--IGKKRESQS 165 (229)
T ss_pred HHHhccccCccccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhc--ceeecc--ccccccchh
Confidence 3444444443 579999999999999999999999999998776665543 1222343 444332 235667788
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCC
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIG 298 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~ 298 (320)
|.+++...|+.|.+++|..|++..+.+|+.+|+.++++.+..+.......-..++++|.
T Consensus 166 Y~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 166 YAKIAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred HHHHHHhcCCCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 99999999999999999999999999999999999986544333222233445566665
No 102
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.41 E-value=9.6e-12 Score=109.26 Aligned_cols=78 Identities=13% Similarity=0.081 Sum_probs=65.6
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHH
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERF 305 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~ 305 (320)
|..+.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|...++ ++..++.++.|++|..+-+| +.+.|.
T Consensus 189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm---~NA~~~vK~~A~~vt~~n~~dGva~~i~ 265 (270)
T PRK10513 189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAM---GNAIPSVKEVAQFVTKSNLEDGVAFAIE 265 (270)
T ss_pred EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEe---cCccHHHHHhcCeeccCCCcchHHHHHH
Confidence 3456778889999999999999999999999999999999999998888 78888888899999877655 445454
Q ss_pred hhh
Q 020874 306 DLA 308 (320)
Q Consensus 306 ~~~ 308 (320)
+++
T Consensus 266 ~~~ 268 (270)
T PRK10513 266 KYV 268 (270)
T ss_pred HHh
Confidence 443
No 103
>PLN02887 hydrolase family protein
Probab=99.37 E-value=2.5e-11 Score=115.82 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHH
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERF 305 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~ 305 (320)
|.++.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|...++ ++..++.++.|++|..+-+| +...|.
T Consensus 500 EI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAM---gNA~eeVK~~Ad~VT~sNdEDGVA~aLe 576 (580)
T PLN02887 500 EIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVAL---SNGAEKTKAVADVIGVSNDEDGVADAIY 576 (580)
T ss_pred EEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEe---CCCCHHHHHhCCEEeCCCCcCHHHHHHH
Confidence 4456777889999999999999999999999999999999999998888 88888888899999877665 445554
Q ss_pred hhh
Q 020874 306 DLA 308 (320)
Q Consensus 306 ~~~ 308 (320)
+++
T Consensus 577 k~~ 579 (580)
T PLN02887 577 RYA 579 (580)
T ss_pred Hhh
Confidence 443
No 104
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.35 E-value=3e-11 Score=106.25 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCe--eccCCCC--Chhh
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADA--VFDCIGD--PPEE 303 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~--vi~~l~e--l~~~ 303 (320)
+.++.+--|..+++.+++.+|+++++++.|||+.||+.|.+.+|...++ ++..++.++.|++ ++.+-+| +...
T Consensus 181 eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm---~Na~~~vK~~A~~~~v~~~n~edGva~~ 257 (272)
T PRK15126 181 EVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIM---GNAMPQLRAELPHLPVIGHCRNQAVSHY 257 (272)
T ss_pred EeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceec---cCChHHHHHhCCCCeecCCCcchHHHHH
Confidence 3456677789999999999999999999999999999999999988887 7777777777875 6666554 5555
Q ss_pred HHhhhh
Q 020874 304 RFDLAF 309 (320)
Q Consensus 304 l~~~~~ 309 (320)
|.+++.
T Consensus 258 l~~~~~ 263 (272)
T PRK15126 258 LTHWLD 263 (272)
T ss_pred HHHHhc
Confidence 655553
No 105
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.34 E-value=8.1e-12 Score=105.96 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=71.8
Q ss_pred eEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 020874 194 KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 194 ~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
.++++++.....+...++..+...... . ..-+..+.+..|...++++++++|++++++++|||+.||++|++.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~~~~~~~--~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~ 185 (215)
T TIGR01487 109 LVIMREGKDVDEVREIIKERGLNLVDS--G-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFK 185 (215)
T ss_pred EEEecCCccHHHHHHHHHhCCeEEEec--C-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCe
Confidence 344455555566666666543222111 0 1113345667788999999999999999999999999999999999998
Q ss_pred EEEEcCCCCCcccccCCCeeccCCCC
Q 020874 274 CIVTKSSYTAEEDFLNADAVFDCIGD 299 (320)
Q Consensus 274 ~v~v~~g~~~~~~~~~a~~vi~~l~e 299 (320)
+++ ++..++.++.|++++.+-++
T Consensus 186 vam---~na~~~~k~~A~~v~~~~~~ 208 (215)
T TIGR01487 186 VAV---ANADDQLKEIADYVTSNPYG 208 (215)
T ss_pred EEc---CCccHHHHHhCCEEcCCCCC
Confidence 888 66777777789999875443
No 106
>PRK10976 putative hydrolase; Provisional
Probab=99.34 E-value=7.8e-12 Score=109.61 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=63.2
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCC--eeccCCCC--Chhh
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNAD--AVFDCIGD--PPEE 303 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~--~vi~~l~e--l~~~ 303 (320)
+.++.+-.|..+++.+++.+|++++++++|||+.||+.|.+.+|...++ ++..++.++.|+ +++.+-+| +...
T Consensus 183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm---~NA~~~vK~~A~~~~v~~~n~edGVa~~ 259 (266)
T PRK10976 183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIM---GNAHQRLKDLLPELEVIGSNADDAVPHY 259 (266)
T ss_pred EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeee---cCCcHHHHHhCCCCeecccCchHHHHHH
Confidence 3445677789999999999999999999999999999999999998888 778887777776 67766555 4445
Q ss_pred HHhhh
Q 020874 304 RFDLA 308 (320)
Q Consensus 304 l~~~~ 308 (320)
|.+++
T Consensus 260 l~~~~ 264 (266)
T PRK10976 260 LRKLY 264 (266)
T ss_pred HHHHh
Confidence 54443
No 107
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.33 E-value=2.7e-10 Score=95.97 Aligned_cols=98 Identities=13% Similarity=-0.046 Sum_probs=67.4
Q ss_pred CCCChhHHHHHH-HHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC----CCC-----CCCCCHHHHHHHH
Q 020874 175 LPLRPGVAKLID-QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD----VVP-----RKKPDPAIYTLAA 244 (320)
Q Consensus 175 ~~~~pg~~e~l~-~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d----~~~-----~~KP~~~~~~~~~ 244 (320)
..++||+.++|+ .++++|++++|+||+....++.+.+..++.... .+++.+ +.+ ...- ..=..++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~---~~i~t~le~~~gg~~~g~~c~g-~~Kv~rl~ 168 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRL---NLIASQIERGNGGWVLPLRCLG-HEKVAQLE 168 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccC---cEEEEEeEEeCCceEcCccCCC-hHHHHHHH
Confidence 467999999996 788899999999999999999998775432222 222221 101 0111 11122334
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 245 STLGVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 245 ~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
+.+|.+.+.+.+.|||.+|+.+...+|-+.+.
T Consensus 169 ~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 169 QKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRV 200 (210)
T ss_pred HHhCCChhheEEecCCcccHHHHHhCCCcEEE
Confidence 44565667788999999999999999977664
No 108
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.32 E-value=4.3e-11 Score=107.52 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc---cCCCeec
Q 020874 232 RKKPDPAIYTLAASTL--------GV-----DPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF---LNADAVF 294 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~--------g~-----~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~---~~a~~vi 294 (320)
.+||++.+|+.+++.+ +. ++++++||||++ +||.+|+++|+.+|+|.+|....++. ..+++++
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~vv 310 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLIV 310 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEEE
Confidence 5999999999988877 43 347999999999 89999999999999999884443322 2489999
Q ss_pred cCCCCChhhHH
Q 020874 295 DCIGDPPEERF 305 (320)
Q Consensus 295 ~~l~el~~~l~ 305 (320)
+++.|+...|+
T Consensus 311 ~~l~e~~~~i~ 321 (321)
T TIGR01456 311 NDVFDAVTKIL 321 (321)
T ss_pred CCHHHHHHHhC
Confidence 99998877653
No 109
>PTZ00445 p36-lilke protein; Provisional
Probab=99.31 E-value=2.9e-11 Score=98.86 Aligned_cols=102 Identities=17% Similarity=0.238 Sum_probs=79.5
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCch---------------HHHHHHHHHhcCcccccceeEEeC-------C----C
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNE---------------KAVTAIVSFLLGPERAEKIQIFAG-------D----V 229 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~---------------~~~~~~l~~~~~~~~~~~~~i~~~-------d----~ 229 (320)
.+.|++..++..|++.|++|+|||=.+. ++++..|+.-+-.-... .+++. + .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~--~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIK--KVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceee--eeeeeCCcccCChhhhhh
Confidence 4568899999999999999999996543 35666666542211111 23321 1 2
Q ss_pred CCCCCCCHHH--H--HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 020874 230 VPRKKPDPAI--Y--TLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 230 ~~~~KP~~~~--~--~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~ 279 (320)
++..||+|.+ | +++++++|+.|++++||+|+..++++|+++|+.++.+..
T Consensus 153 ~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 153 LGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTG 206 (219)
T ss_pred hcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCC
Confidence 3678999999 8 999999999999999999999999999999999999864
No 110
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.31 E-value=1.1e-10 Score=102.68 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccc
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDP-SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDF 287 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~-~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~ 287 (320)
+.++.+ .|...++++++.+|+++ +++++|||+.||+.|++.+|+.+++ ++..++.+
T Consensus 184 ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam---~NA~~~~k 240 (273)
T PRK00192 184 HLLGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVV---PGPDGPNP 240 (273)
T ss_pred EEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEe---CCCCCCCc
Confidence 334555 78889999999999999 9999999999999999999999988 55555544
No 111
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.29 E-value=4.2e-11 Score=95.85 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=65.6
Q ss_pred ChhHHHHHHHHHHcCC--eEEEEcCCc-------hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020874 178 RPGVAKLIDQALEKGV--KVAVCSTSN-------EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~--~i~lvT~~~-------~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
.|.+.+.++++++.+. +|.|+||+. ...++..-+.+++ .++.. ...|| ..+..+++.++
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI-------pvl~h---~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI-------PVLRH---RAKKP--GCFREILKYFK 128 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC-------cEEEe---CCCCC--ccHHHHHHHHh
Confidence 3556667777877755 599999973 5556666666643 22211 23566 45556666665
Q ss_pred C-----CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCC
Q 020874 249 V-----DPSSCVVVEDST-IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 249 ~-----~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g 280 (320)
. .|++++||||.. +|+.+|...|+.+||+..|
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g 166 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG 166 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence 4 499999999999 8999999999999999876
No 112
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.28 E-value=2.4e-11 Score=104.39 Aligned_cols=49 Identities=33% Similarity=0.487 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCeEEEEcCC
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSC-VVVEDST-IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~-v~VGDs~-~Di~~A~~aG~~~v~v~~g 280 (320)
.+||++.+|+.++++++++++++ +||||+. +|+.+|+++|+++++|.+|
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 57999999999999999999887 9999998 8999999999999999775
No 113
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.25 E-value=7.3e-11 Score=100.92 Aligned_cols=73 Identities=26% Similarity=0.344 Sum_probs=62.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCccccc--------CCCeeccCCCCChh
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDFL--------NADAVFDCIGDPPE 302 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~~--------~a~~vi~~l~el~~ 302 (320)
.+||.+.++..++++++++|++++||||+. +||.-+++.|++++++..|-+..++.. .+|+.++++.++.+
T Consensus 222 ~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d~~~ 301 (306)
T KOG2882|consen 222 LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGDLLP 301 (306)
T ss_pred cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHHHhh
Confidence 599999999999999999999999999999 699999999999999999887665542 26777777777655
Q ss_pred hH
Q 020874 303 ER 304 (320)
Q Consensus 303 ~l 304 (320)
.+
T Consensus 302 ~~ 303 (306)
T KOG2882|consen 302 LL 303 (306)
T ss_pred hc
Confidence 43
No 114
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.24 E-value=7.3e-11 Score=103.32 Aligned_cols=77 Identities=21% Similarity=0.170 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC--ChhhHHh
Q 020874 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD--PPEERFD 306 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e--l~~~l~~ 306 (320)
.++.+.-|..+++++++++|++++++++|||+.||+.|.+.+|...++ ++..+..++.|+++..+-++ +...|.+
T Consensus 183 i~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam---~Na~~~~k~~A~~vt~~n~~~Gv~~~l~~ 259 (264)
T COG0561 183 ITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAM---GNADEELKELADYVTTSNDEDGVAEALEK 259 (264)
T ss_pred EecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeec---cCCCHHHHhhCCcccCCccchHHHHHHHH
Confidence 346777889999999999999999999999999999999999988887 77777777788877666555 4444444
Q ss_pred hh
Q 020874 307 LA 308 (320)
Q Consensus 307 ~~ 308 (320)
++
T Consensus 260 ~~ 261 (264)
T COG0561 260 LL 261 (264)
T ss_pred Hh
Confidence 43
No 115
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.23 E-value=2.7e-12 Score=103.26 Aligned_cols=76 Identities=28% Similarity=0.388 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCcccc----cCCCeeccCCCCChhhHHh
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAEEDF----LNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~~~----~~a~~vi~~l~el~~~l~~ 306 (320)
.+||.+.+|+.+++-+|++|+++|||||.. .|+-+|+.+||..|.|+.|-....+. ..+|.++++|.|-.+.|++
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I~q 258 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLIIQ 258 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHHHh
Confidence 589999999999999999999999999999 59999999999999999886655222 3588899999998887765
Q ss_pred h
Q 020874 307 L 307 (320)
Q Consensus 307 ~ 307 (320)
-
T Consensus 259 ~ 259 (262)
T KOG3040|consen 259 N 259 (262)
T ss_pred h
Confidence 3
No 116
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.20 E-value=7.7e-10 Score=96.39 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC
Q 020874 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD 299 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e 299 (320)
.++.+-.|..+++.+++.+|++++++++|||+.||+.|++.+|+.+++ ++..+..+..|++++.+-+|
T Consensus 182 I~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~---~na~~~~k~~a~~~~~~n~~ 249 (256)
T TIGR00099 182 ITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAM---GNADEELKALADYVTDSNNE 249 (256)
T ss_pred ecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEe---cCchHHHHHhCCEEecCCCC
Confidence 345677789999999999999999999999999999999999998777 55666666779998877554
No 117
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.20 E-value=3.7e-10 Score=97.65 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHH---HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
..++||+.++|+.|+++|++++++||..... +...|+.+|....+.. .++..+. .++++..++.+.+.+++
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d-~lllr~~---~~~K~~rr~~I~~~y~I-- 190 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEE-HLLLKKD---KSSKESRRQKVQKDYEI-- 190 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcc-eEEeCCC---CCCcHHHHHHHHhcCCE--
Confidence 6789999999999999999999999987443 4477777766543332 5555543 35667778888787776
Q ss_pred CcEEEEecCHhhHHHH
Q 020874 252 SSCVVVEDSTIGLAAA 267 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A 267 (320)
+++|||+..|+..+
T Consensus 191 --vl~vGD~~~Df~~~ 204 (266)
T TIGR01533 191 --VLLFGDNLLDFDDF 204 (266)
T ss_pred --EEEECCCHHHhhhh
Confidence 89999999999654
No 118
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.19 E-value=9.6e-12 Score=95.86 Aligned_cols=98 Identities=21% Similarity=0.190 Sum_probs=79.6
Q ss_pred HHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 020874 185 IDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGL 264 (320)
Q Consensus 185 l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di 264 (320)
++.|.+.|++++|+|+.+...++...+.+|+..++. + .+.+...|+.+++++|+.++++.||||..+|+
T Consensus 44 ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~~~q------G-----~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 44 IKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKHLYQ------G-----ISDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCceeee------c-----hHhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 566778899999999999999999999997764443 1 23457899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEcCCCCCcccccCCCeeccC
Q 020874 265 AAAKAAGMKCIVTKSSYTAEEDFLNADAVFDC 296 (320)
Q Consensus 265 ~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~ 296 (320)
.....+|..++. ...+....+.+++|...
T Consensus 113 pvm~~vGls~a~---~dAh~~v~~~a~~Vt~~ 141 (170)
T COG1778 113 PVMEKVGLSVAV---ADAHPLLKQRADYVTSK 141 (170)
T ss_pred HHHHHcCCcccc---cccCHHHHHhhHhhhhc
Confidence 999999998765 34445555667776443
No 119
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.18 E-value=1.3e-10 Score=93.33 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=66.9
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCc--------------hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSN--------------EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLA 243 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~--------------~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~ 243 (320)
+|+|.+.|+.|.+.|++|+|+||-. ...++.+++.+++. .. .+++...-..+||.+-+++.+
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~--~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQ--VYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EE--EEECGCSSTTSTTSSHHHHHH
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eE--EEecCCCCCCCCCchhHHHHH
Confidence 4689999999999999999999841 12345556665433 11 233333337899999999999
Q ss_pred HHHcCC----CCCcEEEEecC-----------HhhHHHHHHcCCeEE
Q 020874 244 ASTLGV----DPSSCVVVEDS-----------TIGLAAAKAAGMKCI 275 (320)
Q Consensus 244 ~~~~g~----~~~~~v~VGDs-----------~~Di~~A~~aG~~~v 275 (320)
++.++. +.++.+||||. ..|.+-|.++|+++.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence 999875 88999999996 689999999999864
No 120
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=1.3e-09 Score=86.19 Aligned_cols=129 Identities=15% Similarity=0.106 Sum_probs=90.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC---------------CCCCCCCHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV---------------VPRKKPDPAI 239 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~---------------~~~~KP~~~~ 239 (320)
..+.||.++++++.++++++++|+|++-...+..+++.+++.+..+.+.+++.++ -..+.-++..
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~v 151 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSV 151 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchh
Confidence 7889999999999999999999999999999999999997776665555554322 1233344444
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC--cccccCCCeeccCCCCChhhHHhhhhc
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA--EEDFLNADAVFDCIGDPPEERFDLAFC 310 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~--~~~~~~a~~vi~~l~el~~~l~~~~~~ 310 (320)
+... .-.++.++|.||+..|+.+|+....-++- ..-- .....-...-++.+.|+...+.+++..
T Consensus 152 I~~l----~e~~e~~fy~GDsvsDlsaaklsDllFAK---~~L~nyc~eqn~~f~~fe~F~eIlk~iekvl~~ 217 (220)
T COG4359 152 IHEL----SEPNESIFYCGDSVSDLSAAKLSDLLFAK---DDLLNYCREQNLNFLEFETFYEILKEIEKVLEV 217 (220)
T ss_pred HHHh----hcCCceEEEecCCcccccHhhhhhhHhhH---HHHHHHHHHcCCCCcccccHHHHHHHHHHHHhh
Confidence 4443 34667799999999999999987754321 1000 001122455677888888888777643
No 121
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.16 E-value=3.1e-10 Score=94.30 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccc-cceeEEeCCCC---C--CCC---CCHHHHHHH---HHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-EKIQIFAGDVV---P--RKK---PDPAIYTLA---AST 246 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~-~~~~i~~~d~~---~--~~K---P~~~~~~~~---~~~ 246 (320)
|++.++|+.++++|++++|+|++....++.+++.++..... ....+...... + .+. -|...++.+ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 55559999999999999999999999999999988665422 11111100000 0 000 156667766 444
Q ss_pred cCCCCCcEEEEecCHhhHHHHH
Q 020874 247 LGVDPSSCVVVEDSTIGLAAAK 268 (320)
Q Consensus 247 ~g~~~~~~v~VGDs~~Di~~A~ 268 (320)
+....++++||||.+|+.+++
T Consensus 172 -~~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 172 -DIDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp -THTCCEEEEEESSGGGHHHHH
T ss_pred -CCCCCeEEEEECCHHHHHHhC
Confidence 788899999999999999975
No 122
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.13 E-value=1e-09 Score=89.49 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=82.1
Q ss_pred CCCChhHHHHHHHHHHcCC-eEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC----CCC-----CCC----------
Q 020874 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD----VVP-----RKK---------- 234 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~-~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d----~~~-----~~K---------- 234 (320)
.+..||+.++++.+++.|. .+.|+|..+.-.++.+|++++..++|. .|++.- .-+ ...
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~--~IfTNPa~~da~G~L~v~pyH~~hsC~~CPs 160 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFS--EIFTNPACVDASGRLLVRPYHTQHSCNLCPS 160 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHH--HHhcCCcccCCCCcEEeecCCCCCccCcCch
Confidence 7889999999999999985 999999999999999999999999888 666531 111 111
Q ss_pred --CCHHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHc-CCeEEEEcCCCCCcc
Q 020874 235 --PDPAIYTLAAST---LGVDPSSCVVVEDSTIGLAAAKAA-GMKCIVTKSSYTAEE 285 (320)
Q Consensus 235 --P~~~~~~~~~~~---~g~~~~~~v~VGDs~~Di~~A~~a-G~~~v~v~~g~~~~~ 285 (320)
-|..++.++... -|+..++.+||||+.||+..-... +..+++...|+.-++
T Consensus 161 NmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgfpl~k 217 (256)
T KOG3120|consen 161 NMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGFPLWK 217 (256)
T ss_pred hhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCCchHh
Confidence 133444444433 377788999999999999887765 556777777765544
No 123
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.12 E-value=5.5e-09 Score=91.82 Aligned_cols=68 Identities=10% Similarity=-0.049 Sum_probs=53.7
Q ss_pred CCCCCCCCCHHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCC-c-c----cccCCCeeccCCC
Q 020874 228 DVVPRKKPDPAIYTLAASTLGV---DPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTA-E-E----DFLNADAVFDCIG 298 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~---~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~-~-~----~~~~a~~vi~~l~ 298 (320)
+.++.+-.|..+++.+++.+|+ ++++++.|||+.||+.|.+.+|...++ ++.. + . ....++++....+
T Consensus 180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM---~~~~~~~~~l~~~~~~~~~~~~~~~ 256 (271)
T PRK03669 180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVV---KGLNREGVHLQDDDPARVYRTQREG 256 (271)
T ss_pred EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEe---cCCCCCCcccccccCCceEeccCCC
Confidence 4456677889999999999999 999999999999999999999988777 3322 1 1 2235777766655
No 124
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.12 E-value=2.2e-10 Score=110.47 Aligned_cols=113 Identities=20% Similarity=0.171 Sum_probs=86.3
Q ss_pred CCCChhHHHHHHHHHHcC-CeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G-~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
.+++||+.++|+.|+++| ++++++||.+...++..+++++..++|. .+ .+++|++.+ ++++..+++
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~~f~--~~-------~p~~K~~~v----~~l~~~~~~ 449 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDEVHA--EL-------LPEDKLAIV----KELQEEGGV 449 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCeeec--cC-------CHHHHHHHH----HHHHHcCCE
Confidence 469999999999999999 9999999999999999999998765554 11 122334444 444446679
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhh
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEE 303 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~ 303 (320)
++||||+.+|+.+++++| +++.+|+..+.....||+++. ++..+.+.
T Consensus 450 v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~ 498 (556)
T TIGR01525 450 VAMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLNDDLSSLPTA 498 (556)
T ss_pred EEEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeCCCHHHHHHH
Confidence 999999999999999999 455556555545568999988 45555444
No 125
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.10 E-value=2.6e-10 Score=109.38 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=88.9
Q ss_pred CCCChhHHHHHHHHHHcCC-eEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~-~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
.+++||+.++|+.|+++|+ +++++||.+...++..++++|...+|. .+ . +.++.+ ++++++...++
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~--~~-----~--p~~K~~----~i~~l~~~~~~ 427 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHA--EL-----L--PEDKLE----IVKELREKYGP 427 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhh--cc-----C--cHHHHH----HHHHHHhcCCE
Confidence 4689999999999999999 999999999999999999998766554 11 1 223333 44555556689
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCCC-CCcccccCCCeec--cCCCCChhhH
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCIVTKSSY-TAEEDFLNADAVF--DCIGDPPEER 304 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v~v~~g~-~~~~~~~~a~~vi--~~l~el~~~l 304 (320)
++||||+.||+.+++++|+ ++.+|+ ..+.....+|+++ +++.++.+.+
T Consensus 428 v~~vGDg~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i 478 (536)
T TIGR01512 428 VAMVGDGINDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRLPQAI 478 (536)
T ss_pred EEEEeCCHHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence 9999999999999999995 555573 4444556899998 7888886644
No 126
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.05 E-value=6.3e-09 Score=88.57 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 020874 231 PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCI 275 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v 275 (320)
+.+-.|+..++++++.+|++++++++|||+.||+.|.+.+|...+
T Consensus 175 ~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 175 GASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 444457788999999999999999999999999999999997765
No 127
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.05 E-value=1e-09 Score=94.65 Aligned_cols=59 Identities=10% Similarity=0.115 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAI 239 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~ 239 (320)
||+.++|++|+++|++++|+|++....+...++.+|+..+|+ .+++++++...||+++.
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFd--vIIs~Gdv~~~kp~~e~ 207 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFD--IIISGGHKAEEYSTMST 207 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccC--EEEECCccccCCCCccc
Confidence 999999999999999999999999999999999999999998 89999888888888743
No 128
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.01 E-value=2.6e-09 Score=91.92 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCC----eeccC
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNAD----AVFDC 296 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~----~vi~~ 296 (320)
+..+.+++|+..++.+++++|++++++++|||+.||+.|++.+|...++ ++...+.++.++ ++.++
T Consensus 152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav---~na~~~~k~~a~~~~~~v~~~ 221 (236)
T TIGR02471 152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV---GNHDPELEGLRHQQRIYFANN 221 (236)
T ss_pred EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE---cCCcHHHHHhhcCCcEEEcCC
Confidence 4567788999999999999999999999999999999999999977766 666666666677 55543
No 129
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.01 E-value=4e-09 Score=91.08 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCC
Q 020874 231 PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGD 299 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~e 299 (320)
+.+--|..+++.+++.+|++++++++|||+.||+.|.+.+|...++ ++..++.+..|++++.+-.|
T Consensus 182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am---~na~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAM---GNATPELKKAADYITPSNND 247 (254)
T ss_dssp ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEE---TTS-HHHHHHSSEEESSGTC
T ss_pred eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEE---cCCCHHHHHhCCEEecCCCC
Confidence 4566779999999999999999999999999999999999988888 78888888899999998887
No 130
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.99 E-value=1.1e-09 Score=105.62 Aligned_cols=113 Identities=17% Similarity=0.128 Sum_probs=85.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+++||+.++++.|+++|++++++||.+...++..+++++.. ++ .+. .+++|.+.++.+ +..++++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~-~~-------~~~--~p~~K~~~v~~l----~~~~~~v 469 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN-VR-------AEV--LPDDKAALIKEL----QEKGRVV 469 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc-EE-------ccC--ChHHHHHHHHHH----HHcCCEE
Confidence 468999999999999999999999999999999999999763 22 122 123445555444 3367899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhhH
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
+||||+.||+.+++++|+. +.+|+..+.....||+++. ++.++...+
T Consensus 470 ~~VGDg~nD~~al~~A~vg---ia~g~g~~~a~~~Advvl~~~~l~~l~~~i 518 (562)
T TIGR01511 470 AMVGDGINDAPALAQADVG---IAIGAGTDVAIEAADVVLMRNDLNDVATAI 518 (562)
T ss_pred EEEeCCCccHHHHhhCCEE---EEeCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence 9999999999999999964 4446555555578999984 666665544
No 131
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.98 E-value=5.8e-09 Score=93.18 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=82.4
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh-c-------CcccccceeEEeCCCCC---------------
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL-L-------GPERAEKIQIFAGDVVP--------------- 231 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~-~-------~~~~~~~~~i~~~d~~~--------------- 231 (320)
+..+||+.++|+.|+++|++++|+||.+...++..++.+ + ..++|+ .++++..-+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD--~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD--VVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc--EEEeCCCCCcccCCCCceEEEeCC
Confidence 567999999999999999999999999999999999997 5 567887 666543211
Q ss_pred --CCCCCH------------HHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 020874 232 --RKKPDP------------AIYTLAASTLGVDPSSCVVVEDST-IGLAAAK-AAGMKCIVTKS 279 (320)
Q Consensus 232 --~~KP~~------------~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~-~aG~~~v~v~~ 279 (320)
..++.. --...+.+.+|+.+++++||||+. .|+.+++ .+||.+|+|..
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 011111 114557788899999999999999 8999998 99999999764
No 132
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.97 E-value=2.9e-08 Score=86.52 Aligned_cols=67 Identities=10% Similarity=-0.014 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCc---ccccC--CC-eeccCCC
Q 020874 229 VVPRKKPDPAIYTLAASTLGVD--PSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAE---EDFLN--AD-AVFDCIG 298 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~--~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~---~~~~~--a~-~vi~~l~ 298 (320)
..+.+-.|...++++++.+|++ .+++++|||+.||+.|.+.+|...++ ++..+ +.++. |+ ++..+-+
T Consensus 170 i~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam---~Na~~~~~~lk~~~~a~~~vt~~~~ 244 (256)
T TIGR01486 170 VLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVV---PGPNGPNVSLKPGDPGSFLLTPAPG 244 (256)
T ss_pred EecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEe---CCCCCCccccCccCCCcEEEcCCCC
Confidence 3456778899999999999999 99999999999999999999988888 55542 33333 34 7765543
No 133
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.93 E-value=4e-08 Score=85.25 Aligned_cols=51 Identities=16% Similarity=0.308 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
+.++.+.+|...++++++++|++++++++|||+.||+.|++.++..++.+.
T Consensus 160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~ 210 (249)
T TIGR01485 160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVS 210 (249)
T ss_pred EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEEC
Confidence 456788999999999999999999999999999999999999766666664
No 134
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.88 E-value=1.1e-09 Score=88.45 Aligned_cols=98 Identities=12% Similarity=0.144 Sum_probs=83.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc-cccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~-~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
+..+||+.++|+.|.+. +.++|.|++...+++.+++.++... +|. .++..+.....+++ +.+.+..+|.++++
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~--~~l~r~~~~~~~~~---~~K~L~~l~~~~~~ 114 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVIS--RRLYRESCVFTNGK---YVKDLSLVGKDLSK 114 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEe--EEEEccccEEeCCC---EEeEchhcCCChhh
Confidence 56789999999999987 9999999999999999999996554 666 67777766555655 66778889999999
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
+|+|||++.|+.++.+.|+......
T Consensus 115 vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 115 VIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEEEeCChhhhccCccCEeecCCCC
Confidence 9999999999999999998877654
No 135
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=76.26 Aligned_cols=121 Identities=21% Similarity=0.243 Sum_probs=94.4
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
-.+|+.+.+.+++|++. +.|++.|+...-.+.+.++-.|.. . + .++.+. ++..-..+++.++-.-+.+
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~-~-~--rv~a~a-------~~e~K~~ii~eLkk~~~k~ 96 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIP-V-E--RVFAGA-------DPEMKAKIIRELKKRYEKV 96 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCc-e-e--eeeccc-------CHHHHHHHHHHhcCCCcEE
Confidence 46899999999999999 999999987766666776665422 1 1 344333 2455677788887767899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhh
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~ 307 (320)
+||||+.||+.+.+++.+..+-+..++.+...+..||+++.++.|+.+.+++.
T Consensus 97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~ 149 (152)
T COG4087 97 VMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDT 149 (152)
T ss_pred EEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcc
Confidence 99999999999999999887777766666777789999999998887766543
No 136
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.87 E-value=6.8e-09 Score=105.21 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPAI 239 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~~ 239 (320)
+++||+.++++.|++.|++++++|+.+...+..+.+++|+...+. .++++++.. ..+..|+-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~--~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~ 605 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTS--QSVSGEKLDAMDDQQLSQIVPKVAVFARASPEH 605 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCC--ceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHH
Confidence 689999999999999999999999999999999999998766554 455554332 12345555
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC-CCcccccCCCeec--cCCCCChhhHH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSY-TAEEDFLNADAVF--DCIGDPPEERF 305 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~-~~~~~~~~a~~vi--~~l~el~~~l~ 305 (320)
-..+.+.++...+.+.||||+.||+.++++|++ ++..|. ..+-..+.||+++ +++..+...+.
T Consensus 606 K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdV---Gia~g~~g~~va~~aaDivl~dd~~~~i~~~i~ 671 (884)
T TIGR01522 606 KMKIVKALQKRGDVVAMTGDGVNDAPALKLADI---GVAMGQTGTDVAKEAADMILTDDDFATILSAIE 671 (884)
T ss_pred HHHHHHHHHHCCCEEEEECCCcccHHHHHhCCe---eEecCCCcCHHHHHhcCEEEcCCCHHHHHHHHH
Confidence 566666666566789999999999999999995 555564 3344446799998 66887776654
No 137
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.86 E-value=8.2e-09 Score=104.22 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=88.4
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
-+++||+.+.|+.|++.|++++++|+.+...++.+++++++.+++. +.. |+.-..++++++..++++
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~~~~-------~~~------p~~K~~~i~~l~~~~~~v 715 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDEVIA-------GVL------PDGKAEAIKRLQSQGRQV 715 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCEEEe-------CCC------HHHHHHHHHHHhhcCCEE
Confidence 3689999999999999999999999999999999999987754332 111 222344666777778899
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCee--ccCCCCChhhHH
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAV--FDCIGDPPEERF 305 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~v--i~~l~el~~~l~ 305 (320)
+||||+.||+.+++++|+. +.+|+..+..++.+|++ .+++.++...+.
T Consensus 716 ~~vGDg~nD~~al~~Agvg---ia~g~g~~~a~~~ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 716 AMVGDGINDAPALAQADVG---IAMGGGSDVAIETAAITLMRHSLMGVADALA 765 (834)
T ss_pred EEEeCCHHHHHHHHhCCee---EEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence 9999999999999999984 44477777667777765 456666666553
No 138
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.85 E-value=4.7e-09 Score=90.76 Aligned_cols=81 Identities=16% Similarity=-0.041 Sum_probs=61.6
Q ss_pred eEEeCCCCCCCC----CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCeEEEEcCCCCCcccccCCC
Q 020874 223 QIFAGDVVPRKK----PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA-------GMKCIVTKSSYTAEEDFLNAD 291 (320)
Q Consensus 223 ~i~~~d~~~~~K----P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a-------G~~~v~v~~g~~~~~~~~~a~ 291 (320)
.+..++.+...| -|+..++.++++++..+.+++||||+.+|+.+++.+ |..+|.+.++ .....|+
T Consensus 151 ~v~~g~~~~e~~p~~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~ 226 (244)
T TIGR00685 151 EVMDGKAVVELKPRFVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAK 226 (244)
T ss_pred EEEECCeEEEEeeCCCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCce
Confidence 455554433333 357999999999999999999999999999999999 6667777534 2235699
Q ss_pred eeccCCCCChhhHHhh
Q 020874 292 AVFDCIGDPPEERFDL 307 (320)
Q Consensus 292 ~vi~~l~el~~~l~~~ 307 (320)
+++++.+|+.+.|..+
T Consensus 227 ~~~~~~~~v~~~L~~l 242 (244)
T TIGR00685 227 FHLTGPQQVLEFLGLL 242 (244)
T ss_pred EeCCCHHHHHHHHHHH
Confidence 9999999987766443
No 139
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.83 E-value=3.1e-08 Score=82.35 Aligned_cols=109 Identities=19% Similarity=0.300 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCch-------HHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNE-------KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL 247 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~-------~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~ 247 (320)
.++.||+.++|+.|.+.|..+.++|..+. ....+.|+++.+...++. .+++++ |- .+
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~-~~~~~~-----K~----------~v 135 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDN-LIFTGD-----KT----------LV 135 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCC-EEEESS-----GG----------GC
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchhe-EEEecC-----CC----------eE
Confidence 68899999999999999977777775432 344566666633223332 344432 21 12
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHh
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~ 306 (320)
+.+ ++|+|++..+..+...|++.|++...++.... --..+.++.|+.+.++.
T Consensus 136 ~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~~ 187 (191)
T PF06941_consen 136 GGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLILS 187 (191)
T ss_dssp --S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHHH
T ss_pred ecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHHh
Confidence 222 89999999999999999999999877665443 45678999998877754
No 140
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.77 E-value=6.6e-08 Score=83.71 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CC------------------------
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RK------------------------ 233 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~------------------------ 233 (320)
||+.++|++|+++|++++|+||+++..+...++.+++..+|+ .+++++... ..
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFD--vII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFD--IIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcccc--EEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 899999999999999999999999999999999999998887 677665431 11
Q ss_pred ----CC-CHHHHHHHHHHcCCCC-CcEEEEecCH
Q 020874 234 ----KP-DPAIYTLAASTLGVDP-SSCVVVEDST 261 (320)
Q Consensus 234 ----KP-~~~~~~~~~~~~g~~~-~~~v~VGDs~ 261 (320)
-| .|+.....+++.|+.. ..+..|+|=.
T Consensus 229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~ 262 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 262 (303)
T ss_pred cccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence 11 3556666777777765 3445666654
No 141
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.74 E-value=1.9e-08 Score=86.85 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=74.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHH--HHHHHhcCcc-cccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT--AIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~--~~l~~~~~~~-~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
.++||+.++|++|+++|++++++||+...... ..|+.+++.. .|+ .+++++++.. ..+.++++++|..++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~--~Ii~s~~~~~-----~~l~~~~~~~~~~~~ 96 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE--MIISSGEIAV-----QMILESKKRFDIRNG 96 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc--eEEccHHHHH-----HHHHhhhhhccCCCc
Confidence 56899999999999999999999998877655 7888888776 777 7888775432 467777788899999
Q ss_pred cEEEEecCHhhHHHHHHcCC
Q 020874 253 SCVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~aG~ 272 (320)
++++|||+..|++....+|.
T Consensus 97 ~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 97 IIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred eEEEeCCcccchhhhcCCCc
Confidence 99999999999887765553
No 142
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.66 E-value=4.7e-07 Score=72.60 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=60.5
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHH---HHHHHhc--CcccccceeEEeCCC---------CCCCCC---CHHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVT---AIVSFLL--GPERAEKIQIFAGDV---------VPRKKP---DPAIY 240 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~---~~l~~~~--~~~~~~~~~i~~~d~---------~~~~KP---~~~~~ 240 (320)
.|++.++++.++++|+++.++|+.+..... ..++.+. +..+... .+++... +-..+| +.+.+
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g-~li~~~g~~~~~~~~e~i~~~~~~~K~~~l 107 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHG-PVLLSPDRLFAALHREVISKKPEVFKIACL 107 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCc-eEEEcCCcchhhhhcccccCCHHHHHHHHH
Confidence 599999999999999999999999877664 5555520 1112211 3333322 112344 44555
Q ss_pred HHHHHHcCCCCCcEE-EEecCHhhHHHHHHcCCe
Q 020874 241 TLAASTLGVDPSSCV-VVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 241 ~~~~~~~g~~~~~~v-~VGDs~~Di~~A~~aG~~ 273 (320)
+.+.+.+.-.--..+ .+||+.+|+.+=.++|+.
T Consensus 108 ~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 108 RDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 555554432222343 478889999999999997
No 143
>PLN02382 probable sucrose-phosphatase
Probab=98.65 E-value=4.7e-07 Score=83.93 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=46.8
Q ss_pred CCCCCCCCHHHHHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcC-CeEEEEcCCCCCccccc
Q 020874 229 VVPRKKPDPAIYTLAASTL---GVDPSSCVVVEDSTIGLAAAKAAG-MKCIVTKSSYTAEEDFL 288 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~---g~~~~~~v~VGDs~~Di~~A~~aG-~~~v~v~~g~~~~~~~~ 288 (320)
.++.+--|...++++++++ |++++++++|||+.||++|.+.+| ...++ ++..++.++
T Consensus 169 I~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam---~NA~~elk~ 229 (413)
T PLN02382 169 VLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMV---SNAQEELLQ 229 (413)
T ss_pred EEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEE---cCCcHHHHH
Confidence 3456667899999999999 999999999999999999999999 46665 555555443
No 144
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.63 E-value=1.8e-07 Score=93.13 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
+++||+.+.++.|+++|++++++|+.+...+..+.+++|+..++ +..+..| ++.+ ++++ .+++++
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~~~--------~~~p~~K--~~~v----~~l~-~~~~v~ 632 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDFRA--------GLLPEDK--VKAV----TELN-QHAPLA 632 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCeec--------CCCHHHH--HHHH----HHHh-cCCCEE
Confidence 68999999999999999999999999999999999999764221 1222223 3333 3444 236899
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeec--cCCCCChh
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVF--DCIGDPPE 302 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi--~~l~el~~ 302 (320)
||||+.||..+++.+++. +..++..+...+.+|+++ +++.++..
T Consensus 633 mvGDgiNDapAl~~A~vg---ia~g~~~~~a~~~adivl~~~~l~~l~~ 678 (741)
T PRK11033 633 MVGDGINDAPAMKAASIG---IAMGSGTDVALETADAALTHNRLRGLAQ 678 (741)
T ss_pred EEECCHHhHHHHHhCCee---EEecCCCHHHHHhCCEEEecCCHHHHHH
Confidence 999999999999999944 444666666666788765 44444443
No 145
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.63 E-value=7.1e-07 Score=85.77 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCeEEE
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVV--EDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~V--GDs~~Di~~A~~aG~~~v~ 276 (320)
.+-.|...++.+++.+|++.++++.| ||+.||+.|.+.+|...++
T Consensus 610 ~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 35677999999999999999999888 9999999999999998877
No 146
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=98.59 E-value=6.3e-07 Score=78.40 Aligned_cols=72 Identities=14% Similarity=0.001 Sum_probs=57.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----CCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA----GMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a----G~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.+.+.-|...++++++.+|+..+++++|||+.||+.|.+.+ |.. |.+ |+.. ..|.+.+++.+++...|.
