RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 020875
(320 letters)
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 460 bits (1186), Expect = e-164
Identities = 163/302 (53%), Positives = 207/302 (68%), Gaps = 5/302 (1%)
Query: 3 KEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
FPLL G+ AT D A + A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct: 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNV 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q+++K V ++ +
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query: 183 IIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSS+ +PD+ HA V+ +P ELV D W FI TV QRGAAII+AR S
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query: 243 SALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQG 302
SA SAA++A +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+G
Sbjct: 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query: 303 TD 304
+
Sbjct: 297 LE 298
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 459 bits (1182), Expect = e-164
Identities = 162/304 (53%), Positives = 208/304 (68%), Gaps = 7/304 (2%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIP--PAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+IP A +AL GV ME+
Sbjct: 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query: 59 VDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALE 118
D AFPLL G+ A D + A ++A++VG PR GMERKD++ N I+ Q A++
Sbjct: 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query: 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRAL QI+ K VS
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 179 VKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
++ + +WGNHS + Y D +A ++ V++++ DDAW F+ TV +RGAAII A
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQID----GASVKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query: 239 RKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWT 298
R +SSA SAA++A DHI DWVLGT G W +MG+ SDGSY +P G+I+ FPVT NGE+
Sbjct: 237 RGVSSAASAANAAIDHIHDWVLGTA-GKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query: 299 IVQG 302
IVQG
Sbjct: 296 IVQG 299
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 445 bits (1146), Expect = e-158
Identities = 183/300 (61%), Positives = 223/300 (74%), Gaps = 1/300 (0%)
Query: 4 EPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
EP+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct: 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
PLLK V+AT A +++A++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct: 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ KL V DVKNVI
Sbjct: 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query: 184 IWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSS+QYPDVNHA V A E V E VKDD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct: 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query: 244 ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCRNGEWTIVQG 302
A+SAA + CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT ++ W IV+G
Sbjct: 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 444 bits (1143), Expect = e-157
Identities = 129/304 (42%), Positives = 176/304 (57%), Gaps = 6/304 (1%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
K+ V + V+GAAG I L+ +A G + G DQP+ L +L + +AL GV MEL D
Sbjct: 28 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELED 87
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ +PLL+ V D E V+ A+++G PR GMER ++ N I+ Q AL
Sbjct: 88 SLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
A+ N KVLVV NP NTNALI + AP IPAKN LTRLD NRA Q++ K V V
Sbjct: 148 ASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVS 207
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKARK 240
NV IWGNHS++Q PD +A ++ +PV+E++K WL EF TVQ+RG A+I+
Sbjct: 208 NVTIWGNHSTTQVPDFLNAKID----GRPVKEVIKRTKWLEEEFTITVQKRGGALIQKWG 263
Query: 241 LSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTC-RNGEWT 298
SSA S A S D I+ V TPEG W S GVY+ G+ Y + +++S P +G++
Sbjct: 264 RSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323
Query: 299 IVQG 302
+
Sbjct: 324 LATD 327
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 293 bits (753), Expect = 1e-98
Identities = 75/301 (24%), Positives = 121/301 (40%), Gaps = 19/301 (6%)
Query: 5 PVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFP 64
++ + GAAG IG + A L + + L P A L GV E+ F
Sbjct: 8 EEKLTIVGAAGMIGSNMAQTAAMM-RLTPN--LCL----YDPFAVGLEGVAEEIRHCGFE 60
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
L + T+D EA T V GG PRKEGM R+D++ N I ++ +
Sbjct: 61 GL-NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVII 184
V+++ NPA+ L+ ++ + +T L LD R ++++ ++ S V N
Sbjct: 120 KHVIIIFNPADITGLVTLIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLN---GEFITTVQQRGAAIIKARKL 241
+G H + A VN G P+ +L+ D N E V + GA IIK R
Sbjct: 179 YGGHGEQMAVFASTAKVN---G-TPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGR 234
Query: 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
SS S + + + IR + G W + Y + ++ ++G
Sbjct: 235 SSFQSPSYVSIEMIRAAMGGEA-FRWPAG-CYVNV-PGFEHIMMAMETTITKDGVKHSDI 291
Query: 302 G 302
Sbjct: 292 N 292
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 84.6 bits (210), Expect = 5e-19
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
++V V GAAG IG AL ++ + G++ L + DI P GV ++L +
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSE----LSLYDIAPVTP---GVAVDLSHIPTAV 53
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ DA A G ++ ++ G RK GM+R D+ + N I K + + P
Sbjct: 54 KIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKA 112
Query: 126 KVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKN 181
+ ++ NP NT A +LK+ A + +T LD R+ ++E Q +V
Sbjct: 113 CIGIITNPVNTTVAIAAEVLKK-AGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEV-E 170
Query: 182 VIIWGNHS 189
V + G HS
Sbjct: 171 VPVIGGHS 178
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 84.6 bits (210), Expect = 6e-19
Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 39/259 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
+V V GA+G IG L ++ P++ L + DI GV +L
Sbjct: 2 KVAVLGASGGIGQPLSLLLKN-------SPLVSRLTLYDIAHT----PGVAADLSHIETR 50
Query: 65 L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
+KG + + G ++ V+ G PRK GM R D+ + N +I +A QH P
Sbjct: 51 ATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CP 109
Query: 124 NCKVLVVANPANT----NALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDV 179
+ + +++NP N+ A + K+ I +T LD RA ++E + + V
Sbjct: 110 DAMICIISNPVNSTIPITAEVFKKHG-VYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 168
Query: 180 KNVIIWGNHSS-SQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKA 238
+V + G H+ + P ++ T + + L +Q+ G ++KA
Sbjct: 169 -SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG-----------RIQEAGTEVVKA 216
Query: 239 RK------LSSALSAASSA 251
+ LS A + A
Sbjct: 217 KAGAGSATLSMAYAGARFV 235
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 84.5 bits (210), Expect = 6e-19
Identities = 50/257 (19%), Positives = 96/257 (37%), Gaps = 40/257 (15%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M + +V V GA G G ++A V++ DIP G +++++
Sbjct: 4 MTIKRKKVSVIGA-GFTGATTAFLLA---QKELADVVLV---DIPQLENPTKGKALDMLE 56
Query: 61 AA-FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQ 119
A+ + T ++ V+ G RK GM R D+++ N I K+ + +
Sbjct: 57 ASPVQGFDANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAK 116
Query: 120 HAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ 167
H +PN ++V+ NP + + + R +GQ
Sbjct: 117 H-SPNAIIVVLTNPVDAMTYSVFKE------------AGFPKERVIGQSGVLDTARFRTF 163
Query: 168 ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITT 227
I+++LN+ V D+ ++ G H P V ++ P+ L+ + +
Sbjct: 164 IAQELNLSVKDITGFVL-GGHGDDMVPLVRYSYAGG----IPLETLIPKERLE--AIVER 216
Query: 228 VQQRGAAIIKARKLSSA 244
++ G I+ SA
Sbjct: 217 TRKGGGEIVGLLGNGSA 233
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 83.7 bits (208), Expect = 1e-18
Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 41/259 (15%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
++V V GA G +G + +A + V++ +DI G +++ +++
Sbjct: 1 MKVTVIGA-GNVGATVAECVA---RQDVAKEVVM--VDIKD--GMPQGKALDMRESSPIH 52
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
V T+ ++ ++ G PR GM R D+++KN I + +P+
Sbjct: 53 GFDTRVTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPD 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