T Consensus 169 ~p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~-vav--g~a~----~~A~~~l~~~~~v~~~L~ 241 (266)
T PRK10187 169 KPRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGIS-VKV--GTGA----TQASWRLAGVPDVWSWLE 241 (266)
T ss_pred eCCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeE-EEE--CCCC----CcCeEeCCCHHHHHHHHH
Confidence 34556789999999999999999999999999999999988 544 333 4332 358889999998888776
Q ss_pred hhh
Q 020874 306 DLA 308 (320)
Q Consensus 306 ~~~ 308 (320)
.++
T Consensus 242 ~l~ 244 (266)
T PRK10187 242 MIT 244 (266)
T ss_pred HHH
Confidence 655
No 147
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.59 E-value=1.7e-06 Score=73.85 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCeEE
Q 020874 233 KKPDPAIYTLAASTLGV--DPSSCVVVEDSTIGLAAAKAAGMKCI 275 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~--~~~~~v~VGDs~~Di~~A~~aG~~~v 275 (320)
+--|+...+.+++.+++ .++++++|||+.||+.|.+.+|+..+
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 44557788888888866 67789999999999999999998765
No 148
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.50 E-value=3.3e-06 Score=71.30 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHH---HHHHHHHhcCcccccceeEEeCCCCCCCCC----CHHHHHHHHHHc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGDVVPRKKP----DPAIYTLAASTL 247 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP----~~~~~~~~~~~~ 247 (320)
.+..|++.++++.|+++|++|.++||.+... +...|+..|...+ + .++-...-...|+ |.+....+. +-
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~--~LiLR~~~d~~~~~~~yKs~~R~~l~-~~ 194 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW-K--HLILRGLEDSNKTVVTYKSEVRKSLM-EE 194 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-C--eeeecCCCCCCchHhHHHHHHHHHHH-hC
Confidence 6788999999999999999999999998766 5566666654433 3 4443321122332 122222222 22
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
|. .=+..|||..+|+.+. .+|.++.-
T Consensus 195 GY--rIv~~iGDq~sDl~G~-~~~~RtFK 220 (229)
T TIGR01675 195 GY--RIWGNIGDQWSDLLGS-PPGRRTFK 220 (229)
T ss_pred Cc--eEEEEECCChHHhcCC-CccCceee
Confidence 22 2256889999999653 44544443
No 149
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.46 E-value=6.8e-07 Score=91.15 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccc--eeEEeCCCC----------------CCCCCCH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEK--IQIFAGDVV----------------PRKKPDP 237 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~--~~i~~~d~~----------------~~~KP~~ 237 (320)
+++||+.+.++.|++.|++++++|+.+...+....+.+|....... ...+++.+. -..+-.|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 6899999999999999999999999998889999999876432110 012222111 1122223
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccC--CCCChhhH
Q 020874 238 AIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDC--IGDPPEER 304 (320)
Q Consensus 238 ~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~--l~el~~~l 304 (320)
+--.++++.++-..+.+.|+||+.||+.|.+.|++...+ +++.+.....||+++.+ +..+.+.+
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~---g~g~~~ak~aAD~vl~dd~f~~i~~~i 682 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAM---GSGTEVAKEASDMVLADDNFATIVAAV 682 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEEC---CCCcHHHHHhcCeEEccCCHHHHHHHH
Confidence 333556666665567788999999999999999975443 55555556689999977 66655544
No 150
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.42 E-value=5.7e-07 Score=67.34 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=63.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc------C
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL------G 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~------g 248 (320)
+.+||.+.++++.++..|+-++.+|=+....+.+.|+.++...+|+. ++.- -..+| ..++.+++++. -
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy--~Vie--PhP~K--~~ML~~llr~i~~er~~~ 113 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHY--IVIE--PHPYK--FLMLSQLLREINTERNQK 113 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEE--EEec--CCChh--HHHHHHHHHHHHHhhccc
Confidence 78999999999999999999999998888889999999999999983 3321 11222 34555555544 3
Q ss_pred CCCCcEEEEecCHhh
Q 020874 249 VDPSSCVVVEDSTIG 263 (320)
Q Consensus 249 ~~~~~~v~VGDs~~D 263 (320)
+.|+++||++|..--
T Consensus 114 ikP~~Ivy~DDR~iH 128 (164)
T COG4996 114 IKPSEIVYLDDRRIH 128 (164)
T ss_pred cCcceEEEEeccccc
Confidence 689999999998743
No 151
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.40 E-value=4e-06 Score=61.91 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=50.7
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchH---HHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~---~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
++||+.++|+.|+++|.++.++||++.. .....|+.+|..--.+ .++++.. .....+++. ....+
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~--~i~ts~~---------~~~~~l~~~-~~~~~ 82 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDED--EIITSGM---------AAAEYLKEH-KGGKK 82 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GG--GEEEHHH---------HHHHHHHHH-TTSSE
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcC--EEEChHH---------HHHHHHHhc-CCCCE
Confidence 4699999999999999999999998643 3445556665543222 6666543 233334432 23456
Q ss_pred EEEEecCHhhHHHHHHcCC
Q 020874 254 CVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~ 272 (320)
++++|-. ...+.++.+|+
T Consensus 83 v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 83 VYVLGSD-GLREELREAGF 100 (101)
T ss_dssp EEEES-H-HHHHHHHHTTE
T ss_pred EEEEcCH-HHHHHHHHcCC
Confidence 7777754 55666666664
No 152
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.39 E-value=1.7e-05 Score=69.06 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 233 KKPDPAIYTLAASTLGVD--PSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~--~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
.-+|....+.+.+.++-. +-.++.+|||+||+.|...+.++.|.
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 457788888888877654 44789999999999999999988776
No 153
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.35 E-value=5.8e-07 Score=77.73 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~ 279 (320)
++..--|...++++++++++++++++++|||.||+.|. ..+...|.|.+
T Consensus 160 lP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N 208 (247)
T PF05116_consen 160 LPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN 208 (247)
T ss_dssp EETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred ccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence 45556679999999999999999999999999999999 66667777743
No 154
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.34 E-value=2.1e-06 Score=83.70 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
++.||+.+.++.|+++|+++.++|+.+...+..+.+++|..+++ . +..+ .-|.+.++. ++-....+.
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~------a-~~~P--edK~~~v~~----lq~~g~~Va 512 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFI------A-EATP--EDKIALIRQ----EQAEGKLVA 512 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEE------c-CCCH--HHHHHHHHH----HHHcCCeEE
Confidence 68999999999999999999999999999999999999764322 1 1111 112333433 333345699
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD 295 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~ 295 (320)
|+||+.||..+.+.+++...+ +...+...+.+|.++-
T Consensus 513 mvGDG~NDapAL~~AdvGiAm---~~gt~~akeaadivLl 549 (675)
T TIGR01497 513 MTGDGTNDAPALAQADVGVAM---NSGTQAAKEAANMVDL 549 (675)
T ss_pred EECCCcchHHHHHhCCEeEEe---CCCCHHHHHhCCEEEC
Confidence 999999999999999977766 4455555677888753
No 155
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1.5e-06 Score=84.92 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=84.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
-++.|++.+.++.||++|+++.++|+.++..++.+.+++|+.++.. +-.+..| .+. .++++-.-..+
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~A-------ellPedK--~~~----V~~l~~~g~~V 602 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRA-------ELLPEDK--AEI----VRELQAEGRKV 602 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhhec-------cCCcHHH--HHH----HHHHHhcCCEE
Confidence 3689999999999999999999999999999999999997644432 2222222 333 34444344679
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhhH
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
.||||+.||..+...|.+...+ |.+.+-..+.||.++- ++..++..+
T Consensus 603 amVGDGINDAPALA~AdVGiAm---G~GtDvA~eaADvvL~~~dL~~v~~ai 651 (713)
T COG2217 603 AMVGDGINDAPALAAADVGIAM---GSGTDVAIEAADVVLMRDDLSAVPEAI 651 (713)
T ss_pred EEEeCCchhHHHHhhcCeeEee---cCCcHHHHHhCCEEEecCCHHHHHHHH
Confidence 9999999999999999866555 6666666778898753 365555544
No 156
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.31 E-value=8.8e-07 Score=75.51 Aligned_cols=90 Identities=23% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH---HHHHHHHHhcCcccccceeEEeCCCCCCCC----CCHHHHHHHHHHc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAGDVVPRKK----PDPAIYTLAASTL 247 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~---~~~~~l~~~~~~~~~~~~~i~~~d~~~~~K----P~~~~~~~~~~~~ 247 (320)
.+..||+.++++.++++|++|.++||.+.. .....|+..|...... .++.++.-...+ =|..-...+.++
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~--l~lr~~~~~~~~~~~~yK~~~r~~i~~~- 190 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDH--LILRPDKDPSKKSAVEYKSERRKEIEKK- 190 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSC--GEEEEESSTSS------SHHHHHHHHHT-
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccch--hccccccccccccccccchHHHHHHHHc-
Confidence 466899999999999999999999987544 4556666666443332 333332211111 123333444443
Q ss_pred CCCCCcEEEEecCHhhHHHHHH
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKA 269 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~ 269 (320)
|.. =+.+|||..+|+..++.
T Consensus 191 Gy~--Ii~~iGD~~~D~~~~~~ 210 (229)
T PF03767_consen 191 GYR--IIANIGDQLSDFSGAKT 210 (229)
T ss_dssp TEE--EEEEEESSGGGCHCTHH
T ss_pred CCc--EEEEeCCCHHHhhcccc
Confidence 322 26799999999999443
No 157
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.29 E-value=4.4e-06 Score=81.52 Aligned_cols=113 Identities=13% Similarity=0.050 Sum_probs=83.9
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
++.||+.+.+++||++|+++.++|+.+...+..+.+++|+.+++. + -+ |+--.++.+.++-.-+-+.
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A-------~----~~--PedK~~iV~~lQ~~G~~Va 507 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVA-------E----CK--PEDKINVIREEQAKGHIVA 507 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEc-------C----CC--HHHHHHHHHHHHhCCCEEE
Confidence 689999999999999999999999999999999999997754321 1 12 2333444445444445688
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeec--cCCCCChhhH
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVF--DCIGDPPEER 304 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi--~~l~el~~~l 304 (320)
|+||+.||..+.++|.+...+ |.+.+-.++.+|.++ +++..+.+.+
T Consensus 508 MtGDGvNDAPALa~ADVGIAM---gsGTdvAkeAADiVLldd~ls~Iv~av 555 (673)
T PRK14010 508 MTGDGTNDAPALAEANVGLAM---NSGTMSAKEAANLIDLDSNPTKLMEVV 555 (673)
T ss_pred EECCChhhHHHHHhCCEEEEe---CCCCHHHHHhCCEEEcCCCHHHHHHHH
Confidence 999999999999999966555 666666677899885 3444444433
No 158
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.25 E-value=2.2e-05 Score=67.55 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=56.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHH---HHHHHhcCcccccceeEEeCCCCCCCCCCHHHHH----HHHHHc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVT---AIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYT----LAASTL 247 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~---~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~----~~~~~~ 247 (320)
.+..||+.++.+.+++.|++|.++||.++.... ..|+..|...+ + .++-.+.-...+.+.--|+ .-+.+-
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~-~--~LiLR~~~D~~~~~av~yKs~~R~~li~e 220 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTW-E--KLILKDPQDNSAENAVEYKTAARAKLIQE 220 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCc-c--eeeecCCCCCccchhHHHHHHHHHHHHHc
Confidence 677899999999999999999999999865443 44444443322 2 3443322111221111122 111122
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
|. .=+..|||..+|+.+....+.++.-+
T Consensus 221 GY--rIv~~iGDq~sDl~G~~~g~~RtFKL 248 (275)
T TIGR01680 221 GY--NIVGIIGDQWNDLKGEHRGAIRSFKL 248 (275)
T ss_pred Cc--eEEEEECCCHHhccCCCccCcceecC
Confidence 22 22568899999996554222344433
No 159
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.24 E-value=5e-05 Score=65.66 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhc--Ccccccc----eeEE------eC--C--------CCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL--GPERAEK----IQIF------AG--D--------VVPRK 233 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~--~~~~~~~----~~i~------~~--d--------~~~~~ 233 (320)
.+-+.+.++++.|++.|+++..+|.....+....++.|. +.++-.. ...+ .. . -+..+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 456899999999999999999999987776666555551 2222211 0111 00 0 01235
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH----HcCCeEEEEcCCCC
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAK----AAGMKCIVTKSSYT 282 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~----~aG~~~v~v~~g~~ 282 (320)
-+++.++..++.+.|..|+.+|||+|+..++.... ..|+.++++.+...
T Consensus 161 ~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 161 QDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred CccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEcch
Confidence 67789999999999999999999999997766544 36999998876543
No 160
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.24 E-value=5.5e-06 Score=65.57 Aligned_cols=97 Identities=22% Similarity=0.201 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce--eEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~--~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
+-+..++....++|-.|+.+|+...-.++.+-+.|...-..+.+ .++.+|. .||...--...++..++ -++
T Consensus 117 evA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk---~k~~qy~Kt~~i~~~~~----~Ih 189 (237)
T COG3700 117 EVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK---PKPGQYTKTQWIQDKNI----RIH 189 (237)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCC---CCcccccccHHHHhcCc----eEE
Confidence 34567777778889999999987654444433333111111111 3444443 23332222334555555 489
Q ss_pred EecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 257 VEDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 257 VGDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
.|||.+|+.+|+++|++.|-+.+..+
T Consensus 190 YGDSD~Di~AAkeaG~RgIRilRAaN 215 (237)
T COG3700 190 YGDSDNDITAAKEAGARGIRILRAAN 215 (237)
T ss_pred ecCCchhhhHHHhcCccceeEEecCC
Confidence 99999999999999999888765433
No 161
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.21 E-value=7.1e-06 Score=80.19 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=82.5
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
++.||+.+.++.|+++|+++.++|+.+...+..+.+++|+.+++. +. . |+--..+.+.++-..+-+.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A-------~~----~--PedK~~iV~~lQ~~G~~Va 511 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLA-------EA----T--PEDKLALIRQEQAEGRLVA 511 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEc-------cC----C--HHHHHHHHHHHHHcCCeEE
Confidence 578999999999999999999999999999999999997743221 11 2 2222334444443445688
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhhH
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
|+||+.||..+.+.|.+...+ +.+.+-.++.+|.++- ++..+.+.+
T Consensus 512 MtGDGvNDAPALa~ADVGIAM---gsGTdvAkeAADiVLldd~~s~Iv~av 559 (679)
T PRK01122 512 MTGDGTNDAPALAQADVGVAM---NSGTQAAKEAGNMVDLDSNPTKLIEVV 559 (679)
T ss_pred EECCCcchHHHHHhCCEeEEe---CCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 999999999999999976666 6566666678998753 344444333
No 162
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.15 E-value=6.2e-06 Score=84.51 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=86.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPAI 239 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~~ 239 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+..-.. .++++++.. ..+-.|+-
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~--~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~ 656 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG--LAMEGKEFRRLVYEEMDPILPKLRVLARSSPLD 656 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCc--eEeeHHHhhhCCHHHHHHHhccCeEEEECCHHH
Confidence 688999999999999999999999999999999999997653221 233332211 01122333
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCCcccccCCCeecc--CCCCChhhH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSS-YTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g-~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
-..+.+.++-.-+.+.|+||+.||..+.++|.+...+ | .+.+-..+.||+++. +|..+...+
T Consensus 657 K~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAm---g~~gtdvAk~aADivL~dd~f~~I~~~i 721 (941)
T TIGR01517 657 KQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSM---GISGTEVAKEASDIILLDDNFASIVRAV 721 (941)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceec---CCCccHHHHHhCCEEEecCCHHHHHHHH
Confidence 3334444433345689999999999999999966655 5 445556678999876 555555544
No 163
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00011 Score=60.86 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=87.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc---cccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE---RAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~---~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
..+|+++...++.-+..|++++|.|.++...+..+...-+-.+ +.+ ..+.. .+ -.|-.-..|..+.+..|.++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~--gyfDt-~i-G~K~e~~sy~~I~~~Ig~s~ 197 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYIS--GYFDT-TI-GLKVESQSYKKIGHLIGKSP 197 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhh--hhhhc-cc-cceehhHHHHHHHHHhCCCh
Confidence 4689999999999999999999999999887665554432111 111 22211 12 35667788999999999999
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEE-cCCCCCcccccC-CCeeccCCCCC
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVT-KSSYTAEEDFLN-ADAVFDCIGDP 300 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v-~~g~~~~~~~~~-a~~vi~~l~el 300 (320)
.++++.-|.+....+|+.+|+.+..+ +.|+....+-+. .=.++.+|..|
T Consensus 198 ~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 198 REILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEIL 248 (254)
T ss_pred hheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhh
Confidence 99999999999999999999997775 445554443332 22355666554
No 164
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.10 E-value=8.6e-06 Score=82.76 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=86.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPAI 239 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~~ 239 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+.. + .++++.+.. ..+-.|+-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~--~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--G--EVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--c--CceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 678999999999999999999999999999999999997731 1 344443321 11222333
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhhH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
-.++.+.++-.-+-+.|+||+.||..+.+.|.+...+ |.+.+-..+.||.++- ++..+...+
T Consensus 626 K~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAm---g~gtdvAkeaADiVLldd~~~~I~~ai 689 (902)
T PRK10517 626 KERIVTLLKREGHVVGFMGDGINDAPALRAADIGISV---DGAVDIAREAADIILLEKSLMVLEEGV 689 (902)
T ss_pred HHHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEe---CCcCHHHHHhCCEEEecCChHHHHHHH
Confidence 3444444443445688999999999999999976655 5555556678998873 444444433
No 165
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.08 E-value=1.4e-05 Score=82.41 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=87.5
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccc-c-------ceeEEeCCCCC----------------
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERA-E-------KIQIFAGDVVP---------------- 231 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~-~-------~~~i~~~d~~~---------------- 231 (320)
++.|++.++++.|++.|++++++|+.+...+..+.+++|+..-. . ...++++.++.
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 78999999999999999999999999999999999999774321 0 01344443321
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCCcccccCCCeeccC--CCCChhhH
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSS-YTAEEDFLNADAVFDC--IGDPPEER 304 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g-~~~~~~~~~a~~vi~~--l~el~~~l 304 (320)
..+-.|+--..+.+.++-..+.+.|+||+.||..+.+.|.+...+ | .+.+-..+.||+++.+ |..+...+
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAm---g~~gt~vak~aADivl~dd~f~~I~~~i 798 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAM---GINGSDVAKDASDIVLSDDNFASILNAI 798 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEec---CCCccHHHHHhcCEEEecCCHHHHHHHH
Confidence 122233333344444443445688999999999999999976665 4 3344455689998854 66665544
No 166
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.08 E-value=1.1e-05 Score=82.05 Aligned_cols=122 Identities=18% Similarity=0.107 Sum_probs=87.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPAI 239 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~~ 239 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+.. + .++++.+.. ..+-.|+-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~--~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--G--EPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--C--CccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 688999999999999999999999999999999999997741 1 334333321 11123333
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeec--cCCCCChhhH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVF--DCIGDPPEER 304 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi--~~l~el~~~l 304 (320)
-.++.+.++-.-+-+.|+||+.||..+.+.|.+...+ |.+.+-..+.||.++ ++|..+...+
T Consensus 626 K~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAm---g~gtdvAkeaADiVLldd~f~~Iv~ai 689 (903)
T PRK15122 626 KSRVLKALQANGHTVGFLGDGINDAPALRDADVGISV---DSGADIAKESADIILLEKSLMVLEEGV 689 (903)
T ss_pred HHHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEe---CcccHHHHHhcCEEEecCChHHHHHHH
Confidence 4444555444445688999999999999999976555 545555567899987 4555555544
No 167
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.07 E-value=1.9e-05 Score=80.11 Aligned_cols=122 Identities=15% Similarity=0.100 Sum_probs=84.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPAI 239 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~~ 239 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+.. . .++++.+.. ..+-.|+-
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~--~--~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA--N--DFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC--C--CeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 578999999999999999999999999999999999997742 1 233332221 01112323
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhhH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEER 304 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~l 304 (320)
-.++.+.++-.-+.+.|+||+.||..+.+.|.+...+ +.+.+-..+.||.++- +|..+...+
T Consensus 591 K~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAm---g~gtdvAk~aADiVLldd~~~~I~~ai 654 (867)
T TIGR01524 591 KSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISV---DTAADIAKEASDIILLEKSLMVLEEGV 654 (867)
T ss_pred HHHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEe---CCccHHHHHhCCEEEecCChHHHHHHH
Confidence 3333444433445688999999999999999977665 5455555678998873 444444433
No 168
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.07 E-value=0.00058 Score=64.73 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH-hcCccccc------ceeEEeCCCCCCCCC-C-HHHHHHHHHHc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGPERAE------KIQIFAGDVVPRKKP-D-PAIYTLAASTL 247 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~-~~~~~~~~------~~~i~~~d~~~~~KP-~-~~~~~~~~~~~ 247 (320)
+++.+.+.+ ++.|.. +|+|...+.+++..++. +|...... ..+.+++...+. .+ . ..-..++.+.+
T Consensus 111 l~~~a~~~~---~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~-~~c~Ge~Kv~rl~~~~ 185 (497)
T PLN02177 111 VHPETWRVF---NSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKP-GVLVGDHKRDAVLKEF 185 (497)
T ss_pred cCHHHHHHH---HhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCC-CCCccHHHHHHHHHHh
Confidence 566665544 566754 99999999999999976 55442211 013444432221 01 0 11223333556
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
|.+... +..|||.+|..+...++-..+.
T Consensus 186 g~~~~~-~aYgDS~sD~plL~~a~e~y~V 213 (497)
T PLN02177 186 GDALPD-LGLGDRETDHDFMSICKEGYMV 213 (497)
T ss_pred CCCCce-EEEECCccHHHHHHhCCccEEe
Confidence 655444 8999999999999999966554
No 169
>PTZ00174 phosphomannomutase; Provisional
Probab=98.05 E-value=3.8e-05 Score=66.49 Aligned_cols=47 Identities=11% Similarity=-0.038 Sum_probs=40.0
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEc
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVED----STIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGD----s~~Di~~A~~aG~~~v~v~ 278 (320)
|.++.+--|...++.++++ +++++.||| +.||++|.+.++..++.|.
T Consensus 181 eI~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 181 DVFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVK 231 (247)
T ss_pred EeeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeC
Confidence 4456677789999999988 589999999 8999999999888777775
No 170
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.05 E-value=1.3e-05 Score=80.27 Aligned_cols=120 Identities=18% Similarity=0.098 Sum_probs=83.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCC----------------------CCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV----------------------PRK 233 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~----------------------~~~ 233 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.+++|+... +++++++ -..
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGTN-----IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC-----CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999977431 1111111 011
Q ss_pred CCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc--CCCCChhh
Q 020874 234 KPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD--CIGDPPEE 303 (320)
Q Consensus 234 KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~--~l~el~~~ 303 (320)
+-.|+--..+.+.++-.-+.+.|+||+.||..+.+.|.+...+ +...+-.++.||.++- ++..+...
T Consensus 517 r~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm---~~gtdvAkeaADivLl~d~l~~I~~a 585 (755)
T TIGR01647 517 EVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAV---AGATDAARSAADIVLTEPGLSVIVDA 585 (755)
T ss_pred ecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEe---cCCcHHHHHhCCEEEEcCChHHHHHH
Confidence 1223333444444444456689999999999999999977555 4455555677888753 34444433
No 171
>PLN02423 phosphomannomutase
Probab=98.02 E-value=1.2e-05 Score=69.47 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=39.0
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 020874 228 DVVPRKKPDPAIYTLAASTLGVDPSSCVVVED----STIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 228 d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGD----s~~Di~~A~~aG~~~v~v~~ 279 (320)
|.+..+--|..+++.++ +++++++||| +.||++|.+.-|+.++-|.+
T Consensus 182 Di~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 182 DVFPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS 232 (245)
T ss_pred EEeeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence 44566777788887776 8999999999 69999999999999887653
No 172
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.02 E-value=6e-05 Score=62.90 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=58.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHH----HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKA----VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~----~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
..+.||+.|+++..-++|..|..+||..... ...-|+..|+.......-++- ...|++..-++.+.+ .
T Consensus 121 sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk----k~~k~Ke~R~~~v~k----~ 192 (274)
T COG2503 121 SKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK----KDKKSKEVRRQAVEK----D 192 (274)
T ss_pred cccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe----eCCCcHHHHHHHHhh----c
Confidence 5678999999999999999999999986554 445566665554444322232 234666666666555 3
Q ss_pred CCcEEEEecCHhhHHH
Q 020874 251 PSSCVVVEDSTIGLAA 266 (320)
Q Consensus 251 ~~~~v~VGDs~~Di~~ 266 (320)
..-++.|||+..|...
T Consensus 193 ~~iVm~vGDNl~DF~d 208 (274)
T COG2503 193 YKIVMLVGDNLDDFGD 208 (274)
T ss_pred cceeeEecCchhhhcc
Confidence 3448899999987643
No 173
>PLN02645 phosphoglycolate phosphatase
Probab=97.99 E-value=5.5e-05 Score=67.79 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=66.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHH---HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
.++||+.++|+.|+++|++++++||++... ....|+.+|....++ .++++.. .....++..+....
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~--~I~ts~~---------~~~~~l~~~~~~~~ 112 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEE--EIFSSSF---------AAAAYLKSINFPKD 112 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChh--hEeehHH---------HHHHHHHhhccCCC
Confidence 457999999999999999999999988443 344456666543343 5555532 44455566565555
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEE
Q 020874 253 SCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
+.|+|+++..+.+.++.+|+.++.
T Consensus 113 ~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 113 KKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred CEEEEEcCHHHHHHHHHCCCEEec
Confidence 579999999999999999998775
No 174
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.96 E-value=9.5e-05 Score=73.95 Aligned_cols=71 Identities=13% Similarity=-0.070 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhh
Q 020874 231 PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~ 307 (320)
+.+--|..+++.+++ +.+++.+++|||+.||..|.+.++.....+.-|+. ...|++++++.+|+...|..+
T Consensus 653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~----~s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG----ESRARYRLPSQREVRELLRRL 723 (726)
T ss_pred ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECCC----CCcceEeCCCHHHHHHHHHHH
Confidence 455668999999988 77888999999999999999998533333333543 246889999988866655544
No 175
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.92 E-value=4.5e-05 Score=74.67 Aligned_cols=113 Identities=18% Similarity=0.223 Sum_probs=82.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
++.||+...++.|+++|++++++|+.+...++.+.+++| ++ .+-++..+..| .+.++.+.+ ....+.
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG----i~---~V~aev~P~~K--~~~Ik~lq~----~~~~Va 789 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG----ID---NVYAEVLPEQK--AEKIKEIQK----NGGPVA 789 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC----cc---eEEeccCchhh--HHHHHHHHh----cCCcEE
Confidence 578999999999999999999999999999999999986 32 33344444444 445554433 346799
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeec--cCCCCChhhH
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVF--DCIGDPPEER 304 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi--~~l~el~~~l 304 (320)
||||+.||-.+...|.+.-.. +.+.+-..+.||+++ +++.+++..+
T Consensus 790 MVGDGINDaPALA~AdVGIai---g~gs~vAieaADIVLmrn~L~~v~~ai 837 (951)
T KOG0207|consen 790 MVGDGINDAPALAQADVGIAI---GAGSDVAIEAADIVLMRNDLRDVPFAI 837 (951)
T ss_pred EEeCCCCccHHHHhhccceee---ccccHHHHhhCCEEEEccchhhhHHHH
Confidence 999999999999888765444 444555556788763 5555555443
No 176
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.88 E-value=0.00021 Score=56.62 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHH---HHHHHHh--cCcccccceeEEeCC--------CCCCCCCCHHHHHHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAV---TAIVSFL--LGPERAEKIQIFAGD--------VVPRKKPDPAIYTLAA 244 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~---~~~l~~~--~~~~~~~~~~i~~~d--------~~~~~KP~~~~~~~~~ 244 (320)
.+|+.++.+.++++|+++..+|..+.-.. +..|+.+ .+..+.+...+++.+ ++-.. +|+.|+..+
T Consensus 29 h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~--~p~~fK~~~ 106 (157)
T PF08235_consen 29 HPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISK--DPEEFKIAC 106 (157)
T ss_pred hhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhcccccc--ChHHHHHHH
Confidence 49999999999999999999999875443 3344443 112333332233322 22223 444444332
Q ss_pred -----HHcCCCCC-cEEEEecCHhhHHHHHHcCCe
Q 020874 245 -----STLGVDPS-SCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 245 -----~~~g~~~~-~~v~VGDs~~Di~~A~~aG~~ 273 (320)
..+..... =...+|+..+|+.+=+++|++
T Consensus 107 L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip 141 (157)
T PF08235_consen 107 LRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence 22221111 134679999999999999997
No 177
>PLN02580 trehalose-phosphatase
Probab=97.85 E-value=0.0002 Score=65.27 Aligned_cols=71 Identities=15% Similarity=0.041 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCc---EEEEecCHhhHHHHHHc-----CCeEEEEcCCCCCcccccCCCeeccCCCCChhhH
Q 020874 233 KKPDPAIYTLAASTLGVDPSS---CVVVEDSTIGLAAAKAA-----GMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEER 304 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~---~v~VGDs~~Di~~A~~a-----G~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l 304 (320)
+--|...++++++.+|+...+ .++|||..+|..|.+.+ |+. |.+. +... ...|.+.+++.+|+.+.|
T Consensus 299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vg--n~~~--~t~A~y~L~dp~eV~~~L 373 (384)
T PLN02580 299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVS--SVPK--ESNAFYSLRDPSEVMEFL 373 (384)
T ss_pred CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEe--cCCC--CccceEEcCCHHHHHHHH
Confidence 456799999999999987653 38999999999999963 433 3333 2222 246899999999998888
Q ss_pred Hhhh
Q 020874 305 FDLA 308 (320)
Q Consensus 305 ~~~~ 308 (320)
..+.
T Consensus 374 ~~L~ 377 (384)
T PLN02580 374 KSLV 377 (384)
T ss_pred HHHH
Confidence 7665
No 178
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.85 E-value=4.8e-05 Score=60.83 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=61.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc-ccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP-ERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~-~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
..++||+.++|+.|++. +.++|+|++...++..+++.++.. .+|.. .+++.++.. .+.. +.+-..+|.+.+.
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~-ri~~rd~~~--~~~~---KdL~~i~~~d~~~ 129 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGD-RIISRDESG--SPHT---KSLLRLFPADESM 129 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeecc-EEEEeccCC--CCcc---ccHHHHcCCCccc
Confidence 67899999999999965 999999999999999999999666 36632 566666543 1111 1121346788899
Q ss_pred EEEEecCHhh
Q 020874 254 CVVVEDSTIG 263 (320)
Q Consensus 254 ~v~VGDs~~D 263 (320)
+|+|+|++.=
T Consensus 130 vvivDd~~~~ 139 (156)
T TIGR02250 130 VVIIDDREDV 139 (156)
T ss_pred EEEEeCCHHH
Confidence 9999999843
No 179
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.82 E-value=6.6e-05 Score=77.45 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=84.8
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccccc----------------------ceeEEeCCCCC--
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE----------------------KIQIFAGDVVP-- 231 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~----------------------~~~i~~~d~~~-- 231 (320)
++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+..-.. ...++++.+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 678999999999999999999999999999999999887642110 00244443221
Q ss_pred ----------------CCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC-CCcccccCCCeec
Q 020874 232 ----------------RKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSY-TAEEDFLNADAVF 294 (320)
Q Consensus 232 ----------------~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~-~~~~~~~~a~~vi 294 (320)
..+-.|+--.++.+.++-...-+.|+||+.||+.|.+.|.+...+ |. +.+-..+.||+++
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiam---g~~G~~vak~aADivL 724 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM---GIAGSDVSKQAADMIL 724 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceec---CCcccHHHHHhhceEE
Confidence 122233333334444433334688999999999999999976655 53 3444556789987
Q ss_pred cC--CCCChhhH
Q 020874 295 DC--IGDPPEER 304 (320)
Q Consensus 295 ~~--l~el~~~l 304 (320)
.+ |.-+...+
T Consensus 725 ~dd~f~~Iv~ai 736 (997)
T TIGR01106 725 LDDNFASIVTGV 736 (997)
T ss_pred ecCCHHHHHHHH
Confidence 65 55555443
No 180
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=97.76 E-value=0.00065 Score=68.57 Aligned_cols=72 Identities=13% Similarity=0.004 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHH---HcCCCCCcEEEEecCHhhHHHHHHcCC-------------eEEEEcCCCCCcccccCCCeec
Q 020874 231 PRKKPDPAIYTLAAS---TLGVDPSSCVVVEDSTIGLAAAKAAGM-------------KCIVTKSSYTAEEDFLNADAVF 294 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~---~~g~~~~~~v~VGDs~~Di~~A~~aG~-------------~~v~v~~g~~~~~~~~~a~~vi 294 (320)
+.+--|...++.+++ .+|..++.+++|||+.||..|.+.++- -+|-| |.. ...|.+.+
T Consensus 758 p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~V--G~~----~S~A~y~L 831 (854)
T PLN02205 758 PQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTV--GQK----PSKAKYYL 831 (854)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEE--CCC----CccCeEec
Confidence 455667888888875 468999999999999999999998862 22333 321 24688899
Q ss_pred cCCCCChhhHHhhh
Q 020874 295 DCIGDPPEERFDLA 308 (320)
Q Consensus 295 ~~l~el~~~l~~~~ 308 (320)
++.+|+.+.|..+.
T Consensus 832 ~d~~eV~~lL~~L~ 845 (854)
T PLN02205 832 DDTAEIVRLMQGLA 845 (854)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988877766
No 181
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00015 Score=74.03 Aligned_cols=130 Identities=18% Similarity=0.109 Sum_probs=87.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----------------CCCCCHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----------------RKKPDPA 238 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----------------~~KP~~~ 238 (320)
-++.++++++++.|++.|+++.++|+.+...+..+-+++|...-.....++++.+.. ..+-.|+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~ 625 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPE 625 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHH
Confidence 478999999999999999999999999999999999999754433201255554432 1222344
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
--.++.+.++-.-.-+.|.||+.||..|.+.|.+...+.. .+.+..++.+|.+ -.+|-...+.+.+
T Consensus 626 qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~--~Gtdaak~Aadiv--l~dd~~~~i~~av 691 (917)
T COG0474 626 QKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGG--EGTDAAKEAADIV--LLDDNFATIVLAV 691 (917)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEecc--cHHHHHHhhcceE--eecCcHHHHHHHH
Confidence 4444455554454567899999999999999997775532 3344444567665 3344444444444
No 182
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0017 Score=51.15 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC-cccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~-~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
..++...|..++++ .+++.+|....+..+..-..+.. ...++...+++. ..| -.+.+..+++ ++
T Consensus 74 ~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~----h~K------V~~vrth~id----lf 138 (194)
T COG5663 74 AQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGL----HHK------VEAVRTHNID----LF 138 (194)
T ss_pred HHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhcc----ccc------chhhHhhccC----cc
Confidence 47788888999887 78888888766554444333311 223342233322 223 2345667775 88
Q ss_pred EecCH-hhHHHHHHcCCeEEEEcCCCCCcc
Q 020874 257 VEDST-IGLAAAKAAGMKCIVTKSSYTAEE 285 (320)
Q Consensus 257 VGDs~-~Di~~A~~aG~~~v~v~~g~~~~~ 285 (320)
+.|+. |=++.|+++|++.+.++..++...
T Consensus 139 ~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 139 FEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred ccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 99998 788889999999999998777654
No 183
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.63 E-value=0.0012 Score=51.11 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCCc
Q 020874 249 VDPSSCVVVEDST-IGLAAAKAAGMKCIVTKSSYTAE 284 (320)
Q Consensus 249 ~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v~~g~~~~ 284 (320)
..+.+++||||.. +|+.+|...|-..||+..|-...
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~ 173 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE 173 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence 5789999999999 89999999999999998876543
No 184
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.56 E-value=0.00025 Score=54.26 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~ 206 (320)
+.+++.+.|+.|+++|+.++++|+.+....
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 458888999999999999999999876543
No 185
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.49 E-value=0.00011 Score=61.49 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 229 VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 229 ~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
..+.+.+|+..++.+++++|++++++++|||+.||+.+++.+|+..++
T Consensus 157 v~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 157 VLPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred EecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 346788999999999999999999999999999999999999987653
No 186
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.48 E-value=0.00076 Score=61.91 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCC----CCCCCCHHHHHHHHHHcCCCCCc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV----PRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~----~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
|-...+.+..|+++|+-++|+|-++.+.+..+++.+. + .++.-+++ -.+.|+.+-++.+++++|+..+.
T Consensus 257 fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp-----~--MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dS 329 (574)
T COG3882 257 FKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP-----D--MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDS 329 (574)
T ss_pred HHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC-----C--eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccc
Confidence 4556688899999999999999999888888888762 1 23333322 36889999999999999999999
Q ss_pred EEEEecCHhhHHHHHHcCC
Q 020874 254 CVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~ 272 (320)
.||++|++...+--++-+-
T Consensus 330 mvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 330 MVFIDDNPAERELVKRELP 348 (574)
T ss_pred eEEecCCHHHHHHHHhcCc
Confidence 9999999988888887764
No 187
>PLN02151 trehalose-phosphatase
Probab=97.47 E-value=0.00064 Score=61.26 Aligned_cols=72 Identities=17% Similarity=-0.007 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHcCCCCC---cEEEEecCHhhHHHHHHcCC----eEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 233 KKPDPAIYTLAASTLGVDPS---SCVVVEDSTIGLAAAKAAGM----KCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~---~~v~VGDs~~Di~~A~~aG~----~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.--|...++.+++.++..-. -.||+||..+|-.+.+.+.- -.|.|..+ . ....|.+.+++.+|+.+.|.
T Consensus 267 ~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~--~--k~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 267 KWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKY--A--KETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred CCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccC--C--CCCcceEeCCCHHHHHHHHH
Confidence 34578999999999876532 27999999999888876521 13334321 1 12479999999999988887
Q ss_pred hhh
Q 020874 306 DLA 308 (320)
Q Consensus 306 ~~~ 308 (320)
.+.
T Consensus 343 ~L~ 345 (354)
T PLN02151 343 RLV 345 (354)
T ss_pred HHH
Confidence 665
No 188
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.47 E-value=0.00025 Score=73.76 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=78.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce---------------------------------
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--------------------------------- 222 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~--------------------------------- 222 (320)
++.||+.+.++.|++.|++++++|+.+...+..+.+..++.......
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 710 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLG 710 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhc
Confidence 68899999999999999999999998888777777666554321110
Q ss_pred ------eEEeCCCCC----------------------CCCCCHHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCe
Q 020874 223 ------QIFAGDVVP----------------------RKKPDPAIYTLAASTLGVD-PSSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 223 ------~i~~~d~~~----------------------~~KP~~~~~~~~~~~~g~~-~~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
-++.++... ..+-.|.--..+.+.+.-. ...+.++||+.||+.|.++|.+.
T Consensus 711 ~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~AdVG 790 (1057)
T TIGR01652 711 DSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVG 790 (1057)
T ss_pred cCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhcCee
Confidence 122222110 0011111111122222112 45689999999999999999866
Q ss_pred EEEEcCCCCCcccccCCCeeccCCCCChhhH
Q 020874 274 CIVTKSSYTAEEDFLNADAVFDCIGDPPEER 304 (320)
Q Consensus 274 ~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l 304 (320)
. ++.+... ......||+++.++..|...+
T Consensus 791 I-gi~g~eg-~qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 791 V-GISGKEG-MQAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred e-EecChHH-HHHHHhhhhhhhhHHHHHHHH
Confidence 5 4432211 123357999998877666554
No 189
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.43 E-value=0.0081 Score=49.94 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~ 215 (320)
.++.||+.+.++.|.+. +.-+++|..-.+++....+.+|.
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCC
Confidence 67889999999999887 66666676666777777666654
No 190
>PLN03017 trehalose-phosphatase
Probab=97.41 E-value=0.00026 Score=63.98 Aligned_cols=72 Identities=14% Similarity=-0.038 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHcCCCC---CcEEEEecCHhhHHHHHHcC----CeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 233 KKPDPAIYTLAASTLGVDP---SSCVVVEDSTIGLAAAKAAG----MKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~---~~~v~VGDs~~Di~~A~~aG----~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.--|...++.+++.+|... .-.||+||..+|-.+.+.+. --.|.| |... ....|.+.+++.+|+.+.|.
T Consensus 281 ~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~V--G~~~--k~T~A~y~L~dp~eV~~fL~ 356 (366)
T PLN03017 281 EWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILV--SKFP--KDTDASYSLQDPSEVMDFLA 356 (366)
T ss_pred CCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEE--CCCC--CCCcceEeCCCHHHHHHHHH
Confidence 3467899999999988653 34799999999988888763 123444 3221 12578999999999988877
Q ss_pred hhh
Q 020874 306 DLA 308 (320)
Q Consensus 306 ~~~ 308 (320)
.++
T Consensus 357 ~L~ 359 (366)
T PLN03017 357 RLV 359 (366)
T ss_pred HHH
Confidence 665
No 191
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.41 E-value=0.0012 Score=63.27 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
++.|++.+.++.|++.|++++++|+.+.......-+.++. + +. - .|+.-..+.+++.-....+.
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi---------~-~~----~--~p~~K~~~v~~l~~~g~~v~ 410 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGI---------F-AR----V--TPEEKAALVEALQKKGRVVA 410 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCc---------e-ec----c--CHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999999999999999999998888888753 1 11 1 22222333443333336799
Q ss_pred EEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChh
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPE 302 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~ 302 (320)
||||+.||..+.+.+++...+ + ....+|.++.+ +++..
T Consensus 411 ~vGDg~nD~~al~~Advgia~---~-----a~~~adivl~~-~~l~~ 448 (499)
T TIGR01494 411 MTGDGVNDAPALKKADVGIAM---G-----AKAAADIVLLD-DNLST 448 (499)
T ss_pred EECCChhhHHHHHhCCCcccc---c-----hHHhCCeEEec-CCHHH
Confidence 999999999999999866333 2 34568988876 44443
No 192
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00062 Score=66.42 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=80.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccce--eEEeCCCCC----------------CCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKI--QIFAGDVVP----------------RKKPD 236 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~--~i~~~d~~~----------------~~KP~ 236 (320)
-+|+|++.+.++.+++.|++|.++|+.+...+..+.+++|+....++. ..+++.++. ..+-.
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~ 662 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAE 662 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecC
Confidence 368999999999999999999999999999999999998754433311 334443321 01122
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCCcccccCCCeec
Q 020874 237 PAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSS-YTAEEDFLNADAVF 294 (320)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g-~~~~~~~~~a~~vi 294 (320)
|..-.++.+.++-.-+=+-|-||+.||..+.+.|.+...| | .+.+-.++.+|.|+
T Consensus 663 P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAM---G~~GTdVaKeAsDMVL 718 (972)
T KOG0202|consen 663 PQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAM---GISGTDVAKEASDMVL 718 (972)
T ss_pred chhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceee---cCCccHhhHhhhhcEE
Confidence 3333344444443445577999999999999999976665 6 44555556677664
No 193
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.33 E-value=0.0011 Score=61.90 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc---------ccccceeEEeCCC-----------------
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP---------ERAEKIQIFAGDV----------------- 229 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~---------~~~~~~~i~~~d~----------------- 229 (320)
..-|.+..+|+.||+.|.++.++||.+-..++..+..+.+. ++|| .|++.-.
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFD--vVIv~A~KP~FF~~~~pfr~vd~~ 260 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFD--VVIVDARKPGFFTEGRPFREVDTE 260 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCEC--EEEES--CCHHHCT---EEEEETT
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhee--EEEEcCCCCcccCCCCceEEEECC
Confidence 34678999999999999999999999999999999998544 4566 4443210
Q ss_pred CCC---C------CCC----HHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHc-CCeEEEEcC
Q 020874 230 VPR---K------KPD----PAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAA-GMKCIVTKS 279 (320)
Q Consensus 230 ~~~---~------KP~----~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~a-G~~~v~v~~ 279 (320)
.+. . ++. .--...+++.+|+...+++||||+. .|+...+.. |+.++.|-.
T Consensus 261 ~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 261 TGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp TSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 010 0 000 0114556777899989999999999 799988886 999999754
No 194
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=97.31 E-value=0.057 Score=48.35 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=45.6
Q ss_pred cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 214 LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 214 ~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
++...|....|++.-.+ + |...|+++.+++|- .-.-|+|||+...-.+|++..|+++-+.