++VVANP + + E + NR +G I+E+L
Sbjct: 112 STIIVVANPLDVMTYVAYEA------------SGFPTNRVMGMAGVLDTGRFRSFIAEEL 159
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
+V V DV+ +++ G H + P + TV PV +L+ D E + + G
Sbjct: 160 DVSVRDVQALLM-GGHGDTMVPLPRYTTVGG----IPVPQLIDDARI--EEIVERTKGAG 212
Query: 233 AAIIKARKLSSALSAASSA 251
I+ S+ + ++A
Sbjct: 213 GEIVDLMGTSAWYAPGAAA 231
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 82.9 bits (206), Expect = 2e-18
Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 36/203 (17%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + E ++ ++ G PRK M R D+++ N I + A + ++ PN V+
Sbjct: 71 IFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY-CPNAFVI 128
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ NP + KE + + N+ G +S L V+
Sbjct: 129 CITNPLDAMVYYFKEK------------SGIPANKVCGMSGVLDSARFRCNLSRALGVKP 176
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----G 232
SDV +++ G H P + T+ + + V+ + I + ++ G
Sbjct: 177 SDVSAIVV-GGHGDEMIPLTSSVTIGG----ILLSDFVEQG-KITHSQINEIIKKTAFGG 230
Query: 233 AAIIKARKLSSALSAASSACDHI 255
I++ K SA A +++ +
Sbjct: 231 GEIVELLKTGSAFYAPAASAVAM 253
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 82.6 bits (205), Expect = 3e-18
Identities = 50/262 (19%), Positives = 102/262 (38%), Gaps = 42/262 (16%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA--- 62
++V + GA+G++G A ++A + ++L + + L G++ ++ DA
Sbjct: 1 MKVTIIGASGRVGSATALLLA---KEPFMKDLVL--IGREHSINKLEGLREDIYDALAGT 55
Query: 63 -FPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHA 121
V + + + ++ ++ G PRKEGM R D+ N I A + +
Sbjct: 56 RSDA-NIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI- 113
Query: 122 APNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------IS 169
K+ V+ NP + ++ + N+ G I+
Sbjct: 114 CDT-KIFVITNPVDVMTYKALVD------------SKFERNQVFGLGTHLDSLRFKVAIA 160
Query: 170 EKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQ 229
+ V + +V+ II G H S P ++ ++ P+++ + E I V+
Sbjct: 161 KFFGVHIDEVRTRII-GEHGDSMVPLLSATSIGG----IPIQKFERFKELPIDEIIEDVK 215
Query: 230 QRGAAIIKARKLSSALSAASSA 251
+G II+ K S A++
Sbjct: 216 TKGEQIIR-LKGGSEFGPAAAI 236
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 82.2 bits (204), Expect = 4e-18
Identities = 54/259 (20%), Positives = 105/259 (40%), Gaps = 41/259 (15%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAA-FP 64
+++ V GA G +G +A + ++L LD+ G +++ ++
Sbjct: 1 MKITVIGA-GNVGATTAFRLA---EKQLARELVL--LDV--VEGIPQGKALDMYESGPVG 52
Query: 65 LLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPN 124
L V ++ +I ++ G PRK GM R+D++ KN I K + +H + N
Sbjct: 53 LFDTKVTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKN 111
Query: 125 CKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKL 172
++VV+NP + + + L R +G I+ +L
Sbjct: 112 PIIIVVSNPLDIMTHVAWVR------------SGLPKERVIGMAGVLDAARFRSFIAMEL 159
Query: 173 NVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRG 232
V + D+ ++ G H + P V + TV P+ +L+ + + + + G
Sbjct: 160 GVSMQDINACVL-GGHGDAMVPVVKYTTVAG----IPISDLLPAETI--DKLVERTRNGG 212
Query: 233 AAIIKARKLSSALSAASSA 251
A I++ K SA A +S+
Sbjct: 213 AEIVEHLKQGSAFYAPASS 231
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 82.2 bits (204), Expect = 5e-18
Identities = 40/200 (20%), Positives = 80/200 (40%), Gaps = 35/200 (17%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V T+ + ++ ++ G PRK GM R D++ N+ + + ++ +
Sbjct: 53 CPIEGVDFKVRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN 112
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
PN V+ + NP + +L++F + + N+ +G +
Sbjct: 113 -CPNAFVICITNPLDIMVNMLQKF------------SGVPDNKIVGMAGVLDSARFRTFL 159
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+++LNV V V+ ++ G H + P + V + +LVK+ L E + +
Sbjct: 160 ADELNVSVQQVQAYVM-GGHGDTMVPLTKMSNVAG----VSLEQLVKEG-KLKQERLDAI 213
Query: 229 QQR----GAAIIKARKLSSA 244
R G I+ K SA
Sbjct: 214 VSRTRSGGGEIVALLKTGSA 233
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 80.6 bits (200), Expect = 1e-17
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 32/208 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V V GAAG +G A IA + V+ +DIP + G +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIA---LRDIADEVVF--VDIPDKEDDTVGQAADTNHGI-AYD 55