T Consensus 392 gLg~~fpiENIYSa~ki--G--KescFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~ 451 (468)
T KOG3107|consen 392 GLGSSFPIENIYSATKI--G--KESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRIS 451 (468)
T ss_pred hcCCcccchhhhhhhhc--c--HHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeec
Confidence 44445544455555433 2 47889999999997 5567889999999999999999998775
No 195
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.27 E-value=0.0018 Score=59.06 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=81.1
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCC--chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~--~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
+.....++.+++.++|.+|.++|+- +....+..|...|. + +..+.++.+.+....|-....|..+++.-++++..+
T Consensus 100 pn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~-d-~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w 177 (635)
T COG5610 100 PNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGP-D-FNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKW 177 (635)
T ss_pred ccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCC-C-ccCceeeecceeehhcccchHHHHHHhhcCCChhhe
Confidence 3445689999999999999999974 55556666666532 2 233368888888889999999999999999999999
Q ss_pred EEEecCH-hhHHHHHHcCCeEEEE
Q 020874 255 VVVEDST-IGLAAAKAAGMKCIVT 277 (320)
Q Consensus 255 v~VGDs~-~Di~~A~~aG~~~v~v 277 (320)
+++||+. .|..++++.|+.+...
T Consensus 178 ~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 178 IHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred EEecCchhhhhcCccccchhHHHH
Confidence 9999999 6999999999988764
No 196
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.23 E-value=0.0016 Score=68.02 Aligned_cols=52 Identities=6% Similarity=-0.009 Sum_probs=37.5
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.-++++||+.||+.|.++|.+.. ++.+..+. .....+|+.|..|..|...|+
T Consensus 872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG~EG~-qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 872 DMTLAIGDGANDVSMIQMADVGV-GISGQEGR-QAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cEEEEECCCcchHHHHHhcCeee-eecCchhH-HHHHhhccchhhhHHHHHHHH
Confidence 45899999999999999997654 44322211 223479999999888776654
No 197
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.21 E-value=0.0037 Score=65.20 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
++.|++.+.++.|++.|+++.++|+.+...+..+.++.|+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIV 696 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 68999999999999999999999999999999999998774
No 198
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0011 Score=61.41 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=78.4
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
+-||++|-+++||++|++-+.+|+.++-....+.++.|..++.. ..||... ..+.++.+..-.=+-|
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDdfiA-----------eatPEdK--~~~I~~eQ~~grlVAM 514 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFIA-----------EATPEDK--LALIRQEQAEGRLVAM 514 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchhhhh-----------cCChHHH--HHHHHHHHhcCcEEEE
Confidence 56999999999999999999999999888888888876654432 2344332 3344555545556789
Q ss_pred EecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 257 VEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 257 VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
.||+.||..+..+|.+...| ..+....++.++.| +++--+..|++.+
T Consensus 515 tGDGTNDAPALAqAdVg~AM---NsGTqAAkEAaNMV--DLDS~PTKlievV 561 (681)
T COG2216 515 TGDGTNDAPALAQADVGVAM---NSGTQAAKEAANMV--DLDSNPTKLIEVV 561 (681)
T ss_pred cCCCCCcchhhhhcchhhhh---ccccHHHHHhhccc--ccCCCccceehHh
Confidence 99999999999999876665 33444444455554 4444444444443
No 199
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.11 E-value=0.0069 Score=50.10 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccc--ccceeEEeCC--------CCC--CCCCCHHHHHHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER--AEKIQIFAGD--------VVP--RKKPDPAIYTLAA 244 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~--~~~~~i~~~d--------~~~--~~KP~~~~~~~~~ 244 (320)
..|++.++|+.+.+. +.|+|-|.....+++.++..++.... +....+.... ..+ .-|+ +..+-
T Consensus 46 kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~lw 120 (195)
T TIGR02245 46 MRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGVIW 120 (195)
T ss_pred eCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHHhh
Confidence 369999999999994 99999999999999999998854321 1100111111 001 1232 22222
Q ss_pred HHcC--CCCCcEEEEecCHhhHHHHHHcCC
Q 020874 245 STLG--VDPSSCVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 245 ~~~g--~~~~~~v~VGDs~~Di~~A~~aG~ 272 (320)
+++| .+.+++|+|+|++.....=-.-|+
T Consensus 121 ~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i 150 (195)
T TIGR02245 121 ALLPEFYSMKNTIMFDDLRRNFLMNPQNGL 150 (195)
T ss_pred hhcccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence 3454 377899999999965443333343
No 200
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.01 E-value=0.0015 Score=53.96 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHcC-CCCCc-EEEEecCHhhHHHHHHcCCeEEE
Q 020874 239 IYTLAASTLG-VDPSS-CVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 239 ~~~~~~~~~g-~~~~~-~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
....+++.+. ....+ ++-+||++||+.+.......++.
T Consensus 195 Aa~~ll~~y~rl~~~r~t~~~GDg~nD~Pl~ev~d~AfiV 234 (274)
T COG3769 195 AANWLLETYRRLGGARTTLGLGDGPNDAPLLEVMDYAFIV 234 (274)
T ss_pred HHHHHHHHHHhcCceeEEEecCCCCCcccHHHhhhhheee
Confidence 3344444332 23344 78999999999998776655543
No 201
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0028 Score=62.07 Aligned_cols=114 Identities=19% Similarity=0.206 Sum_probs=78.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC------------------CCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP------------------RKKPD 236 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~------------------~~KP~ 236 (320)
-+++||+.+.++.++..|++|-.+|+.+-..++.+..+.|+....++..++.+.++. +.-|.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~ 725 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPN 725 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCc
Confidence 468999999999999999999999999988888888888665544432334443321 12222
Q ss_pred HH-HHHHHHHHcCCCCCcEEEE-ecCHhhHHHHHHcCCeEEEEcCCC-CCcccccCCCeecc
Q 020874 237 PA-IYTLAASTLGVDPSSCVVV-EDSTIGLAAAKAAGMKCIVTKSSY-TAEEDFLNADAVFD 295 (320)
Q Consensus 237 ~~-~~~~~~~~~g~~~~~~v~V-GDs~~Di~~A~~aG~~~v~v~~g~-~~~~~~~~a~~vi~ 295 (320)
.. .+-+.++ ...++|.| ||+.||-.+.++|.+...| |- +.+-.++.+|.++-
T Consensus 726 DK~lLVk~L~----~~g~VVAVTGDGTNDaPALkeADVGlAM---GIaGTeVAKEaSDIIi~ 780 (1034)
T KOG0204|consen 726 DKHLLVKGLI----KQGEVVAVTGDGTNDAPALKEADVGLAM---GIAGTEVAKEASDIIIL 780 (1034)
T ss_pred hHHHHHHHHH----hcCcEEEEecCCCCCchhhhhcccchhc---cccchhhhhhhCCeEEE
Confidence 21 1222222 33567766 9999999999999988776 32 33444567888763
No 202
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.87 E-value=0.0035 Score=52.42 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
+.+.+.|+.|+++|++++++|+.....+...++.+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 55667889999999999999999998888888764
No 203
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.016 Score=51.19 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=68.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc---cccceeEEeCCCC----CCCCCCH-------------
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE---RAEKIQIFAGDVV----PRKKPDP------------- 237 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~---~~~~~~i~~~d~~----~~~KP~~------------- 237 (320)
.|....+|+.|+++|.++.++||.+...++.-.+.+-+.+ +||. .|+-++-- ...+|-.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDV-VIvqA~KP~Fftde~rPfR~~dek~~sl~wdk 320 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDV-VIVQANKPEFFTDERRPFRKYDEKRGSLLWDK 320 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhhe-eEEecCCCcccccccCcchhhcccccchhhhh
Confidence 5788999999999999999999999988887777664433 4552 23322110 0111211
Q ss_pred -------HH-----HHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEE
Q 020874 238 -------AI-----YTLAASTLGVDPSSCVVVEDST-IGLAAAK-AAGMKCIVT 277 (320)
Q Consensus 238 -------~~-----~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~-~aG~~~v~v 277 (320)
.+ +...++.-|+...+++++||.. .|+.... .+|+++-.+
T Consensus 321 v~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAI 374 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAI 374 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccc
Confidence 01 2334555678888999999999 7998877 889887654
No 204
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.03 Score=48.61 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=40.9
Q ss_pred eEEeCCCC----CCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC---CeEEEEcCC
Q 020874 223 QIFAGDVV----PRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAG---MKCIVTKSS 280 (320)
Q Consensus 223 ~i~~~d~~----~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG---~~~v~v~~g 280 (320)
.+..+..+ +.+.-|...+.+++++...+..-+++.||..+|-.+...+. -.+|-+..+
T Consensus 166 ~v~~gk~vVEvrp~~~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~ 230 (266)
T COG1877 166 RVTPGKMVVELRPPGVSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVG 230 (266)
T ss_pred EEEeCceEEEEeeCCcchHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCC
Confidence 55555433 23344788899899888777667899999999988888876 445554444
No 205
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=96.66 E-value=0.013 Score=50.53 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC---------------------------
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP--------------------------- 231 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~--------------------------- 231 (320)
|.+.+.|..|++.|..+++=|-|+.+++..-++.+++..+|+ .+++++...
T Consensus 145 ~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd--~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv~ 222 (297)
T PF05152_consen 145 PAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFD--IIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDVT 222 (297)
T ss_pred hHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccE--EEEeCCccCCcCCccceeecccceEEeccceEEeCC
Confidence 667788899999999999999999999999999999889988 666543210
Q ss_pred C--CCC-CHHHHHHHHHHcCCCC-CcEEEEecCH
Q 020874 232 R--KKP-DPAIYTLAASTLGVDP-SSCVVVEDST 261 (320)
Q Consensus 232 ~--~KP-~~~~~~~~~~~~g~~~-~~~v~VGDs~ 261 (320)
. +-| .|+.....+++.|+.. ..+..|+|=.
T Consensus 223 ~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~ 256 (297)
T PF05152_consen 223 NVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK 256 (297)
T ss_pred cCCCCCCCCeehHHHHHHcCCceeeeEEEeccCc
Confidence 0 012 3566667777777765 3445666655
No 206
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.64 E-value=0.02 Score=50.51 Aligned_cols=88 Identities=19% Similarity=0.187 Sum_probs=57.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchH---HHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~---~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
.++||+.++|+.|+++|++++++||++.. .....++.+|.....+ .++++. ......+++.+....
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~--~i~ts~---------~~~~~~l~~~~~~~~ 86 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAE--QLFSSA---------LCAARLLRQPPDAPK 86 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEecHH---------HHHHHHHHhhCcCCC
Confidence 45799999999999999999999997533 3334566665432222 444442 233444555434456
Q ss_pred cEEEEecCHhhHHHHHHcCCeEE
Q 020874 253 SCVVVEDSTIGLAAAKAAGMKCI 275 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~aG~~~v 275 (320)
+++++|+.. .....+..|+..+
T Consensus 87 ~v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 87 AVYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred EEEEEcCHH-HHHHHHHCCCEEe
Confidence 788999863 3455677888755
No 207
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.036 Score=53.48 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=35.0
Q ss_pred CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.++..|||+.||+.|.+.|.+. |++-+..+.. .--.||+.|..|..+.+.|+
T Consensus 782 krvc~IGDGGNDVsMIq~A~~G-iGI~gkEGkQ-ASLAADfSItqF~Hv~rLLl 833 (1051)
T KOG0210|consen 782 KRVCAIGDGGNDVSMIQAADVG-IGIVGKEGKQ-ASLAADFSITQFSHVSRLLL 833 (1051)
T ss_pred ceEEEEcCCCccchheeecccc-eeeecccccc-cchhccccHHHHHHHHHHhh
Confidence 6789999999999999987644 2322122211 11368998888887776553
No 208
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.25 E-value=0.056 Score=46.25 Aligned_cols=77 Identities=12% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 020874 192 GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAG 271 (320)
Q Consensus 192 G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG 271 (320)
-++++|||..+....+++++.+..|..--+...|-+ +-+|.. +++.++- -+||+|...-++.|. .+
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~vDEafFLg-----G~~K~~----vL~~~~p----hIFFDDQ~~H~~~a~-~~ 251 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVRVDEAFFLG-----GLPKGP----VLKAFRP----HIFFDDQDGHLESAS-KV 251 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHHhC-----CCchhH----HHHhhCC----CEeecCchhhhhHhh-cC
Confidence 589999998776666788887744433222233322 233343 3444443 499999999999999 88
Q ss_pred CeEEEEcCCCC
Q 020874 272 MKCIVTKSSYT 282 (320)
Q Consensus 272 ~~~v~v~~g~~ 282 (320)
++++.|.+|..
T Consensus 252 vps~hVP~gv~ 262 (264)
T PF06189_consen 252 VPSGHVPYGVA 262 (264)
T ss_pred CCEEeccCCcC
Confidence 99999987754
No 209
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.23 E-value=0.0049 Score=49.36 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=57.2
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC-cccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~-~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
+.++||+.++|+.|.+. +.+++.|.+...+++.+++.+.. ..+|. .++..+.....+. .. .+-++.+|.+.++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~--~~~~r~~~~~~~~--~~-~KdL~~l~~~~~~ 108 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFS--RRLYRDDCTFDKG--SY-IKDLSKLGRDLDN 108 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEE--EEEEGGGSEEETT--EE-E--GGGSSS-GGG
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhccccc--ccccccccccccc--cc-ccchHHHhhcccc
Confidence 56789999999999776 99999999999999999999954 35565 6666554321111 00 1456666778899
Q ss_pred EEEEecCHhhH
Q 020874 254 CVVVEDSTIGL 264 (320)
Q Consensus 254 ~v~VGDs~~Di 264 (320)
+|+|+|++.-.
T Consensus 109 vvivDD~~~~~ 119 (159)
T PF03031_consen 109 VVIVDDSPRKW 119 (159)
T ss_dssp EEEEES-GGGG
T ss_pred EEEEeCCHHHe
Confidence 99999999643
No 210
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.03 E-value=0.023 Score=51.07 Aligned_cols=99 Identities=17% Similarity=0.252 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCc--------hHHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHHHHHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSN--------EKAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAIYTLAAST 246 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~--------~~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~~~~~~~~ 246 (320)
.++|.+.+-|..|.+.|+.+++.||.. .......++..- ..+.-.+..+.... -..+||.--+++..++.
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~-anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~ 182 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIV-ANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRL 182 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHH-HhcCCceEEeeeccCCcccCcchhHHHHHHHH
Confidence 456777788899999999999999742 222333333331 11111113333332 24799999999988876
Q ss_pred cCC----CCCcEEEEecC---------------HhhHHHHHHcCCeEE
Q 020874 247 LGV----DPSSCVVVEDS---------------TIGLAAAKAAGMKCI 275 (320)
Q Consensus 247 ~g~----~~~~~v~VGDs---------------~~Di~~A~~aG~~~v 275 (320)
.+- ......||||- ..|+.-|.++|+.+.
T Consensus 183 ~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 183 ENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred hhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 642 22344577662 358999999998764
No 211
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.95 E-value=0.079 Score=49.79 Aligned_cols=88 Identities=8% Similarity=-0.125 Sum_probs=50.7
Q ss_pred HHHHHHHcCCeEEEEcCCchHHHHHHHHHh-cCcccccc------eeEEeCCCCCCCCCCHHH-HHHHHHHcCCCCCcEE
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFL-LGPERAEK------IQIFAGDVVPRKKPDPAI-YTLAASTLGVDPSSCV 255 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~-~~~~~~~~------~~i~~~d~~~~~KP~~~~-~~~~~~~~g~~~~~~v 255 (320)
.++..+..| +++++|..++.+++..++.+ |....... .+.+++-.. ++...+. ..++.+.+|- ....|
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~--G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIR--GTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEe--cCccHHHHHHHHHHHhCc-cCcee
Confidence 556667778 99999999999999999994 43322111 022222221 2222333 4445555663 34468
Q ss_pred EEecCHhhHHHHHHcCCeEEEE
Q 020874 256 VVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 256 ~VGDs~~Di~~A~~aG~~~v~v 277 (320)
-+||+..|-.-..- |+-+++
T Consensus 177 g~~~~~~~~~f~~~--ck~~~~ 196 (498)
T PLN02499 177 GLGRISASSSFLSL--CKEQIH 196 (498)
T ss_pred cccCCcccchhhhh--CceEEe
Confidence 88888755554443 444444
No 212
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.90 E-value=0.038 Score=47.17 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC----CCC----CCCCC---
Q 020874 167 MVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG----DVV----PRKKP--- 235 (320)
Q Consensus 167 ~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~----d~~----~~~KP--- 235 (320)
.+.+.+....+++|+.++++.|.++++++.|.|.+-...++.+|++.+ .+++...+++. |+- +..-|
T Consensus 81 ~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~--~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH 158 (246)
T PF05822_consen 81 EEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAG--VFHPNVKVVSNFMDFDEDGVLVGFKGPLIH 158 (246)
T ss_dssp HHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT----BTTEEEEEE-EEE-TTSBEEEE-SS---
T ss_pred HHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcC--CCCCCeEEEeeeEEECCcceEeecCCCceE
Confidence 344444557899999999999999999999999999999999999973 34455556543 110 11111
Q ss_pred ----CHHHHHHHHHHc-CC-CCCcEEEEecCHhhHHHHHHc
Q 020874 236 ----DPAIYTLAASTL-GV-DPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 236 ----~~~~~~~~~~~~-g~-~~~~~v~VGDs~~Di~~A~~a 270 (320)
....+. -...+ .+ ...+++..||+..|+.||..+
T Consensus 159 ~~NKn~~~l~-~~~~~~~~~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 159 TFNKNESALE-DSPYFKQLKKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp TT-HHHHHHT-THHHHHCTTT--EEEEEESSSGGGGTTTT-
T ss_pred EeeCCccccc-CchHHHHhccCCcEEEecCccCChHhhcCC
Confidence 111111 00111 22 346799999999999999777
No 213
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=95.68 E-value=0.075 Score=44.94 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=50.3
Q ss_pred cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 020874 214 LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 214 ~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g 280 (320)
++..+|....|+++-.+ + |...|+++.+++|-+...-++|||+...-.+|+..+++++-|...
T Consensus 197 ~L~~~f~ieNIYSa~kv--G--K~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 197 RLDTIFRIENVYSSIKV--G--KLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred ccCCccccccccchhhc--c--hHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecC
Confidence 55566665566665443 3 478999999999987788899999999999999999999988643
No 214
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.57 E-value=0.034 Score=57.41 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=26.0
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~ 204 (320)
-++-+||.+.++.|++.|+||+++|+...+
T Consensus 650 DkLQdgVPetI~~L~~AGIKIWVLTGDK~E 679 (1151)
T KOG0206|consen 650 DKLQDGVPETIAKLAQAGIKIWVLTGDKQE 679 (1151)
T ss_pred chhccCchHHHHHHHHcCCEEEEEcCcHHH
Confidence 368899999999999999999999985433
No 215
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=95.19 E-value=0.094 Score=50.29 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCc---hHHHHHHHHHh--cCcccccceeEEeCCC--------CCCCCCCH---HHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSN---EKAVTAIVSFL--LGPERAEKIQIFAGDV--------VPRKKPDP---AIYTL 242 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~---~~~~~~~l~~~--~~~~~~~~~~i~~~d~--------~~~~KP~~---~~~~~ 242 (320)
-||+++....+++||++..+|... ....+..|+.+ .+..+.+...+++.+. +-.+||+. +.+..
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D 640 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD 640 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence 688888899999999999999743 33445555554 2344555545555543 23566643 23333
Q ss_pred HHHHcCCCCCc-EEEEecCHhhHHHHHHcCCe
Q 020874 243 AASTLGVDPSS-CVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 243 ~~~~~g~~~~~-~v~VGDs~~Di~~A~~aG~~ 273 (320)
+.+.+.-+... ...||+..+|+-.=+.+|++
T Consensus 641 Ik~LF~p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 641 IKNLFPPSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHhcCCCCCceeeecCCCcccceeeeeecCC
Confidence 33444422222 34689999999999999997
No 216
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.13 E-value=0.15 Score=44.17 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCC---chHHHHHHHHHhcCcccccceeEEeCCCC-----CCCCCC-------HHHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTS---NEKAVTAIVSFLLGPERAEKIQIFAGDVV-----PRKKPD-------PAIYT 241 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~---~~~~~~~~l~~~~~~~~~~~~~i~~~d~~-----~~~KP~-------~~~~~ 241 (320)
++||+.++|+.|+++|++++++||+ +.......++.+|.....+ .++++... ...++. .+.+.
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~--~iit~~~~~~~~l~~~~~~~~v~~lg~~~l~ 95 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLE--TVFTASMATADYMNDLKLEKTVYVIGEEGLK 95 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChh--hEeeHHHHHHHHHHhcCCCCEEEEEcChhHH
Confidence 4589999999999999999999984 4666677777776554333 56655311 111111 13355
Q ss_pred HHHHHcCCC----CCcEEEEecCH----hhHHHHH---HcCCeEEEEcC
Q 020874 242 LAASTLGVD----PSSCVVVEDST----IGLAAAK---AAGMKCIVTKS 279 (320)
Q Consensus 242 ~~~~~~g~~----~~~~v~VGDs~----~Di~~A~---~aG~~~v~v~~ 279 (320)
..++.+|+. ..+.|++|... .++..|. +.|+..+..+.
T Consensus 96 ~~l~~~g~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN~ 144 (249)
T TIGR01457 96 EAIKEAGYVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTNG 144 (249)
T ss_pred HHHHHcCCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 666766743 23567776532 3443332 45888666553
No 217
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.25 Score=42.06 Aligned_cols=123 Identities=11% Similarity=0.168 Sum_probs=76.3
Q ss_pred HHHHHhh-cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHH
Q 020874 131 MTAYFNK-TGWPEKAPSDEEERKQFIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAI 209 (320)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~ 209 (320)
|.+++.+ .++....+.....++++.+... ..+.+|..++.+.|+.+++++.+.|.+-...++.+
T Consensus 107 MeeWW~kSH~Lliq~~f~k~~I~~~Va~s~---------------i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev 171 (298)
T KOG3128|consen 107 MEEWWTKSHELLIQGGFSKNAIDDIVAESN---------------IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEV 171 (298)
T ss_pred HHHHHhcccceeecCCcCHHHHHHHHHHhh---------------HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHH
Confidence 5555544 3444444555666655554432 34568999999999999999999999999999998
Q ss_pred HHHhcCcccccceeEEeC----CCCC----CCCC-------CHHHHHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 020874 210 VSFLLGPERAEKIQIFAG----DVVP----RKKP-------DPAIYTLAASTLG--VDPSSCVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 210 l~~~~~~~~~~~~~i~~~----d~~~----~~KP-------~~~~~~~~~~~~g--~~~~~~v~VGDs~~Di~~A~~a 270 (320)
+++.++...+- .+++. ++.+ ..+| .-..++...+.+. -+..++++-||+..|+.||..+
T Consensus 172 ~~q~~~~~pn~--k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 172 TRQKLVLHPNV--KFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HHHHhccCccH--HhhhhhhhhcccchhhhhhHHHHHHHccchHHHHhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 88875443321 22221 1111 1111 1112222233333 2456789999999999999765
No 218
>PRK10444 UMP phosphatase; Provisional
Probab=94.95 E-value=0.14 Score=44.25 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh---cCcccccceeEEeCCCC-----CC--CC----CCHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVV-----PR--KK----PDPAIYT 241 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~---~~~~~~~~~~i~~~d~~-----~~--~K----P~~~~~~ 241 (320)
.++||+.++++.|+++|.++.++||+.........+++ |.. . ....++++... .. .+ .-...+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~-~-~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~ 94 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD-V-PDSVFYTSAMATADFLRRQEGKKAYVIGEGALI 94 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC-C-CHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHH
Confidence 45799999999999999999999998775555555544 332 1 12255555211 00 00 0112344
Q ss_pred HHHHHcCCC----CCcEEEEecCHh-h---HHHHH---HcCCeEEEEcCC
Q 020874 242 LAASTLGVD----PSSCVVVEDSTI-G---LAAAK---AAGMKCIVTKSS 280 (320)
Q Consensus 242 ~~~~~~g~~----~~~~v~VGDs~~-D---i~~A~---~aG~~~v~v~~g 280 (320)
..++..|+. ..++|+||...+ + +..|. ..|..++..+..
T Consensus 95 ~~l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n~D 144 (248)
T PRK10444 95 HELYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPD 144 (248)
T ss_pred HHHHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 455555543 235788886552 2 23232 347777776533
No 219
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=94.12 E-value=0.38 Score=48.84 Aligned_cols=88 Identities=9% Similarity=-0.074 Sum_probs=54.7
Q ss_pred eEEeCCCC----CCCCCCHHHHHHHHHHc------CCCCCcEEEEecCH-hhHHHHHHcCCeE-----------------
Q 020874 223 QIFAGDVV----PRKKPDPAIYTLAASTL------GVDPSSCVVVEDST-IGLAAAKAAGMKC----------------- 274 (320)
Q Consensus 223 ~i~~~d~~----~~~KP~~~~~~~~~~~~------g~~~~~~v~VGDs~-~Di~~A~~aG~~~----------------- 274 (320)
.+..+..+ +.+.-|+...+.+++++ +..++=++.+||.. .|=.|.+..+-..
T Consensus 662 ~v~~Gk~vvEvrp~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~l~~~~~~~~~~~~~~~~~~~~~ 741 (797)
T PLN03063 662 DVVRGQKSVEVHAIGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTFFEPEILSKKKSSSSNYSDSDKK 741 (797)
T ss_pred EEEECCeEEEEEcCCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHhcccccccccccccccccccccc
Confidence 45555432 34556789999999876 23456688999975 4666666554211
Q ss_pred -------------EEEcCCCCCcccccCCCeeccCCCCChhhHHhhhhccccc
Q 020874 275 -------------IVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLAFCGSLL 314 (320)
Q Consensus 275 -------------v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~~~~~~ 314 (320)
+.|+-|.. ...|.+.+++..|+.+.|..+.-.....
T Consensus 742 ~~~~~~~~~~~~~~~v~VG~~----~s~A~y~l~~~~eV~~lL~~l~~~~~~~ 790 (797)
T PLN03063 742 VSSNLVDLKGENYFSCAIGQA----RTKARYVLDSSNDVVSLLHKLAVANTTM 790 (797)
T ss_pred ccccccccccCceEEEEECCC----CccCeecCCCHHHHHHHHHHHhccCccc
Confidence 22222321 2468899999999988887777544333
No 220
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=93.85 E-value=0.83 Score=47.26 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCcccccceeEEeC-----CCCCCCCCCHHHHHHHHHHcCCCCCcE-EEEecCHh-hHHHHHHcCCeEE
Q 020874 203 EKAVTAIVSFLLGPERAEKIQIFAG-----DVVPRKKPDPAIYTLAASTLGVDPSSC-VVVEDSTI-GLAAAKAAGMKCI 275 (320)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~~i~~~-----d~~~~~KP~~~~~~~~~~~~g~~~~~~-v~VGDs~~-Di~~A~~aG~~~v 275 (320)
...++..|+..++... .+++. |.++..-.+...++++..+||++.+++ |++||+.+ |.+....--.++|
T Consensus 923 v~elr~~Lr~~gLr~~----~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tv 998 (1050)
T TIGR02468 923 VKELRKLLRIQGLRCH----AVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTV 998 (1050)
T ss_pred HHHHHHHHHhCCCceE----EEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEE
Confidence 3456666666544332 23433 345666778999999999999999999 55999998 9887754444566
Q ss_pred EEcC
Q 020874 276 VTKS 279 (320)
Q Consensus 276 ~v~~ 279 (320)
.+++
T Consensus 999 i~~g 1002 (1050)
T TIGR02468 999 ILKG 1002 (1050)
T ss_pred EEec
Confidence 6664
No 221
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=93.62 E-value=0.083 Score=45.98 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchH---HHHHHHHHhcCcccccceeEEeC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEK---AVTAIVSFLLGPERAEKIQIFAG 227 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~---~~~~~l~~~~~~~~~~~~~i~~~ 227 (320)
.++||+.++|+.|+++|++++++||++.. .....++.+|..--. ..++++
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~--~~i~ts 73 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISE--DEVFTP 73 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCH--HHeEcH
Confidence 36799999999999999999999997655 355666666543222 255554
No 222
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=92.22 E-value=0.39 Score=44.05 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchH------HHHHHHHHhcCcccccceeEEeCC--------CCCCCCCCHHHHHH--
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEK------AVTAIVSFLLGPERAEKIQIFAGD--------VVPRKKPDPAIYTL-- 242 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~------~~~~~l~~~~~~~~~~~~~i~~~d--------~~~~~KP~~~~~~~-- 242 (320)
.||+.+-...-.+|++|..+|..+.- .-...+++- +..+.+...+.+.| ++-..||+ .|..
T Consensus 406 ~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQn-gykLpdgpviLspd~t~aal~relIlrkpE--~FKiay 482 (580)
T COG5083 406 NGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQN-GYKLPDGPVILSPDRTMAALYRELILRKPE--VFKIAY 482 (580)
T ss_pred cchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhc-CccCCCCCEeeccchhhhhhhhhhhhcChH--HHHHHH
Confidence 44455555556689999888865321 111222222 33344443444433 22245543 3333
Q ss_pred --HHHHcCCCCCcEE-EEecCHhhHHHHHHcCCe
Q 020874 243 --AASTLGVDPSSCV-VVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 243 --~~~~~g~~~~~~v-~VGDs~~Di~~A~~aG~~ 273 (320)
-++.+..++..-+ -||+..+|+..=.++|++
T Consensus 483 Lndl~slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 483 LNDLKSLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HHHHHHhhCcCChhhccccccchhheeeccccCC
Confidence 2344555555444 789999999999999987
No 223
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.58 E-value=1.5 Score=37.48 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=49.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHH---HHHHHHH-hcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSF-LLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~-~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
.++||+.+.|+.|+++|+++.++||+.... ....|.. ++...-.+ .++++.. ....++.++. ..
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~--~iits~~--------~~~~~l~~~~--~~ 81 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPD--QIITSGS--------VTKDLLRQRF--EG 81 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHH--HeeeHHH--------HHHHHHHHhC--CC
Confidence 457999999999999999999999875333 3344444 33322222 4544432 1222222222 22
Q ss_pred CcEEEEecCHhhHHHHHHcCCe
Q 020874 252 SSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
..++++|.. ...+.++..|+.
T Consensus 82 ~~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 82 EKVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred CEEEEECCH-HHHHHHHHcCCc
Confidence 457777753 445556666754
No 224
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.39 E-value=0.45 Score=41.67 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~ 217 (320)
+.+++.++|+.|+++|++++++|+.+...+...++.+++..
T Consensus 22 ~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 22 SYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 34778899999999999999999999999999999986543
No 225
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=91.12 E-value=5.7 Score=32.78 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEeCCCccccCCccchHHHHHHHHHH
Q 020874 78 SALLFDCDGVLVDTEKDGHRISFNDTFKE 106 (320)
Q Consensus 78 k~viFDlDGTL~d~~~~~~~~a~~~~~~~ 106 (320)
.+++||+||||....... ..-+.+.+++
T Consensus 12 ~l~lfdvdgtLt~~r~~~-~~e~~~~l~~ 39 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKV-TPEMLEFLQK 39 (252)
T ss_pred eEEEEecCCccccccccC-CHHHHHHHHH
Confidence 489999999999876642 2234444443
No 226
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=90.46 E-value=0.51 Score=45.87 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=55.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC-cccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCC-
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPS- 252 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~-~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~- 252 (320)
++++|++.++|+++.+. +.+.|+|.+.+.++..+++-+.- ..+|. ..|++.++-+..|- .......|.
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~-dRIisrde~~~~kt--------~dL~~~~p~g 269 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFG-DRIISRDESPFFKT--------LDLVLLFPCG 269 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCcccc-ceEEEecCCCcccc--------cccccCCCCC
Confidence 67899999999999987 99999999999999999998832 23444 37888887443332 222223333
Q ss_pred --cEEEEecCHh
Q 020874 253 --SCVVVEDSTI 262 (320)
Q Consensus 253 --~~v~VGDs~~ 262 (320)
-+|+|+|+.+
T Consensus 270 ~smvvIIDDr~d 281 (635)
T KOG0323|consen 270 DSMVVIIDDRSD 281 (635)
T ss_pred CccEEEEeCccc
Confidence 3777777763
No 227
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=90.35 E-value=3.3 Score=36.79 Aligned_cols=90 Identities=13% Similarity=0.034 Sum_probs=52.6
Q ss_pred CCCChhHHHHHHHHHHcC-CeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC------CCC-C-CCCCCHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG------DVV-P-RKKPDPAIYTLAAS 245 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G-~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~------d~~-~-~~KP~~~~~~~~~~ 245 (320)
..++|||..+.+.|.+.| ..+..+||.+-. .-..|+++...+.|....++-. +.. . -.--|...+.-++.
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnSPw~-~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~ 273 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNSPWQ-LFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILR 273 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCChhH-hHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHH
Confidence 467899999999999887 899999997655 4445555533332222122211 000 0 01112333444555
Q ss_pred HcCCCCCcEEEEecCH-hhHHHH
Q 020874 246 TLGVDPSSCVVVEDST-IGLAAA 267 (320)
Q Consensus 246 ~~g~~~~~~v~VGDs~-~Di~~A 267 (320)
++ .-...|.|||+- .|.+.=
T Consensus 274 ~~--p~~kfvLVGDsGE~DpeIY 294 (373)
T COG4850 274 RY--PDRKFVLVGDSGEHDPEIY 294 (373)
T ss_pred hC--CCceEEEecCCCCcCHHHH
Confidence 44 345789999998 787643
No 228
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=90.16 E-value=2.8 Score=36.85 Aligned_cols=94 Identities=12% Similarity=0.069 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh---cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL---LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~---~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
.+.||+.+.++.|++.|-.+.++||++....+...+++ |... +....|+. |.-.+..+ +++......
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-v~e~~i~s--------sa~~~a~y-lk~~~~~~k 107 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-VKEENIFS--------SAYAIADY-LKKRKPFGK 107 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-cCcccccC--------hHHHHHHH-HHHhCcCCC
Confidence 56799999999999999999999999877766666554 2221 11112222 22222222 222233345
Q ss_pred cEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 020874 253 SCVVVEDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~aG~~~v~v~~g 280 (320)
.+.++|-.. =-+..+++|+.+.+....
T Consensus 108 ~Vyvig~~g-i~~eL~~aG~~~~g~~~~ 134 (306)
T KOG2882|consen 108 KVYVIGEEG-IREELDEAGFEYFGGGPD 134 (306)
T ss_pred eEEEecchh-hhHHHHHcCceeecCCCC
Confidence 666666443 223456778777765433
No 229
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=90.11 E-value=1.7 Score=43.33 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.++-|+.++.++.|.+.+++++.+|+.+.-.+..+.++++..
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 457899999999999999999999998877777777766443
No 230
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=89.68 E-value=1.2 Score=34.43 Aligned_cols=104 Identities=14% Similarity=0.217 Sum_probs=61.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC--chHHHHHHHHHhcCcccccce----eEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAEKI----QIFAGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~--~~~~~~~~l~~~~~~~~~~~~----~i~~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
+.+.|++.+.+++|.+. +.|+++|.. .......+.+.+ .++|.++ .++|+.- +
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl--~E~FPFi~~qn~vfCgnK-n----------------- 125 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWL--KEKFPFISYQNIVFCGNK-N----------------- 125 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHH--HHHCCCCChhhEEEecCC-C-----------------
Confidence 67889999999999987 899999865 445556666554 2333321 3444431 1
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHh
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFD 306 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~ 306 (320)
+-.. =++|+|++..++-.+ |++-..-...+..+.+ -..+.++.|..+.+++
T Consensus 126 ivka-DilIDDnp~nLE~F~--G~kIlFdA~HN~nenR----F~Rv~~W~e~eq~ll~ 176 (180)
T COG4502 126 IVKA-DILIDDNPLNLENFK--GNKILFDAHHNKNENR----FVRVRDWYEAEQALLE 176 (180)
T ss_pred eEEe-eEEecCCchhhhhcc--CceEEEecccccCccc----eeeeccHHHHHHHHHH
Confidence 1111 278999999888765 4443332222222222 2345666666655554
No 231
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=89.48 E-value=1.5 Score=39.56 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHHHc----CCeEEEEcCCc---hHHHHHHH-HHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc
Q 020874 176 PLRPGVAKLIDQALEK----GVKVAVCSTSN---EKAVTAIV-SFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL 247 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~----G~~i~lvT~~~---~~~~~~~l-~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~ 247 (320)
.+.||+.++++.|+.+ |+++.++||+. .......+ +.+|..--.+ .++++. .....+++++
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~--~i~~s~---------~~~~~ll~~~ 84 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPL--QVIQSH---------SPYKSLVNKY 84 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHH--HHHhhh---------HHHHHHHHHc
Confidence 3479999999999998 99999999986 44333433 6664422111 333331 1234445554
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
+ ..+++||.+. -.+.++.+|+..+.
T Consensus 85 ~---~~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 85 E---KRILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred C---CceEEEeChH-HHHHHHHcCCcccc
Confidence 3 2578888764 56777789988664
No 232
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=89.46 E-value=4.6 Score=36.78 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHc----CCCCCcEEEEecCH-----hhHHHHHHcCCeEEEEcCC
Q 020874 236 DPAIYTLAASTL----GVDPSSCVVVEDST-----IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 236 ~~~~~~~~~~~~----g~~~~~~v~VGDs~-----~Di~~A~~aG~~~v~v~~g 280 (320)
|..+.+.+.+.+ ++.++++++|||-. ||.+ |+.+| .++||...
T Consensus 350 Ks~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-aR~a~-~t~WIasP 401 (408)
T PF06437_consen 350 KSLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-ARLAC-TTAWIASP 401 (408)
T ss_pred cHHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-hhhhc-eeeEecCH
Confidence 345666666666 89999999999976 4543 45555 67787653
No 233
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=89.10 E-value=0.94 Score=38.03 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.+.|...+.|+.|++.|++++++|+.+...+...++.++..
T Consensus 18 ~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 18 MISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC
Confidence 34588899999999999999999999999999988888654
No 234
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=88.91 E-value=1.1 Score=38.19 Aligned_cols=39 Identities=8% Similarity=-0.004 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.++..++|++|+++|++++++|+.+...+...+++++..
T Consensus 17 ~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 17 PGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 467899999999999999999999999888899888653
No 235
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=88.45 E-value=7.4 Score=33.45 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=66.9
Q ss_pred CCCChhHHHHHH---HHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLID---QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~---~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
..++|+..++++ .|-+.|+.|.-+++.+... .+.|+..|-. -. +..-+.=-.+.+-.++..++.+++...+
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~-a~rLed~Gc~-aV--MPlgsPIGSg~Gl~n~~~l~~i~e~~~v-- 190 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPML-AKHLEDIGCA-TV--MPLGSPIGSGQGLQNLLNLQIIIENAKI-- 190 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHH-HHHHHHcCCe-EE--eeccCcccCCCCCCCHHHHHHHHHcCCC--
Confidence 457787777774 5567799999999977654 4445554321 11 0111111124566788999998886654
Q ss_pred CcEEEEecCH---hhHHHHHHcCCeEEEEcCCCC
Q 020874 252 SSCVVVEDST---IGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 252 ~~~v~VGDs~---~Di~~A~~aG~~~v~v~~g~~ 282 (320)
-|+||-+. .|+..|-+.|+..|+++.+-.
T Consensus 191 --pVivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 191 --PVIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred --cEEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 37777555 799999999999999987644
No 236
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=88.28 E-value=1.2 Score=37.48 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+...++|+.|+++|++++++||.+...+...++.+++.
T Consensus 19 ~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 34779999999999999999999999999999998654
No 237
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=88.10 E-value=1.2 Score=37.61 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+.|...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 21 i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 21 LSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 4578889999999999999999999999888888888654
No 238
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=88.04 E-value=1.8 Score=37.64 Aligned_cols=40 Identities=25% Similarity=0.261 Sum_probs=35.0
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+.+...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 21 i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 21 ISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred cCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 4477789999999999999999999999999899888653
No 239
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.00 E-value=9.5 Score=32.67 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=64.2
Q ss_pred CCCChhHHHHHHHHHHc---CCeEEEEcCCchHHHHHHHHHhcCcccccce-eEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEK---GVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-QIFAGDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~---G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~-~i~~~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
-.++|+..++++..+.. |..+.-+++.+......+ ..+| ....... .-+++ +.+--+++.++.+.+..++
T Consensus 103 ~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l-~~~G-~~~vmPlg~pIGs---g~Gi~~~~~I~~I~e~~~v- 176 (248)
T cd04728 103 KTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRL-EDAG-CAAVMPLGSPIGS---GQGLLNPYNLRIIIERADV- 176 (248)
T ss_pred cccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH-HHcC-CCEeCCCCcCCCC---CCCCCCHHHHHHHHHhCCC-
Confidence 45789999999888777 999994445455444444 4443 2222100 11121 2344458899888776443
Q ss_pred CCcEEEEecC---HhhHHHHHHcCCeEEEEcCCCCC
Q 020874 251 PSSCVVVEDS---TIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 251 ~~~~v~VGDs---~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
-|++|-+ +.|+..|.+.|...|+++++-..
T Consensus 177 ---pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 177 ---PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred ---cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 3666644 47999999999999999877553
No 240
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=87.97 E-value=7.9 Score=32.89 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=58.4
Q ss_pred CCCChhHHHHH---HHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCC--CCCCCCHHHHHHHHHHcCC
Q 020874 175 LPLRPGVAKLI---DQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVV--PRKKPDPAIYTLAASTLGV 249 (320)
Q Consensus 175 ~~~~pg~~e~l---~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~--~~~KP~~~~~~~~~~~~g~ 249 (320)
..++|+..+++ +.|.+.|+.|.-+++.+.. +.+.|+..|-. - ..-.+.-+ +.+--++..++.++++.++
T Consensus 103 ~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~akrL~d~Gca-a----vMPlgsPIGSg~Gi~n~~~l~~i~~~~~v 176 (247)
T PF05690_consen 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV-LAKRLEDAGCA-A----VMPLGSPIGSGRGIQNPYNLRIIIERADV 176 (247)
T ss_dssp TT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HH-HHHHHHHTT-S-E----BEEBSSSTTT---SSTHHHHHHHHHHGSS
T ss_pred CCcCCChhHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHCCCC-E----EEecccccccCcCCCCHHHHHHHHHhcCC
Confidence 45678877776 4566789999999997765 44555555321 1 11122222 3566788999999999977
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 020874 250 DPSSCVVVEDST---IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 250 ~~~~~v~VGDs~---~Di~~A~~aG~~~v~v~~g 280 (320)
+ |+|+-+. .|...|-+.|+..|+++..
T Consensus 177 P----vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 177 P----VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp S----BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred c----EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 4 6666544 7999999999999999754
No 241
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=87.29 E-value=0.29 Score=39.00 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=13.0
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
|++|||+||||+....