Query: 67 KGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCK 126
E G ++ V+ G PR+ G R D+ N I + S+L++H +
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYI 114
Query: 127 VLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNV 174
L +NP + L E + +G +SE+ +
Sbjct: 115 SLTTSNPVDLLNRHLYEA------------GDRSREQVIGFGGRLDSARFRYVLSEEFDA 162
Query: 175 QVSDVKNVIIWGNHSSSQYPDVNHATVN 202
V +V+ I+ G H +Q P + +V+
Sbjct: 163 PVQNVEGTIL-GEHGDAQVPVFSKVSVD 189
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 80.6 bits (200), Expect = 2e-17
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 35/200 (17%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ + A G ++ ++ G PRK GM R D++ N+ + + + ++++
Sbjct: 55 SPVDGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY 114
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
AP V+ + NP + L++F + L ++ +G +
Sbjct: 115 -APEAFVICITNPLDAMVWALQKF------------SGLPAHKVVGMAGVLDSARFRYFL 161
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
SE+ NV V DV ++ G H S P ++TV P+ +LVK W + + + +
Sbjct: 162 SEEFNVSVEDVTVFVL-GGHGDSMVPLARYSTVAG----IPLPDLVKMG-WTSQDKLDKI 215
Query: 229 QQR----GAAIIKARKLSSA 244
QR GA I+ K SA
Sbjct: 216 IQRTRDGGAEIVGLLKTGSA 235
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 80.4 bits (199), Expect = 2e-17
Identities = 60/253 (23%), Positives = 108/253 (42%), Gaps = 31/253 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMELVDAAFP 64
+V + GAAG IG L ++ P++ LH+ D+ A GV ++
Sbjct: 10 KVAILGAAGGIGQPLAMLMKM-------NPLVSVLHLYDVVNA----PGVTADISHMDTG 58
Query: 65 L-LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
++G + A TG+++ ++ G PRK GM R D+ N I K + + P
Sbjct: 59 AVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CP 117
Query: 124 NCKVLVVANPANTNALILKEF---APSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
V +++NP N+ I E A + K + +T LD RA ++E L + DV
Sbjct: 118 RAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVD 177
Query: 181 NVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIKAR- 239
++ G+ + P ++ ++ ++ + L +Q G +++A+
Sbjct: 178 VPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDR-----------IQNGGTEVVEAKA 226
Query: 240 KLSSA-LSAASSA 251
SA LS A +A
Sbjct: 227 GAGSATLSMAYAA 239
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 80.3 bits (199), Expect = 2e-17
Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 33/195 (16%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + E G +I ++ G RK GM R+ ++ N + A ++ + A + V+
Sbjct: 56 ISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVV 113
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ NP + ++ + T R +G IS+KL V
Sbjct: 114 ITTNPVDAMTYVMYKK------------TGFPRERVIGFSGILDSARMAYYISQKLGVSF 161
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAII 236
V +++ G H +P ++V P+ L+ + E ++ GA I
Sbjct: 162 KSVNAIVL-GMHGQKMFPVPRLSSVGG----VPLEHLMSKEEI--EEVVSETVNAGAKIT 214
Query: 237 KARKLSSALSAASSA 251
+ R SS A+
Sbjct: 215 ELRGYSSNYGPAAGL 229
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 79.5 bits (197), Expect = 3e-17
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 32/207 (15%)
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V T+ ++ V+ G PRK GM R+D++ N I +A S
Sbjct: 50 SPIEGFDVRVTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL 109
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+PN +++V NP + + E + R +GQ I
Sbjct: 110 -SPNAVIIMVNNPLDAMTYLAAEV------------SGFPKERVIGQAGVLDAARYRTFI 156
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+ + V V DV+ +++ G H P + ++ PV E + D + +
Sbjct: 157 AMEAGVSVEDVQAMLM-GGHGDEMVPLPRFSCISG----IPVSEFIAPDRL--AQIVERT 209
Query: 229 QQRGAAIIKARKLSSALSAASSACDHI 255
++ G I+ K SA A ++A +
Sbjct: 210 RKGGGEIVNLLKTGSAYYAPAAATAQM 236
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 79.9 bits (198), Expect = 4e-17
Identities = 39/208 (18%), Positives = 79/208 (37%), Gaps = 40/208 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGME-----RKDVMSKNVSIYKAQASALEQHAAP 123
V A A TG + ++ G + G R D++ N I + ++++ P
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CP 124
Query: 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEK 171