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 6899999999998664
No 242
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=87.26 E-value=1.6 Score=43.54 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=67.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc----ccc------------------ceeEEeCCCCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE----RAE------------------KIQIFAGDVVPR 232 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~----~~~------------------~~~i~~~d~~~~ 232 (320)
-++...+.+.+..++..|+++..+|+........+.+..|+.. .+. +-.++.+.+.+
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~- 667 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELP- 667 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccc-
Confidence 3578889999999999999999999876666665555554211 000 00122222221
Q ss_pred CCCCHHHHHHHHHHcC------CC-------------CCcEE-EEecCHhhHHHHHHcCCeEEEEcCCCCC-cccccCCC
Q 020874 233 KKPDPAIYTLAASTLG------VD-------------PSSCV-VVEDSTIGLAAAKAAGMKCIVTKSSYTA-EEDFLNAD 291 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g------~~-------------~~~~v-~VGDs~~Di~~A~~aG~~~v~v~~g~~~-~~~~~~a~ 291 (320)
.-.++-+..+++... .+ ...+| +.||+.||-.+.+.|.+...+ |... +-.++.||
T Consensus 668 -~~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAM---GiaGSDvsKqAAD 743 (1019)
T KOG0203|consen 668 -DMSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAM---GIAGSDVSKQAAD 743 (1019)
T ss_pred -ccCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceee---ccccchHHHhhcc
Confidence 122444555554332 01 12344 559999999999999977666 4332 22335566
Q ss_pred ee
Q 020874 292 AV 293 (320)
Q Consensus 292 ~v 293 (320)
.+
T Consensus 744 mI 745 (1019)
T KOG0203|consen 744 MI 745 (1019)
T ss_pred eE
Confidence 54
No 243
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.93 E-value=1.6 Score=38.46 Aligned_cols=41 Identities=5% Similarity=0.015 Sum_probs=36.1
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~ 217 (320)
.++.+.+.|+.|+++|++++++|+.....+..+.+.++...
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 35668899999999999999999999999999999987653
No 244
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=86.72 E-value=1.6 Score=37.65 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.+.+...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 16 ~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 16 TISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD 56 (256)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 34578889999999999999999999998888888887544
No 245
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=86.62 E-value=1.6 Score=38.06 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.+.+...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 19 ~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 19 HLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 34577889999999999999999999999999999888654
No 246
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=86.25 E-value=11 Score=33.85 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=65.4
Q ss_pred CCCChhHHHHHHHHHHc---CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLIDQALEK---GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~---G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
..++|+..++++..+.. |..+.++++.+..... .+..+|-.-.-.--.-+++ +.+-.+|+.++.+.+...+
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~-~l~~~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~~v-- 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAK-RLEDAGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGATV-- 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHhcCCEEEeeccccccC---CCCCCCHHHHHHHHHcCCC--
Confidence 45778888888888777 9999555555555444 4444432100000011221 2334489999999987443
Q ss_pred CcEEEEecCH---hhHHHHHHcCCeEEEEcCCCC
Q 020874 252 SSCVVVEDST---IGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 252 ~~~v~VGDs~---~Di~~A~~aG~~~v~v~~g~~ 282 (320)
-|+||-+. .|+..|-+.|...|+++.+-.
T Consensus 251 --pVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 251 --PVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred --cEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 47887665 799999999999999987754
No 247
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=86.24 E-value=1.8 Score=36.47 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~ 215 (320)
+.+...+.|+.|++.|++++++|+.+...+...++.++.
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~ 54 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGT 54 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCC
Confidence 447778899999999999999999999988888888863
No 248
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=85.96 E-value=1.5 Score=37.51 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHcCCC---CCcEEEEecCHhhHHHHHHcCCe
Q 020874 236 DPAIYTLAASTLGVD---PSSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~---~~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
|....+.++++++.. +.-++|+||..+|-.+.+.+.-.
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~ 206 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALREL 206 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS
T ss_pred hHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhc
Confidence 566677777766654 66799999999999999987653
No 249
>PRK00208 thiG thiazole synthase; Reviewed
Probab=85.38 E-value=16 Score=31.35 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHHHc---CCeEEEEcCCchHHHHHHHHHhcCcccccce-eEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEK---GVKVAVCSTSNEKAVTAIVSFLLGPERAEKI-QIFAGDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~---G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~-~i~~~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
-.++|+..++++..+.. |..+.-+++.+..... .+..+| ....... .-++++ .+--+++.++.+.+..++
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak-~l~~~G-~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~v- 176 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RLEEAG-CAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADV- 176 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHcC-CCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCC-
Confidence 35678888888887776 9999934444444444 444443 2222110 111221 234458888888776543
Q ss_pred CCcEEEEecC---HhhHHHHHHcCCeEEEEcCCCCC
Q 020874 251 PSSCVVVEDS---TIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 251 ~~~~v~VGDs---~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
-|++|-+ +.|+..|.+.|...|+++++-..
T Consensus 177 ---pVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 177 ---PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred ---eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 3666644 47999999999999999887553
No 250
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.25 E-value=2.5 Score=43.52 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCChhHHHHHHHHHHc-CCeEEEEcCCchHHHHHHHHHh
Q 020874 175 LPLRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~-G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
..+.|++.++|+.|.+. +..|+|+|+.+...++.++...
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 45668999999999775 7899999999998888887664
No 251
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=85.22 E-value=2 Score=37.27 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+.|...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 21 i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 21 ILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 4577789999999999999999999998888888888644
No 252
>PRK10976 putative hydrolase; Provisional
Probab=85.17 E-value=2 Score=37.32 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+.+...+.|++|+++|++++++|+.+...+...++.++..
T Consensus 20 is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 20 LSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 4477889999999999999999999999888888887654
No 253
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=84.35 E-value=2.5 Score=36.58 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+...+.|+.|+++|++++++|+.+...+...++.++..
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 45789999999999999999999999999999998653
No 254
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=84.14 E-value=2.1 Score=36.29 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
.+.|...+.|+.|+++|++++++|+.+...+...++.++..
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 35688999999999999999999999999999999987544
No 255
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.44 E-value=2.7 Score=36.76 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~ 215 (320)
.+...+.|++|+++|++++++|+.+...+...++.++.
T Consensus 26 ~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 26 WQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred cHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 46677899999999999999999999999999999865
No 256
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=83.03 E-value=2.8 Score=36.35 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=36.5
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPE 217 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~ 217 (320)
+.+...+.|++++++|++++++|+.+...+...++.++...
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 35788899999999999999999999999999999997654
No 257
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=82.23 E-value=9.3 Score=29.08 Aligned_cols=87 Identities=8% Similarity=0.042 Sum_probs=53.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC-chHHHHHHHHHhcCcccccce---eEEeCCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGPERAEKI---QIFAGDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~~~~~~~~~---~i~~~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
...|+++...|..|+++|+.++++|++ ..+.+.+.|+.+....-+-.- ..++...++ ...+-..|..+-+..|..
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g-~gsklghfke~~n~s~~~ 121 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVG-DGSKLGHFKEFTNNSNSI 121 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeec-CcccchhHHHHhhccCcc
Confidence 577999999999999999999999986 455667777776443211100 000011111 111234456666666777
Q ss_pred CCcEEEEecCHh
Q 020874 251 PSSCVVVEDSTI 262 (320)
Q Consensus 251 ~~~~v~VGDs~~ 262 (320)
..+..++.|-..
T Consensus 122 ~k~~~~fdDesr 133 (144)
T KOG4549|consen 122 EKNKQVFDDESR 133 (144)
T ss_pred hhceeeeccccc
Confidence 777788887654
No 258
>PRK05406 LamB/YcsF family protein; Provisional
Probab=80.34 E-value=4.6 Score=34.62 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC--------------chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS--------------NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~--------------~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
.-+.+.++..+++|+.|+.-=+. +.+....++.+++...-+- -..+-.+..-||+...|..++
T Consensus 44 ~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a---~~~g~~l~hVKPHGALYN~~~ 120 (246)
T PRK05406 44 AVMRRTVRLAKENGVAIGAHPGYPDLEGFGRRNMDLSPEELYALVLYQIGALQAIA---RAAGGRVSHVKPHGALYNMAA 120 (246)
T ss_pred HHHHHHHHHHHHcCCeEccCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHcCCeeEEeCccHHHHHHHh
Confidence 34577888888889888874432 2333444444443222111 112234567899988877655
Q ss_pred HHc-----------CCCCCcEEEEecCHhhHHHHHHcCCeEEE---EcCCCCCcccc---cCCCeeccCCCCChhhHHhh
Q 020874 245 STL-----------GVDPSSCVVVEDSTIGLAAAKAAGMKCIV---TKSSYTAEEDF---LNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 245 ~~~-----------g~~~~~~v~VGDs~~Di~~A~~aG~~~v~---v~~g~~~~~~~---~~a~~vi~~l~el~~~l~~~ 307 (320)
+.- .++++=.++.-.+..=.+.|+..|++.+. ..+.|.++..+ ..+..++.+.+++.+-.+++
T Consensus 121 ~d~~~a~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~v~~~~~~~ 200 (246)
T PRK05406 121 KDPALADAVAEAVAAVDPSLILVGLAGSELIRAAEEAGLRTASEVFADRAYTADGTLVPRSQPGAVIHDEEEAAAQVLQM 200 (246)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHcCCcEEEEEEecCCcCCCCCCcCCCCCCCccCCHHHHHHHHHHH
Confidence 321 23565344443666788999999998765 55777777766 46888999998888888888
Q ss_pred hhcc
Q 020874 308 AFCG 311 (320)
Q Consensus 308 ~~~~ 311 (320)
+..+
T Consensus 201 ~~~g 204 (246)
T PRK05406 201 VQEG 204 (246)
T ss_pred HHcC
Confidence 7544
No 259
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=79.62 E-value=26 Score=29.76 Aligned_cols=98 Identities=14% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCCChhHHHHHH---HHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC
Q 020874 175 LPLRPGVAKLID---QALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP 251 (320)
Q Consensus 175 ~~~~pg~~e~l~---~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~ 251 (320)
-.+.|+..++++ .|-+.|+.|.-.++.+....+ .|+..|-...- ..-..--.+.+--.+..++.++++..++
T Consensus 110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~ar-rLee~GcaavM---Pl~aPIGSg~G~~n~~~l~iiie~a~VP- 184 (262)
T COG2022 110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLAR-RLEEAGCAAVM---PLGAPIGSGLGLQNPYNLEIIIEEADVP- 184 (262)
T ss_pred cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHH-HHHhcCceEec---cccccccCCcCcCCHHHHHHHHHhCCCC-
Confidence 457788877775 455779999999998775444 44444321110 1111111234556788999999988775
Q ss_pred CcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 020874 252 SSCVVVEDST---IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 252 ~~~v~VGDs~---~Di~~A~~aG~~~v~v~~g 280 (320)
|.|+-+. .|...|-+.|+..|+++..
T Consensus 185 ---viVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 185 ---VIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred ---EEEeCCCCChhHHHHHHhcccceeehhhH
Confidence 6676544 8999999999999998754
No 260
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=79.61 E-value=33 Score=29.23 Aligned_cols=83 Identities=19% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCeEEEEcCCc---hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH--hhHHH
Q 020874 192 GVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST--IGLAA 266 (320)
Q Consensus 192 G~~i~lvT~~~---~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~--~Di~~ 266 (320)
++.+-+++++. ...++...... ..++..++.|+.+-+ ..-|-|..-+.++...|++ +++|||.+ .+...
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~-~~~~~pDf~i~isPN--~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d~ 104 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKM-LEEWKPDFVIVISPN--PAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKDA 104 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHH-HHhhCCCEEEEECCC--CCCCCchHHHHHHHhcCCC---EEEEcCCCccchHHH
Confidence 78888888763 33344333333 223333335666543 3456666777888888884 89999999 57788
Q ss_pred HHHcCCeEEEEcCC
Q 020874 267 AKAAGMKCIVTKSS 280 (320)
Q Consensus 267 A~~aG~~~v~v~~g 280 (320)
.++-|+..|.+.-.
T Consensus 105 l~~~g~GYIivk~D 118 (277)
T PRK00994 105 MEEQGLGYIIVKAD 118 (277)
T ss_pred HHhcCCcEEEEecC
Confidence 99999999988643
No 261
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=78.39 E-value=3.8 Score=36.17 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=31.4
Q ss_pred cCCCCChhHHHHHHHHHHcC-CeEEEEcCCchHHHHHHH
Q 020874 173 KLLPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIV 210 (320)
Q Consensus 173 ~~~~~~pg~~e~l~~L~~~G-~~i~lvT~~~~~~~~~~l 210 (320)
+...+||..-++++.+|+.| .++.|+||+....+...|
T Consensus 89 GEPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~L 127 (296)
T COG0731 89 GEPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEEL 127 (296)
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHHh
Confidence 34789999999999999999 799999999884444433
No 262
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=78.28 E-value=29 Score=26.79 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH-HHHHHHHhcCcccccce---eEEeCCCC-----CCCCCCHHHHHHHHHHcC
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKI---QIFAGDVV-----PRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~-~~~~l~~~~~~~~~~~~---~i~~~d~~-----~~~KP~~~~~~~~~~~~g 248 (320)
...+.+++....++|-+|.++-|+.... .......++....+... .+...++. ...--++.+-+.+.+.++
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLALYD 100 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHHcC
Confidence 3556677777777888999998875533 23333333322111110 22222211 001112344566677778
Q ss_pred CCCCcEEEE----ecCHhhH---HHHHHcCCeEEEEc
Q 020874 249 VDPSSCVVV----EDSTIGL---AAAKAAGMKCIVTK 278 (320)
Q Consensus 249 ~~~~~~v~V----GDs~~Di---~~A~~aG~~~v~v~ 278 (320)
+.|.+++++ |.+++=+ +.|++.|+.+|.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 899998877 7777644 45566799999875
No 263
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=77.13 E-value=19 Score=34.90 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVED 259 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGD 259 (320)
++...|...++.+-++++++-.+.-.--..+..+...+... ..+...++ ......-++..|++ ++|||
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~-~~~~~~~e-------~~~~~~~l~~~G~~----~viG~ 152 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQ-RSYVTEED-------ARSCVNDLRARGIG----AVVGA 152 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEE-EEecCHHH-------HHHHHHHHHHCCCC----EEECC
Confidence 35666677777788999998654433333444432222111 01112222 12222334445663 88999
Q ss_pred CHhhHHHHHHcCCeEEEEcCC
Q 020874 260 STIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 260 s~~Di~~A~~aG~~~v~v~~g 280 (320)
... ...|+++|+..|++..+
T Consensus 153 ~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 153 GLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred hHH-HHHHHHcCCceEEEecH
Confidence 975 67889999999998764
No 264
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=76.06 E-value=4.3 Score=33.00 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHH-HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHH---cCCCCCcEEEE
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAAST---LGVDPSSCVVV 257 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~-~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~---~g~~~~~~v~V 257 (320)
.++|..++..+-++++++..+.-. ...+-+.++ .+... ..+ ++ ++-++..+++ -|++ ++|
T Consensus 67 l~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~-~~i~~--~~~--~~-------~~e~~~~i~~~~~~G~~----viV 130 (176)
T PF06506_consen 67 LRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG-VDIKI--YPY--DS-------EEEIEAAIKQAKAEGVD----VIV 130 (176)
T ss_dssp HHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT--EEEE--EEE--SS-------HHHHHHHHHHHHHTT------EEE
T ss_pred HHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC-CceEE--EEE--CC-------HHHHHHHHHHHHHcCCc----EEE
Confidence 344444455578999998654432 233333332 22221 222 21 2223333433 4553 889
Q ss_pred ecCHhhHHHHHHcCCeEEEEcCC
Q 020874 258 EDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 258 GDs~~Di~~A~~aG~~~v~v~~g 280 (320)
|++.. ...|++.|++++.+..|
T Consensus 131 Gg~~~-~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 131 GGGVV-CRLARKLGLPGVLIESG 152 (176)
T ss_dssp ESHHH-HHHHHHTTSEEEESS--
T ss_pred CCHHH-HHHHHHcCCcEEEEEec
Confidence 99975 78899999999998654
No 265
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=75.96 E-value=5.1 Score=33.38 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
.||+.|.++.|++++.+|-.|||...+.-..+.+++
T Consensus 25 vpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL 60 (262)
T KOG3040|consen 25 VPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL 60 (262)
T ss_pred CCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH
Confidence 499999999999999999999997655444444443
No 266
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=73.26 E-value=2.5 Score=27.76 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAK 268 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~ 268 (320)
.+.+++++|+ .|+|||...|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HHHHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence 3567888998 799999999998865
No 267
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=72.47 E-value=28 Score=28.13 Aligned_cols=75 Identities=15% Similarity=0.120 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
+.++++.+.+.|.+++++-+. +...+...+.+ ...+....++....... +++-...+++..+-...++|+||=+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~-~~~~~~~~~~l--~~~yP~l~ivg~~~g~f---~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGS-EEVLEKAAANL--RRRYPGLRIVGYHHGYF---DEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCC-HHHHHHHHHHH--HHHCCCeEEEEecCCCC---ChhhHHHHHHHHHHcCCCEEEEECC
Confidence 457777777888999999654 44455555554 22333335555444333 3444455555555555578888866
Q ss_pred H
Q 020874 261 T 261 (320)
Q Consensus 261 ~ 261 (320)
.
T Consensus 111 ~ 111 (172)
T PF03808_consen 111 A 111 (172)
T ss_pred C
Confidence 5
No 268
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=72.31 E-value=4.6 Score=34.40 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=8.0
Q ss_pred EEeCCCccccCCc
Q 020874 81 LFDCDGVLVDTEK 93 (320)
Q Consensus 81 iFDlDGTL~d~~~ 93 (320)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6999999998655
No 269
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=72.28 E-value=26 Score=34.03 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEec
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVED 259 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGD 259 (320)
++.+.|...++.+-++++++-.+.-.--..+..+...+... ..+...++ .+....-++..|++ ++|||
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~-~~~~~~~e-------~~~~v~~lk~~G~~----~vvG~ 162 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQ-RSYVTEED-------ARGQINELKANGIE----AVVGA 162 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEE-EEecCHHH-------HHHHHHHHHHCCCC----EEEcC
Confidence 35666677777788999998655433333444432222211 02222222 12222334456764 88999
Q ss_pred CHhhHHHHHHcCCeEEEEcCC
Q 020874 260 STIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 260 s~~Di~~A~~aG~~~v~v~~g 280 (320)
... ...|.++|+..+++..+
T Consensus 163 ~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 163 GLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred chH-HHHHHHhCCceEEecCH
Confidence 876 78999999999997643
No 270
>PTZ00174 phosphomannomutase; Provisional
Probab=70.82 E-value=9.3 Score=32.84 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~ 212 (320)
.+.|...++|+.++++|++++++|+.+...+...++.
T Consensus 22 ~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~ 58 (247)
T PTZ00174 22 PITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGE 58 (247)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 3457778999999999999999999988777666653
No 271
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=70.25 E-value=72 Score=27.65 Aligned_cols=109 Identities=12% Similarity=0.093 Sum_probs=58.7
Q ss_pred HHHHHHHcCCeEEEEcCCchHHH-----HHHHHHhcCcccccceeEEeCCCC------CCCCCCHHHHHHHHHHcCCCCC
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAV-----TAIVSFLLGPERAEKIQIFAGDVV------PRKKPDPAIYTLAASTLGVDPS 252 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~-----~~~l~~~~~~~~~~~~~i~~~d~~------~~~KP~~~~~~~~~~~~g~~~~ 252 (320)
+.+.|+ +|-++.++-.+..-.. .+....++.. ......++.+... ....-+++.....+...++.+.
T Consensus 42 ~~~~l~-~ggrl~~~GaGtSg~la~~da~e~~~tfg~~-~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~ 119 (257)
T cd05007 42 AAERLR-AGGRLIYVGAGTSGRLGVLDASELPPTFGTP-PERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTER 119 (257)
T ss_pred HHHHHH-cCCEEEEEcCcHHHHHHHHHHHhccccccCC-cccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCC
Confidence 334444 4667777766544321 1233333321 1111144444321 2334456667777777888888
Q ss_pred cEEEE----ecCH---hhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc
Q 020874 253 SCVVV----EDST---IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD 295 (320)
Q Consensus 253 ~~v~V----GDs~---~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~ 295 (320)
+++++ |.++ .=++.|++.|+++|.+..... ....+.+|+++.
T Consensus 120 DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~-s~L~~~aD~~I~ 168 (257)
T cd05007 120 DVVIGIAASGRTPYVLGALRYARARGALTIGIACNPG-SPLLQLADIAIA 168 (257)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCC-ChhHHhCCEEEE
Confidence 87644 4444 356778889999999874322 222234666554
No 272
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=69.78 E-value=8 Score=32.56 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
+.+.+.+|++.|++|++||++....+..+.+.+++.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 447788999999999999999999999999988776
No 273
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=69.72 E-value=12 Score=34.42 Aligned_cols=101 Identities=11% Similarity=0.084 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC---cccccceeEEeCC------------CC-------------
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG---PERAEKIQIFAGD------------VV------------- 230 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~---~~~~~~~~i~~~d------------~~------------- 230 (320)
+....+|..+++.|-++.++||..-.........+.+ ..+|+. .++.++ ++
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~-v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~ 279 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDL-VETRAAKPGFFHEGTVLREVEPQEGLLKNGDNT 279 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEE-EEEeccCCccccccceeeeeccccccccccccC
Confidence 3345589999999999999999988888877777733 234442 222210 00
Q ss_pred ----CCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHH-HHHcCCeEEEEcCC
Q 020874 231 ----PRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAA-AKAAGMKCIVTKSS 280 (320)
Q Consensus 231 ----~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~-A~~aG~~~v~v~~g 280 (320)
..+++.+-....+++.+++...++++|||+. .||.- -+.-|+.++.|...
T Consensus 280 ~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~pe 335 (424)
T KOG2469|consen 280 GPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPE 335 (424)
T ss_pred CcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEehh
Confidence 0233444566777888888888999999999 46544 45578888887543
No 274
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=68.87 E-value=3.1 Score=32.70 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.4
Q ss_pred eEEEEeCCCccccCC
Q 020874 78 SALLFDCDGVLVDTE 92 (320)
Q Consensus 78 k~viFDlDGTL~d~~ 92 (320)
+.+++|+||||+++.
T Consensus 3 ~~lvldld~tl~~~~ 17 (148)
T smart00577 3 KTLVLDLDETLVHST 17 (148)
T ss_pred cEEEEeCCCCeECCC
Confidence 579999999999975
No 275
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=68.76 E-value=14 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~ 204 (320)
..++|.+.++++.+++.|+.+.|.||+...
T Consensus 141 PlL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 141 PTLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 567899999999999999999999999653
No 276
>PLN02887 hydrolase family protein
Probab=68.30 E-value=11 Score=36.98 Aligned_cols=40 Identities=28% Similarity=0.363 Sum_probs=35.7
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~ 215 (320)
.+.+...+.|++|+++|++++++|+.+...+...++.+++
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l 364 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDL 364 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCc
Confidence 4678889999999999999999999999988888888754
No 277
>PLN02321 2-isopropylmalate synthase
Probab=66.27 E-value=1.5e+02 Score=29.62 Aligned_cols=98 Identities=14% Similarity=0.052 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcC-----CchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCH--HHHHHHHHHcCC
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCST-----SNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP--AIYTLAASTLGV 249 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~-----~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~--~~~~~~~~~~g~ 249 (320)
....+.+.++.+++.|...+.++. .+...+..+++... ....+ .+...|.++..-|.. ++++.+.+.+.-
T Consensus 208 ~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~-~aGa~--~I~L~DTvG~~~P~~v~~li~~l~~~~~~ 284 (632)
T PLN02321 208 VVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVI-KAGAT--TLNIPDTVGYTLPSEFGQLIADIKANTPG 284 (632)
T ss_pred HHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHH-HcCCC--EEEecccccCCCHHHHHHHHHHHHHhcCC
Confidence 345577888888998864333332 45566666666652 22234 677788888777642 334444443321
Q ss_pred CCCc--EEEE----ecCHhhHHHHHHcCCeEEEE
Q 020874 250 DPSS--CVVV----EDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 250 ~~~~--~v~V----GDs~~Di~~A~~aG~~~v~v 277 (320)
.+.- -++. |=...+..+|..+|+..|-.
T Consensus 285 ~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~ 318 (632)
T PLN02321 285 IENVIISTHCQNDLGLSTANTLAGAHAGARQVEV 318 (632)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 1111 2333 22335777888899986654
No 278
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=64.68 E-value=11 Score=32.29 Aligned_cols=38 Identities=3% Similarity=-0.063 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
|.+.++++.++++|+.++++|+.....+..+++.++..
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 77788999999999999999999999898888877543
No 279
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.64 E-value=67 Score=27.85 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=53.1
Q ss_pred CChhHHHHHHHHHHcCCeEE-EEcCCc-hHHHHHHHHHhcCcccccceeEEeCC-CCCC----CCCCHHHHHHHHHHcCC
Q 020874 177 LRPGVAKLIDQALEKGVKVA-VCSTSN-EKAVTAIVSFLLGPERAEKIQIFAGD-VVPR----KKPDPAIYTLAASTLGV 249 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~-lvT~~~-~~~~~~~l~~~~~~~~~~~~~i~~~d-~~~~----~KP~~~~~~~~~~~~g~ 249 (320)
+++...++++.++++|...+ +++-.. .+.+..+++.. .-|. .+++.. ..+. ..+-.+.++++.+..+.
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~---~gfi--y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~ 199 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS---QGFV--YLVSRAGVTGARNRAASALNELVKRLKAYSAK 199 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC---CCCE--EEEECCCCCCCcccCChhHHHHHHHHHhhcCC
Confidence 45778899999999998865 555443 34455555543 1122 233322 1121 11223333333333232
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 020874 250 DPSSCVVVEDST---IGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 250 ~~~~~v~VGDs~---~Di~~A~~aG~~~v~v~~ 279 (320)
-++||=+. .++..+..+|...+.+.+
T Consensus 200 ----pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 200 ----PVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred ----CEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 36676544 599999999999888754
No 280
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=64.48 E-value=4.2 Score=32.55 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.7
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
+.+++|+|+||+.+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 4799999999998754
No 281
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=63.28 E-value=23 Score=30.58 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=63.6
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCC-----CCCC-----------HHHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR-----KKPD-----------PAIY 240 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~-----~KP~-----------~~~~ 240 (320)
-.+.+.++.+.+++.|-+|.+.++...-. ..........++. .++..-++.. +-|. .+.=
T Consensus 113 ~V~d~~ea~~~~~~~~~rVflt~G~~~l~--~f~~~~~~~~~~~--Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n 188 (257)
T COG2099 113 EVADIEEAAEAAKQLGRRVFLTTGRQNLA--HFVAADAHSHVLA--RVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDN 188 (257)
T ss_pred EecCHHHHHHHHhccCCcEEEecCccchH--HHhcCcccceEEE--EEcCchHHHHHHHhcCCChhhEEEecCCcChHHH
Confidence 34677888888888877777777654322 2211111112222 3332211111 1111 1223
Q ss_pred HHHHHHcCCCCCcEEEEecCHh------hHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 241 TLAASTLGVDPSSCVVVEDSTI------GLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 241 ~~~~~~~g~~~~~~v~VGDs~~------Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
..++++++++ +|+==||-. =+++|.++|+..|+|.+. . ..-..+.++.|+.+.+.++.
T Consensus 189 ~all~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp-~------~~~~~~~~v~~~~~~l~~~~ 252 (257)
T COG2099 189 KALLEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP-I------DYPAGFGDVTDLDAALAQLR 252 (257)
T ss_pred HHHHHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC-C------cCCcccchhhHHHHHHHHHH
Confidence 4456777775 555544443 599999999999999876 1 11124466677666665543
No 282
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=63.22 E-value=16 Score=36.32 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG 215 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~ 215 (320)
.+...+.|+.|+++|++++++|+.....+...++.++.
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl 472 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGI 472 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 35567899999999999999999999999889888864
No 283
>PRK12569 hypothetical protein; Provisional
Probab=61.57 E-value=18 Score=30.98 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC--------------chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS--------------NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~--------------~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
.-+.+.++..+++|+.|+.-=+. +.+....++.+++...-+- -..+-.+..-||+...|..++
T Consensus 47 ~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~---~~~g~~l~hVKPHGALYN~~~ 123 (245)
T PRK12569 47 NIMRRTVELAKAHGVGIGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGALREFA---RAHGVRLQHVKPHGALYMHAA 123 (245)
T ss_pred HHHHHHHHHHHHcCCEeccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHcCCeeEEecCCHHHHHHHh
Confidence 34577888888899888875432 2333444455543222121 112334567899988887755
Q ss_pred HHc-----------CCCCCcEEEEecCHhhHHHHHHcCCeEEE---EcCCCCCcccc---cCCCeeccCCCCChhhHHhh
Q 020874 245 STL-----------GVDPSSCVVVEDSTIGLAAAKAAGMKCIV---TKSSYTAEEDF---LNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 245 ~~~-----------g~~~~~~v~VGDs~~Di~~A~~aG~~~v~---v~~g~~~~~~~---~~a~~vi~~l~el~~~l~~~ 307 (320)
+.- .++|.=.+++-.+..=.+.|+.+|++.+. ..+.|..+..+ ..+..+ +.++..+-.+++
T Consensus 124 ~d~~la~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAv--d~~~~~~~~~~m 201 (245)
T PRK12569 124 RDEALARLLVEALARLDPLLILYCMDGSATERAARELGQPVVREFYADRDYDDSGSIVFTRRVGAL--DPQQVAAKVLRA 201 (245)
T ss_pred cCHHHHHHHHHHHHHhCCCcEEEecCCcHHHHHHHHcCCCeEEEEEecCccCCCCCEecCCCCCCC--CHHHHHHHHHHH
Confidence 322 23665334443666778999999998765 55677777665 235555 666666666666
Q ss_pred hhcc
Q 020874 308 AFCG 311 (320)
Q Consensus 308 ~~~~ 311 (320)
+..+
T Consensus 202 ~~~g 205 (245)
T PRK12569 202 CREG 205 (245)
T ss_pred HHcC
Confidence 6443
No 284
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=61.43 E-value=1.1e+02 Score=27.84 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHc-CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 020874 179 PGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVV 257 (320)
Q Consensus 179 pg~~e~l~~L~~~-G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~V 257 (320)
..+.++|+.|.+. ++++.+.-.++...-..+.+.+ ..+ +...++.+ . ...-|..+++.. .++|
T Consensus 200 ~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l--~~~-~~v~~~~~--l-----~~~~~l~ll~~a------~~vv 263 (346)
T PF02350_consen 200 EQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKL--KKY-DNVRLIEP--L-----GYEEYLSLLKNA------DLVV 263 (346)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHH--TT--TTEEEE-----------HHHHHHHHHHE------SEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHh--ccc-CCEEEECC--C-----CHHHHHHHHhcc------eEEE
Confidence 3567777777776 6666665544444444443333 222 22223222 1 123344455543 4789
Q ss_pred ecCHhhHH-HHHHcCCeEEEEcCCCCCcccccCCCeec
Q 020874 258 EDSTIGLA-AAKAAGMKCIVTKSSYTAEEDFLNADAVF 294 (320)
Q Consensus 258 GDs~~Di~-~A~~aG~~~v~v~~g~~~~~~~~~a~~vi 294 (320)
|||. .+. .|-..|.++|-+.......+....+..++
T Consensus 264 gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl 300 (346)
T PF02350_consen 264 GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL 300 (346)
T ss_dssp ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE
T ss_pred EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE
Confidence 9999 888 99999999999855444444443344433
No 285
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=61.20 E-value=62 Score=29.03 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=26.4
Q ss_pred CCCCChhHHHHHHHHHHcCCeEEEEcCCch
Q 020874 174 LLPLRPGVAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 174 ~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
..-+.|++.++++.+++.|..+.++||+..
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 356789999999999999999999999864
No 286
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=60.65 E-value=1e+02 Score=26.65 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHHHcC-CeEEEEcCCchHHHHHHHH-HhcCcccccceeEEeCCCCCCCC----------C-CHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVS-FLLGPERAEKIQIFAGDVVPRKK----------P-DPAIYT 241 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G-~~i~lvT~~~~~~~~~~l~-~~~~~~~~~~~~i~~~d~~~~~K----------P-~~~~~~ 241 (320)
+.......++.+.|.+.+ -+|.+.|+ ... +....+ ......++- .++-..+...+- | ..+.=.
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttG-sk~-L~~f~~~~~~~~r~~~--RvLp~~~~~~g~~~~~iia~~GPfs~e~n~ 187 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTG-SKN-LPPFVPAPLPGERLFA--RVLPTPESALGFPPKNIIAMQGPFSKELNR 187 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCc-hhh-HHHHhhcccCCCEEEE--EECCCccccCCCChhhEEEEeCCCCHHHHH
Confidence 445677888888887777 45555554 433 333322 222333332 333322222111 1 223445
Q ss_pred HHHHHcCCCCCcEEEEecC---H--hhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHH
Q 020874 242 LAASTLGVDPSSCVVVEDS---T--IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERF 305 (320)
Q Consensus 242 ~~~~~~g~~~~~~v~VGDs---~--~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~ 305 (320)
.+++++|++ +++-=|| . .=+++|+++|++.|++.+.... ....++.+++|+.+.+.
T Consensus 188 al~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-----~~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 188 ALFRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP-----YGDPVVETIEELLDWLE 248 (249)
T ss_pred HHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-----CCCcccCCHHHHHHHHh
Confidence 567778875 4544333 2 4688999999999999875443 22334577777666553
No 287
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=60.35 E-value=7.4 Score=34.62 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHH-------H-cCC-CCCcEEEEecCH-hhHHHHH---------------HcCCeEEEEcCCCC
Q 020874 232 RKKPDPAIYTLAAS-------T-LGV-DPSSCVVVEDST-IGLAAAK---------------AAGMKCIVTKSSYT 282 (320)
Q Consensus 232 ~~KP~~~~~~~~~~-------~-~g~-~~~~~v~VGDs~-~Di~~A~---------------~aG~~~v~v~~g~~ 282 (320)
.+||.+-.|.++.. . .+. ++..+.||||++ .|+..|. +-||..|+|..|-.
T Consensus 269 ~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~ 344 (389)
T KOG1618|consen 269 LGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVY 344 (389)
T ss_pred cCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeee
Confidence 57887655554332 2 233 447788999999 7999996 67888999887743
No 288
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=60.04 E-value=13 Score=32.36 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHH-cCCeEEEEcCCchHHHHHHHHHh
Q 020874 176 PLRPGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~-~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
.+.+.+.+.|+.|++ .|++++++|+.+...+...++.+
T Consensus 36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPY 74 (266)
T ss_pred cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcc
Confidence 456889999999998 69999999999998887777654
No 289
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=60.02 E-value=87 Score=25.62 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHc--CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 179 PGVAKLIDQALEK--GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 179 pg~~e~l~~L~~~--G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
.-+.++++.|+++ |++|.+.|....- .+...+.+ .+... ..+..-| .+...+++++.+ .|+-+|+
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg-~~~~~~~~--~~~v~--~~~~P~D------~~~~~~rfl~~~--~P~~~i~ 101 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTG-REMARKLL--PDRVD--VQYLPLD------FPWAVRRFLDHW--RPDLLIW 101 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCH-HHHHHGG---GGG-S--EEE---S------SHHHHHHHHHHH----SEEEE
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCch-HHHHHHhC--CCCeE--EEEeCcc------CHHHHHHHHHHh--CCCEEEE
Confidence 4467888888876 8888888775443 22222222 11222 3333323 367788888876 5777888
Q ss_pred EecCH--hhHHHHHHcCCeEEEEcCC
Q 020874 257 VEDST--IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 257 VGDs~--~Di~~A~~aG~~~v~v~~g 280 (320)
++-.. |=+..+++.|++.++++..
T Consensus 102 ~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 102 VETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ES----HHHHHH-----S-EEEEEE-
T ss_pred EccccCHHHHHHHhhcCCCEEEEeee
Confidence 88776 7888999999999998743
No 290
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=59.78 E-value=6.8 Score=33.57 Aligned_cols=129 Identities=18% Similarity=0.214 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHcCCeEEEEcCC--------------chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHH
Q 020874 180 GVAKLIDQALEKGVKVAVCSTS--------------NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAAS 245 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~--------------~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~ 245 (320)
-+.+.++..+++|+.|+.-=+. +.+....++.+++...-+- -..+..+..-||+...|..+++
T Consensus 43 ~M~~tv~lA~~~gV~iGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a---~~~g~~l~hVKPHGALYn~~~~ 119 (242)
T PF03746_consen 43 TMRRTVRLAKEHGVAIGAHPSYPDREGFGRRSMDISPEELRDSVLYQIGALQAIA---AAEGVPLHHVKPHGALYNMAAK 119 (242)
T ss_dssp HHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHH---HHTT--EEEE---HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEeccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHcCCeeEEecccHHHHHHHhc
Confidence 3567788888899988885442 2233334444443211111 1112234567999988887665
Q ss_pred HcC-----------CCCCcEEEEecCHhhHHHHHHcCCeEEE---EcCCCCCcccc---cCCCeeccCCCCChhhHHhhh
Q 020874 246 TLG-----------VDPSSCVVVEDSTIGLAAAKAAGMKCIV---TKSSYTAEEDF---LNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 246 ~~g-----------~~~~~~v~VGDs~~Di~~A~~aG~~~v~---v~~g~~~~~~~---~~a~~vi~~l~el~~~l~~~~ 308 (320)
.-. ++|+=.+|+==+..=.+.|++.|++++. ..+.|..+..+ ..+..++.+.++..+-.++++
T Consensus 120 d~~lA~~i~~ai~~~~~~l~l~~~ags~~~~~A~~~Gl~~~~E~FADR~Y~~dG~Lv~R~~~gAvi~d~~~~~~q~~~~~ 199 (242)
T PF03746_consen 120 DEELARAIAEAIKAFDPDLPLYGLAGSELEKAAKELGLPVVFEAFADRAYDDDGSLVPRSQPGAVIHDPEEAAEQVLQMV 199 (242)
T ss_dssp -HHHHHHHHHHHHHH-TT-EEEEETTSHHHHHHHHCT--EEEEEETTBEB-TTSSBEETTSTTCB---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEcCCcHHHHHHHHCCCcEEEEEEEcccCcCCCCEeecCCCCCccCCHHHHHHHHHHHH
Confidence 332 2454344443444567889999998776 34556666555 468889999998888888887
Q ss_pred hcc
Q 020874 309 FCG 311 (320)
Q Consensus 309 ~~~ 311 (320)
-.+
T Consensus 200 ~~g 202 (242)
T PF03746_consen 200 KEG 202 (242)
T ss_dssp HCS
T ss_pred hCC
Confidence 644
No 291
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=59.13 E-value=2e+02 Score=28.79 Aligned_cols=119 Identities=16% Similarity=0.030 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccc-ccceeEEeC---CCC-------------CCCCCCHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPER-AEKIQIFAG---DVV-------------PRKKPDPA 238 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~-~~~~~i~~~---d~~-------------~~~KP~~~ 238 (320)
++..+..+.++.....|+.|..+|+.-.....+.-+++|..-. +..-...+. +.+ +..--.|+
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 3566778889888889999999999777666666666633221 110011111 000 01111233
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCC
Q 020874 239 IYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCI 297 (320)
Q Consensus 239 ~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l 297 (320)
.-..+.++++-...-|-|-||+.||..+.+.|.+.... ....+.....+|.|+...
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiav---a~atdaar~asdiVltep 627 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAV---ADATDAARSASDIVLTEP 627 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCcccchhhcccccceee---ccchhhhcccccEEEcCC
Confidence 33445566665666788999999999999998754333 334444445677776543
No 292
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=58.49 E-value=9.1 Score=40.15 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
..=+|++|+..|+++.|.|--. .+..+|+++.-.+.. .++--|. -..-+--+.++++||.++.-.+||=-+
T Consensus 1265 LAiLLqQLk~eghRvLIfTQMt--kmLDVLeqFLnyHgy---lY~RLDg----~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1265 LAILLQQLKSEGHRVLIFTQMT--KMLDVLEQFLNYHGY---LYVRLDG----NTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred HHHHHHHHHhcCceEEehhHHH--HHHHHHHHHHhhcce---EEEEecC----CccHHHHHHHHHHhcCCCceEEEEEec
Confidence 3557799999999999998632 355666666222222 1221121 122345577889999888777777655
Q ss_pred HhhHHHHHHcCCeEEEEc
Q 020874 261 TIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 261 ~~Di~~A~~aG~~~v~v~ 278 (320)
-..-.+-.-.|..+|.+-
T Consensus 1336 rSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred cCCccccccccCceEEEe
Confidence 555555666777766643
No 293
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=57.88 E-value=6.6 Score=31.25 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=14.6
Q ss_pred ceEEEEeCCCccccCCc
Q 020874 77 PSALLFDCDGVLVDTEK 93 (320)
Q Consensus 77 ~k~viFDlDGTL~d~~~ 93 (320)
-..+++|||.||+.+..
T Consensus 6 kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 6 KLHLVLDLDQTLIHTTK 22 (156)
T ss_pred ceEEEEeCCCCcccccc
Confidence 35899999999999775
No 294
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=57.53 E-value=1.7e+02 Score=28.76 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=61.0
Q ss_pred ChhHHHHHHHH---HHcCCeEEEEcCCch------HHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHHHHHHHHHc
Q 020874 178 RPGVAKLIDQA---LEKGVKVAVCSTSNE------KAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAIYTLAASTL 247 (320)
Q Consensus 178 ~pg~~e~l~~L---~~~G~~i~lvT~~~~------~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~~~~~~~~~ 247 (320)
++++.+..+.+ .+++-+|.|++..+. ..+...|+.+|... ..++..+. ..-.-.++..++.+.+.
T Consensus 52 l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~----~~~~IP~R~~eGYGl~~~~i~~~~~~- 126 (575)
T PRK11070 52 LSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSN----VDYLVPNRFEDGYGLSPEVVDQAHAR- 126 (575)
T ss_pred hhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCc----eEEEeCCCCcCCCCCCHHHHHHHHhc-
Confidence 34554444444 446789999997643 33445566654311 12333322 12234566788876653
Q ss_pred CCCCCcEEEEecCHhh---HHHHHHcCCeEEEEcCCCCCcccccCCCeec
Q 020874 248 GVDPSSCVVVEDSTIG---LAAAKAAGMKCIVTKSSYTAEEDFLNADAVF 294 (320)
Q Consensus 248 g~~~~~~v~VGDs~~D---i~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi 294 (320)
|. +=+|.|+-+.++ ++.|++.|+..|.+... ...+.++.++++|
T Consensus 127 ~~--~LiItvD~Gi~~~e~i~~a~~~gidvIVtDHH-~~~~~~P~a~a~i 173 (575)
T PRK11070 127 GA--QLIVTVDNGISSHAGVAHAHALGIPVLVTDHH-LPGETLPAADAII 173 (575)
T ss_pred CC--CEEEEEcCCcCCHHHHHHHHHCCCCEEEECCC-CCCCCCCCCeEEE
Confidence 33 346777766665 45559999999876533 3334445555555
No 295
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.16 E-value=65 Score=25.93 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
+.++++.+.+++.+++++-+ .+.......+.+ ...+....++...+..... .. -..+++..+....++|+||=+
T Consensus 35 ~~~ll~~~~~~~~~v~llG~-~~~~~~~~~~~l--~~~yp~l~i~g~~~g~~~~-~~--~~~i~~~I~~~~pdiv~vglG 108 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGA-KPEVLEKAAERL--RARYPGLKIVGYHHGYFGP-EE--EEEIIERINASGADILFVGLG 108 (171)
T ss_pred HHHHHHHHHHcCCeEEEECC-CHHHHHHHHHHH--HHHCCCcEEEEecCCCCCh-hh--HHHHHHHHHHcCCCEEEEECC
Confidence 45777888888999999944 444555554443 2223333455433322222 11 111444444455668888755
Q ss_pred H
Q 020874 261 T 261 (320)
Q Consensus 261 ~ 261 (320)
.