++VV NP + ++ E + + N G +++
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA------------SGVPTNMICGMACMLDSGRFRRYVADA 172
Query: 172 LNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR 231
L+V DV+ +I G H P V + TVN P+++ +KD + + + + +
Sbjct: 173 LSVSPRDVQATVI-GTHGDCMVPLVRYITVNG----YPIQKFIKDG-VVTEKQLEEIAEH 226
Query: 232 ----GAAIIKARKLSSALSAASSACDHI 255
G I++ SA A +++ +
Sbjct: 227 TKVSGGEIVRFLGQGSAYYAPAASAVAM 254
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 79.1 bits (196), Expect = 6e-17
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 35/191 (18%)
Query: 70 VATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLV 129
V TD +G ++ ++ P + +R +++ N I + A ++++ PN V+
Sbjct: 61 VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY-CPNAFVIC 119
Query: 130 VANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVS 177
+ NP + ++ + L HN+ G I++ V S
Sbjct: 120 ITNPLDVMVSHFQKV------------SGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNAS 167
Query: 178 DVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR----GA 233
DV +I G H P + +V P+ +K + E I +
Sbjct: 168 DVSANVI-GGHGDGMVPATSSVSVGG----VPLSSFIKQG-LITQEQIDEIVCHTRIAWK 221
Query: 234 AIIKARKLSSA 244
+ K +A
Sbjct: 222 EVADNLKTGTA 232
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 76.0 bits (188), Expect = 7e-16
Identities = 52/253 (20%), Positives = 96/253 (37%), Gaps = 43/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
K+ +V++ G G +G + + + G Q + + +DI + G ++L +
Sbjct: 5 TDKDHQKVILVGD-GAVGSSYAYAMV---LQGIAQEIGI--VDI--FKDKTKGDAIDLSN 56
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
A P + ++ V+ G P+K G R D+++KN+ I K+ +
Sbjct: 57 AL-PFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS 115
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
N LV ANP + + L+ NR +G I
Sbjct: 116 -GFNGIFLVAANPVDILTYATWK------------LSGFPKNRVVGSGTSLDTARFRQSI 162
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
+E +NV V I+ G H +++P +HA + G + E VK + + + +
Sbjct: 163 AEMVNVDARSVHAYIM-GEHGDTEFPVWSHANI---GG-VTIAEWVKAHPEIKEDKLVKM 217
Query: 229 QQR----GAAIIK 237
+ IIK
Sbjct: 218 FEDVRDAAYEIIK 230
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 74.5 bits (184), Expect = 2e-15
Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 39/184 (21%)
Query: 77 EACTGVNIAVMVGGFPRKEGM-----ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVA 131
+ G ++ ++ GF + G R D++ N I ++++ PN ++VV
Sbjct: 68 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVT 126
Query: 132 NPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDV 179
NP + +L + + + N+ +G IS+KLNV DV
Sbjct: 127 NPVDVMVQLLHQH------------SGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174
Query: 180 KNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR---GAAII 236
I+ G H + + TV P++E + + ++ + + R A I
Sbjct: 175 NAHIV-GAHGNKMVLLKRYITVGG----IPLQEFINNK-LISDAELEAIFDRTVNTALEI 228
Query: 237 KARK 240
Sbjct: 229 VNLH 232
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 74.1 bits (183), Expect = 3e-15
Identities = 53/253 (20%), Positives = 90/253 (35%), Gaps = 42/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M K +V + GA G +G + + G +++ +D+ E G M+L
Sbjct: 1 MNKHVNKVALIGA-GFVGSSYAFALI---NQGITDELVV--IDV--NKEKAMGDVMDLNH 52
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
+ V + E C +I + G +K G R +++ KN+ I+K S +
Sbjct: 53 GKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS 112
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+ LV NP + + + L R +G +
Sbjct: 113 -GFDGIFLVATNPVDILTYATWK------------FSGLPKERVIGSGTTLDSARFRFML 159
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
SE +V II G H ++ P +HA V G PV ELV+ + E + +
Sbjct: 160 SEYFGAAPQNVCAHII-GEHGDTELPVWSHANV---GG-VPVSELVEKNDAYKQEELDQI 214
Query: 229 QQR----GAAIIK 237
II+
Sbjct: 215 VDDVKNAAYHIIE 227
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 72.9 bits (180), Expect = 8e-15
Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 43/248 (17%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
+++ + G G++G + + M G + ++L +D+ + G ++L+ P
Sbjct: 1 MKIGIVGL-GRVGSSTAFALL---MKGFAREMVL--IDV--DKKRAEGDALDLIHGT-PF 51
Query: 66 LKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNC 125
+ G ++ ++ G P+K G R ++ +N + K A + ++ AP+
Sbjct: 52 TRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDS 110
Query: 126 KVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLN 173
V+VV NP + + + +D + G I++
Sbjct: 111 IVIVVTNPVDVLTYFFLKE------------SGMDPRKVFGSGTVLDTARLRTLIAQHCG 158
Query: 174 VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQR-- 231
V +I G H S+ P + A + G P++ + + + + + ++
Sbjct: 159 FSPRSVHVYVI-GEHGDSEVPVWSGAMI---GG-IPLQNMCQVCQKCDSKILENFAEKTK 213
Query: 232 --GAAIIK 237
II+
Sbjct: 214 RAAYEIIE 221
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 71.0 bits (175), Expect = 3e-14
Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 42/253 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
RV+V GA G +G + V + G ++L +D G M+
Sbjct: 2 KNNGGARVVVIGA-GFVGASYVFALM---NQGIADEIVL--IDA--NESKAIGDAMDFNH 53
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
K V + C ++ V+ G +K G R D++ KN++I+++ ++
Sbjct: 54 GKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
LV NP + + + L H R +G +
Sbjct: 114 -GFQGLFLVATNPVDILTYATWK------------FSGLPHERVIGSGTILDTARFRFLL 160
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTV 228
E +V +V II G H ++ P + A + P+R+LV+ + + +
Sbjct: 161 GEYFSVAPQNVHAYII-GEHGDTELPVWSQAYI---GV-MPIRKLVESKGEEAQKDLERI 215
Query: 229 QQR----GAAIIK 237
II+
Sbjct: 216 FVNVRDAAYQIIE 228
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 69.1 bits (170), Expect = 1e-13
Identities = 59/254 (23%), Positives = 99/254 (38%), Gaps = 44/254 (17%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVD 60
M K +V + GA G +G + +A + T ++L +D+ E G M++
Sbjct: 3 MVKSRSKVAIIGA-GFVGASAAFTMA---LRQTANELVL--IDV--FKEKAIGEAMDINH 54
Query: 61 AAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQH 120
P + + ++ V+ G RK G R D+ KNV I K + ++
Sbjct: 55 GL-PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY 113
Query: 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------I 168
+ +LVV+NP + ++++ + L + +G +
Sbjct: 114 -YNHGVILVVSNPVDIITYMIQK------------WSGLPVGKVIGSGTVLDSIRFRYLL 160
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----E 223
SEKL V V +V II G H SQ P + + AG K + E + D +
Sbjct: 161 SEKLGVDVKNVHGYII-GEHGDSQLPLWSCTHI---AG-KNINEYIDDPKCNFTEEDKKK 215
Query: 224 FITTVQQRGAAIIK 237
V+ GA IIK
Sbjct: 216 IAEDVKTAGATIIK 229
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 69.1 bits (170), Expect = 2e-13
Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 37/187 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+ + D E C ++ V+ G +K G R +++ V+I KA L + APN +
Sbjct: 64 IDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYM 121
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
++ NP + + ++ LT L N+ G I+++ V V
Sbjct: 122 LITNPVDIATHVAQK------------LTGLPENQIFGSGTNLDSARLRFLIAQQTGVNV 169
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD--DAWLNGEFITTVQQR--- 231
+V I G H S+ P AT+ G P+ + L+ + + Q
Sbjct: 170 KNVHAYIA-GEHGDSEVPLWESATI---GG-VPMSDWTPLPGHDPLDADKREEIHQEVKN 224
Query: 232 -GAAIIK 237
II
Sbjct: 225 AAYKIIN 231
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 68.7 bits (169), Expect = 2e-13
Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 44/217 (20%)
Query: 41 MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
++D+ A A +++ A P V + G V+ G ++ G
Sbjct: 30 LVDLDRKLAQAHA-----EDILHAT-PFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R ++ +N ++ + + AP +LV NP + + L+
Sbjct: 84 TRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNPVDVMTQVAYA------------LS 130
Query: 158 RLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAA 205
L R +G ++E L V V ++ G H S+ + A V
Sbjct: 131 GLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVL-GEHGDSEVLVWSSAQV---G 186
Query: 206 GEKPVRELVKDDAWLNG-----EFITTVQQRGAAIIK 237
G P+ E + V++ II+
Sbjct: 187 G-VPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE 222
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 67.9 bits (167), Expect = 4e-13
Identities = 38/213 (17%), Positives = 79/213 (37%), Gaps = 38/213 (17%)
Query: 41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
++D+ + G ++L DA + C ++ V+ G P+K G R