T Consensus 109 ~ 109 (171)
T cd06533 109 A 109 (171)
T ss_pred C
Confidence 4
No 296
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.06 E-value=1.2e+02 Score=28.60 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=41.3
Q ss_pred CeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe---cCHhhH
Q 020874 193 VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE---DSTIGL 264 (320)
Q Consensus 193 ~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG---Ds~~Di 264 (320)
.+|+|+|+.........++.+.-. +....+......-.+.-.+.-+..+++.++-..-++|+|+ -|..|+
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r--~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL 208 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRR--FPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDL 208 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhc--CCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHh
Confidence 589999999988888888877432 2211333222222344445556666666654324777773 344555
No 297
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=56.29 E-value=76 Score=28.74 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHHHHHHc-CC-eEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHH---HHHHHHHcCCCCCcE
Q 020874 181 VAKLIDQALEK-GV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAI---YTLAASTLGVDPSSC 254 (320)
Q Consensus 181 ~~e~l~~L~~~-G~-~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~---~~~~~~~~g~~~~~~ 254 (320)
+..+++.|++. ++ ...++|+........+++.++....+ .+..+.. ....+--... +..++++. .|+=+
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDiv 90 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDY---DLNIMSPGQTLGEITSNMLEGLEELLLEE--KPDIV 90 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCe---eeecCCCCCCHHHHHHHHHHHHHHHHHHc--CCCEE
Confidence 46778888875 33 35677887777777777766443111 2222211 1111111222 22333333 35545
Q ss_pred EEEecCHh---hHHHHHHcCCeEEEEcCCC
Q 020874 255 VVVEDSTI---GLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 255 v~VGDs~~---Di~~A~~aG~~~v~v~~g~ 281 (320)
+..||... -..+|...|++.+.+..|.
T Consensus 91 ~~~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 91 LVQGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred EEeCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 56688764 4556677899999886553
No 298
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=56.24 E-value=48 Score=29.31 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=53.3
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH-
Q 020874 192 GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKA- 269 (320)
Q Consensus 192 G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~- 269 (320)
+.+++++.-.. .......++-+..+++...+..... .+..-|.++.|..+++++|+..+.+|+|=|..+...+++.
T Consensus 31 d~~~~~~~~~~--~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~ 108 (285)
T COG2897 31 DARIILPDPDD--AEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAW 108 (285)
T ss_pred ceEEEeCCcch--HHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHH
Confidence 44555543322 2223333334444554322222221 2467789999999999999999888777666666666655
Q ss_pred -----cCCeEEEEcCC
Q 020874 270 -----AGMKCIVTKSS 280 (320)
Q Consensus 270 -----aG~~~v~v~~g 280 (320)
+|..-|.|..|
T Consensus 109 W~l~~~Gh~~V~iLdG 124 (285)
T COG2897 109 WLLRYLGHENVRILDG 124 (285)
T ss_pred HHHHHcCCCceEEecC
Confidence 69988777655
No 299
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.23 E-value=1.4e+02 Score=27.46 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC-chHHHHHHHHHhcCcccccceeEEeC--CCCC-CCCCCHHHHHHHHHHcCCCCCcE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGPERAEKIQIFAG--DVVP-RKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~~~~~~~~~~i~~~--d~~~-~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
+-+.++++.+++.++.+.+-.+. +....-..+...+ .+.+.+-.. +... ....++..+...++..+++
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaG----vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip---- 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAG----VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP---- 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCC----CCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC----
Confidence 44688889999987766553332 2222222232222 231112111 2222 2223577788888887653
Q ss_pred EEEecCH--hhHHHHHHcCCeEEEEcCCCC
Q 020874 255 VVVEDST--IGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 255 v~VGDs~--~Di~~A~~aG~~~v~v~~g~~ 282 (320)
|++||-. .+.+.+..+|+..|.+..+..
T Consensus 190 VIaG~V~t~e~A~~l~~aGAD~V~VG~G~G 219 (368)
T PRK08649 190 VIVGGCVTYTTALHLMRTGAAGVLVGIGPG 219 (368)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4446644 678888889999999875543
No 300
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.82 E-value=82 Score=29.23 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=39.1
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHcC-CCCCcEEEEecCHhhHHHHHH-------cCCeEEEEc
Q 020874 224 IFAGDVVPRKKPDPAIYTLAASTLG-VDPSSCVVVEDSTIGLAAAKA-------AGMKCIVTK 278 (320)
Q Consensus 224 i~~~d~~~~~KP~~~~~~~~~~~~g-~~~~~~v~VGDs~~Di~~A~~-------aG~~~v~v~ 278 (320)
++.-|..++.|-+...|+...+--+ +.|+++++|-|....-.+... +++..|.++
T Consensus 186 vIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 186 VIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred EEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEE
Confidence 4444566788888889988777544 689999999999876555543 356555554
No 301
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=54.73 E-value=15 Score=22.33 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
.++.+.|++.|++.+-+|...+...+..|..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 37788999999999999999998888888776
No 302
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=54.52 E-value=1.2e+02 Score=26.09 Aligned_cols=101 Identities=11% Similarity=0.101 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHHHcCC-eEEEEcCCchHHHHHHHHHhcCcccccceeEEe---CCCCCCCCCCHHHHHHHHHHcCCC
Q 020874 175 LPLRPGVAKLIDQALEKGV-KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFA---GDVVPRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~-~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~---~d~~~~~KP~~~~~~~~~~~~g~~ 250 (320)
.+....+..+++.|+..|+ +|+++|-......+...+.+. ..-|+...+.+ .++....+-+|+.+..++++...+
T Consensus 102 ~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~-~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 102 TPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFA-VRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDP 180 (239)
T ss_pred CCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH-hCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCC
Confidence 5667778888888888874 899999987766555555442 22222111111 122235566777777777776555
Q ss_pred CCcEEEEecCH-h--hHHHHHH--cCCeEEE
Q 020874 251 PSSCVVVEDST-I--GLAAAKA--AGMKCIV 276 (320)
Q Consensus 251 ~~~~v~VGDs~-~--Di~~A~~--aG~~~v~ 276 (320)
..+.|++-.+. . |+-...+ .|.+.+-
T Consensus 181 ~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 181 DADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 56777776554 3 4333332 4776654
No 303
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=54.42 E-value=45 Score=29.08 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCC-------CCCCCCCHHHHHHHHHHcCCC----
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDV-------VPRKKPDPAIYTLAASTLGVD---- 250 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~-------~~~~KP~~~~~~~~~~~~g~~---- 250 (320)
.++.+.++++|+.|.++.-.+ .+...-+..+..+++++. -+.++-....++..++.+|++
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~---------~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE~~~~~~~~~~lgi~i~~~ 111 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIE---------GLPDQVFTRDPGLVTGEGAVLARMGAPERRGEEEAIKETLESLGIPIYPR 111 (267)
T ss_pred HHHHHHHHHCCCEEEEcCccc---------CCCcceEeccceeEecccEEEeccCChhhccCHHHHHHHHHHcCCccccc
Confidence 366777888999999987211 111111111112222221 134556778899999998873
Q ss_pred ---------------CCcEEEEecCH-hhHHHHHHc
Q 020874 251 ---------------PSSCVVVEDST-IGLAAAKAA 270 (320)
Q Consensus 251 ---------------~~~~v~VGDs~-~Di~~A~~a 270 (320)
-.++|+||.+. +|++++...
T Consensus 112 ~~~~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 112 VEAGVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred ccCCCccccccEEEeCCcEEEEEeccccchHHHHHH
Confidence 16678889888 688887764
No 304
>PLN02334 ribulose-phosphate 3-epimerase
Probab=54.22 E-value=1.3e+02 Score=25.34 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC--chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCC-CCCcEE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS--NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGV-DPSSCV 255 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~--~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~-~~~~~v 255 (320)
+...+.++.+++.|.++++..|. +.......++. ++.+++-...+..+.. + .+..+..+..+.+-... ..-.++
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~-~~~Dyi~~~~v~pg~~-~-~~~~~~~~~~i~~~~~~~~~~~I~ 178 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEK-GLVDMVLVMSVEPGFG-G-QSFIPSMMDKVRALRKKYPELDIE 178 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhc-cCCCEEEEEEEecCCC-c-cccCHHHHHHHHHHHHhCCCCcEE
Confidence 44578889999999999999974 33333333322 1134432223332222 1 22334444444332222 112355
Q ss_pred EE-ecCHhhHHHHHHcCCeEEEEcCC
Q 020874 256 VV-EDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 256 ~V-GDs~~Di~~A~~aG~~~v~v~~g 280 (320)
++ |=+..++....++|+..+.+.+.
T Consensus 179 a~GGI~~e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 179 VDGGVGPSTIDKAAEAGANVIVAGSA 204 (229)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEChH
Confidence 55 45668999999999998877543
No 305
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=53.66 E-value=1.3e+02 Score=25.09 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHH-HHHHHHHhcCcccccceeEEeCCCCCCCCC--------CHHHHHHHHHHcCC
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKA-VTAIVSFLLGPERAEKIQIFAGDVVPRKKP--------DPAIYTLAASTLGV 249 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~-~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP--------~~~~~~~~~~~~g~ 249 (320)
..+.+++.+--.+|-++.+.-.+...+ .+++.-+.|+.-... .|+...-+....+ ...+-..++.++++
T Consensus 25 ~kaa~lVAesi~n~g~i~~FG~GHShm~aeEv~yRAGGLa~~~--pIL~~plMLhega~ass~lErieg~~~~~l~~~~i 102 (243)
T COG4821 25 KKAAKLVAESIMNDGRIYVFGSGHSHMLAEEVFYRAGGLAPIK--PILMEPLMLHEGAVASSYLERIEGYAKLFLHRLQI 102 (243)
T ss_pred HHHHHHHHHHHhcCCEEEEecCchHHHHHHHHHhhcCCccccc--cccCChhhhcccccccchhHhhhhHHHHHHHHhcC
Confidence 445566666666777888877666655 445555555554443 4544432111111 11233446788999
Q ss_pred CCCcEEEE----ecCHhhHHHH---HHcCCeEEEEcCCCCCcc----------cccCCCeeccCCC
Q 020874 250 DPSSCVVV----EDSTIGLAAA---KAAGMKCIVTKSSYTAEE----------DFLNADAVFDCIG 298 (320)
Q Consensus 250 ~~~~~v~V----GDs~~Di~~A---~~aG~~~v~v~~g~~~~~----------~~~~a~~vi~~l~ 298 (320)
.+.++++| |-++--+++| ++-|+..|.++.-..... ..+.+|.|+++=.
T Consensus 103 ~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~a 168 (243)
T COG4821 103 RPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGA 168 (243)
T ss_pred CCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCC
Confidence 99998776 4444455555 556988888764322211 1134777777643
No 306
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=53.19 E-value=33 Score=30.70 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCChhHHHHHHHHHHc----CCeEEEEcCCchHH----HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc
Q 020874 176 PLRPGVAKLIDQALEK----GVKVAVCSTSNEKA----VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL 247 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~----G~~i~lvT~~~~~~----~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~ 247 (320)
.+.||+.++++.|.++ .++.+++||+-.-. +.++-+.++ .-++.+++-... ..|+.+.
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lg--------v~Vs~dqviqSH---sP~r~l~--- 116 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLG--------VEVSADQVIQSH---SPFRLLV--- 116 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhC--------CccCHHHHHhhc---ChHHHHh---
Confidence 5569999999999888 78999999974322 222222222 223333332222 1233333
Q ss_pred CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 020874 248 GVDPSSCVVVEDSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 248 g~~~~~~v~VGDs~~Di~~A~~aG~~~v~ 276 (320)
...-++++++|+. +=.+-|+..|.+-|.
T Consensus 117 ~~~~k~vLv~G~~-~vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 117 EYHYKRVLVVGQG-SVREVAEGYGFKNVV 144 (389)
T ss_pred hhhhceEEEecCC-cHHHHhhccCcccee
Confidence 2245689999955 445678888888665
No 307
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=52.80 E-value=84 Score=27.69 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHcCCe---------EEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcC
Q 020874 178 RPGVAKLIDQALEKGVK---------VAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~---------i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g 248 (320)
.++..+.++.|+++ ++ |+..|.+....+..+.+. .|.+-++++.. -.+..-+..++++.|
T Consensus 170 ~ddt~~Iv~~l~~r-~p~~~~~~~~~ICyAT~nRQ~Avk~la~~------~Dl~iVVG~~n----SSNs~rL~eiA~~~g 238 (294)
T COG0761 170 VDDTAEIVAALKER-FPKIEVPPFNDICYATQNRQDAVKELAPE------VDLVIVVGSKN----SSNSNRLAEIAKRHG 238 (294)
T ss_pred HHHHHHHHHHHHHh-CccccCCcccccchhhhhHHHHHHHHhhc------CCEEEEECCCC----CccHHHHHHHHHHhC
Confidence 36677777777776 33 444444444433333332 23223333322 123344566777777
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCccc
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEED 286 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~ 286 (320)
. + .+.| |+..|+....-.|..+|++..|...++.
T Consensus 239 ~-~--aylI-d~~~ei~~~w~~~~~~VGvTAGAStPd~ 272 (294)
T COG0761 239 K-P--AYLI-DDAEEIDPEWLKGVKTVGVTAGASTPDW 272 (294)
T ss_pred C-C--eEEe-CChHhCCHHHhcCccEEEEecCCCCCHH
Confidence 7 3 3333 6778888888888899999887665543
No 308
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=52.32 E-value=37 Score=27.66 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=25.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~ 204 (320)
..+++.+.++++.+++.|+.+.+.||+...
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 456678999999999999999999999643
No 309
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=52.28 E-value=14 Score=33.59 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=17.4
Q ss_pred CCCceEEEEeCCCccccCCc
Q 020874 74 SVLPSALLFDCDGVLVDTEK 93 (320)
Q Consensus 74 ~~~~k~viFDlDGTL~d~~~ 93 (320)
+..+++|-||||.||+.-..
T Consensus 9 l~~i~~~GFDmDyTLa~Y~~ 28 (343)
T TIGR02244 9 LEKIQVFGFDMDYTLAQYKS 28 (343)
T ss_pred cccCCEEEECccccccccCh
Confidence 56799999999999998665
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=51.86 E-value=14 Score=30.56 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH--hhHHHHHH-cCCeEEEEcCCCCCcccccCCCeeccCCCCChhh
Q 020874 227 GDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST--IGLAAAKA-AGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEE 303 (320)
Q Consensus 227 ~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~--~Di~~A~~-aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~ 303 (320)
+..++.+| ...+++.++.+.-...-+|+-||=. +|-+-..+ .|.+.+.+..|..-. ..|+.+...++|+...
T Consensus 19 ~Gp~GSGK--TaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH---~da~m~~~ai~~l~~~ 93 (202)
T COG0378 19 GGPPGSGK--TALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH---LDASMNLEAIEELVLD 93 (202)
T ss_pred cCCCCcCH--HHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC---CcHHHHHHHHHHHhhc
Confidence 34455666 7888998988876666788889988 58888999 999999998885552 4566666666666554
Q ss_pred HH--hhhh
Q 020874 304 RF--DLAF 309 (320)
Q Consensus 304 l~--~~~~ 309 (320)
.. +++|
T Consensus 94 ~~~~Dll~ 101 (202)
T COG0378 94 FPDLDLLF 101 (202)
T ss_pred CCcCCEEE
Confidence 33 5554
No 311
>PRK08185 hypothetical protein; Provisional
Probab=51.62 E-value=1.1e+02 Score=27.05 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC---CCCCCHHHHHHHHHHcCCCCCcEEEE-
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP---RKKPDPAIYTLAASTLGVDPSSCVVV- 257 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~---~~KP~~~~~~~~~~~~g~~~~~~v~V- 257 (320)
.++|+..++.|+-|+-..-.+..++..+++..-- .... .|+...... .+.+-..+...++++..++ =+++.
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee-~~sP--vIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP--V~lHLD 76 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEA-NNAP--AIIAIHPNELDFLGDNFFAYVRERAKRSPVP--FVIHLD 76 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHH-hCCC--EEEEeCcchhhhccHHHHHHHHHHHHHCCCC--EEEECC
Confidence 4778888888898888887788888888877621 1122 233221111 1222333445555666553 13333
Q ss_pred -ecCHhhHHHHHHcCCeEEEEcCCCCCc
Q 020874 258 -EDSTIGLAAAKAAGMKCIVTKSSYTAE 284 (320)
Q Consensus 258 -GDs~~Di~~A~~aG~~~v~v~~g~~~~ 284 (320)
|.+..+++.|..+|+..|++.....+.
T Consensus 77 Hg~~~e~i~~ai~~Gf~SVM~D~S~l~~ 104 (283)
T PRK08185 77 HGATIEDVMRAIRCGFTSVMIDGSLLPY 104 (283)
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence 445578889999999999987554443
No 312
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=51.29 E-value=1.7e+02 Score=25.88 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCC-CCC---CHHHHHHHHHHcCCCCCcEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR-KKP---DPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~-~KP---~~~~~~~~~~~~g~~~~~~v~ 256 (320)
+.++|+..+++|+-|+-..-.+...++.+++..-- ..-. .|+....... .-+ -..+...++++..++ =+++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee-~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--ValH 78 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAE-MRSP--VILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LALH 78 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHH-hCCC--EEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 56788889999999998887888888888877621 1222 3332221111 111 122344455566653 1233
Q ss_pred E--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 257 V--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 257 V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
. |.+..++..|..+|+.+||+.....+
T Consensus 79 LDHg~~~e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 79 LDHHESLDDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred CCCCCCHHHHHHHHHcCCCEEeecCCCCC
Confidence 3 45567888999999999998755433
No 313
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=51.05 E-value=19 Score=30.57 Aligned_cols=129 Identities=20% Similarity=0.207 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC--------------chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS--------------NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAA 244 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~--------------~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~ 244 (320)
..+.+.++..+++|+.|+---+. +.+.....+=++|-..-|. -.-+..+..-||+...|..+.
T Consensus 44 ~~M~rtV~lA~e~gV~IGAHPgyPDl~gFGRr~m~~~~~e~~a~~lYQiGAL~a~~---~a~G~~~~hVKpHGALYN~~a 120 (252)
T COG1540 44 LTMRRTVRLAKENGVAIGAHPGYPDLVGFGRREMALSPEELYAQVLYQIGALQAFA---RAQGGVVQHVKPHGALYNQAA 120 (252)
T ss_pred HHHHHHHHHHHHcCCeeccCCCCccccccCccccCCCHHHHHHHHHHHHHHHHHHH---HhcCCeEEEecccHHHHHHhh
Confidence 44677788888888888774432 2333344444443322221 122344567899998888766
Q ss_pred HH-----------cCCCCCcEEEEecCHhhHHHHHHcCCeEE---EEcCCCCCcccc---cCCCeeccCCCCChhhHHhh
Q 020874 245 ST-----------LGVDPSSCVVVEDSTIGLAAAKAAGMKCI---VTKSSYTAEEDF---LNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 245 ~~-----------~g~~~~~~v~VGDs~~Di~~A~~aG~~~v---~v~~g~~~~~~~---~~a~~vi~~l~el~~~l~~~ 307 (320)
+. ..++|+=.+|.=-+..=++.|+++|.+++ +..+.|.++..+ ..+..++++-++..+-.+++
T Consensus 121 ~D~~la~av~~av~~~dp~L~l~~Lags~~~~~a~~~GL~~~~EvFADR~Y~~dG~Lv~R~~pgA~i~d~~~a~~qvl~m 200 (252)
T COG1540 121 KDRALADAVAEAVAAFDPSLILMGLAGSELLRAAKRAGLPVAEEVFADRAYQPDGTLVPRSLPGAVIHDEEEALAQVLQM 200 (252)
T ss_pred cCHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHcCchhHHHHhcccccCCCCcEecCCCCCccccCHHHHHHHHHHH
Confidence 42 24577766666566677889999999854 456777777766 46888999988888877777
Q ss_pred hhc
Q 020874 308 AFC 310 (320)
Q Consensus 308 ~~~ 310 (320)
+-.
T Consensus 201 ~~~ 203 (252)
T COG1540 201 VRE 203 (252)
T ss_pred Hhc
Confidence 744
No 314
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=50.93 E-value=1.7e+02 Score=25.56 Aligned_cols=101 Identities=13% Similarity=-0.004 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-
Q 020874 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST- 261 (320)
Q Consensus 183 e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~- 261 (320)
.+-+.|++.|..+..+++.........++..+. + .+...+... +..+.+-+...++..+. + ++|-|++
T Consensus 22 ~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~----~--v~~~~~~~~-~~~d~~~~~~~l~~~~~---d-~vV~D~y~ 90 (279)
T TIGR03590 22 TLARALHAQGAEVAFACKPLPGDLIDLLLSAGF----P--VYELPDESS-RYDDALELINLLEEEKF---D-ILIVDHYG 90 (279)
T ss_pred HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCC----e--EEEecCCCc-hhhhHHHHHHHHHhcCC---C-EEEEcCCC
Confidence 445667777888888888766655556555432 1 111222211 11133334455554432 2 4444544
Q ss_pred ---hhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCC
Q 020874 262 ---IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCI 297 (320)
Q Consensus 262 ---~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l 297 (320)
...+..+..|.+.+.+.+..... ..+|++++.-
T Consensus 91 ~~~~~~~~~k~~~~~l~~iDD~~~~~---~~~D~vin~~ 126 (279)
T TIGR03590 91 LDADWEKLIKEFGRKILVIDDLADRP---HDCDLLLDQN 126 (279)
T ss_pred CCHHHHHHHHHhCCeEEEEecCCCCC---cCCCEEEeCC
Confidence 34555666677777666432211 1566666553
No 315
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=49.42 E-value=1.7e+02 Score=25.07 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCch--HHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNE--KAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~--~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
+...++++.+++.|.+.+++-|... +.++..++.. +.+- +.+..- .+. +=.+.....+.+--...++..+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~---~~~l---~msv~~~~g~-~~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS---PLFI---YYGLRPATGV-PLPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC---CCEE---EEEeCCCCCC-CchHHHHHHHHHHHHhcCCCCE
Confidence 6778999999999999988877533 3445555442 2221 122111 111 2122222222211112222347
Q ss_pred EEecCH---hhHHHHHHcCCeEEEEcC
Q 020874 256 VVEDST---IGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 256 ~VGDs~---~Di~~A~~aG~~~v~v~~ 279 (320)
.||=+. .|+..+..+|...+.+..
T Consensus 189 ~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 189 VVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 777655 688888899999888754
No 316
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=48.99 E-value=40 Score=26.48 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCch
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
.+.+.++++.+++.|+++.+.||...
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 37788999999999999999999754
No 317
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=48.96 E-value=83 Score=27.24 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE 258 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG 258 (320)
+=+.++++...+.|.+|+++-+.+. ..++..+.+ ...+....+++..+ +.-+|..+ +.++++..-...++++||
T Consensus 95 Dl~~~Ll~~a~~~~~~vfllGgkp~-V~~~a~~~l--~~~~p~l~ivg~h~-GYf~~~e~--~~i~~~I~~s~pdil~Vg 168 (253)
T COG1922 95 DLVEALLKRAAEEGKRVFLLGGKPG-VAEQAAAKL--RAKYPGLKIVGSHD-GYFDPEEE--EAIVERIAASGPDILLVG 168 (253)
T ss_pred HHHHHHHHHhCccCceEEEecCCHH-HHHHHHHHH--HHHCCCceEEEecC-CCCChhhH--HHHHHHHHhcCCCEEEEe
Confidence 4456677777777899999865543 344444433 12222225555555 33343333 344444444555678887
Q ss_pred cCH
Q 020874 259 DST 261 (320)
Q Consensus 259 Ds~ 261 (320)
=+.
T Consensus 169 mG~ 171 (253)
T COG1922 169 MGV 171 (253)
T ss_pred CCC
Confidence 665
No 318
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=48.17 E-value=34 Score=28.76 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCCChh-HHHHHHHHHHcCCeEEEEcCCch
Q 020874 175 LPLRPG-VAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 175 ~~~~pg-~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
..+.++ +.++++.+++.|+.+++.||+..
T Consensus 49 Pllq~~fl~~l~~~~k~~gi~~~leTnG~~ 78 (213)
T PRK10076 49 VLMQAEFATRFLQRLRLWGVSCAIETAGDA 78 (213)
T ss_pred HHcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 345666 58999999999999999999843
No 319
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=47.99 E-value=92 Score=25.96 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC--CCCCCCCCCHHHH---HHHHHHcCCCCCc
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG--DVVPRKKPDPAIY---TLAASTLGVDPSS 253 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~--d~~~~~KP~~~~~---~~~~~~~g~~~~~ 253 (320)
..+.+.++.|++.|+++++--=+....-...+..+. ++.+.+-.+ .......-....+ ..+++.+|+ .
T Consensus 133 ~~~~~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~----~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~ 205 (241)
T smart00052 133 ESAVATLQRLRELGVRIALDDFGTGYSSLSYLKRLP----VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGL---Q 205 (241)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC----CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCC---e
Confidence 334589999999999999864333333334444432 221111110 0111111122333 344455554 3
Q ss_pred EEEEe-cCHhhHHHHHHcCCeEEE
Q 020874 254 CVVVE-DSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 254 ~v~VG-Ds~~Di~~A~~aG~~~v~ 276 (320)
+++=| ++..+...+++.|+..+.
T Consensus 206 via~gVe~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 206 VVAEGVETPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred EEEecCCCHHHHHHHHHcCCCEEe
Confidence 55555 777899999999998765
No 320
>PHA01735 hypothetical protein
Probab=47.52 E-value=84 Score=21.05 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 154 FIASLHKRKTELFMVLIEKKLLPLRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+..++....+.+...+..+... -.+....+++|+++++.-+.+.|.+-..
T Consensus 9 ~fs~LH~~lt~El~~RiksgeAT-taDL~AA~d~Lk~NdItgv~~~gspl~~ 59 (76)
T PHA01735 9 QFDELHQLLTNELLSRIKSGEAT-TADLRAACDWLKSNDITGVAVDGSPLAK 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHCCCceeeCCCCHHHH
Confidence 34445555555555555544333 3778899999999999888888766443
No 321
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=1.9e+02 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=35.2
Q ss_pred CcEEEEecCHhh---HHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhh
Q 020874 252 SSCVVVEDSTIG---LAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEE 303 (320)
Q Consensus 252 ~~~v~VGDs~~D---i~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~ 303 (320)
-++++|=|-..| +..|+..|++.|.+-+.+...+ ..|++|+.=+|-...
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dpd---~VD~~IP~Ndda~rs 208 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDPD---GVDYVIPGNDDAIRS 208 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCCc---cCceeecCCChHHHH
Confidence 357777777754 5667778999999877666554 578888887775443
No 322
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.08 E-value=1.1e+02 Score=28.83 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=62.0
Q ss_pred CChhHHHHHHHHHHc-CCeEEEEc-C-CchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcC-CCCC
Q 020874 177 LRPGVAKLIDQALEK-GVKVAVCS-T-SNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLG-VDPS 252 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~-G~~i~lvT-~-~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g-~~~~ 252 (320)
-+|++.+-|+.|.++ |++++-.. + .+...+...++++.. ..+| ++.-|.-++-.-+.+.+..+.+-.. +.|.
T Consensus 139 ~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~-~~~D---vvIvDTAGRl~ide~Lm~El~~Ik~~~~P~ 214 (451)
T COG0541 139 YRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKE-EGYD---VVIVDTAGRLHIDEELMDELKEIKEVINPD 214 (451)
T ss_pred CChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHH-cCCC---EEEEeCCCcccccHHHHHHHHHHHhhcCCC
Confidence 468888888888665 66665542 2 234456666666632 2333 3333555666777788877766544 5899
Q ss_pred cEEEEecCHhhHHHHHH-------cCCeEEEEc
Q 020874 253 SCVVVEDSTIGLAAAKA-------AGMKCIVTK 278 (320)
Q Consensus 253 ~~v~VGDs~~Di~~A~~-------aG~~~v~v~ 278 (320)
++++|=|+...=.+... .|+..|.++
T Consensus 215 E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 215 ETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred eEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 99999999854333322 477777765
No 323
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.83 E-value=1.6e+02 Score=23.99 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
+.++++...++|++++++-+ .+..++...+.+. .. +....++.. . +.-+|+ --..++++.+....++|+||=+
T Consensus 37 ~~~l~~~~~~~~~~vfllG~-~~~v~~~~~~~l~-~~-yP~l~i~g~-~-g~f~~~--~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 37 MEELCQRAGKEKLPIFLYGG-KPDVLQQLKVKLI-KE-YPKLKIVGA-F-GPLEPE--ERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHHcCCeEEEECC-CHHHHHHHHHHHH-HH-CCCCEEEEE-C-CCCChH--HHHHHHHHHHHcCCCEEEEEcC
Confidence 45677777778899999954 4445555555542 22 232244433 2 323332 2233455555455678888855
Q ss_pred H
Q 020874 261 T 261 (320)
Q Consensus 261 ~ 261 (320)
.
T Consensus 110 ~ 110 (177)
T TIGR00696 110 C 110 (177)
T ss_pred C
Confidence 4
No 324
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=46.80 E-value=60 Score=30.83 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=26.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~ 214 (320)
.+.+.+.+..+++.|++|+|=-=+...--...|+.+.
T Consensus 400 ~~~~~~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~ 436 (524)
T COG4943 400 PKKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLP 436 (524)
T ss_pred chhhhHHHHHHHhcCCeEEEccCcCcchhHHHHhhCC
Confidence 4667889999999999999965444443445566553
No 325
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=46.66 E-value=21 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~ 204 (320)
.-+++++.++++.+++.|+++.+.||+...
T Consensus 83 Pll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 83 PALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 345688999999999999999999999753
No 326
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.58 E-value=1.4e+02 Score=25.62 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
+.++++...++|++++++ ++.+..++...+.+. ..+ . ..++.... +.-.| +-...++++.+....++|+||=+
T Consensus 94 ~~~ll~~~~~~~~~v~ll-G~~~~v~~~a~~~l~-~~y-~-l~i~g~~~-Gyf~~--~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 94 WEALMARAGKEGTPVFLV-GGKPEVLAQTEAKLR-TQW-N-VNIVGSQD-GYFTP--EQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHHHHHhcCCeEEEE-CCCHHHHHHHHHHHH-HHh-C-CEEEEEeC-CCCCH--HHHHHHHHHHHhcCCCEEEEECC
Confidence 356677777789999999 445555666666552 223 2 24544333 33333 33345666666677789999865
Q ss_pred H-h-hHHHHH
Q 020874 261 T-I-GLAAAK 268 (320)
Q Consensus 261 ~-~-Di~~A~ 268 (320)
. . +.-+.+
T Consensus 167 ~PkQE~~~~~ 176 (243)
T PRK03692 167 SPKQEIFMRD 176 (243)
T ss_pred CcHHHHHHHH
Confidence 4 2 444444
No 327
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.20 E-value=28 Score=23.02 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 020874 240 YTLAASTLGVDPSSCVVVEDSTIGLAAAKA 269 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~ 269 (320)
.+.+++.+|+ +|++||...|+++.+.
T Consensus 7 VqQlLK~~G~----ivyfg~r~~~iemm~~ 32 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRLYDIEMMQI 32 (68)
T ss_pred HHHHHHHCCe----eeecCCHHHHHHHHHH
Confidence 3567888887 7999999999998763
No 328
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=43.79 E-value=84 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCC-cEEEEecC----H---hhHHHHHHcCCeEEEEcCC
Q 020874 232 RKKPDPAIYTLAASTLGVDPS-SCVVVEDS----T---IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~-~~v~VGDs----~---~Di~~A~~aG~~~v~v~~g 280 (320)
...|.++.|+.+++.+|++++ .+|+.+++ . .-.-+++.+|.+-|.+-.|
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildG 131 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDG 131 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCC
Confidence 346777899999999999885 55666653 1 1223455678776654433
No 329
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=43.73 E-value=22 Score=31.40 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCch-HHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCC------
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNE-KAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVD------ 250 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~-~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~------ 250 (320)
..|-.++++.|++++ +-++.||.-. ..+-...+.+.. -+..+..+...+-...-|+..++..|++
T Consensus 273 ttgp~~li~llrqr~-RpylFSnslppavV~~a~ka~dl-------lm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~h 344 (417)
T KOG1359|consen 273 TTGPKPLISLLRQRS-RPYLFSNSLPPAVVGMAAKAYDL-------LMVSSKEIQSRQANTQRFREFMEAAGFTISGASH 344 (417)
T ss_pred ccCChhHHHHHHhcC-CceeecCCCChhhhhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHhcCceecCCCC
Confidence 356678888888885 5566677543 333333333211 2333444556666777788888888864
Q ss_pred CCcEEEEecCHhhHHHHHHc---CCeEEEEcCCC
Q 020874 251 PSSCVVVEDSTIGLAAAKAA---GMKCIVTKSSY 281 (320)
Q Consensus 251 ~~~~v~VGDs~~Di~~A~~a---G~~~v~v~~g~ 281 (320)
|-.-||+||-..-.++|... |+-.+++.+..
T Consensus 345 PI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~Pv 378 (417)
T KOG1359|consen 345 PICPVMLGDARLASKMADELLKRGIYVIGFSYPV 378 (417)
T ss_pred CccceecccHHHHHHHHHHHHhcCceEEeecCCc
Confidence 44569999999888888874 77777766543
No 330
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=43.58 E-value=1e+02 Score=26.37 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=50.7
Q ss_pred CCeEEEEcCCc---hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH--hhHHH
Q 020874 192 GVKVAVCSTSN---EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST--IGLAA 266 (320)
Q Consensus 192 G~~i~lvT~~~---~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~--~Di~~ 266 (320)
++.+-+++++. ...++...... ..++..+..|+.+-+ ...|-|..-+.++...|++ +++|||.+ .+...
T Consensus 30 dI~vrv~gsGaKm~pe~~e~~~~~~-~~~~~pdf~I~isPN--~~~PGP~~ARE~l~~~~iP---~IvI~D~p~~k~kd~ 103 (276)
T PF01993_consen 30 DIDVRVVGSGAKMGPEDVEEVVTKM-LKEWDPDFVIVISPN--AAAPGPTKAREMLSAKGIP---CIVISDAPTKKAKDA 103 (276)
T ss_dssp SEEEEEEEEET--SHHHHHHHHHHH-HHHH--SEEEEE-S---TTSHHHHHHHHHHHHSSS----EEEEEEGGGGGGHHH
T ss_pred CceEEEeccCCCCCHHHHHHHHHHH-HHhhCCCEEEEECCC--CCCCCcHHHHHHHHhCCCC---EEEEcCCCchhhHHH
Confidence 67788887653 22233332222 112222225555543 4677788888888888885 89999999 47888
Q ss_pred HHHcCCeEEEEcC
Q 020874 267 AKAAGMKCIVTKS 279 (320)
Q Consensus 267 A~~aG~~~v~v~~ 279 (320)
.++-|+..|.+.-
T Consensus 104 l~~~g~GYIivk~ 116 (276)
T PF01993_consen 104 LEEEGFGYIIVKA 116 (276)
T ss_dssp HHHTT-EEEEETT
T ss_pred HHhcCCcEEEEec
Confidence 9999999998864
No 331
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=43.41 E-value=37 Score=25.34 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+.+.+.++.++++|.++..+|+.....
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 4678899999999999999999976543
No 332
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.89 E-value=30 Score=25.90 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+.+.++++.++++|.++..+|+.....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 4778999999999999999999976654
No 333
>PRK12342 hypothetical protein; Provisional
Probab=42.73 E-value=2.3e+02 Score=24.63 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=49.0
Q ss_pred HHHcCCeEEEEcCCchHHHHH-HHHHhcCcccccceeEEeCCCCCCCCCCH----HHHHHHHHHcCCCCCcEEEEecCHh
Q 020874 188 ALEKGVKVAVCSTSNEKAVTA-IVSFLLGPERAEKIQIFAGDVVPRKKPDP----AIYTLAASTLGVDPSSCVVVEDSTI 262 (320)
Q Consensus 188 L~~~G~~i~lvT~~~~~~~~~-~l~~~~~~~~~~~~~i~~~d~~~~~KP~~----~~~~~~~~~~g~~~~~~v~VGDs~~ 262 (320)
||+.|..|.++|-++...... +++.. +..-.|. .+..+|....+ -++ ..+..++++.+. +.|+.|....
T Consensus 47 Lk~~g~~Vtvls~Gp~~a~~~~l~r~a-lamGaD~-avli~d~~~~g-~D~~ata~~La~~i~~~~~---DLVl~G~~s~ 120 (254)
T PRK12342 47 LATDGDEIAALTVGGSLLQNSKVRKDV-LSRGPHS-LYLVQDAQLEH-ALPLDTAKALAAAIEKIGF---DLLLFGEGSG 120 (254)
T ss_pred HhhcCCEEEEEEeCCChHhHHHHHHHH-HHcCCCE-EEEEecCccCC-CCHHHHHHHHHHHHHHhCC---CEEEEcCCcc
Confidence 456788999999888654444 33432 1222332 44444432111 233 556666777663 5899987665
Q ss_pred hH-------HHHHHcCCeEEE
Q 020874 263 GL-------AAAKAAGMKCIV 276 (320)
Q Consensus 263 Di-------~~A~~aG~~~v~ 276 (320)
|- .-|...|++++-
T Consensus 121 D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 121 DLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred cCCCCCHHHHHHHHhCCCcEe
Confidence 54 677888998665
No 334
>PHA03050 glutaredoxin; Provisional
Probab=42.53 E-value=1.4e+02 Score=22.03 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHH---HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE 258 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG 258 (320)
.+.++.+-+. .+|.+.|-..-.+ +...|+.++.... ++ .++.- ....+.++....+.+.-|...=..||||
T Consensus 3 ~~~v~~~i~~-~~V~vys~~~CPyC~~ak~~L~~~~i~~~-~~-~~i~i---~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 3 EEFVQQRLAN-NKVTIFVKFTCPFCRNALDILNKFSFKRG-AY-EIVDI---KEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred HHHHHHHhcc-CCEEEEECCCChHHHHHHHHHHHcCCCcC-Cc-EEEEC---CCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 3556666554 4566666544333 4455555543211 10 22222 2234456666666666676555678888
Q ss_pred cCH----hhHHHHHHcC
Q 020874 259 DST----IGLAAAKAAG 271 (320)
Q Consensus 259 Ds~----~Di~~A~~aG 271 (320)
+.. .|+.++.+.|
T Consensus 77 g~~iGG~ddl~~l~~~g 93 (108)
T PHA03050 77 KTSIGGYSDLLEIDNMD 93 (108)
T ss_pred CEEEeChHHHHHHHHcC
Confidence 754 6788777766
No 335
>PRK08005 epimerase; Validated
Probab=41.67 E-value=2.1e+02 Score=24.00 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCch--HHHHHHHHHhcCcccccceeEEeCCC-CCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNE--KAVTAIVSFLLGPERAEKIQIFAGDV-VPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~--~~~~~~l~~~~~~~~~~~~~i~~~d~-~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
+...++|+.+|+.|.+.+++=|... ......+.. .|..-+.+-+- .+-.|=-+..+.++.+.-..-++.-+
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~------vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I 166 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQ------LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAEC 166 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHh------cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCE
Confidence 4567899999999999999887543 333333332 33222332221 12233345566665543333222237
Q ss_pred EEecCH--hhHHHHHHcCCeEEEEc
Q 020874 256 VVEDST--IGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 256 ~VGDs~--~Di~~A~~aG~~~v~v~ 278 (320)
-|+-+. ..+....++|...+.+.
T Consensus 167 ~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 167 WADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEC
Confidence 776666 47778889999977654
No 336
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.65 E-value=46 Score=22.58 Aligned_cols=43 Identities=28% Similarity=0.516 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGM 272 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~ 272 (320)
++..-|-...++.+++++++.+.....|-+..-++..++.+|-
T Consensus 22 VpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 22 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred ccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccc
Confidence 3445678889999999999999888888877788888998884
No 337
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=41.38 E-value=2e+02 Score=24.73 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCC---HHHHHHHHHHcCCCCCcE
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPD---PAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~---~~~~~~~~~~~g~~~~~~ 254 (320)
.+.+.++++.|++.|+++++=-=+....--..|+.+.. ++..-..-+..+ +.....+ -+.+-.+++.+|+. +
T Consensus 135 ~~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~-d~iKID~~fi~~-i~~~~~~~~iv~~iv~la~~l~~~---v 209 (256)
T COG2200 135 LDTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPP-DILKIDRSFVRD-LETDARDQAIVRAIVALAHKLGLT---V 209 (256)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCC-CeEEECHHHHhh-cccCcchHHHHHHHHHHHHHCCCE---E
Confidence 34688899999999999999765555555566666522 111100111222 1222222 23344455666763 5
Q ss_pred EEEe-cCHhhHHHHHHcCCeEEE
Q 020874 255 VVVE-DSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 255 v~VG-Ds~~Di~~A~~aG~~~v~ 276 (320)
|.=| .+...++..+..|+..+-
T Consensus 210 vaEGVEt~~ql~~L~~~G~~~~Q 232 (256)
T COG2200 210 VAEGVETEEQLDLLRELGCDYLQ 232 (256)
T ss_pred EEeecCCHHHHHHHHHcCCCeEe
Confidence 5556 566899999999998776
No 338
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=40.97 E-value=2.7e+02 Score=25.11 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHHcC--CeEEEEcCCchHHHHHHHHHhcCcccccceeE-Ee-------CCCCCCCCCCHHHHHHHHHHcC
Q 020874 179 PGVAKLIDQALEKG--VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQI-FA-------GDVVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 179 pg~~e~l~~L~~~G--~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i-~~-------~d~~~~~KP~~~~~~~~~~~~g 248 (320)
+.+.++++++++.+ +++.+-+-.+.+.+...++ .| .+.. .+ .. ....+.+.|.-..+..+.+...
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~-aG-aD~I---~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID-AG-ADGV---KVGIGPGSICTTRIVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh-cC-CCEE---EECCCCCcCcccceeCCCCCCHHHHHHHHHHHHh
Confidence 56788999999876 5555433344454544443 32 2221 11 01 1112345566555555544332
Q ss_pred CCCCcEEEEecC----HhhHHHHHHcCCeEEEEc
Q 020874 249 VDPSSCVVVEDS----TIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 249 ~~~~~~v~VGDs----~~Di~~A~~aG~~~v~v~ 278 (320)
-. .+=+|.|+ ..|+..|..+|...|++.
T Consensus 195 ~~--~vpVIA~GGI~~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 195 DY--GVPVIADGGIRTSGDIVKALAAGADAVMLG 226 (325)
T ss_pred hc--CCcEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 11 12233433 379999999999999984
No 339
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=40.51 E-value=1.6e+02 Score=28.70 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE--ec
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVV--ED 259 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~V--GD 259 (320)
..+.+.|+++|+++.++.++.+ ..+.. +..+ . .++.+|-.. ...+++.|++..+.+++ +|
T Consensus 430 ~~la~~L~~~g~~vvvId~d~~-~~~~~-~~~g----~---~~i~GD~~~---------~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETSRT-RVDEL-RERG----I---RAVLGNAAN---------EEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred HHHHHHHHHCCCCEEEEECCHH-HHHHH-HHCC----C---eEEEcCCCC---------HHHHHhcCccccCEEEEEcCC
Confidence 6788899999999999876544 33333 3322 1 455565421 34567788887776554 56
Q ss_pred CHhh--H-HHHHHc-CCeEEEEcCCCCCccc---ccCCCeeccCCCCChhhHHhhhhcc
Q 020874 260 STIG--L-AAAKAA-GMKCIVTKSSYTAEED---FLNADAVFDCIGDPPEERFDLAFCG 311 (320)
Q Consensus 260 s~~D--i-~~A~~a-G~~~v~v~~g~~~~~~---~~~a~~vi~~l~el~~~l~~~~~~~ 311 (320)
...+ + .++++. +-..+.+.-.+..... ..++|+++..-.++.+.+.+++...