Sbjct: 35 IVDV--VKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRL 91
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
D+++KN++I + + + LV ANP + + +
Sbjct: 92 DLVNKNLNILSSIVKPVVDS-GFDGIFLVAANPVDILTYATWK------------FSGFP 138
Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
R +G + ++ NV V I+ G H S++ + AT+ +
Sbjct: 139 KERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM-GEHGDSEFAAYSTATI---GT-R 193
Query: 209 PVRELVKDDAWLNGEFITTVQQR----GAAIIK 237
PVR++ K+ ++ + + ++ II
Sbjct: 194 PVRDVAKEQ-GVSDDDLAKLEDGVRNKAYDIIN 225
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 67.5 bits (166), Expect = 5e-13
Identities = 46/249 (18%), Positives = 91/249 (36%), Gaps = 48/249 (19%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+V++ D + ++ G ++EG R +++ +NV+I+K + ++ +P CK+L
Sbjct: 76 IVSSKD-YSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLL 133
Query: 129 VVANPANTNA-LILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQ 175
+V+NP + + K ++ NR +G + E+L V
Sbjct: 134 IVSNPVDILTYVAWK-------------ISGFPKNRVIGSGCNLDSARFRYLMGERLGVH 180
Query: 176 VSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNG-----EFITTVQQ 230
++ G H S P + V AG ++ L + V
Sbjct: 181 PLSCHGWVL-GEHGDSSVPVWSGVNV---AG-VSLKSLNPQLGTDADKEQWKDVHKQVVD 235
Query: 231 RGAAIIKARKLSS---ALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYS 287
+IK + +S LS A A +++ + G Y + + S
Sbjct: 236 SAYEVIKLKGYTSWAIGLSVADLAESIMKN------LRRVHPISTMIKGLYGIKEDVFLS 289
Query: 288 FP-VTCRNG 295
P + +NG
Sbjct: 290 VPCILGQNG 298
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 67.1 bits (165), Expect = 6e-13
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 33/176 (18%)
Query: 77 EACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANT 136
C ++ V+ G +K G R D++SKN+ I+K+ + + LV NP +
Sbjct: 70 SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATNPVDI 128
Query: 137 NALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVII 184
A + + L R +G +SE +V V II
Sbjct: 129 LAYATWK------------FSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176
Query: 185 WGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEF---ITTVQQRGAAIIK 237
G H ++ P +HA + AG +P++ L++ + + II+
Sbjct: 177 -GEHGDTELPVWSHANI---AG-QPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ 227
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 66.8 bits (164), Expect = 9e-13
Identities = 42/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 41 MLDI---PPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGM 97
++D AEA ++ AA P+ G + ++ G +K G
Sbjct: 30 LVDRDEDRAQAEA-----EDIAHAA-PVSHGTRVWHGGHSELADAQVVILTAGANQKPGE 83
Query: 98 ERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLT 157
R D++ KN I++ + + AP+ +LV +NP + + + AP I T
Sbjct: 84 SRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPVDLLTDLATQLAP--GQPVIGSGT 140
Query: 158 RLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD- 216
LD R +++ V + ++ G H S+ + A V AG PV + ++
Sbjct: 141 VLDSARFRHLMAQHAGVDGTHAHGYVL-GEHGDSEVLAWSSAMV---AG-MPVADFMQAQ 195
Query: 217 ----DAWLNGEFITTVQQRGAAIIK 237
+ + + + A+II+
Sbjct: 196 NLPWNEQVRAKIDEGTRNAAASIIE 220
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 65.8 bits (161), Expect = 2e-12
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 27/145 (18%)
Query: 69 VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVL 128
+V+ D G + V+ G ++EG R +++ +NV+I+K + +H +P+C
Sbjct: 78 IVSGKD-YSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135
Query: 129 VVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISEKLNVQV 176
+ + L+ L +R +G + E+L V
Sbjct: 136 LHPELGTDKNKQDWK------------LSGLPMHRIIGSGCNLDSARFRYLMGERLGVHS 183
Query: 177 SDVKNVIIWGNHSSSQYPDVNHATV 201
V +I G H S +
Sbjct: 184 CLVIGWVI-GQHGDSVPSVWSGMWD 207
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 65.7 bits (161), Expect = 2e-12
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 37/191 (19%)
Query: 41 MLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERK 100
+LD+ + +D L V + D + A + +
Sbjct: 44 LLDLSEGTKG------ATMDLEIFNLPNVEISKD-LSASAHSKVVIFTVN-SLGSSQSYL 95
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLD 160
DV+ NV +++A AL + + + +LV + P + + L+