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP 550 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcCC
Confidence 5533 2 333332 3334443322222211 2469999987777777777776543
No 340
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=40.46 E-value=2.6e+02 Score=24.71 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC---C--CCCCHHHHHHHHHHcCCCCCcEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP---R--KKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~---~--~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
..++|+..+++|+-|.-.--.+.++++.+++... ...-+ .|+...... . .+--..+...+++.++++- ++
T Consensus 6 ~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~-e~~sP--vIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV--~l 80 (286)
T COG0191 6 MKELLDKAKENGYAVPAFNINNLETLQAILEAAE-EEKSP--VIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPV--AL 80 (286)
T ss_pred HHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHH-HhCCC--EEEEecccHHHHhchHHHHHHHHHHHHHHCCCCE--EE
Confidence 4789999999999998887777888888888762 22222 333222211 1 1222355666777888642 33
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
+- |++..++..|.++|..++|+.....
T Consensus 81 HlDHg~~~~~~~~ai~~GFsSvMiDgS~~ 109 (286)
T COG0191 81 HLDHGASFEDCKQAIRAGFSSVMIDGSHL 109 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCceEEecCCcC
Confidence 43 6778999999999999999875443
No 341
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=40.19 E-value=74 Score=26.85 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCc
Q 020874 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGP 216 (320)
Q Consensus 183 e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~ 216 (320)
++++ ++++|++++++|+.+...+..+++.+++.
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 5556 57889999999999999999999988553
No 342
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=40.17 E-value=92 Score=25.95 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC---CCCC---CCCCHHHHHHHHHHcCCCCCc
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD---VVPR---KKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d---~~~~---~KP~~~~~~~~~~~~g~~~~~ 253 (320)
.+.+.++.|++.|+++++---+........+..+. ++.+.+ ... .... ...--..+...++.+|+ .
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~----~d~iKl-d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~ 204 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRLP----VDYLKI-DRSFVRDIETDPEDRAIVRAIIALAHSLGL---K 204 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC----CCEEEE-CHHHHHhHhcChhhHHHHHHHHHHHHHCCC---e
Confidence 47899999999999999954233332233344431 221111 111 1111 11112333444455554 4
Q ss_pred EEEEe-cCHhhHHHHHHcCCeEEE
Q 020874 254 CVVVE-DSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 254 ~v~VG-Ds~~Di~~A~~aG~~~v~ 276 (320)
+++=| ++..+...++..|+..+.
T Consensus 205 via~gVe~~~~~~~~~~~gi~~~Q 228 (240)
T cd01948 205 VVAEGVETEEQLELLRELGCDYVQ 228 (240)
T ss_pred EEEEecCCHHHHHHHHHcCCCeee
Confidence 66667 888999999999998765
No 343
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=39.69 E-value=15 Score=33.89 Aligned_cols=21 Identities=19% Similarity=-0.009 Sum_probs=17.8
Q ss_pred CCCCceEEEEeCCCccccCCc
Q 020874 73 ASVLPSALLFDCDGVLVDTEK 93 (320)
Q Consensus 73 ~~~~~k~viFDlDGTL~d~~~ 93 (320)
.+..+.+|.||||+||.....
T Consensus 23 ~l~~i~~~GfdmDyTL~~Y~~ 43 (424)
T KOG2469|consen 23 NLENIGIVGFDMDYTLARYNL 43 (424)
T ss_pred hhhcCcEEeeccccchhhhcc
Confidence 367899999999999997654
No 344
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.82 E-value=1e+02 Score=26.78 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=42.7
Q ss_pred EEeCCCCCCCC---CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCeEEEEcCCCCCc
Q 020874 224 IFAGDVVPRKK---PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA---GMKCIVTKSSYTAE 284 (320)
Q Consensus 224 i~~~d~~~~~K---P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a---G~~~v~v~~g~~~~ 284 (320)
|..++++..++ .+...+...+..+|++-.+...|||...++..+-+. ....|.+++|-++.
T Consensus 7 I~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT 73 (255)
T COG1058 7 IAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPT 73 (255)
T ss_pred EEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCC
Confidence 34455554333 356667777778899999999999999877665543 26788888876653
No 345
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=38.68 E-value=2.8e+02 Score=24.46 Aligned_cols=96 Identities=19% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCC---CHHHHHHHHHHcCCCCCcEEEE
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKP---DPAIYTLAASTLGVDPSSCVVV 257 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP---~~~~~~~~~~~~g~~~~~~v~V 257 (320)
.++|+..+++|+-|+...-.+...++.+++..--.. .. .|+.-.... ...+ -..+...+++...++ =+++.
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~-sP--vIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP--V~lHL 76 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAILEAAEETR-SP--VILQISEGAIKYAGLELLVAMVKAAAERASVP--VALHL 76 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhC-CC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 467888888888888887777778888777762111 22 333222111 1112 122334444555443 12333
Q ss_pred --ecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 258 --EDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 258 --GDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
|.+..++..|.++|+..||+.....
T Consensus 77 DH~~~~~~i~~ai~~GftSVMiD~S~l 103 (276)
T cd00947 77 DHGSSFELIKRAIRAGFSSVMIDGSHL 103 (276)
T ss_pred CCCCCHHHHHHHHHhCCCEEEeCCCCC
Confidence 3345688888889999999875443
No 346
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=38.35 E-value=1.9e+02 Score=27.93 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCCCcEEEEecCHhhHHHHHHc---CCeEEEEc
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAA---GMKCIVTK 278 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~a---G~~~v~v~ 278 (320)
...-++++||=++..+.+|..+ |.+++.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 3456899999999999998874 77877764
No 347
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=38.30 E-value=2.2e+02 Score=23.19 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHcCCeEEE--EcCCchHHHHHHHHHhcCcccccceeEEeCCCCCC--CCCCHHHHHHHHHHcCCCCCcEE
Q 020874 180 GVAKLIDQALEKGVKVAV--CSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPR--KKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~l--vT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~--~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
...++++.++++|.++++ ++-.+.......+. . +.++. .+.-+..... .....+.++.+.+..+ -.++
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~-~~d~v---~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~i~ 162 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L-GVDIV---ILHRGIDAQAAGGWWPEDDLKKVKKLLG---VKVA 162 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C-CCCEE---EEcCcccccccCCCCCHHHHHHHHhhcC---CCEE
Confidence 367889999999999987 45544444433222 2 22221 2211111111 2334555655554322 2344
Q ss_pred EE-ecCHhhHHHHHHcCCeEEEEcCC
Q 020874 256 VV-EDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 256 ~V-GDs~~Di~~A~~aG~~~v~v~~g 280 (320)
.. |=+..++..+.++|...+.+.+.
T Consensus 163 ~~GGI~~~~i~~~~~~Gad~vvvGsa 188 (202)
T cd04726 163 VAGGITPDTLPEFKKAGADIVIVGRA 188 (202)
T ss_pred EECCcCHHHHHHHHhcCCCEEEEeeh
Confidence 44 45568999999999998887654
No 348
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=38.16 E-value=3.4e+02 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHcCCCC-CcEEEEecCH-hhHHHHHH----cCCeEEEEcC
Q 020874 245 STLGVDP-SSCVVVEDST-IGLAAAKA----AGMKCIVTKS 279 (320)
Q Consensus 245 ~~~g~~~-~~~v~VGDs~-~Di~~A~~----aG~~~v~v~~ 279 (320)
.+.+.+. +-+|.||-+. .|+..+.+ .|+++|.|..
T Consensus 263 ~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 263 GNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred HhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4455544 3456788866 79988887 5999999876
No 349
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.89 E-value=47 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+.+.+.++.++++|.++..+|+.....
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSP 87 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCc
Confidence 4778899999999999999999876653
No 350
>PLN02591 tryptophan synthase
Probab=37.84 E-value=2.7e+02 Score=24.09 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=53.9
Q ss_pred CChhHHHHHHHHHHcCCeEEEEc-CCc-hHHHHHHHHHhcCcccccceeEEeC-CCCCCCCCCHHHHHHHHHHcCCCCCc
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCS-TSN-EKAVTAIVSFLLGPERAEKIQIFAG-DVVPRKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT-~~~-~~~~~~~l~~~~~~~~~~~~~i~~~-d~~~~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
+++...++.+.++++|+....+- -.. .+.+..+.+.- ..+. .+++. ...+.....+..+...+++..-..+-
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFI---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~ 190 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFV---YLVSSTGVTGARASVSGRVESLLQELKEVTDK 190 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcE---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCC
Confidence 35778899999999997655544 433 34455555542 2222 33332 22222112123333333332212333
Q ss_pred EEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 020874 254 CVVVEDST---IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 254 ~v~VGDs~---~Di~~A~~aG~~~v~v~~g 280 (320)
-++||=+. .|++.+...|...+.|...
T Consensus 191 Pv~vGFGI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 191 PVAVGFGISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred ceEEeCCCCCHHHHHHHHhcCCCEEEECHH
Confidence 46666444 5999999999999888643
No 351
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=37.78 E-value=1.3e+02 Score=28.38 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=42.1
Q ss_pred CeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEe---cCHhhHHH
Q 020874 193 VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP-SSCVVVE---DSTIGLAA 266 (320)
Q Consensus 193 ~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~-~~~v~VG---Ds~~Di~~ 266 (320)
.+|+|+|+.+......+++.+.-..... .+......-.+.-.+.-+..+++.++... -++|+|+ -|..|+-+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~--~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~ 205 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSL--KVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWS 205 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCc--eEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhh
Confidence 5899999999888888888874322211 23322222234444555666666666433 3778774 33345543
No 352
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=37.65 E-value=1.9e+02 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=23.2
Q ss_pred CcEEEEecCHhhHHHHHHc---CCeEEEEcC
Q 020874 252 SSCVVVEDSTIGLAAAKAA---GMKCIVTKS 279 (320)
Q Consensus 252 ~~~v~VGDs~~Di~~A~~a---G~~~v~v~~ 279 (320)
-++++||=++..+.+|..+ |.+++.+..
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 4799999999999998874 888887753
No 353
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=37.62 E-value=2.4e+02 Score=23.50 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHcC-CeEEEEcCCchHHHHHHHHHhcCcccccc-eeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 020874 180 GVAKLIDQALEKG-VKVAVCSTSNEKAVTAIVSFLLGPERAEK-IQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVV 257 (320)
Q Consensus 180 g~~e~l~~L~~~G-~~i~lvT~~~~~~~~~~l~~~~~~~~~~~-~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~V 257 (320)
...++++.+++.| ..+.+ .-.+....... ...| .++... ..-.+........+..+.++.+.+..++ .++..
T Consensus 110 ~~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a-~~~G-~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~i---pvia~ 183 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMA-DISTLEEALNA-AKLG-FDIIGTTLSGYTEETAKTEDPDFELLKELRKALGI---PVIAE 183 (219)
T ss_pred CHHHHHHHHHHHhCCeEEE-ECCCHHHHHHH-HHcC-CCEEEccCccccccccCCCCCCHHHHHHHHHhcCC---CEEEe
Confidence 6788899999888 55444 33333434333 2332 222210 0000111112234556777777776653 35555
Q ss_pred ec--CHhhHHHHHHcCCeEEEEcCC
Q 020874 258 ED--STIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 258 GD--s~~Di~~A~~aG~~~v~v~~g 280 (320)
|. +..|+..+.++|...|++...
T Consensus 184 GGI~~~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 184 GRINSPEQAAKALELGADAVVVGSA 208 (219)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEchH
Confidence 54 357999999999999998654
No 354
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=37.53 E-value=30 Score=32.73 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=13.9
Q ss_pred CCCceEEEEeCCCccccCCc
Q 020874 74 SVLPSALLFDCDGVLVDTEK 93 (320)
Q Consensus 74 ~~~~k~viFDlDGTL~d~~~ 93 (320)
+..+++|-||+|-||+....
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 57799999999999997655
No 355
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=37.49 E-value=1.9e+02 Score=25.62 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~ 202 (320)
.||+..+-+.|+..|.++.++|+..
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~ 86 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDER 86 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHH
Confidence 4899999999999999999999753
No 356
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=37.35 E-value=2.4e+02 Score=26.58 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=42.4
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC-CcEEEEec
Q 020874 192 GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP-SSCVVVED 259 (320)
Q Consensus 192 G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~-~~~v~VGD 259 (320)
--+|+|+|+.....+..++..+ ...+....++.-...-.+.-.+.-+-.+++.++-.. -++++||-
T Consensus 135 p~~IGVITS~tgAairDIl~~~--~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaR 201 (440)
T COG1570 135 PKKIGVITSPTGAALRDILHTL--SRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVAR 201 (440)
T ss_pred CCeEEEEcCCchHHHHHHHHHH--HhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEec
Confidence 3589999999999888888886 333332344433333345555666666777776544 57888853
No 357
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=37.00 E-value=2.8e+02 Score=24.14 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=48.7
Q ss_pred CCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 020874 192 GVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAG 271 (320)
Q Consensus 192 G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG 271 (320)
-+.|+|+|.++.+.-..+++...-..+.-...+++++.- +.- .++.++++ +|..-+..|++.|..+|
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~ItR~~ft~G~~------~~~---Yl~af~v~----LFLSan~~DV~~Ai~~G 102 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDITRAAFTGGES------PYP---YLKAFNVD----LFLSANEDDVQEAIDAG 102 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCcceeeeecCCCC------HHH---HHHHhCCc----eEeeCCHHHHHHHHHcC
Confidence 578999998887765555554421122222245555431 222 35556775 88888999999999999
Q ss_pred CeEEEEcCC
Q 020874 272 MKCIVTKSS 280 (320)
Q Consensus 272 ~~~v~v~~g 280 (320)
+....+...
T Consensus 103 ~~Aa~v~~~ 111 (264)
T PF06189_consen 103 IPAATVLPS 111 (264)
T ss_pred CCcEEeecC
Confidence 997776433
No 358
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=36.87 E-value=3.1e+02 Score=24.49 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC-CCCCC--CCCCHHHHHHHHHHcCCCCCcEEEEe
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG-DVVPR--KKPDPAIYTLAASTLGVDPSSCVVVE 258 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~-d~~~~--~KP~~~~~~~~~~~~g~~~~~~v~VG 258 (320)
.++++.+|+.|+++..... +.+..... ...| .|. -++.+ +..+. ..+.-..+..+.+..+++ ++.-|
T Consensus 99 ~~~i~~lk~~g~~v~~~v~-s~~~a~~a-~~~G----aD~-Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaG 168 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVVA-SVALAKRM-EKAG----ADA-VIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAG 168 (307)
T ss_pred HHHHHHHHHcCCEEEEEcC-CHHHHHHH-HHcC----CCE-EEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEEC
Confidence 3588999999988765333 33334333 3333 231 12222 21111 224566677777766543 66667
Q ss_pred cCH--hhHHHHHHcCCeEEEEcCC
Q 020874 259 DST--IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 259 Ds~--~Di~~A~~aG~~~v~v~~g 280 (320)
+=. .|+..+...|...|++.+.
T Consensus 169 GI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 169 GIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred CCCCHHHHHHHHHcCCCEeecchH
Confidence 544 6899999999999998643
No 359
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=36.66 E-value=2.6e+02 Score=29.91 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhH-HHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhhh---cc
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGL-AAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLAF---CG 311 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di-~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~---~~ 311 (320)
+...++..++++|++.-+...+.+ ..|+ ..+...|.++|. +...... ..--.++++.+|+.+.+.+.+- ..
T Consensus 128 DK~~~k~~l~~~Gipvp~~~~v~s-~~e~~~~~~~ig~PvVV-KP~~g~g---g~Gv~iv~~~eeL~~a~~~~~~~s~~~ 202 (1066)
T PRK05294 128 DRELFKEAMKKIGLPVPRSGIAHS-MEEALEVAEEIGYPVII-RPSFTLG---GTGGGIAYNEEELEEIVERGLDLSPVT 202 (1066)
T ss_pred CHHHHHHHHHHCCcCCCCeeeeCC-HHHHHHHHHHcCCCeEE-EcCCCCC---CCCeEEECCHHHHHHHHHHHHhhCCCC
Confidence 345567788899998777777754 4444 556778887665 3221111 1123467888887776554331 23
Q ss_pred cccccccC
Q 020874 312 SLLQKQYV 319 (320)
Q Consensus 312 ~~~~~~~~ 319 (320)
+.+-++||
T Consensus 203 ~vlvEe~I 210 (1066)
T PRK05294 203 EVLIEESL 210 (1066)
T ss_pred eEEEEEcc
Confidence 45555554
No 360
>PRK02947 hypothetical protein; Provisional
Probab=36.56 E-value=2.7e+02 Score=23.83 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=50.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH-hcCcccccce----eEEeCCCC--CCCCCCHHHHHHHHHHcCCC
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF-LLGPERAEKI----QIFAGDVV--PRKKPDPAIYTLAASTLGVD 250 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~-~~~~~~~~~~----~i~~~d~~--~~~KP~~~~~~~~~~~~g~~ 250 (320)
+..+.+++..+-.++-+|.++-++....+-..+.. ++....+..+ .....+.. ...--........++...+.
T Consensus 26 i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (246)
T PRK02947 26 IEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYDIR 105 (246)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcCCC
Confidence 35566666665566788999887765544332221 1110000000 00000000 00000112223345556788
Q ss_pred CCcEEEE----ecCH---hhHHHHHHcCCeEEEEcCCC
Q 020874 251 PSSCVVV----EDST---IGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 251 ~~~~v~V----GDs~---~Di~~A~~aG~~~v~v~~g~ 281 (320)
+++++++ |-+. .=++.|++.|+++|.+....
T Consensus 106 ~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 106 PGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 8877655 3333 23557778899999998654
No 361
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=36.48 E-value=79 Score=28.97 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEE
Q 020874 200 TSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVV 257 (320)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~V 257 (320)
|+.-++.+..+..+ .+++|...|+.+...-.++|+|-.|....+++..-.+.++++
T Consensus 88 ~~ElDlLeiRl~eL--~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~ 143 (356)
T PF04724_consen 88 NNELDLLEIRLNEL--YDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYV 143 (356)
T ss_pred CChHHHHHHHHHHh--hCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEE
Confidence 45677788888886 456665577777766678888888877666665444566654
No 362
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.29 E-value=1.5e+02 Score=22.97 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCC--CCcEEEEecCH
Q 020874 237 PAIYTLAASTLGVD--PSSCVVVEDST 261 (320)
Q Consensus 237 ~~~~~~~~~~~g~~--~~~~v~VGDs~ 261 (320)
++.+..+++++|++ -.++++||-+.
T Consensus 12 ~~a~~~ll~~~~~~~~gk~v~VvGrs~ 38 (140)
T cd05212 12 AKAVKELLNKEGVRLDGKKVLVVGRSG 38 (140)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 34444445555432 24555555555
No 363
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.12 E-value=63 Score=24.06 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=23.6
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~ 206 (320)
.....+.++.++++|.+++++|+......
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 46678899999999999999998766543
No 364
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=35.76 E-value=1.2e+02 Score=27.72 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
..-.||+.-+|..+.. .+.|+++|+...-.+..+++.+.-..+..+ .++.+......-++ .+-+..+|-++.++
T Consensus 213 f~kRPgvD~FL~~~a~-~yEIVi~sse~gmt~~pl~d~lDP~g~IsY-kLfr~~t~y~~G~H----vKdls~LNRdl~kV 286 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLAK-YYEIVVYSSEQGMTVFPLLDALDPKGYISY-KLFRGATKYEEGHH----VKDLSKLNRDLQKV 286 (393)
T ss_pred eccCchHHHHHHhhcc-cceEEEEecCCccchhhhHhhcCCcceEEE-EEecCcccccCccc----hhhhhhhcccccee
Confidence 4568999999999985 599999998777667777887643333322 34443322211111 22366788899999
Q ss_pred EEEecCH
Q 020874 255 VVVEDST 261 (320)
Q Consensus 255 v~VGDs~ 261 (320)
|+|+=..
T Consensus 287 ivVd~d~ 293 (393)
T KOG2832|consen 287 IVVDFDA 293 (393)
T ss_pred EEEEccc
Confidence 9997443
No 365
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=35.70 E-value=77 Score=29.12 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~ 202 (320)
..+.|++.++++.+++.|+.+.+.||+.
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 5668999999999999999999999985
No 366
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=35.57 E-value=2.9e+02 Score=25.57 Aligned_cols=94 Identities=10% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHHcC--CeEEEEcCCch--HHHHHHHHHhcCcc-cccceeEEeCCCCCCCCCCHHH-------HHHHHHHcCC
Q 020874 182 AKLIDQALEKG--VKVAVCSTSNE--KAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPAI-------YTLAASTLGV 249 (320)
Q Consensus 182 ~e~l~~L~~~G--~~i~lvT~~~~--~~~~~~l~~~~~~~-~~~~~~i~~~d~~~~~KP~~~~-------~~~~~~~~g~ 249 (320)
..+++++.+.+ -.+.++|+-.. .+....++.++... .++. +....+..-.+. +..+++ ..
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L------~i~~~~~tl~~~t~~~i~~~~~vl~--~~ 91 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDL------NIMKPGQTLGEITGNIIEGLSKVLE--EE 91 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcch------hccccCCCHHHHHHHHHHHHHHHHH--hh
Confidence 46778887774 35677888777 88888888886552 2211 111122222333 223333 34
Q ss_pred CCCcEEEEecCHhhHHHH---HHcCCeEEEEcCCCCC
Q 020874 250 DPSSCVVVEDSTIGLAAA---KAAGMKCIVTKSSYTA 283 (320)
Q Consensus 250 ~~~~~v~VGDs~~Di~~A---~~aG~~~v~v~~g~~~ 283 (320)
.|+-+++-||+..=+.+| ....++...+-.|...
T Consensus 92 kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt 128 (383)
T COG0381 92 KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRT 128 (383)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccccc
Confidence 677677779999766644 4457777777666443
No 367
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=35.45 E-value=87 Score=27.18 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHcCCCCCcEEEE---ecC---HhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhh
Q 020874 241 TLAASTLGVDPSSCVVV---EDS---TIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDL 307 (320)
Q Consensus 241 ~~~~~~~g~~~~~~v~V---GDs---~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~ 307 (320)
..+++++|++ +++- |++ ..=+++|++.|++.|+|.+... .....++.+++|+.+.+.++
T Consensus 190 ~al~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 190 KALLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQT-----IPGVAIFDDISQLNQFVARL 254 (256)
T ss_pred HHHHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC-----CCCCccCCCHHHHHHHHHHh
Confidence 4455666664 4444 332 3567888888888888876532 22345667888887777654
No 368
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=35.40 E-value=1.8e+02 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~ 202 (320)
.+.+.+.++.++++|.+++.+|+..
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678899999999999999999754
No 369
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=35.05 E-value=3.2e+02 Score=24.19 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCC-CCHH----HHHHHHHHcCCCCCcE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKK-PDPA----IYTLAASTLGVDPSSC 254 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~K-P~~~----~~~~~~~~~g~~~~~~ 254 (320)
.+.++|+..+++|+-|+...-.+...++.+++..--. ... .|+........- ...+ +...++++.+..-.=+
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~-~sP--vIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~ 81 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEE-KSP--VIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVA 81 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHH-CCC--EEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEE
Confidence 4678899999999999988777788888888776211 122 333322211111 1133 3333444442211112
Q ss_pred EEE--ecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 255 VVV--EDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 255 v~V--GDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
++. |.+..++..|.++|+.+||+.....
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVMiDgS~l 111 (288)
T TIGR00167 82 LHLDHGASEEDCAQAVKAGFSSVMIDGSHE 111 (288)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 333 3344788888899999999875543
No 370
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=35.00 E-value=3.6e+02 Score=24.67 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCHHHHHHHHH---HcCCCCCc-EEEEecCH-hhHHHHHH----cCCeEEEEcCC
Q 020874 235 PDPAIYTLAAS---TLGVDPSS-CVVVEDST-IGLAAAKA----AGMKCIVTKSS 280 (320)
Q Consensus 235 P~~~~~~~~~~---~~g~~~~~-~v~VGDs~-~Di~~A~~----aG~~~v~v~~g 280 (320)
|.-+.+..+++ +.|++..+ +|.||.+. .|+..+.+ .|++.|.|...
T Consensus 65 k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 65 KTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecCc
Confidence 34444444444 44665444 56798877 79987655 38899988763
No 371
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.97 E-value=2e+02 Score=21.47 Aligned_cols=85 Identities=12% Similarity=-0.025 Sum_probs=41.3
Q ss_pred HHHHHHcCCeEEEEcCC-chHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe-cCH-
Q 020874 185 IDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE-DST- 261 (320)
Q Consensus 185 l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG-Ds~- 261 (320)
-..|+..|+.+..+-.. +.+.......+. -.+ .++.+.......+.-.-+...+++.+.. .-.+++| ..+
T Consensus 20 ~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~----~~d--~V~iS~~~~~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~~~ 92 (122)
T cd02071 20 ARALRDAGFEVIYTGLRQTPEEIVEAAIQE----DVD--VIGLSSLSGGHMTLFPEVIELLRELGAG-DILVVGGGIIPP 92 (122)
T ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHHc----CCC--EEEEcccchhhHHHHHHHHHHHHhcCCC-CCEEEEECCCCH
Confidence 34567788887776532 323232333322 122 2322222233333333333444444443 3345665 333
Q ss_pred hhHHHHHHcCCeEEE
Q 020874 262 IGLAAAKAAGMKCIV 276 (320)
Q Consensus 262 ~Di~~A~~aG~~~v~ 276 (320)
.+++.++++|+..+.
T Consensus 93 ~~~~~~~~~G~d~~~ 107 (122)
T cd02071 93 EDYELLKEMGVAEIF 107 (122)
T ss_pred HHHHHHHHCCCCEEE
Confidence 457778889987665
No 372
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.86 E-value=3.4e+02 Score=24.03 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCCC---HHHHHHHHHHcCCCCCcEE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKPD---PAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP~---~~~~~~~~~~~g~~~~~~v 255 (320)
-+.++|+..++.|+-|+...-.+...++.+++..-- .... .|+...... ..-+. ..+...++++..++ =++
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee-~~sP--vIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP--Val 79 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAE-LRSP--VILAGTPGTFSYAGTDYIVAIAEVAARKYNIP--LAL 79 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHH-hCCC--EEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 367889999999999999888888888888887621 1222 333222111 11111 12344556666663 123
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
+. |.+..++..|.++|+.+||+.....
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVMiDgS~l 108 (284)
T PRK12737 80 HLDHHEDLDDIKKKVRAGIRSVMIDGSHL 108 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEecCCCC
Confidence 33 3345688889999999999875443
No 373
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=33.59 E-value=56 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVT 207 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~ 207 (320)
.+.+.++++.++++|.++..+|+.....+.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 467889999999999999999997765443
No 374
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.58 E-value=3.4e+02 Score=24.03 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCC---CHHHHHHHHHHcCCCCCcEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKP---DPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP---~~~~~~~~~~~~g~~~~~~v~ 256 (320)
..++|+..++.|+-|+...-.+...++.+++..--. .-. .|+...... ..-+ -..+...++++.+++- +++
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~-~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPV--alH 80 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEM-RSP--VILAGTPGTFKHIALEEIYALCSAYSTTYNMPL--ALH 80 (286)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHH-CCC--EEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCE--EEE
Confidence 568888889999999888877888888888776211 122 333222111 1111 1233444556666531 233
Q ss_pred E--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 257 V--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 257 V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
. |.+...+..|..+|+.+||+.....+
T Consensus 81 LDHg~~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 81 LDHHESLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CCCCCCHHHHHHHHHcCCCeEeecCCCCC
Confidence 3 34557888888899999998754433
No 375
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=33.47 E-value=2.6e+02 Score=25.74 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEc-----------------CCchHHHHHHHHHhcCccccc--ceeEEeCCCCCCCCCC
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCS-----------------TSNEKAVTAIVSFLLGPERAE--KIQIFAGDVVPRKKPD 236 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT-----------------~~~~~~~~~~l~~~~~~~~~~--~~~i~~~d~~~~~KP~ 236 (320)
.+-|-..-+|+.|++.|.+++.+- .++.+.++..++.+.-.+.-. ...++..|...-.+-+
T Consensus 221 a~~P~~~tvl~~L~e~g~~vi~IGKI~DI~~~~Git~~~~~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~yGHRrD 300 (397)
T COG1015 221 AVKPFAPTVLDKLKEAGRPVIAIGKIADIYAGQGITEKVKAVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSLYGHRRD 300 (397)
T ss_pred ccCCChhhHHHHHHHcCCceEEEeeHHhhhccccccccccCCCcHHHHHHHHHHHhcCCCCcEEEEeeeecccccccccc
Confidence 344555788999999998877643 345667778887774322211 1123334434445668
Q ss_pred HHHHHHHHHHcC---------CCCCcEEEE-ecCHhh
Q 020874 237 PAIYTLAASTLG---------VDPSSCVVV-EDSTIG 263 (320)
Q Consensus 237 ~~~~~~~~~~~g---------~~~~~~v~V-GDs~~D 263 (320)
+..|..+++.+. +.++++++| -|.-||
T Consensus 301 v~gYa~aLe~FD~rL~e~~~~l~edDlLiiTADHGnD 337 (397)
T COG1015 301 VAGYAAALEEFDRRLPELIENLREDDLLIITADHGND 337 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 889999888774 466777766 455555
No 376
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=33.45 E-value=2.3e+02 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-----CCeEEEEcCCCC
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA-----GMKCIVTKSSYT 282 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a-----G~~~v~v~~g~~ 282 (320)
-...++...++++|.+......|.|...++..+.+. +...|....|-.
T Consensus 20 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s 72 (152)
T cd00886 20 RSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTG 72 (152)
T ss_pred chHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 345678888999999888888999999888776442 567676665533
No 377
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=33.27 E-value=1.9e+02 Score=25.17 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccccc
Q 020874 185 IDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (320)
Q Consensus 185 l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~ 220 (320)
-+.++++|+.+.+++.+.....+..++.+ .....|
T Consensus 24 e~~a~~~Gy~l~l~~t~~~~~~e~~i~~l-~~~~vD 58 (279)
T PF00532_consen 24 EQEAREHGYQLLLCNTGDDEEKEEYIELL-LQRRVD 58 (279)
T ss_dssp HHHHHHTTCEEEEEEETTTHHHHHHHHHH-HHTTSS
T ss_pred HHHHHHcCCEEEEecCCCchHHHHHHHHH-HhcCCC
Confidence 35567889999887655444445777766 444566
No 378
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=32.93 E-value=55 Score=27.92 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=24.2
Q ss_pred CCCChhH-HHHHHHHHHcCCeEEEEcCCch
Q 020874 175 LPLRPGV-AKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 175 ~~~~pg~-~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
..+.++. .++++.+++.|+++.+.||+..
T Consensus 81 Pll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 81 AILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred HhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4456774 6999999999999999999874
No 379
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.83 E-value=78 Score=29.57 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEE-cCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVC-STSN 202 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lv-T~~~ 202 (320)
.-.+|.+.++++.+++.|+++++. ||+.
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 556899999999999999999995 9864
No 380
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=32.66 E-value=1.8e+02 Score=26.54 Aligned_cols=61 Identities=30% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHcC--CeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecC
Q 020874 183 KLIDQALEKG--VKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 183 e~l~~L~~~G--~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs 260 (320)
++-++|++.| +.++++|+.+...++.-.+- .+-+..+++++ +|+.+++|.|+
T Consensus 55 kiydeL~~~GedveVA~VsG~~~~~v~ad~~I------------------------~~qld~vl~~~--~~~~~i~VsDG 108 (344)
T PF04123_consen 55 KIYDELKAEGEDVEVAVVSGSPDVGVEADRKI------------------------AEQLDEVLSKF--DPDSAIVVSDG 108 (344)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCchhhHHHH------------------------HHHHHHHHHhC--CCCEEEEEecC
Confidence 4456677665 77888887655322111110 11223445544 56689999999
Q ss_pred HhhHHHHHH
Q 020874 261 TIGLAAAKA 269 (320)
Q Consensus 261 ~~Di~~A~~ 269 (320)
..|-....-
T Consensus 109 aeDE~vlPi 117 (344)
T PF04123_consen 109 AEDERVLPI 117 (344)
T ss_pred hhhhhhhHh
Confidence 988766544
No 381
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=32.57 E-value=3.9e+02 Score=24.39 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=32.6
Q ss_pred EEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCee-cc-CCCCChhhHHh
Q 020874 254 CVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAV-FD-CIGDPPEERFD 306 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~v-i~-~l~el~~~l~~ 306 (320)
-++||||...+..|-..|.++|-+. ..++....+...+ +. +-+++.+.+.+
T Consensus 283 ~~vitdSSggi~EA~~lg~Pvv~l~--~R~e~~~~g~nvl~vg~~~~~I~~a~~~ 335 (365)
T TIGR03568 283 DAVIGNSSSGIIEAPSFGVPTINIG--TRQKGRLRADSVIDVDPDKEEIVKAIEK 335 (365)
T ss_pred CEEEEcChhHHHhhhhcCCCEEeec--CCchhhhhcCeEEEeCCCHHHHHHHHHH
Confidence 4789999989999999999999775 2333222233322 32 44555555555
No 382
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.53 E-value=66 Score=24.05 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
+.+.++++.++++|.+++++|+.....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 567889999999999999999876543
No 383
>PRK01294 lipase chaperone; Provisional
Probab=32.39 E-value=3.8e+02 Score=24.35 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=21.8
Q ss_pred EEEeCCCccccCCccchHHHHHHHHHHcCCC
Q 020874 80 LLFDCDGVLVDTEKDGHRISFNDTFKEKELG 110 (320)
Q Consensus 80 viFDlDGTL~d~~~~~~~~a~~~~~~~~~~~ 110 (320)
.+.|-+|+|+++.. .+..|...+..+|-.
T Consensus 74 ~~~da~g~li~~~~--~Rd~FDYfLs~~gE~ 102 (336)
T PRK01294 74 LPLDAQGHLADTRA--LRDFFDYFLSALGEL 102 (336)
T ss_pred cccCCCCCeeccHH--HHHHHHHHhhccCCC
Confidence 33899999999876 677777777776643
No 384
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.39 E-value=3.6e+02 Score=23.88 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCC---CHHHHHHHHHHcCCCCCcEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKP---DPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP---~~~~~~~~~~~~g~~~~~~v~ 256 (320)
..++|+..++.++-|+-..-.+...++.+++..--. ... .|+...... ..-+ -..+...++++..++ =+++
T Consensus 6 ~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~-~sP--vIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--V~lH 80 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAEL-HSP--VIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP--LALH 80 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHh-CCC--EEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 568888888989988888777788888888776221 122 333221111 1111 123345555666553 1334
Q ss_pred E--ecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 257 V--EDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 257 V--GDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
. |.+..++..|.++|+.+||+.....
T Consensus 81 LDHg~~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 81 LDHHEKFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 4 3445788888999999999875443
No 385
>PRK04302 triosephosphate isomerase; Provisional
Probab=32.37 E-value=3e+02 Score=23.06 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCC----CCCHHHHHHHHHHcCC-C
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRK----KPDPAIYTLAASTLGV-D 250 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~----KP~~~~~~~~~~~~g~-~ 250 (320)
.++..+.+.++..++.|+.+.++++... .+.. +...+ .++. .+...+..+.+ ...++.+...++...- .
T Consensus 98 ~~~~e~~~~v~~a~~~Gl~~I~~v~~~~-~~~~-~~~~~-~~~I---~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~ 171 (223)
T PRK04302 98 LTLADIEAVVERAKKLGLESVVCVNNPE-TSAA-AAALG-PDYV---AVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN 171 (223)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCHH-HHHH-HhcCC-CCEE---EEeCccccccCCCCCcCCHHHHHHHHHHHHhcc
Confidence 3456778899999999998888887633 2332 22221 1111 22111112222 2456666655544432 2
Q ss_pred CCcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 020874 251 PSSCVVVEDST---IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 251 ~~~~v~VGDs~---~Di~~A~~aG~~~v~v~~g 280 (320)
.+--|++|=+. +|+..+...|+..+.+.+.
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa 204 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELGADGVLLASG 204 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCCEEEEehH
Confidence 22335556544 7888888899999988653
No 386
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=32.11 E-value=2.8e+02 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=11.0
Q ss_pred CChhHHHHHHHHHHcCCeEEE
Q 020874 177 LRPGVAKLIDQALEKGVKVAV 197 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~l 197 (320)
+.++..++.+.|++.|+.+..
T Consensus 11 p~~~~~~l~~~l~~~G~~~~~ 31 (255)
T PRK05752 11 PAEECAALAASLAEAGIFSSS 31 (255)
T ss_pred cHHHHHHHHHHHHHcCCCEEE
Confidence 344555555555555555444
No 387
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.10 E-value=1.2e+02 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
...+.+.+.++.+.++|.++++-|.+........++.+
T Consensus 75 T~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~ 112 (124)
T PF01113_consen 75 TNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEEL 112 (124)
T ss_dssp S-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred CChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHH
Confidence 34467788999999999999999988887777888876
No 388
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=32.08 E-value=1.5e+02 Score=22.76 Aligned_cols=57 Identities=16% Similarity=-0.042 Sum_probs=36.6
Q ss_pred CCCCCcE--EEEecCHh------hHHHHHHcCCeEEEEcCCCCCcccc---cCCCeeccCCCCChhhH
Q 020874 248 GVDPSSC--VVVEDSTI------GLAAAKAAGMKCIVTKSSYTAEEDF---LNADAVFDCIGDPPEER 304 (320)
Q Consensus 248 g~~~~~~--v~VGDs~~------Di~~A~~aG~~~v~v~~g~~~~~~~---~~a~~vi~~l~el~~~l 304 (320)
.+...++ +-|||-+. |...|.+.|-+.|.+.........+ ..|..++.+.++..+.|
T Consensus 69 li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL 136 (141)
T PF11071_consen 69 LIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEIL 136 (141)
T ss_pred HHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHH
Confidence 3344444 45699873 6777778888888877654443322 35777888877776643
No 389
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=32.03 E-value=1e+02 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCChh-HHHHHHHHHHcCCeEEEEcCCc
Q 020874 175 LPLRPG-VAKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 175 ~~~~pg-~~e~l~~L~~~G~~i~lvT~~~ 202 (320)
..+.++ +.++++.+++.|+++.+.||+.
T Consensus 76 Pll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 76 PLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 456777 4599999999999999999993
No 390
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=31.93 E-value=3.4e+02 Score=23.55 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCc--hHHHHHHHHHhcCcccccceeEE-eCC----CCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 182 AKLIDQALEKGVKVAVCSTSN--EKAVTAIVSFLLGPERAEKIQIF-AGD----VVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~--~~~~~~~l~~~~~~~~~~~~~i~-~~d----~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.++|+.+.+.|.+|.+-|+.. ...+...++.+......+ +.+. ++- ..+....+-..+..+.+.++++ +
T Consensus 122 ~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~-i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~p---V 197 (260)
T TIGR01361 122 FELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGN-VILCERGIRTFEKATRNTLDLSAVPVLKKETHLP---I 197 (260)
T ss_pred HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCc-EEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCC---E
Confidence 468888888899988888733 455555555552111111 1221 111 1223456777777777767653 2
Q ss_pred EEEecC--------HhhHHHHHHcCCeEEEEcCCCCCcccc
Q 020874 255 VVVEDS--------TIGLAAAKAAGMKCIVTKSSYTAEEDF 287 (320)
Q Consensus 255 v~VGDs--------~~Di~~A~~aG~~~v~v~~g~~~~~~~ 287 (320)
++--|. ..-..+|.++|...+++......+..+
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 331344 234557888999988876555544443
No 391
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.55 E-value=30 Score=23.96 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=14.0
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.++.+-|||.+|++.
T Consensus 41 ~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 41 VTLVLEEDGTVVDTEE 56 (78)
T ss_pred cEEEEeCCCCEEccHH
Confidence 4789999999999886
No 392
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=31.53 E-value=4.4e+02 Score=24.67 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=13.6
Q ss_pred EEEecCHhhHHHHHHcCCeEEEE
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
++||++.. ...|+..|++++-+
T Consensus 374 liig~~~~-~~~a~~~~ip~i~~ 395 (428)
T cd01965 374 LLIGNSHG-RYLARDLGIPLVRV 395 (428)
T ss_pred EEEECchh-HHHHHhcCCCEEEe
Confidence 66666643 55666677776654
No 393
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.50 E-value=3.5e+02 Score=23.51 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=57.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEE----cCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCH--HHHHHHHHHcCCCC
Q 020874 178 RPGVAKLIDQALEKGVKVAVC----STSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDP--AIYTLAASTLGVDP 251 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lv----T~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~--~~~~~~~~~~g~~~ 251 (320)
.+.+.+.++..++.|+++.+. +..+...+...++.+.. .-.+ .+...|.++...|.. +.+..+.+.++++
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~-~g~~--~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~- 186 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDK-LGVN--RVGIADTVGIATPRQVYELVRTLRGVVSCD- 186 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHH-cCCC--EEEECCcCCCCCHHHHHHHHHHHHHhcCCe-
Confidence 355677788889999887764 34566666666666522 1233 677788888777653 3344444444421
Q ss_pred CcEEEE----ecCHhhHHHHHHcCCeEEEE
Q 020874 252 SSCVVV----EDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 252 ~~~v~V----GDs~~Di~~A~~aG~~~v~v 277 (320)
=-++. |=...+..+|..+|+..|-.
T Consensus 187 -i~~H~Hn~~Gla~an~~~a~~aG~~~vd~ 215 (262)
T cd07948 187 -IEFHGHNDTGCAIANAYAALEAGATHIDT 215 (262)
T ss_pred -EEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 12333 33336778888899885543
No 394
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=31.23 E-value=39 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=13.5
Q ss_pred HHHHHHHcCCCCCcEEEEecC
Q 020874 240 YTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs 260 (320)
+..++++.|+...++|.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 445666778889999999984
No 395
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.21 E-value=30 Score=24.09 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=14.2
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.++.+-|||.+|++.
T Consensus 40 ~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 40 LTLVLEEDGTAVDSED 55 (81)
T ss_pred eEEEEecCCCEEccHH
Confidence 5799999999999886
No 396
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=31.10 E-value=2.2e+02 Score=30.33 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhhhc---ccc
Q 020874 237 PAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLAFC---GSL 313 (320)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~~---~~~ 313 (320)
...++..+++.|++.-....+.+-..-.+.++..|.++|. +...... ...-.++++.+|+.+.+.+.+-. ++.
T Consensus 128 K~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igyPvIV-KP~~g~g---g~Gv~iv~~~eeL~~~~~~~~~~s~~~~v 203 (1050)
T TIGR01369 128 RELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGYPVIV-RPAFTLG---GTGGGIAYNREELKEIAERALSASPINQV 203 (1050)
T ss_pred HHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCCCeEE-ECCCCCC---CCCeEEECCHHHHHHHHHHHHhcCCCCcE
Confidence 4556778888999877766665533334567788988765 3221111 01234667777777665544421 345
Q ss_pred cccccC
Q 020874 314 LQKQYV 319 (320)
Q Consensus 314 ~~~~~~ 319 (320)
+-++||
T Consensus 204 lVEe~I 209 (1050)
T TIGR01369 204 LVEKSL 209 (1050)
T ss_pred EEEEcc
Confidence 555554
No 397
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=31.10 E-value=4e+02 Score=24.06 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCC--CCCCCCC--CHHH---HHHHHHHcCCCC
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGD--VVPRKKP--DPAI---YTLAASTLGVDP 251 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d--~~~~~KP--~~~~---~~~~~~~~g~~~ 251 (320)
--..++|+..++.|+-|+-..-.+...+..+++..--. .-. .|+... ....... -..+ +...+++.++.-
T Consensus 10 v~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~-~sP--vIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~V 86 (321)
T PRK07084 10 VNTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVET-KSP--VILQVSKGARKYANATLLRYMAQGAVEYAKELGCPI 86 (321)
T ss_pred cCHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHh-CCC--EEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCC
Confidence 34778999999999999998878888888888876221 122 333221 1111111 1112 233344443221
Q ss_pred CcEEEE--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 252 SSCVVV--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 252 ~~~v~V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
.=+++. |++...+..|..+|+.+||+.....+
T Consensus 87 PV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp 120 (321)
T PRK07084 87 PIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLP 120 (321)
T ss_pred cEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCC
Confidence 123343 45567888999999999999755433
No 398
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=30.86 E-value=1.8e+02 Score=26.82 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCChhHHHHHHHHHHc-CCe-EEEEcCCch
Q 020874 175 LPLRPGVAKLIDQALEK-GVK-VAVCSTSNE 203 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~-G~~-i~lvT~~~~ 203 (320)
..+.+++.++++.+++. |+. +.+.||+..
T Consensus 117 Pllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 117 PTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 55678899999999886 874 888999853
No 399
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.83 E-value=2.2e+02 Score=22.80 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 020874 237 PAIYTLAASTLGVDPSSCVVVEDSTIGLA 265 (320)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~v~VGDs~~Di~ 265 (320)
.+.+..+++..+-...++.++|.+...++
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~ 62 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLE 62 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 34444444443333334455555554333
No 400
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=30.82 E-value=29 Score=30.20 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcC-cccccceeEEeCC-----CCCCCCCCHHHHHHHHHHcC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLG-PERAEKIQIFAGD-----VVPRKKPDPAIYTLAASTLG 248 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~-~~~~~~~~i~~~d-----~~~~~KP~~~~~~~~~~~~g 248 (320)
+.-+|++-++|...-+. +.+.+.|.....+...++..+-- ...+. ..+-.+ +...-| -+...|
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~--~RlyR~~C~~~~g~yvK--------dls~~~ 198 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIIS--HRLYRDSCTLKDGNYVK--------DLSVLG 198 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeee--eeecccceEeECCcEEE--------Ecceec
Confidence 34468888888888776 77888888888888888777632 22222 111111 111112 124556
Q ss_pred CCCCcEEEEecCHhhHHHHHHcCCeE
Q 020874 249 VDPSSCVVVEDSTIGLAAAKAAGMKC 274 (320)
Q Consensus 249 ~~~~~~v~VGDs~~Di~~A~~aG~~~ 274 (320)
-+..++++|+|++.-..+=-+-|++.
T Consensus 199 ~dL~~viIiDNsP~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 199 RDLSKVIIVDNSPQSYRLQPENGIPI 224 (262)
T ss_pred cCcccEEEEcCChHHhccCccCCCcc
Confidence 68889999999998776666666653
No 401
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=30.71 E-value=89 Score=29.39 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCChhHHHHHHHHHHcCC-eEEEEcCCchHH----HHHHHHHhcCcccc
Q 020874 146 SDEEERKQFIASLHKRKT-ELFMVLIEKKLLPLRPGVAKLIDQALEKGV-KVAVCSTSNEKA----VTAIVSFLLGPERA 219 (320)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pg~~e~l~~L~~~G~-~i~lvT~~~~~~----~~~~l~~~~~~~~~ 219 (320)
++-+++++++..+..+.. ....-++..+...+.++..++++..++.|+ +|-+.||+-... ....|+..|.
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~---- 166 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGV---- 166 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCC----
Confidence 455666666665554431 111122334557889999999999999998 888999863322 2233333332
Q ss_pred cceeEEeCCCCCCCCCCHHHH
Q 020874 220 EKIQIFAGDVVPRKKPDPAIY 240 (320)
Q Consensus 220 ~~~~i~~~d~~~~~KP~~~~~ 240 (320)
. .++.+-+....++.+..+
T Consensus 167 ~--tvYlsFDG~~e~~~~~~~ 185 (475)
T COG1964 167 N--TVYLSFDGVTPKTNWKNH 185 (475)
T ss_pred c--EEEEecCCCCCCchhhHh
Confidence 1 555554444566665553
No 402
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.67 E-value=3.8e+02 Score=23.69 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCC---CHHHHHHHHHHcCCCCCcEE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKP---DPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP---~~~~~~~~~~~~g~~~~~~v 255 (320)
...++|+..+++|+-|+-..-.+...+..+++..- ...-. .|+...... ..-+ -..++..++++.+++ =++
T Consensus 5 ~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe-~~~sP--vIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vP--V~l 79 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTTNLETTISILNAIE-RSGLP--NFIQIAPTNAQLSGYDYIYEIVKRHADKMDVP--VSL 79 (283)
T ss_pred cHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHH-HhCCC--EEEECcHhHHhhCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 35678888888888888887777777777777651 11111 233221111 1111 122344455566553 123
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g 280 (320)
+. |.+..++..|.++|+.+||+...
T Consensus 80 HLDH~~~~e~i~~Ai~~GftSVM~DgS 106 (283)
T PRK07998 80 HLDHGKTFEDVKQAVRAGFTSVMIDGA 106 (283)
T ss_pred ECcCCCCHHHHHHHHHcCCCEEEEeCC
Confidence 33 23445777777888888887543
No 403
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.43 E-value=1.1e+02 Score=22.42 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhc
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~ 214 (320)
+++.++.+++++.|+.+..++..+...+...++..+
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~ 81 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG 81 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhc
Confidence 666778888888899999999988888888888774
No 404
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=30.38 E-value=4.4e+02 Score=24.32 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCC-chHHHHHHHHHhcCcccccceeEEeC--CC-CCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTS-NEKAVTAIVSFLLGPERAEKIQIFAG--DV-VPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~-~~~~~~~~l~~~~~~~~~~~~~i~~~--d~-~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
+-+.+.++++++.++.+.+-.+. .....-..+...|. +.+ .+... +. ...+..++.-+..+++.++++
T Consensus 119 ~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGa-d~I---~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IP---- 190 (369)
T TIGR01304 119 ELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGA-DLL---VIQGTLVSAEHVSTSGEPLNLKEFIGELDVP---- 190 (369)
T ss_pred HHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCC-CEE---EEeccchhhhccCCCCCHHHHHHHHHHCCCC----
Confidence 33578889999987655554332 22222233333322 221 12111 11 112344677777888887763
Q ss_pred EEEecCH--hhHHHHHHcCCeEEEEcCCC
Q 020874 255 VVVEDST--IGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 255 v~VGDs~--~Di~~A~~aG~~~v~v~~g~ 281 (320)
|++||-. .|...+..+|+..|++..+.
T Consensus 191 VI~G~V~t~e~A~~~~~aGaDgV~~G~gg 219 (369)
T TIGR01304 191 VIAGGVNDYTTALHLMRTGAAGVIVGPGG 219 (369)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 3446644 68888888999999865544
No 405
>PLN03017 trehalose-phosphatase
Probab=30.33 E-value=81 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIV 210 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l 210 (320)
.+.+++.+.|+.|. +|++++|+|+.+...+...+
T Consensus 133 ~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 133 FMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred cCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 56689999999999 67999999999988777664
No 406
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.04 E-value=2.6e+02 Score=21.56 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=8.2
Q ss_pred HHHHHHHHHcCCeEEEEc
Q 020874 182 AKLIDQALEKGVKVAVCS 199 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT 199 (320)
.++++...+.+..+..+|
T Consensus 44 e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 44 EEFIDAAIETDADAILVS 61 (137)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 344444444444444444
No 407
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=29.76 E-value=56 Score=21.95 Aligned_cols=21 Identities=19% Similarity=0.117 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCCCcEEEEecC
Q 020874 240 YTLAASTLGVDPSSCVVVEDS 260 (320)
Q Consensus 240 ~~~~~~~~g~~~~~~v~VGDs 260 (320)
+..++++.|+.+.++|.|||-
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 556777888899999999974
No 408
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=29.46 E-value=31 Score=23.63 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=13.9
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.|+++-|||.+|++.
T Consensus 39 ~~l~L~eDGT~VddEe 54 (74)
T smart00266 39 VTLVLEEDGTIVDDEE 54 (74)
T ss_pred cEEEEecCCcEEccHH
Confidence 4789999999999875
No 409
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.24 E-value=72 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHcCCeEEEEc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCS 199 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT 199 (320)
.+.+.++++.++++|.++..+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4778999999999999999998
No 410
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=29.19 E-value=2.2e+02 Score=23.97 Aligned_cols=60 Identities=27% Similarity=0.180 Sum_probs=40.8
Q ss_pred eEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEE-cCCCCCc
Q 020874 223 QIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKAAGMKCIVT-KSSYTAE 284 (320)
Q Consensus 223 ~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~aG~~~v~v-~~g~~~~ 284 (320)
.|+.-|-..+.+|+. -+..++++ --.+...+|-+=|. .|...|+.+|+.+|+- ..||...
T Consensus 100 ~IIA~DaT~R~RP~~-~~~~~i~~-~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~ 161 (229)
T COG3010 100 DIIAFDATDRPRPDG-DLEELIAR-IKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGY 161 (229)
T ss_pred cEEEeecccCCCCcc-hHHHHHHH-hhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCC
Confidence 466666667788886 56666665 22345556655444 7999999999999994 3566653
No 411
>PRK00208 thiG thiazole synthase; Reviewed
Probab=29.16 E-value=3.8e+02 Score=23.20 Aligned_cols=90 Identities=21% Similarity=0.224 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHH-----HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc---CCCCCc
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKA-----VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL---GVDPSS 253 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~-----~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~---g~~~~~ 253 (320)
..+++.+...++.+.-=|++.... +-+..++++..++.. --+.+|+ ...-|++......++.+ |+.
T Consensus 52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iK--lEVi~d~-~~llpd~~~tv~aa~~L~~~Gf~--- 125 (250)
T PRK00208 52 DNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIK--LEVIGDD-KTLLPDPIETLKAAEILVKEGFV--- 125 (250)
T ss_pred chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEE--EEEecCC-CCCCcCHHHHHHHHHHHHHCCCE---
Confidence 566677766677665545442221 223444455555554 2233443 45678888888888888 773
Q ss_pred EE-EEecCHhhHHHHHHcCCeEEEE
Q 020874 254 CV-VVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 254 ~v-~VGDs~~Di~~A~~aG~~~v~v 277 (320)
++ |.-|++.-.+...++|+.+|+.
T Consensus 126 vlpyc~~d~~~ak~l~~~G~~~vmP 150 (250)
T PRK00208 126 VLPYCTDDPVLAKRLEEAGCAAVMP 150 (250)
T ss_pred EEEEeCCCHHHHHHHHHcCCCEeCC
Confidence 67 8899999999999999999853
No 412
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.15 E-value=68 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.5
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
-.+.+.++++.++++|.+++.+|+.....
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 34789999999999999999999876543
No 413
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.01 E-value=2.1e+02 Score=22.97 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCeEEEEcCCCCC
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA---GMKCIVTKSSYTA 283 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a---G~~~v~v~~g~~~ 283 (320)
...++...++.+|+....+..|+|...++..+-+. ....|.+.+|-..
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~ 70 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 34577778889999988888999999887776542 5567777765443
No 414
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=28.77 E-value=4.4e+02 Score=23.79 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCch
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
|=+..+.+.|+++|++++|+|.+..
T Consensus 52 P~v~~L~~~L~~~G~~~~IlSRGYg 76 (326)
T PF02606_consen 52 PLVIWLARLLQARGYRPAILSRGYG 76 (326)
T ss_pred HHHHHHHHHHHhcCCceEEEcCCCC
Confidence 6688899999999999999997543
No 415
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=28.76 E-value=4.3e+02 Score=23.69 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCCC---HHHHHHHHHHcC-CCCCcEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKPD---PAIYTLAASTLG-VDPSSCV 255 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP~---~~~~~~~~~~~g-~~~~~~v 255 (320)
+.++|+..++.|+-|+...-.+..++..+++..-- ..-. .|+...... ..-+. ..+...++++.. ++ =++
T Consensus 5 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~-~~sP--vIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VP--Val 79 (307)
T PRK05835 5 GNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNE-ENSP--LFIQASEGAIKYMGIDMAVGMVKIMCERYPHIP--VAL 79 (307)
T ss_pred HHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHH-HCCC--EEEEcCccHHhhCChHHHHHHHHHHHHhcCCCe--EEE
Confidence 56888888888998888887788888888877621 1111 333222211 11111 123333334442 32 134
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~ 281 (320)
+. |.+..++..|..+|+.+||+....
T Consensus 80 HLDHg~~~e~i~~ai~~GftSVM~DgS~ 107 (307)
T PRK05835 80 HLDHGTTFESCEKAVKAGFTSVMIDASH 107 (307)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 44 445678888888999999987544
No 416
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=28.53 E-value=1.5e+02 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.128 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecCHhhH----HHHHHcCCeEEEEcCC
Q 020874 237 PAIYTLAASTLGVDPSSCVVVEDSTIGL----AAAKAAGMKCIVTKSS 280 (320)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~v~VGDs~~Di----~~A~~aG~~~v~v~~g 280 (320)
.+-...+++++|---+-+++|||++.|+ +++...|+....+..|
T Consensus 208 ~~~Va~~Akk~gkGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGg 255 (505)
T PF10113_consen 208 MEEVAELAKKYGKGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGG 255 (505)
T ss_pred HHHHHHHHHHhCCCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4445667888988888999999999665 5566678887777766
No 417
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.48 E-value=70 Score=29.08 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCc
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~ 202 (320)
.-+.|++.++++.+++.|+.+.+.||+.
T Consensus 64 Pll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 64 PLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 5578999999999999999999999985
No 418
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=28.42 E-value=4.5e+02 Score=23.84 Aligned_cols=91 Identities=12% Similarity=0.140 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc-------CCCCCcE
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL-------GVDPSSC 254 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~-------g~~~~~~ 254 (320)
..++++|+++|+.+.+.+-. ...+..+|+.+|. + .+..+.. + ..+.......+.+.. ...|+ +
T Consensus 17 k~~I~eL~~~GheV~it~R~-~~~~~~LL~~yg~----~--y~~iG~~-g-~~~~~Kl~~~~~R~~~l~~~~~~~~pD-v 86 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARD-KDETEELLDLYGI----D--YIVIGKH-G-DSLYGKLLESIERQYKLLKLIKKFKPD-V 86 (335)
T ss_pred HHHHHHHHhCCCEEEEEEec-cchHHHHHHHcCC----C--eEEEcCC-C-CCHHHHHHHHHHHHHHHHHHHHhhCCC-E
Confidence 57889999999999887764 4567788887643 2 2222222 1 111111111111111 22443 3
Q ss_pred EEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 020874 255 VVVEDSTIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 255 v~VGDs~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
++-..|+.=...|...|+++|.+.+...
T Consensus 87 ~is~~s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 87 AISFGSPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred EEecCcHHHHHHHHHhCCCeEEEecCch
Confidence 3334555556689999999999876543
No 419
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=28.42 E-value=2.6e+02 Score=21.01 Aligned_cols=64 Identities=3% Similarity=-0.054 Sum_probs=39.9
Q ss_pred hhHHHHHHH-HHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHH
Q 020874 179 PGVAKLIDQ-ALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAAS 245 (320)
Q Consensus 179 pg~~e~l~~-L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~ 245 (320)
+.+.+.++. |.+.++-|.++|..-...+...++.+. ..... -+...+.-....|..+.+..-.+
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~--~~~Pa-IieIP~k~~~y~~~~d~i~~~~~ 110 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHT--RSIPA-VLEIPSKDHPYDASKDSILRRAR 110 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcC--CcCCE-EEEECCCCCCCCCcccHHHHHHH
Confidence 667788888 677789999999877777777777764 33332 22333322445555555444443
No 420
>PLN02423 phosphomannomutase
Probab=28.33 E-value=1.1e+02 Score=26.22 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.3
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~ 211 (320)
.+.|...++|++|+++ ++++++|+.........+.
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 3457888999999987 9999999986554444443
No 421
>PRK11059 regulatory protein CsrD; Provisional
Probab=28.21 E-value=1.7e+02 Score=29.06 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=56.0
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeC--CCCCCCCCCHHHH---HHHHHHcCCCC
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAG--DVVPRKKPDPAIY---TLAASTLGVDP 251 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~--d~~~~~KP~~~~~---~~~~~~~g~~~ 251 (320)
-.+.+.++++.|++.|+++++--=+....-...++.+. ++.+.+-.+ .++....-+..++ ..+++.+|+
T Consensus 531 ~~~~~~~~l~~L~~~G~~iaiddfG~g~~s~~~L~~l~----~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i-- 604 (640)
T PRK11059 531 HISRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELN----VELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTET-- 604 (640)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCcccHHHHHhCC----CCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCC--
Confidence 34778999999999999999964333333334566553 221122111 1112222223333 334555665
Q ss_pred CcEEEEe-cCHhhHHHHHHcCCeEEE
Q 020874 252 SSCVVVE-DSTIGLAAAKAAGMKCIV 276 (320)
Q Consensus 252 ~~~v~VG-Ds~~Di~~A~~aG~~~v~ 276 (320)
+++.-| ++..+.+.+++.|+..+.
T Consensus 605 -~viAegVEt~~~~~~l~~lGvd~~Q 629 (640)
T PRK11059 605 -QVFATGVESREEWQTLQELGVSGGQ 629 (640)
T ss_pred -eEEEEEeCCHHHHHHHHHhCCCeee
Confidence 477777 777899999999998776
No 422
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=28.14 E-value=4.3e+02 Score=23.47 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEE----ecCH---hhHHHHHHcCCeEEEEcCCCCCcccccCCCeecc
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVV----EDST---IGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFD 295 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~V----GDs~---~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~ 295 (320)
.+.+.+...+...++.+.+++++ |.++ .=++.|++.|+.+|.+...... ...+.+|+.+.
T Consensus 111 d~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s-~La~~aD~~I~ 177 (296)
T PRK12570 111 DDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDS-PIAKIADIAIS 177 (296)
T ss_pred CcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC-hhHHhCCEEEe
Confidence 45667777777788888776544 3443 2378888899999998753322 12235666654
No 423
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=28.09 E-value=3.6e+02 Score=22.56 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEec--CHhhHHHHHHcC-CeEEEEcCC
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVED--STIGLAAAKAAG-MKCIVTKSS 280 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGD--s~~Di~~A~~aG-~~~v~v~~g 280 (320)
++-+.++.+++..++ .++.-|+ +..|++.+.+.| +..|++.+.
T Consensus 177 ~d~~~i~~l~~~~~i---pvia~GGi~~~~di~~~~~~g~~~gv~vg~a 222 (233)
T PRK00748 177 PNVEATRELAAAVPI---PVIASGGVSSLDDIKALKGLGAVEGVIVGRA 222 (233)
T ss_pred CCHHHHHHHHHhCCC---CEEEeCCCCCHHHHHHHHHcCCccEEEEEHH
Confidence 888999998887653 4777774 447999999998 999998755
No 424
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=27.98 E-value=1.5e+02 Score=26.83 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCch
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
|=+..+.+.|+++|++++++|-+..
T Consensus 64 P~vi~la~~l~~rG~~~gvvSRGYg 88 (336)
T COG1663 64 PVVIWLAEALQARGVRVGVVSRGYG 88 (336)
T ss_pred HHHHHHHHHHHhcCCeeEEEecCcC
Confidence 6689999999999999999996644
No 425
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=27.68 E-value=85 Score=23.75 Aligned_cols=27 Identities=48% Similarity=0.735 Sum_probs=23.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCC
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTS 201 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~ 201 (320)
.+.+|-+.++++.++++|+++++|.-.
T Consensus 58 ~~~~~~l~~~~~~a~e~GVk~yvCe~s 84 (120)
T COG2044 58 HPNFPPLEELIKQAIEAGVKIYVCEQS 84 (120)
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEEcch
Confidence 456788999999999999999999754
No 426
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=27.65 E-value=4.5e+02 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHcCCeEEE-EcCCchHHHHHHHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAV-CSTSNEKAVTAIVSF 212 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~l-vT~~~~~~~~~~l~~ 212 (320)
.||..+++++|+++|+.+.+ -||.+.+.+.+.++.
T Consensus 176 ~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~ 211 (380)
T TIGR00221 176 EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKA 211 (380)
T ss_pred CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHc
Confidence 58899999999999998876 456555555554443
No 427
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=27.64 E-value=1e+02 Score=24.91 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHcCCCCCcEEEEecCHhhHHHH-HHcCCeEEEEc--CCCCCcccccCCCeeccCCCCChhhHHhhhhcccccccccC
Q 020874 244 ASTLGVDPSSCVVVEDSTIGLAAA-KAAGMKCIVTK--SSYTAEEDFLNADAVFDCIGDPPEERFDLAFCGSLLQKQYV 319 (320)
Q Consensus 244 ~~~~g~~~~~~v~VGDs~~Di~~A-~~aG~~~v~v~--~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~~~~~~~~~~~ 319 (320)
++++|++......| ++..|+..| ...|.++|.=. .||-. .-.+++++-+|+......+ -.++++-++||
T Consensus 1 l~~~gip~~~~~~i-~~~~~l~~a~~~iG~P~vlK~~~~GYDG-----kGq~~i~~~~dl~~a~~~~-~~~~~ilE~~v 72 (172)
T PF02222_consen 1 LDELGIPTAPYATI-DSLEDLEEAAESIGFPAVLKTRRGGYDG-----KGQFVIRSEEDLEKAWQEL-GGGPCILEEFV 72 (172)
T ss_dssp HHHTT--B-EEEEE-SSHHHHHHHHHHHTSSEEEEESSSSCTT-----TTEEEESSGGGHHHHHHHT-TTSCEEEEE--
T ss_pred CcccCCCCCCeEEE-CCHHHHHHHHHHcCCCEEEEccCcCcCC-----CccEEECCHHHHHHHHHhc-CCCcEEEEecc
Confidence 45677776665555 555576554 66899998742 22222 2346888888887765555 56677766665
No 428
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=2.4e+02 Score=22.58 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=29.4
Q ss_pred ChhHHHHHHHHHHcCCe-EEEEcCCchHHHHHHHHHhcCcc
Q 020874 178 RPGVAKLIDQALEKGVK-VAVCSTSNEKAVTAIVSFLLGPE 217 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~-i~lvT~~~~~~~~~~l~~~~~~~ 217 (320)
.||..+-.++|+.+|+. |+++|-++.-.+..+-+.++...
T Consensus 64 vPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~ 104 (171)
T KOG0541|consen 64 VPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGAND 104 (171)
T ss_pred CchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccc
Confidence 49999999999999984 55566666666777777764433
No 429
>PRK13937 phosphoheptose isomerase; Provisional
Probab=27.46 E-value=84 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=24.3
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
-.+.+.+.++.++++|.+++.+|+.....
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 35788999999999999999999876543
No 430
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=27.28 E-value=3.3e+02 Score=25.02 Aligned_cols=97 Identities=22% Similarity=0.218 Sum_probs=53.4
Q ss_pred hhHHH--HHHHHHHcCCeEEEEcCCchHHH--HHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHH---HHHHcCCCC
Q 020874 179 PGVAK--LIDQALEKGVKVAVCSTSNEKAV--TAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTL---AASTLGVDP 251 (320)
Q Consensus 179 pg~~e--~l~~L~~~G~~i~lvT~~~~~~~--~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~---~~~~~g~~~ 251 (320)
+|+.+ .+..+.. +.+++++||...... ..++..+. ...+....++..+ .+..|.- +.+.. .+-+.|++.
T Consensus 19 ~gl~~~~~l~~~~~-~~k~~ivtd~~v~~~y~~~~~~~l~-~~g~~v~~~~lp~-GE~~Ksl-~~~~~i~~~ll~~~~~R 94 (360)
T COG0337 19 SGLLSDAELAELLA-GRKVAIVTDETVAPLYLEKLLATLE-AAGVEVDSIVLPD-GEEYKSL-ETLEKIYDALLEAGLDR 94 (360)
T ss_pred CCcccchhhhhhcc-CCeEEEEECchhHHHHHHHHHHHHH-hcCCeeeEEEeCC-CcccccH-HHHHHHHHHHHHcCCCC
Confidence 44444 3333333 459999998765443 33333331 1122211233332 2344533 33333 334567777
Q ss_pred Cc-EEEEecCH-hhHHHHHHc----CCeEEEEcC
Q 020874 252 SS-CVVVEDST-IGLAAAKAA----GMKCIVTKS 279 (320)
Q Consensus 252 ~~-~v~VGDs~-~Di~~A~~a----G~~~v~v~~ 279 (320)
.. +|.+|-+. .|+.+..++ |+.+|.|..
T Consensus 95 ~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPT 128 (360)
T COG0337 95 KSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPT 128 (360)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHcCCCeEeccc
Confidence 54 56888888 799888776 999988863
No 431
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=27.24 E-value=37 Score=23.55 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.8
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.|+++-|||.+|++.
T Consensus 41 ~~lvL~eDGTeVddEe 56 (78)
T cd01615 41 VTLVLEEDGTEVDDEE 56 (78)
T ss_pred eEEEEeCCCcEEccHH
Confidence 4689999999998875
No 432
>PRK03670 competence damage-inducible protein A; Provisional
Probab=27.08 E-value=2e+02 Score=24.88 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=40.9
Q ss_pred EEeCCCCCCCC---CCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----CCeEEEEcCCCC
Q 020874 224 IFAGDVVPRKK---PDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA----GMKCIVTKSSYT 282 (320)
Q Consensus 224 i~~~d~~~~~K---P~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a----G~~~v~v~~g~~ 282 (320)
+..++++..++ -+...+...+..+|++...+..|+|...++..+.+. +...|.+.+|-.
T Consensus 6 i~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlG 71 (252)
T PRK03670 6 ITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLG 71 (252)
T ss_pred EEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCcc
Confidence 34555554333 245567777889999998899999999988877432 356777776644
No 433
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=26.97 E-value=5.4e+02 Score=24.23 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v 277 (320)
+..-++..+++.+. -+++|.+. .-..|+..|++.+-+
T Consensus 361 D~~~l~~~i~~~~~----dliig~s~-~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 361 DLEDLEDLACAAGA----DLLITNSH-GRALAQRLALPLVRA 397 (432)
T ss_pred CHHHHHHHHhhcCC----CEEEECcc-hHHHHHHcCCCEEEe
Confidence 34444555554432 26777774 366788888887654
No 434
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=26.76 E-value=80 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+.+.+.++.++++|.++..+|+.....
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 4778999999999999999999876543
No 435
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.74 E-value=1.2e+02 Score=26.67 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=24.1
Q ss_pred CCCChhH-HHHHHHHHHcCCeEEEEcCCc
Q 020874 175 LPLRPGV-AKLIDQALEKGVKVAVCSTSN 202 (320)
Q Consensus 175 ~~~~pg~-~e~l~~L~~~G~~i~lvT~~~ 202 (320)
..+.++. .++++.+++.|+.+.+.||+.
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 5567875 699999999999999999985
No 436
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.34 E-value=85 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAV 206 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~ 206 (320)
.+.+.++++.++++|.++..+|+......
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 47788999999999999999998766543
No 437
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.30 E-value=4.5e+02 Score=24.65 Aligned_cols=100 Identities=14% Similarity=0.168 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHcCCeEEEEcC---------CchHHHHHHHHHhcCc---ccccceeEEeCCC--CCCCCCCHHHHHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCST---------SNEKAVTAIVSFLLGP---ERAEKIQIFAGDV--VPRKKPDPAIYTLAA 244 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~---------~~~~~~~~~l~~~~~~---~~~~~~~i~~~d~--~~~~KP~~~~~~~~~ 244 (320)
+++..+++.+++.|.++..+.. +.....+.+++++... .--....+++.-. -..+.-+-+-+++++
T Consensus 103 dDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL 182 (427)
T cd01971 103 DDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVL 182 (427)
T ss_pred cCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHH
Confidence 3344555555555677776642 1222344455544211 1111123443211 112334667788999
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 020874 245 STLGVDPSSCVVVEDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 245 ~~~g~~~~~~v~VGDs~~Di~~A~~aG~~~v~v~ 278 (320)
+.+|+.+..++--+.+..|++.+.++....+.-.
T Consensus 183 ~~~Gl~v~~~~~~~~~~~ei~~~~~A~~niv~~~ 216 (427)
T cd01971 183 EGIGLKVNILFGPESNGEELRSIPKAQFNLVLSP 216 (427)
T ss_pred HHCCCeEEEEECCCCCHHHHHhcccCcEEEEEcH
Confidence 9999976433323456689999888887766543
No 438
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=26.28 E-value=60 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=19.8
Q ss_pred eEEEEeCCCccccCCccchHHHHHHHHHH
Q 020874 78 SALLFDCDGVLVDTEKDGHRISFNDTFKE 106 (320)
Q Consensus 78 k~viFDlDGTL~d~~~~~~~~a~~~~~~~ 106 (320)
..|+||=|+.-+|+.. ...+++.+.+.
T Consensus 25 s~iiFDNded~tdSa~--llp~ie~a~~~ 51 (65)
T PF06117_consen 25 SDIIFDNDEDKTDSAA--LLPAIEQARAD 51 (65)
T ss_pred CCeeecCCCcccchHH--HHHHHHHHHHH
Confidence 3699999999999886 45556555443
No 439
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.15 E-value=78 Score=25.92 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCeEEEEcCCchHH-------HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEE
Q 020874 183 KLIDQALEKGVKVAVCSTSNEKA-------VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 183 e~l~~L~~~G~~i~lvT~~~~~~-------~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v 255 (320)
.+|..++++|++++++.+.-... .....+.+ ...|+ .|+..++ +- ..-+.++|+.++++.
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~--l~~f~--~i~aqs~--------~d-a~r~~~lG~~~~~v~ 175 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPL--LSRFD--RILAQSE--------AD-AERFRKLGAPPERVH 175 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHH--GGG-S--EEEESSH--------HH-HHHHHTTT-S--SEE
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHH--HHhCC--EEEECCH--------HH-HHHHHHcCCCcceEE
Confidence 67788899999999997532211 11222322 23455 5665553 12 334668999999999
Q ss_pred EEecCHhhH
Q 020874 256 VVEDSTIGL 264 (320)
Q Consensus 256 ~VGDs~~Di 264 (320)
+.||---|.
T Consensus 176 v~GnlKfd~ 184 (186)
T PF04413_consen 176 VTGNLKFDQ 184 (186)
T ss_dssp E---GGG--
T ss_pred EeCcchhcc
Confidence 999876665
No 440
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=26.15 E-value=1e+02 Score=27.94 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=37.4
Q ss_pred cEEEEec--CHhhHHHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhhh
Q 020874 253 SCVVVED--STIGLAAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLAF 309 (320)
Q Consensus 253 ~~v~VGD--s~~Di~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~~ 309 (320)
.++..|. +..|+.-+..+|+..|++.+..-......+++.+..-++.+.+.|....+
T Consensus 256 pVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~ 314 (333)
T TIGR02151 256 PIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMF 314 (333)
T ss_pred eEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4666665 34799999999999999865433222224566666667777777766553
No 441
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=26.14 E-value=4.1e+02 Score=24.66 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHH---HHHHHHHhcCcccccceeEEeCC-CCCCCCCCHHHHHHHHHHcCCCCCcE
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKA---VTAIVSFLLGPERAEKIQIFAGD-VVPRKKPDPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~---~~~~l~~~~~~~~~~~~~i~~~d-~~~~~KP~~~~~~~~~~~~g~~~~~~ 254 (320)
.+...+++.+++.++...+... .... ....++.++. .++... +.-..--+....+.+++++|++....
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~-e~~l~~~~~~~l~~~gi-------~~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~ 122 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGP-EAPLVLGLVDALEEAGI-------PVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEY 122 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECC-chHHHHHHHHHHHHCCC-------eEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCe
Confidence 4566677777777776666433 2221 2233343322 222221 10011123466677889999987776
Q ss_pred EEEecCHhhH-HHHHHcCCeEEEEcCCCCCcccccCCCeeccCCCCChhhHHhhh
Q 020874 255 VVVEDSTIGL-AAAKAAGMKCIVTKSSYTAEEDFLNADAVFDCIGDPPEERFDLA 308 (320)
Q Consensus 255 v~VGDs~~Di-~~A~~aG~~~v~v~~g~~~~~~~~~a~~vi~~l~el~~~l~~~~ 308 (320)
..+.| ..|+ +.+...|.+.+.++....... .--.++++.+|+.+.+.++.
T Consensus 123 ~~~~~-~~~~~~~~~~~g~P~~VvKp~~~~gg---~Gv~~v~~~~el~~~~~~~~ 173 (423)
T TIGR00877 123 EVFTD-PEEALSYIQEKGAPAIVVKADGLAAG---KGVIVAKTNEEAIKAVEEIL 173 (423)
T ss_pred EEECC-HHHHHHHHHhcCCCeEEEEECCCCCC---CCEEEECCHHHHHHHHHHHH
Confidence 66654 4444 455677877233442211110 12346677777766555443
No 442
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.08 E-value=4.6e+02 Score=23.17 Aligned_cols=98 Identities=18% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCCC---HHHHHHHHHHcCCCCCcEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKPD---PAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP~---~~~~~~~~~~~g~~~~~~v~ 256 (320)
+.++|+..++.++-|+...-.+...++.+++..--.. .. .|+...... ..-+. ..+...++++..++ =+++
T Consensus 6 ~k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~-sP--vIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VP--ValH 80 (284)
T PRK12857 6 VAELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEK-SP--VIIQASQGAIKYAGIEYISAMVRTAAEKASVP--VALH 80 (284)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhC-CC--EEEEechhHhhhCCHHHHHHHHHHHHHHCCCC--EEEE
Confidence 5788888888888888887777788888887762211 22 233221111 11111 12344455666653 1233
Q ss_pred E--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 257 V--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 257 V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
. |.+..++..|..+|+.+||+.....+
T Consensus 81 LDH~~~~e~i~~ai~~GftSVM~DgS~lp 109 (284)
T PRK12857 81 LDHGTDFEQVMKCIRNGFTSVMIDGSKLP 109 (284)
T ss_pred CCCCCCHHHHHHHHHcCCCeEEEeCCCCC
Confidence 3 33446888899999999998755433
No 443
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=25.96 E-value=1.4e+02 Score=27.23 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=44.5
Q ss_pred HHHHc-CCeE-EEEcCCc--hHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc-CCCCCcEEEEecCH
Q 020874 187 QALEK-GVKV-AVCSTSN--EKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL-GVDPSSCVVVEDST 261 (320)
Q Consensus 187 ~L~~~-G~~i-~lvT~~~--~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~-g~~~~~~v~VGDs~ 261 (320)
+|++. ++.+ .++|+.. ..+-....+.++. ...+ ..+..+.....+--..++..+.+.+ ...|+=+++.||+.
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~ 78 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPD--YLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRN 78 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEE--EE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSH
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCC--cccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 45554 5444 4566665 6666666665544 2332 2333232111221122222222222 23677788899999
Q ss_pred hh---HHHHHHcCCeEEEEcCC
Q 020874 262 IG---LAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 262 ~D---i~~A~~aG~~~v~v~~g 280 (320)
.= ..+|...+++.+.+..|
T Consensus 79 ~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES--
T ss_pred hHHHHHHHHHHhCCCEEEecCC
Confidence 54 45566679999999887
No 444
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=25.67 E-value=73 Score=27.65 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCC--CcEEEEecCH-hhHHHHHHcCCeEEE
Q 020874 237 PAIYTLAASTLGVDP--SSCVVVEDST-IGLAAAKAAGMKCIV 276 (320)
Q Consensus 237 ~~~~~~~~~~~g~~~--~~~v~VGDs~-~Di~~A~~aG~~~v~ 276 (320)
.+.|..-++.+|++| .++-||.|+. +--.+|.-.|+.++.
T Consensus 89 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 89 QELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 467888899999998 6789999998 788888888865443
No 445
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=25.60 E-value=1.5e+02 Score=27.68 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCeEEEEc--CCchHHHHHHHHHhcCcccccceeEEeCCCCC------CCCCC--HHHHHHHHHHcCCC
Q 020874 181 VAKLIDQALEKGVKVAVCS--TSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP------RKKPD--PAIYTLAASTLGVD 250 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT--~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~------~~KP~--~~~~~~~~~~~g~~ 250 (320)
+.++++ .++.|.+++|+| +.+...++..++... ..-....-.-++..+. -.+|. .+....++++.|++
T Consensus 4 l~~lv~-~~k~G~~~gI~SVCsahp~VieAAl~~a~-~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~ 81 (424)
T PF08013_consen 4 LKELVK-RHKAGEPVGIYSVCSAHPLVIEAALERAK-EDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFP 81 (424)
T ss_dssp -HHHHH-HHHTT--B-EEEE----HHHHHHHHHHCC-CS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--
T ss_pred HHHHHH-HHhCCCCCceEEecCCCHHHHHHHHHHHH-hcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCc
Confidence 445555 556677777766 345666777777652 2223211223444432 12332 34566778899999
Q ss_pred CCcEEEEecCH---------hhHHHHH---------HcCCeEEEEcC
Q 020874 251 PSSCVVVEDST---------IGLAAAK---------AAGMKCIVTKS 279 (320)
Q Consensus 251 ~~~~v~VGDs~---------~Di~~A~---------~aG~~~v~v~~ 279 (320)
.++++.-||.. .|-.|++ +||..-|++..
T Consensus 82 ~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~KIHLD~ 128 (424)
T PF08013_consen 82 RDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFTKIHLDC 128 (424)
T ss_dssp GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--EEEE--
T ss_pred hhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCceEeecC
Confidence 99999999974 2333333 36888887753
No 446
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=25.58 E-value=40 Score=23.47 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.9
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.|+++-|||.+|++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4789999999998875
No 447
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=25.55 E-value=4e+02 Score=22.23 Aligned_cols=74 Identities=16% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchH-HHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCC--CcEEEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEK-AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDP--SSCVVV 257 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~-~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~--~~~v~V 257 (320)
+..+++.|++. +++++++|.-.. .=...+.+..+. ..- .+-+++. + .-+..+...+++++.... -+.++|
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~-~i~--~v~TG~~--C-H~da~m~~~ai~~l~~~~~~~Dll~i 102 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGE-PII--GVETGKG--C-HLDASMNLEAIEELVLDFPDLDLLFI 102 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCC-eeE--EeccCCc--c-CCcHHHHHHHHHHHhhcCCcCCEEEE
Confidence 35678888887 999999985332 122233331011 111 3334433 2 467788888888876543 388999
Q ss_pred ecCH
Q 020874 258 EDST 261 (320)
Q Consensus 258 GDs~ 261 (320)
...-
T Consensus 103 Es~G 106 (202)
T COG0378 103 ESVG 106 (202)
T ss_pred ecCc
Confidence 7766
No 448
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=25.49 E-value=83 Score=24.91 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhc
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLL 214 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~ 214 (320)
+.++.++=+.|++.|+.+.++.+.....+..+++.++
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 88 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYG 88 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcC
Confidence 3667788888999999999999988887777877765
No 449
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=25.38 E-value=4e+02 Score=22.16 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHcCCCCCcEEEEec--CHhhHHHHHHc-CCeEEEEcCCCC
Q 020874 235 PDPAIYTLAASTLGVDPSSCVVVED--STIGLAAAKAA-GMKCIVTKSSYT 282 (320)
Q Consensus 235 P~~~~~~~~~~~~g~~~~~~v~VGD--s~~Di~~A~~a-G~~~v~v~~g~~ 282 (320)
++.+.+..+.+..++ .++..|+ +..|+..+.+. |+..|++.++.-
T Consensus 170 ~~~~~~~~i~~~~~i---pvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l 217 (231)
T cd02801 170 ADWDYIAEIKEAVSI---PVIANGDIFSLEDALRCLEQTGVDGVMIGRGAL 217 (231)
T ss_pred CCHHHHHHHHhCCCC---eEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhH
Confidence 345555555554333 4667776 45788888887 899999876643
No 450
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=25.34 E-value=2.7e+02 Score=20.23 Aligned_cols=32 Identities=6% Similarity=-0.035 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHH
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDST-IGLAAAKA 269 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~-~Di~~A~~ 269 (320)
|...++++++.+ +..+.|.|||+. .|.+.-.+
T Consensus 51 K~~~i~~i~~~f--P~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 51 KRDNIERILRDF--PERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHHHC--CCCcEEEEeeCCCcCHHHHHH
Confidence 455566666544 345788999888 67765444
No 451
>PLN02151 trehalose-phosphatase
Probab=25.19 E-value=1.2e+02 Score=27.83 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVS 211 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~ 211 (320)
..+.|++.++|+.|.+ +.+++|+|+.+...+...+.
T Consensus 119 A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 119 AFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred ccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHHcC
Confidence 4677999999999995 57999999999888877764
No 452
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=25.17 E-value=4.8e+02 Score=23.06 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCeEEEEcCCchHH-----HHHHHHHhcCcccccceeE-EeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 183 KLIDQALEKGVKVAVCSTSNEKA-----VTAIVSFLLGPERAEKIQI-FAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 183 e~l~~L~~~G~~i~lvT~~~~~~-----~~~~l~~~~~~~~~~~~~i-~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
-+++.|++.+++|.-+|=.-... .+..-.+..+..+|+...+ +.+......-|.++.|...++.+|++..+.++
T Consensus 11 ~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n~d~vV 90 (286)
T KOG1529|consen 11 WVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDNGDHVV 90 (286)
T ss_pred HHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCCCCeEE
Confidence 34455566777777776332221 1122222233344443222 12222344567789999999999999976666
Q ss_pred EecCH-hhHH-------HHHHcCCeEEEEcCC
Q 020874 257 VEDST-IGLA-------AAKAAGMKCIVTKSS 280 (320)
Q Consensus 257 VGDs~-~Di~-------~A~~aG~~~v~v~~g 280 (320)
|=|.. -.+. +.+..|...|.+..|
T Consensus 91 iYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~G 122 (286)
T KOG1529|consen 91 IYDRGDGGMFSASRVWWTFRVFGHTKVSLLNG 122 (286)
T ss_pred EEcCCCcceeehhhHHHHHHHhCccEEEEecC
Confidence 65542 2222 344568888886555
No 453
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=25.16 E-value=3.4e+02 Score=21.32 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=15.0
Q ss_pred CCeEEEEcCCchHHHHHHHHHh
Q 020874 192 GVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 192 G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
+.++.+++|.+.......+..+
T Consensus 49 ~~~i~~~~~~D~~~~~~~~~~~ 70 (158)
T cd05015 49 GLRLHFVSNVDPDDLAELLKKL 70 (158)
T ss_pred CceEEEEeCCCHHHHHHHHHhC
Confidence 5667777777776666666654
No 454
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=25.11 E-value=5e+02 Score=23.27 Aligned_cols=51 Identities=8% Similarity=0.104 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHcCCCCCcEEEEecCH--hhHHHHHH-cCCeEEEEcCCCCCcc
Q 020874 232 RKKPDPAIYTLAASTLGVDPSSCVVVEDST--IGLAAAKA-AGMKCIVTKSSYTAEE 285 (320)
Q Consensus 232 ~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~--~Di~~A~~-aG~~~v~v~~g~~~~~ 285 (320)
.++++-+.+..+.+..+++ ++..||=. .|+..+.+ .|+..|++.++.-...
T Consensus 178 ~G~a~~~~i~~ik~~~~iP---VI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP 231 (321)
T PRK10415 178 NGEAEYDSIRAVKQKVSIP---VIANGDITDPLKARAVLDYTGADALMIGRAAQGRP 231 (321)
T ss_pred CCCcChHHHHHHHHhcCCc---EEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCC
Confidence 4556777788887776653 88888854 68888776 6999999987754433
No 455
>PLN02580 trehalose-phosphatase
Probab=25.01 E-value=1.2e+02 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=31.6
Q ss_pred CCCChhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH
Q 020874 175 LPLRPGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (320)
Q Consensus 175 ~~~~pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~ 212 (320)
..+.|++.++|+.|.+. .+++|+|+.+...+...+..
T Consensus 140 A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~ 176 (384)
T PLN02580 140 ALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGL 176 (384)
T ss_pred ccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCC
Confidence 56679999999999988 58999999999888777753
No 456
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.99 E-value=1.1e+02 Score=19.68 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHcCCeEEEEcC
Q 020874 179 PGVAKLIDQALEKGVKVAVCST 200 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~ 200 (320)
|+-.+-|+.|.+.|++|.|.+-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 5567889999999999999873
No 457
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=24.38 E-value=1.3e+02 Score=25.41 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHH
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIV 210 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l 210 (320)
+.++|..|++. +.|+++++++-.-+..-+
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl 29 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQL 29 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHH
Confidence 46889999886 999999998765444433
No 458
>PRK06801 hypothetical protein; Provisional
Probab=24.36 E-value=5e+02 Score=22.97 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCC---CHHHHHHHHHHcCCCCCcEE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKP---DPAIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP---~~~~~~~~~~~~g~~~~~~v 255 (320)
.+.++|+..+++|+-|+-..-.+...+..+++..--. ... .|+...... ...+ -..+...++++..++ =++
T Consensus 5 ~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~-~~P--vIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp--V~l 79 (286)
T PRK06801 5 SLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQE-RSP--FIINIAEVHFKYISLESLVEAVKFEAARHDIP--VVL 79 (286)
T ss_pred cHHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHH-CCC--EEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC--EEE
Confidence 3678899999999999998878888888888776211 122 333222111 1111 223444555556553 123
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
+. |.....+..|.++|+..|++.....+
T Consensus 80 HlDH~~~~e~i~~Ai~~GftSVm~D~S~l~ 109 (286)
T PRK06801 80 NLDHGLHFEAVVRALRLGFSSVMFDGSTLE 109 (286)
T ss_pred ECCCCCCHHHHHHHHHhCCcEEEEcCCCCC
Confidence 33 33346788888899999998654433
No 459
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=24.30 E-value=4.2e+02 Score=22.05 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHH-cCCeEEEEcCCchHHHHHHHHHhcCcccccc-eeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 179 PGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFLLGPERAEK-IQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 179 pg~~e~l~~L~~-~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~-~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
....++++.+++ .|+.+..-++ +...+.. +...| .++... ..-+++.......+....+..+.+..+++ ++.
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~-t~ee~~~-a~~~G-~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iP---via 178 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS-TLEEGLA-AQKLG-FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCP---VIA 178 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC-CHHHHHH-HHHcC-CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCC---EEE
Confidence 356788899988 7777665444 3344433 33332 222210 00011111112334456677776666542 454
Q ss_pred Eec--CHhhHHHHHHcCCeEEEEcC
Q 020874 257 VED--STIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 257 VGD--s~~Di~~A~~aG~~~v~v~~ 279 (320)
.|- +..|+..+.++|...|++..
T Consensus 179 ~GGI~t~~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 179 EGRINTPEQAKKALELGAHAVVVGG 203 (221)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEch
Confidence 442 34799999999999998864
No 460
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=24.00 E-value=76 Score=26.81 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCChhHH-HHHHHHHHcCCeEEEEcCCchH-----HHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCC
Q 020874 176 PLRPGVA-KLIDQALEKGVKVAVCSTSNEK-----AVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGV 249 (320)
Q Consensus 176 ~~~pg~~-e~l~~L~~~G~~i~lvT~~~~~-----~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~ 249 (320)
.+.|++. ++.+.+++.|++..|+-..... .+...++.+|..-.+. ..+|+-+ +.++ ..+...++++|-
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P--~~~CsL~-~~~~---p~i~~F~~~fGk 132 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFP--KPFCSLE-ENGN---PQIDEFAEYFGK 132 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecC--ccccccC-CCCC---hhHHHHHHHhCC
Confidence 4667765 7778888899999999877666 7777888776655555 4555533 1233 445666777886
Q ss_pred CCCcEEEEecC-HhhHHHHHHcCCe
Q 020874 250 DPSSCVVVEDS-TIGLAAAKAAGMK 273 (320)
Q Consensus 250 ~~~~~v~VGDs-~~Di~~A~~aG~~ 273 (320)
+.=+ |.|.|+ ..|++--+.+-+.
T Consensus 133 P~~e-i~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 133 PKVE-IEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred ceEE-EEecCCcEEEEEEEecCCCc
Confidence 5434 334443 3566555555443
No 461
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=98 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHcCCeEEEEcCCchH
Q 020874 177 LRPGVAKLIDQALEKGVKVAVCSTSNEK 204 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~lvT~~~~~ 204 (320)
..+++.++++.|+++|+++.+=||++-.
T Consensus 84 ~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 84 LQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred CcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 4569999999999999999999987643
No 462
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=23.82 E-value=2e+02 Score=24.58 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=44.8
Q ss_pred HHHHHHHcCC-eEEEEcCCchHHHHHHHHHh-cCcccccceeEEeCCCCCCCCCCH-----H-HHHHHHHHcCCCCCcEE
Q 020874 184 LIDQALEKGV-KVAVCSTSNEKAVTAIVSFL-LGPERAEKIQIFAGDVVPRKKPDP-----A-IYTLAASTLGVDPSSCV 255 (320)
Q Consensus 184 ~l~~L~~~G~-~i~lvT~~~~~~~~~~l~~~-~~~~~~~~~~i~~~d~~~~~KP~~-----~-~~~~~~~~~g~~~~~~v 255 (320)
+++.+.+++. .+++-++.....+-..|... .....+....++-.|+++...|+. . +-+.++...++.++++.
T Consensus 20 i~~~i~~~~~~~l~lsgG~tp~~~y~~L~~~~~~~~~w~~v~~f~~DEv~~~~~~~~~s~~~~~~~~l~~~~~i~~~~~~ 99 (239)
T PRK12358 20 LLGYMSKTKRVNLAITAGSTPKGMYEYLITLVKGKAWYDNVHYYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKEENIH 99 (239)
T ss_pred HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHhcCCCHHHcEEEeccccCCCCccccccHHHHHHHHhcCcCCCCHHHee
Confidence 3444555655 44444444444444444332 122224555778888864423221 1 22233344566666665
Q ss_pred EEe-cCHhhHHHHHH-c-CCeEEEEcCC
Q 020874 256 VVE-DSTIGLAAAKA-A-GMKCIVTKSS 280 (320)
Q Consensus 256 ~VG-Ds~~Di~~A~~-a-G~~~v~v~~g 280 (320)
.+. +.....+.... . |+..+++.-|
T Consensus 100 ~~~~~~~~~y~~~i~~~~~~Dl~lLG~G 127 (239)
T PRK12358 100 KLTIDNYREHDQKLARDGGLDLVVLGLG 127 (239)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 554 32333333222 2 5666666544
No 463
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=23.81 E-value=4.5e+02 Score=22.73 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHH-----HHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHHc---CCC
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKA-----VTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTL---GVD 250 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~-----~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~---g~~ 250 (320)
.+-..+++.+...++.+.-=|++.... +-++.+++++.++.. --+.+|. ..--|++.-...+++.+ |+.
T Consensus 49 ~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iK--lEVi~d~-~~Llpd~~~tv~aa~~L~~~Gf~ 125 (248)
T cd04728 49 PGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIK--LEVIGDD-KTLLPDPIETLKAAEILVKEGFT 125 (248)
T ss_pred CCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEE--EEEecCc-cccccCHHHHHHHHHHHHHCCCE
Confidence 345566777776677665555443221 233445555555554 2233443 44568888888888888 774
Q ss_pred CCcEE-EEecCHhhHHHHHHcCCeEEEE
Q 020874 251 PSSCV-VVEDSTIGLAAAKAAGMKCIVT 277 (320)
Q Consensus 251 ~~~~v-~VGDs~~Di~~A~~aG~~~v~v 277 (320)
++ |.-|++.-.+...++|+..|+.
T Consensus 126 ---vlpyc~dd~~~ar~l~~~G~~~vmP 150 (248)
T cd04728 126 ---VLPYCTDDPVLAKRLEDAGCAAVMP 150 (248)
T ss_pred ---EEEEeCCCHHHHHHHHHcCCCEeCC
Confidence 66 8899999999999999999853
No 464
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=23.58 E-value=5.2e+02 Score=22.87 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CC-CC---CHHHHHHHHHHcCCCCCcE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RK-KP---DPAIYTLAASTLGVDPSSC 254 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~-KP---~~~~~~~~~~~~g~~~~~~ 254 (320)
-+.++|+..+++++-|+-..-.+...+..+++..- ..... .|+...... .. -+ -..+.+.++++...+-.=+
T Consensus 5 ~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe-~~~sP--vIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~ 81 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAE-EEKSP--VILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVA 81 (285)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHH-HHCCC--EEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEE
Confidence 36788999999999999888778888888887752 11222 333222111 11 11 1234455555554211123
Q ss_pred EEE--ecCHhhHHHHHHcCCeEEEEcCCCCC
Q 020874 255 VVV--EDSTIGLAAAKAAGMKCIVTKSSYTA 283 (320)
Q Consensus 255 v~V--GDs~~Di~~A~~aG~~~v~v~~g~~~ 283 (320)
++. |.+..++..|.++|+.+||+.....+
T Consensus 82 lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp 112 (285)
T PRK07709 82 IHLDHGSSFEKCKEAIDAGFTSVMIDASHHP 112 (285)
T ss_pred EECCCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 444 44557899999999999998754433
No 465
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.58 E-value=2.6e+02 Score=24.41 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCeEEEEcCCCC
Q 020874 236 DPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAA---GMKCIVTKSSYT 282 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~a---G~~~v~v~~g~~ 282 (320)
....+...++.+|++......|+|...++..+.+. ....|.+.+|-.
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g 73 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLG 73 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 35677788889999988888999999888777443 346666665544
No 466
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=23.50 E-value=1.3e+02 Score=25.80 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHH
Q 020874 179 PGVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSF 212 (320)
Q Consensus 179 pg~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~ 212 (320)
.-+.|.+.+|+..|.++.+||++-...-.+.|++
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~ 68 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQ 68 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhhhHHHhhh
Confidence 3456788899999999999999876665555544
No 467
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.44 E-value=48 Score=23.02 Aligned_cols=16 Identities=56% Similarity=0.731 Sum_probs=13.9
Q ss_pred eEEEEeCCCccccCCc
Q 020874 78 SALLFDCDGVLVDTEK 93 (320)
Q Consensus 78 k~viFDlDGTL~d~~~ 93 (320)
-.|+.+-|||.+|++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4689999999998875
No 468
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=23.41 E-value=46 Score=27.32 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=12.5
Q ss_pred eEEEEeCCCccccCC
Q 020874 78 SALLFDCDGVLVDTE 92 (320)
Q Consensus 78 k~viFDlDGTL~d~~ 92 (320)
..|-||+|||++-.-
T Consensus 59 ~~v~~D~~GT~m~iP 73 (271)
T PF06901_consen 59 HTVTFDFQGTKMVIP 73 (271)
T ss_pred eeEEEeccceEEEee
Confidence 589999999998643
No 469
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=1e+02 Score=21.00 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 020874 230 VPRKKPDPAIYTLAASTLGVDPSSCVVVEDSTIGLAAAKAAGMK 273 (320)
Q Consensus 230 ~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~Di~~A~~aG~~ 273 (320)
++..-|-...+..+++++.+++.....|-+..-++..|+.+|--
T Consensus 33 vpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnv 76 (94)
T KOG3483|consen 33 VPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV 76 (94)
T ss_pred CCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccce
Confidence 46677888999999999999987777776666677788888743
No 470
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.28 E-value=1.1e+02 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.0
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCchHH
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNEKA 205 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~~~ 205 (320)
.+.+.++++.++++|.+++.+|+.....
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 4778999999999999999999876543
No 471
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=23.28 E-value=5.8e+02 Score=23.37 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCChhHHHHHHHHHHcCCeEEEE--cCCchHHHHHHHHHhcCcccccceeEEeCC-------------------------
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVC--STSNEKAVTAIVSFLLGPERAEKIQIFAGD------------------------- 228 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lv--T~~~~~~~~~~l~~~~~~~~~~~~~i~~~d------------------------- 228 (320)
-+.+...+..+.|.+.|..+.++ ++++...+...++++. ..+....++.+.
T Consensus 104 g~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik--~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpG 181 (352)
T PF00478_consen 104 GTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIK--KKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPG 181 (352)
T ss_dssp ESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHH--HHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSS
T ss_pred cCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHH--HhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCC
Confidence 34556677777777777766665 3455555555454441 112112333221
Q ss_pred -------CCCCCCCCHHHHHHHHHHcCCCCCcEEEEecCH----hhHHHHHHcCCeEEEEcCC
Q 020874 229 -------VVPRKKPDPAIYTLAASTLGVDPSSCVVVEDST----IGLAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 229 -------~~~~~KP~~~~~~~~~~~~g~~~~~~v~VGDs~----~Di~~A~~aG~~~v~v~~g 280 (320)
..+.+.|.-..+..+.+...-. .+-.|.|+- -|+.-|..+|..+||+..-
T Consensus 182 siCtTr~v~GvG~PQ~tAv~~~a~~a~~~--~v~iIADGGi~~sGDi~KAla~GAd~VMlG~l 242 (352)
T PF00478_consen 182 SICTTREVTGVGVPQLTAVYECAEAARDY--GVPIIADGGIRTSGDIVKALAAGADAVMLGSL 242 (352)
T ss_dssp TTBHHHHHHSBSCTHHHHHHHHHHHHHCT--TSEEEEESS-SSHHHHHHHHHTT-SEEEESTT
T ss_pred cccccccccccCCcHHHHHHHHHHHhhhc--cCceeecCCcCcccceeeeeeecccceeechh
Confidence 1134667666555544432211 356777774 5999999999999998654
No 472
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.16 E-value=5.4e+02 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHcCCe-EEEEcCC
Q 020874 178 RPGVAKLIDQALEKGVK-VAVCSTS 201 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~-i~lvT~~ 201 (320)
+.|+..+.+.|.+.|++ ++++++.
T Consensus 160 ~~~~~~a~~~L~~~G~~~i~~i~~~ 184 (333)
T COG1609 160 FAGAYLATEHLIELGHRRIAFIGGP 184 (333)
T ss_pred HHHHHHHHHHHHHCCCceEEEEeCC
Confidence 46678888999888765 8888775
No 473
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=23.12 E-value=88 Score=27.15 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHcCCeEEEEcCCch-HHHHHHHHH
Q 020874 176 PLRPGVAKLIDQALEKGVKVAVCSTSNE-KAVTAIVSF 212 (320)
Q Consensus 176 ~~~pg~~e~l~~L~~~G~~i~lvT~~~~-~~~~~~l~~ 212 (320)
.-||...++++.|+++|+++.+..+... ++-...++.
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~ 100 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYIREWWAEVVKK 100 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhHHHHHHHHHHH
Confidence 3479999999999999999999876543 333344444
No 474
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=22.87 E-value=12 Score=22.64 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCeEEEEcCCchHHHHHHHHHh
Q 020874 183 KLIDQALEKGVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 183 e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
|+.++|++.|...+-+|...+..-+..|..+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 4567788889999999998888777777665
No 475
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.86 E-value=6.2e+02 Score=23.65 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHH-----cCCeEEEEcCC---------chHHHHHHHHHhcCcc---cccceeEEeCCCCCCCCCCHHHHH
Q 020874 179 PGVAKLIDQALE-----KGVKVAVCSTS---------NEKAVTAIVSFLLGPE---RAEKIQIFAGDVVPRKKPDPAIYT 241 (320)
Q Consensus 179 pg~~e~l~~L~~-----~G~~i~lvT~~---------~~~~~~~~l~~~~~~~---~~~~~~i~~~d~~~~~KP~~~~~~ 241 (320)
+++...++++++ .|.++..+... .....+.+++++.... -.....++.+-. ..-.+-+-++
T Consensus 98 dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~--~~~~d~~el~ 175 (428)
T cd01965 98 DDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFP--LTPGDVREIK 175 (428)
T ss_pred CCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCC--CCccCHHHHH
Confidence 456666677764 47777777431 1223444444442211 111123333222 1122578888
Q ss_pred HHHHHcCCCCCcEEEE------------------ecCHhhHHHHHHcCCeEEEEc
Q 020874 242 LAASTLGVDPSSCVVV------------------EDSTIGLAAAKAAGMKCIVTK 278 (320)
Q Consensus 242 ~~~~~~g~~~~~~v~V------------------GDs~~Di~~A~~aG~~~v~v~ 278 (320)
++++.+|+++.-+.-. |.+..|++.+.++.+..+.-.
T Consensus 176 ~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~ 230 (428)
T cd01965 176 RILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNAKATIALGE 230 (428)
T ss_pred HHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccCcEEEEECh
Confidence 9999999876433322 456689998888887666543
No 476
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=22.86 E-value=84 Score=27.33 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcCCch
Q 020874 178 RPGVAKLIDQALEKGVKVAVCSTSNE 203 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~~~~ 203 (320)
++.+.++++.+++.|+++++.||+..
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~~ 123 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGFL 123 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 57888999999999999999999853
No 477
>COG3742 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.76 E-value=3.5e+02 Score=20.65 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHH-cCCeEEEEcCCchHHHHHHHHHhcCcc-cccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEE
Q 020874 179 PGVAKLIDQALE-KGVKVAVCSTSNEKAVTAIVSFLLGPE-RAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVV 256 (320)
Q Consensus 179 pg~~e~l~~L~~-~G~~i~lvT~~~~~~~~~~l~~~~~~~-~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~ 256 (320)
|.+.++++.|.. .+..+..+|............++|-.. +. -+-.-.+.|.++|.++.-. ..+|
T Consensus 51 p~a~~~vd~~l~~~~~~v~~i~~~~~~~A~~A~~rfGKg~~Hp------------A~LN~GDCfsYA~A~~~~~--pLL~ 116 (131)
T COG3742 51 PEARRLVDLLLSEAGAQVVAVTADQARAALRAYRRFGKGRGHP------------AGLNFGDCFSYALAKLSGQ--PLLY 116 (131)
T ss_pred cHHHHHHHHHHHhcCCeEEeecHHHHHHHHHHHHHhCcCCCCc------------ccccchhHHHHHHHHhcCC--ceEe
Confidence 567777766654 589999998766555555555553211 11 1112256788888876544 4899
Q ss_pred EecCH--hhHHHH
Q 020874 257 VEDST--IGLAAA 267 (320)
Q Consensus 257 VGDs~--~Di~~A 267 (320)
.||.. +|+..+
T Consensus 117 KGnDF~~TDi~~a 129 (131)
T COG3742 117 KGNDFSHTDIRAA 129 (131)
T ss_pred ecCCccccchHhh
Confidence 99987 687765
No 478
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.74 E-value=5.3e+02 Score=22.70 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCCCH---HHHHHHHHHcCCCCCcEE
Q 020874 180 GVAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKPDP---AIYTLAASTLGVDPSSCV 255 (320)
Q Consensus 180 g~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP~~---~~~~~~~~~~g~~~~~~v 255 (320)
-+.++|+..++.|+-|+-..-.+...++.+++..--. .-. .|+...... ...+.. .++..++++..++ =++
T Consensus 5 ~~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~-~~P--vii~~~~~~~~~~~~~~~~~~~~~~a~~~~vp--v~l 79 (281)
T PRK06806 5 QMKELLKKANQENYGVGAFSVANMEMVMGAIKAAEEL-NSP--IILQIAEVRLNHSPLHLIGPLMVAAAKQAKVP--VAV 79 (281)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHh-CCC--EEEEcCcchhccCChHHHHHHHHHHHHHCCCC--EEE
Confidence 3678899999999999998888888888888776211 122 333221111 112222 2444556666553 122
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCCCCc
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSYTAE 284 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~~~~ 284 (320)
+. |.+...+..|..+|+..|++.....+.
T Consensus 80 HlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~ 110 (281)
T PRK06806 80 HFDHGMTFEKIKEALEIGFTSVMFDGSHLPL 110 (281)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEEEcCCCCCH
Confidence 32 334467788888999999998655443
No 479
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.66 E-value=4.6e+02 Score=21.96 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCcEEEEec--CHhhHHH-HHHcCCeEEEEcC
Q 020874 233 KKPDPAIYTLAASTLGVDPSSCVVVED--STIGLAA-AKAAGMKCIVTKS 279 (320)
Q Consensus 233 ~KP~~~~~~~~~~~~g~~~~~~v~VGD--s~~Di~~-A~~aG~~~v~v~~ 279 (320)
.-++-+.++.+++..++ .+++.|+ +..|+.. ....|+..|++..
T Consensus 182 ~g~~~~~~~~i~~~~~i---pvia~GGi~s~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 182 KGYDLELIKTVSDAVSI---PVIALGGAGSLDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred CCCCHHHHHHHHhhCCC---CEEEECCCCCHHHHHHHHHHcCCCEEEEeh
Confidence 33677888888877654 4888884 4579999 8889999998764
No 480
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=22.64 E-value=1.6e+02 Score=23.84 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=24.3
Q ss_pred HcCCCCCcEEEEecCHhhHHHHHHc----CCeEEEEcCC
Q 020874 246 TLGVDPSSCVVVEDSTIGLAAAKAA----GMKCIVTKSS 280 (320)
Q Consensus 246 ~~g~~~~~~v~VGDs~~Di~~A~~a----G~~~v~v~~g 280 (320)
.+..+..++++||++..||..|.+. |-..+.+..|
T Consensus 60 S~ahDshniiviG~~~~dm~~A~n~l~~~gGG~vvv~~g 98 (171)
T PF13382_consen 60 SVAHDSHNIIVIGTNDEDMALAANRLIEMGGGIVVVDDG 98 (171)
T ss_dssp S--TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred EcccCCCCEEEEECCHHHHHHHHHHHHHhCCCEEEEECC
Confidence 3455788999999999999999874 6566666554
No 481
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.64 E-value=5.9e+02 Score=24.46 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHH---HcCCCCCcEEEEe--cCHhhHHHHHHcCCeEEEEcC
Q 020874 231 PRKKPDPAIYTLAAS---TLGVDPSSCVVVE--DSTIGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 231 ~~~KP~~~~~~~~~~---~~g~~~~~~v~VG--Ds~~Di~~A~~aG~~~v~v~~ 279 (320)
+.++|+-..+..+++ .+++ .++.=| .+..|+..|..+|..+|++..
T Consensus 310 ~~~~p~~~av~~~~~~~~~~~~---~via~ggi~~~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 310 GVGRPQFSAVLECAAAARELGA---HVWADGGVRHPRDVALALAAGASNVMIGS 360 (479)
T ss_pred CCchhHHHHHHHHHHHHHhcCC---cEEecCCCCCHHHHHHHHHcCCCeeeccH
Confidence 457788888887777 4443 234333 223699999999999999853
No 482
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.45 E-value=4.7e+02 Score=21.94 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=37.6
Q ss_pred HHHHHHHcCCeEEEEcCCchHHHHHHHHHh--cCcccccceeEEeCCCCCCCCCC-HHHHHHHHHHcCCCCCcEEEEec-
Q 020874 184 LIDQALEKGVKVAVCSTSNEKAVTAIVSFL--LGPERAEKIQIFAGDVVPRKKPD-PAIYTLAASTLGVDPSSCVVVED- 259 (320)
Q Consensus 184 ~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~--~~~~~~~~~~i~~~d~~~~~KP~-~~~~~~~~~~~g~~~~~~v~VGD- 259 (320)
+++.|.+.+ -+.|+.+.+......+.+.+ ++...+ .+- ..-|. .+.++.+.++++-.|+=+|-.|-
T Consensus 6 ~~~~l~~~~-vi~vir~~~~~~a~~~~~al~~~Gi~~i---Eit------~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV 75 (213)
T PRK06552 6 ILTKLKANG-VVAVVRGESKEEALKISLAVIKGGIKAI---EVT------YTNPFASEVIKELVELYKDDPEVLIGAGTV 75 (213)
T ss_pred HHHHHHHCC-EEEEEECCCHHHHHHHHHHHHHCCCCEE---EEE------CCCccHHHHHHHHHHHcCCCCCeEEeeeeC
Confidence 445555553 35555555555555555555 121111 111 11121 23455555544332332222222
Q ss_pred -CHhhHHHHHHcCCeEEE
Q 020874 260 -STIGLAAAKAAGMKCIV 276 (320)
Q Consensus 260 -s~~Di~~A~~aG~~~v~ 276 (320)
+..+++.|.++|..++.
T Consensus 76 ~~~~~~~~a~~aGA~Fiv 93 (213)
T PRK06552 76 LDAVTARLAILAGAQFIV 93 (213)
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 12466666677777666
No 483
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=22.43 E-value=4.4e+02 Score=21.92 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHc---CCeEEEEcCCchHHHHHHHHHh
Q 020874 179 PGVAKLIDQALEK---GVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 179 pg~~e~l~~L~~~---G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
+.+-++++.|+++ -.+.+++-+.+.-.+.-+.+.+
T Consensus 137 e~igk~I~~lR~KYR~alR~GiLDSapDlDvLLLAkEL 174 (221)
T COG1458 137 EVVGKIIRKLREKYREALRKGILDSAPDLDVLLLAKEL 174 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHh
Confidence 3344555555543 2445555555554444444443
No 484
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.25 E-value=5.3e+02 Score=22.55 Aligned_cols=42 Identities=10% Similarity=0.012 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCCCcEEEEec--CHhhHHHHHHcCCeEEEEcCCCC
Q 020874 238 AIYTLAASTLGVDPSSCVVVED--STIGLAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 238 ~~~~~~~~~~g~~~~~~v~VGD--s~~Di~~A~~aG~~~v~v~~g~~ 282 (320)
+.+..+.+..++ .++.+|+ +..|+..+..+|+..|++.++..
T Consensus 221 ~~i~~i~~~~~i---pii~~GGI~~~~da~~~l~~GAd~V~igra~l 264 (296)
T cd04740 221 RMVYQVYKAVEI---PIIGVGGIASGEDALEFLMAGASAVQVGTANF 264 (296)
T ss_pred HHHHHHHHhcCC---CEEEECCCCCHHHHHHHHHcCCCEEEEchhhh
Confidence 334444444443 4788886 45799999999999999876533
No 485
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.14 E-value=3.6e+02 Score=20.75 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=25.7
Q ss_pred EEeCCCCCC-CCCCHHHHHHHHHHcCCCCCcEEEEecCHh---hHHHHH----HcCCe-EEEEcCCCCCc
Q 020874 224 IFAGDVVPR-KKPDPAIYTLAASTLGVDPSSCVVVEDSTI---GLAAAK----AAGMK-CIVTKSSYTAE 284 (320)
Q Consensus 224 i~~~d~~~~-~KP~~~~~~~~~~~~g~~~~~~v~VGDs~~---Di~~A~----~aG~~-~v~v~~g~~~~ 284 (320)
++++..... ..+..+.++..+...|++.+.+++-..+.+ ++..+. ..|++ .+.|...++..
T Consensus 42 l~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~~H~~ 111 (155)
T PF02698_consen 42 LFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSPYHMR 111 (155)
T ss_dssp EEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--CCCHH
T ss_pred EECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCHHHHH
Confidence 444433332 567778888888777887666555443333 332222 23554 44455555443
No 486
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.11 E-value=2.1e+02 Score=25.86 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=42.8
Q ss_pred HHHHcCCCCCcEEEE-ecCH---hhHHHHHHcCCeEEEEcCCCCCcccc---cCCCeeccCCCC
Q 020874 243 AASTLGVDPSSCVVV-EDST---IGLAAAKAAGMKCIVTKSSYTAEEDF---LNADAVFDCIGD 299 (320)
Q Consensus 243 ~~~~~g~~~~~~v~V-GDs~---~Di~~A~~aG~~~v~v~~g~~~~~~~---~~a~~vi~~l~e 299 (320)
.+.+.|+.|.+.+.| |=+- -.++-|++.|++.+.+.++....++. -+||..++..+|
T Consensus 173 pLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d 236 (360)
T KOG0023|consen 173 PLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTED 236 (360)
T ss_pred hhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCC
Confidence 567889999776654 4332 58999999999999999887554443 378888888755
No 487
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.05 E-value=3.5e+02 Score=20.67 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=15.6
Q ss_pred HHHHHcCCCCCcEEEEecCHh---hHHHHHHcCC
Q 020874 242 LAASTLGVDPSSCVVVEDSTI---GLAAAKAAGM 272 (320)
Q Consensus 242 ~~~~~~g~~~~~~v~VGDs~~---Di~~A~~aG~ 272 (320)
.++++.++ .++++|-|..+ -...++..|.
T Consensus 88 ~~~~~~~~--~~i~lVTs~~H~~Ra~~~~~~~~~ 119 (150)
T cd06259 88 ELLRERGI--RSVLLVTSAYHMPRALLIFRKAGL 119 (150)
T ss_pred HHHHhcCC--CeEEEECCHHHHHHHHHHHHHcCC
Confidence 34444444 45666666662 4555555665
No 488
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=21.98 E-value=4.1e+02 Score=21.16 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHcCCCC--CcEEEEecCHh-hHH---HHHHcCCeEEEEcCCCCCc-ccccCCCeeccCCCC
Q 020874 236 DPAIYTLAASTLGVDP--SSCVVVEDSTI-GLA---AAKAAGMKCIVTKSSYTAE-EDFLNADAVFDCIGD 299 (320)
Q Consensus 236 ~~~~~~~~~~~~g~~~--~~~v~VGDs~~-Di~---~A~~aG~~~v~v~~g~~~~-~~~~~a~~vi~~l~e 299 (320)
-|..+.+++++++++. .++++||-|.. +.. +..+-|+....+.+..... +....||.+|.-...
T Consensus 19 Tp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 19 TPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSS
T ss_pred CHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeecc
Confidence 3677788888888654 68999999973 333 3334576655554433222 233679988766554
No 489
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.65 E-value=5.9e+02 Score=22.78 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=14.0
Q ss_pred HHHHHHcCCeEEEEcCCCC
Q 020874 264 LAAAKAAGMKCIVTKSSYT 282 (320)
Q Consensus 264 i~~A~~aG~~~v~v~~g~~ 282 (320)
..+|+++|.+++.+...+.
T Consensus 214 A~~A~e~~~Pf~v~aesyK 232 (301)
T COG1184 214 ALAARELRVPFYVVAESYK 232 (301)
T ss_pred HHHHHHhCCCEEEEeeeec
Confidence 5678889998888765443
No 490
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=21.61 E-value=9e+02 Score=25.92 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCC---eEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCCCCCCCHHHHHHHHHH-cC---CCCCcE
Q 020874 182 AKLIDQALEKGV---KVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVPRKKPDPAIYTLAAST-LG---VDPSSC 254 (320)
Q Consensus 182 ~e~l~~L~~~G~---~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~-~g---~~~~~~ 254 (320)
.+.|++.|..|+ .|+-+.+.+...++..-+.+++...+..+.- ++.+++. .-+.+|...-.. -. -+...+
T Consensus 481 ~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~k~vd~-~a~e~~~--~~~~~y~~~~~~~~~~~~~~~~kv 557 (1050)
T TIGR01369 481 PELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDT-CAAEFEA--QTPYLYSTYEGERDDVPFTDKKKV 557 (1050)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCeeEEEeecC-CCCcccC--CCCeeEecCCCCCCcccCCCCceE
Confidence 367888888875 4555667777777777777766654431111 1112111 111111111101 00 123478
Q ss_pred EEEecCHhh--------------HHHHHHcCCeEEEEcCC
Q 020874 255 VVVEDSTIG--------------LAAAKAAGMKCIVTKSS 280 (320)
Q Consensus 255 v~VGDs~~D--------------i~~A~~aG~~~v~v~~g 280 (320)
+++|-+++. +.++++.|+.+|+++..
T Consensus 558 lvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 558 LVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred EEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 899988764 78889999999998654
No 491
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=21.50 E-value=4.8e+02 Score=21.70 Aligned_cols=91 Identities=9% Similarity=0.049 Sum_probs=53.3
Q ss_pred hhHHHHHHHH-HHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC----CCCCCHHHHHHHHHHcCCCCCc
Q 020874 179 PGVAKLIDQA-LEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP----RKKPDPAIYTLAASTLGVDPSS 253 (320)
Q Consensus 179 pg~~e~l~~L-~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~----~~KP~~~~~~~~~~~~g~~~~~ 253 (320)
..+.++.+.- ++.+.-.+++|+..+.....++++.......++..++.-..-+ .-+=|-..+..+++.+. ..++
T Consensus 57 e~Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~e 135 (197)
T PF10307_consen 57 ENIVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEFDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEE 135 (197)
T ss_pred HHHHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCE
Confidence 3444444333 4456777889998875555555554222221111333222101 11123566777777777 7799
Q ss_pred EEEEecCHhhHHHHHHc
Q 020874 254 CVVVEDSTIGLAAAKAA 270 (320)
Q Consensus 254 ~v~VGDs~~Di~~A~~a 270 (320)
+-+.+|...-+++.+..
T Consensus 136 I~IYeDR~~hvk~Fr~F 152 (197)
T PF10307_consen 136 IRIYEDRPKHVKGFRDF 152 (197)
T ss_pred EEEEcCCHHHHHHHHHH
Confidence 99999999988888774
No 492
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=21.44 E-value=71 Score=23.15 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCcEEEE-ecCHhhHHHHHHcCCeEEEEcCCCCCccc
Q 020874 251 PSSCVVV-EDSTIGLAAAKAAGMKCIVTKSSYTAEED 286 (320)
Q Consensus 251 ~~~~v~V-GDs~~Di~~A~~aG~~~v~v~~g~~~~~~ 286 (320)
+..+|.+ ||+..=+..|..+|+.++.+.++....+.
T Consensus 40 ~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~~~~ 76 (105)
T PF07085_consen 40 PGDLVITPGDREDIQLAAIEAGIACIILTGGLEPSEE 76 (105)
T ss_dssp TTEEEEEETT-HHHHHHHCCTTECEEEEETT----HH
T ss_pred CCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCCCHH
Confidence 3677877 99988888888999999988876665543
No 493
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.34 E-value=2.2e+02 Score=21.23 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCeEEEEcCC
Q 020874 182 AKLIDQALEKGVKVAVCSTS 201 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~ 201 (320)
.++++...+.+..++++|..
T Consensus 40 e~~~~~a~~~~~d~V~iS~~ 59 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSL 59 (122)
T ss_pred HHHHHHHHHcCCCEEEEccc
Confidence 35555555555555555543
No 494
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=21.24 E-value=1.3e+02 Score=30.61 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHHHc-CCeEEEEcCCchHHHHHHHHHh
Q 020874 177 LRPGVAKLIDQALEK-GVKVAVCSTSNEKAVTAIVSFL 213 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~-G~~i~lvT~~~~~~~~~~l~~~ 213 (320)
+.+++.+.|+.|.+. |+.++++|+.+...++..+..+
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~ 552 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDL 552 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 567899999999994 9999999999988887776654
No 495
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=21.18 E-value=91 Score=24.53 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=18.7
Q ss_pred ChhHHHHHHHHHHcCCeEEEEcC
Q 020874 178 RPGVAKLIDQALEKGVKVAVCST 200 (320)
Q Consensus 178 ~pg~~e~l~~L~~~G~~i~lvT~ 200 (320)
.|.+.++++..++.|++++.|+-
T Consensus 90 v~sl~eLl~~a~e~GVk~~AC~m 112 (148)
T PF13686_consen 90 VPSLEELLEMAKELGVKFYACSM 112 (148)
T ss_dssp ---HHHHHHHHHHCCEEEEEEHH
T ss_pred CCCHHHHHHHHHHCCCEEEEehh
Confidence 37789999999999999999975
No 496
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=20.84 E-value=70 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCccccc
Q 020874 182 AKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAE 220 (320)
Q Consensus 182 ~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~ 220 (320)
-.+|..|++.|.+|.|.|--.. +..+|+.+.....+.
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~--mLDILeDyc~~R~y~ 513 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTR--MLDILEDYCMLRGYE 513 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHH--HHHHHHHHHHhcCce
Confidence 4588899999999999985432 445555543333343
No 497
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=20.78 E-value=8.8e+02 Score=25.47 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=15.8
Q ss_pred CCceEEEEeCCCccccCCc
Q 020874 75 VLPSALLFDCDGVLVDTEK 93 (320)
Q Consensus 75 ~~~k~viFDlDGTL~d~~~ 93 (320)
..++.|+||-=|||.....
T Consensus 369 g~v~vic~DKTGTLT~n~m 387 (902)
T PRK10517 369 GAMDILCTDKTGTLTQDKI 387 (902)
T ss_pred cCCCEEEecCCCccccceE
Confidence 5578999999999997553
No 498
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=20.65 E-value=5.2e+02 Score=21.81 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHh--cCcccccceeEEeCCCCCCCCCCHHHHHHHHHHcCCCCCcEEEEe
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFL--LGPERAEKIQIFAGDVVPRKKPDPAIYTLAASTLGVDPSSCVVVE 258 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~--~~~~~~~~~~i~~~d~~~~~KP~~~~~~~~~~~~g~~~~~~v~VG 258 (320)
+.++++.+++.|.++++.-|.... .+.+...+ ...++.-.+.+-.+.. ..+-.+..+.++.+--..-++..+.|.
T Consensus 103 ~~~~l~~ik~~G~~~gval~p~t~-~e~l~~~l~~~~vD~Vl~m~v~pG~~--gq~~~~~~~~ki~~~~~~~~~~~I~Vd 179 (228)
T PTZ00170 103 PKAVARKIREAGMKVGVAIKPKTP-VEVLFPLIDTDLVDMVLVMTVEPGFG--GQSFMHDMMPKVRELRKRYPHLNIQVD 179 (228)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCC-HHHHHHHHccchhhhHHhhhcccCCC--CcEecHHHHHHHHHHHHhcccCeEEEC
Confidence 678899999999999987665432 22222222 1112111001111111 112223344443332222223335554
Q ss_pred cCH--hhHHHHHHcCCeEEEEcC
Q 020874 259 DST--IGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 259 Ds~--~Di~~A~~aG~~~v~v~~ 279 (320)
=+. ..+..+.++|...+.+.+
T Consensus 180 GGI~~~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 180 GGINLETIDIAADAGANVIVAGS 202 (228)
T ss_pred CCCCHHHHHHHHHcCCCEEEEch
Confidence 444 688899999999887754
No 499
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.59 E-value=5.7e+02 Score=22.19 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHHcCCeEEE-EcCCch-HHHHHHHHHhcCcccccceeEEeC-CCCC--CCCC--CHHHHHHHHHHcCC
Q 020874 177 LRPGVAKLIDQALEKGVKVAV-CSTSNE-KAVTAIVSFLLGPERAEKIQIFAG-DVVP--RKKP--DPAIYTLAASTLGV 249 (320)
Q Consensus 177 ~~pg~~e~l~~L~~~G~~i~l-vT~~~~-~~~~~~l~~~~~~~~~~~~~i~~~-d~~~--~~KP--~~~~~~~~~~~~g~ 249 (320)
+++...++++.+++.|+..+. ++.... +.+..+.+.- ..+. .+++. ...+ ...| -.+.+..+.+..+
T Consensus 127 p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfI---Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~- 200 (258)
T PRK13111 127 PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFV---YYVSRAGVTGARSADAADLAELVARLKAHTD- 200 (258)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcE---EEEeCCCCCCcccCCCccHHHHHHHHHhcCC-
Confidence 347788999999999976665 776553 4444444432 2222 22211 1111 1222 2234444444223
Q ss_pred CCCcEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 020874 250 DPSSCVVVEDST---IGLAAAKAAGMKCIVTKS 279 (320)
Q Consensus 250 ~~~~~v~VGDs~---~Di~~A~~aG~~~v~v~~ 279 (320)
--++||=+. .|+..+... ...+.|..
T Consensus 201 ---~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 201 ---LPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred ---CcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 235566544 688887775 77777654
No 500
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=20.57 E-value=6.6e+02 Score=22.97 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCeEEEEcCCchHHHHHHHHHhcCcccccceeEEeCCCCC-CCCCC---HHHHHHHHHHcC-CCCCcEE
Q 020874 181 VAKLIDQALEKGVKVAVCSTSNEKAVTAIVSFLLGPERAEKIQIFAGDVVP-RKKPD---PAIYTLAASTLG-VDPSSCV 255 (320)
Q Consensus 181 ~~e~l~~L~~~G~~i~lvT~~~~~~~~~~l~~~~~~~~~~~~~i~~~d~~~-~~KP~---~~~~~~~~~~~g-~~~~~~v 255 (320)
+.++|+..++.|+-|+...-.+...+..+++..--. .-. .|+-..... ..-+. ..+...+++... ++ =++
T Consensus 4 ~k~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~-~sP--vIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VP--Val 78 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKT-DSP--VILQASRGARSYAGAPFLRHLILAAIEEYPHIP--VVM 78 (347)
T ss_pred HHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHh-CCC--EEEECCcchhhhCCHHHHHHHHHHHHHhCCCCc--EEE
Confidence 567888888999988888877888888888776211 121 233221111 11111 122333333332 32 134
Q ss_pred EE--ecCHhhHHHHHHcCCeEEEEcCCC
Q 020874 256 VV--EDSTIGLAAAKAAGMKCIVTKSSY 281 (320)
Q Consensus 256 ~V--GDs~~Di~~A~~aG~~~v~v~~g~ 281 (320)
+. |.+..++..|..+|+.+||+....
T Consensus 79 HLDHg~~~e~i~~Ai~~GFtSVMiDgS~ 106 (347)
T TIGR01521 79 HQDHGNSPATCQRAIQLGFTSVMMDGSL 106 (347)
T ss_pred ECCCCCCHHHHHHHHHcCCCEEeecCcC
Confidence 44 445578888889999999987544
Done!