Sbjct: 96 DVVQSNVDMFRALVPALGHY-SQHSVLLVASQPVEIMTYVTWK------------LSTFP 142
Query: 161 HNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEK 208
NR +G I+ L Q S + +I G + +
Sbjct: 143 ANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVI-GEQGEDKVLTWSGQEE---VVSH 198
Query: 209 PVRELVKDDAW 219
+ + + A
Sbjct: 199 TSQVQLSNRAM 209
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 64.1 bits (157), Expect = 6e-12
Identities = 53/247 (21%), Positives = 84/247 (34%), Gaps = 55/247 (22%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
+++ GA G++G + + L +DI A + G M+L AA
Sbjct: 1 MKLGFVGA-GRVGSTSAFTCL---LNLDVDEIAL--VDI--AEDLAVGEAMDLAHAA-AG 51
Query: 66 LKG---VVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAA 122
+ +V D G I V+ G RK GM R D+ KN I K A + ++ A
Sbjct: 52 IDKYPKIVGGAD-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-A 109
Query: 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQ------------ISE 170
P K+LVV NP + I+ + + N G +
Sbjct: 110 PESKILVVTNPMDVMTYIMWKE------------SGKPRNEVFGMGNQLDSQRLKERLYN 157
Query: 171 KLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQ 230
+++ I G H S + + A GE + D V+
Sbjct: 158 AGAR---NIRRAWIIGEHGDSMFVAKSLADF---DGEVDWEAVEND-----------VRF 200
Query: 231 RGAAIIK 237
A +IK
Sbjct: 201 VAAEVIK 207
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 57.1 bits (139), Expect = 2e-09
Identities = 27/216 (12%), Positives = 69/216 (31%), Gaps = 42/216 (19%)
Query: 41 MLDIPPA---AEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPR---- 93
+D A A+ ++ DA L + A ++ + G +
Sbjct: 31 FIDANEAKVKADQ-----IDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQD 85
Query: 94 KEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNI 153
+R + S+ ++ + L++ + ++V++NP + + +
Sbjct: 86 NPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNPVDVITALFQH---------- 134
Query: 154 TCLTRLDHNRALGQ------------ISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATV 201
+T ++ +G + E ++ V + G H +SQ+ + V
Sbjct: 135 --VTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNL-GEHGNSQFVAWSTVRV 191
Query: 202 NTAAGEKPVRELVKDDAWLNGEFITTVQQRGAAIIK 237
G +P+ L ++ G ++
Sbjct: 192 ---MG-QPIVTLADAGDIDLAAIEEEARKGGFTVLN 223
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 48.2 bits (114), Expect = 2e-06
Identities = 33/229 (14%), Positives = 81/229 (35%), Gaps = 37/229 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYA--LVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMEL 58
M+ + +++ G G G+A L+ ++ + V L+ D+ EA ++ +
Sbjct: 1 MSLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGT--VALY--DL--DFEAAQKNEV-I 52
Query: 59 VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
+ + A + +A + + I+++ G P + G+ + +
Sbjct: 53 GNHSGNGRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVG 112
Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ V I+ A A+ +A P V+ NP + +L + P I A
Sbjct: 113 PGGIIRGLRAVPIFAEIARAIRDYA-PESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHE 171
Query: 157 TRLDHN---RALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVN 202
+ + + D++ ++ NH + ++ ++
Sbjct: 172 VFGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTW-ITKASYRHID 219
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 42.8 bits (100), Expect = 1e-04
Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 43/258 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKMEL 58
M K+ +++ G G P I ++ ++ I L + D + ++
Sbjct: 24 MKKKSFSIVIAGG----GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDV 79
Query: 59 VDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS-- 104
ATTD EA T V+ + VG + P K G+ ++
Sbjct: 80 FIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPG 139
Query: 105 ------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPA-------- 150
+++ +E+++ P+ +L +NPA A + P+
Sbjct: 140 GIAYGMRSIGGVLEILDYMEKYS-PDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV 198
Query: 151 ---KNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGE 207
+ + L + + LN I + P + G
Sbjct: 199 GIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTS---IQDQEGNDLMPKLKEHVSQY--GY 253
Query: 208 KPVRELVKDDAWLNGEFI 225
P E +A N F
Sbjct: 254 IPKTEAEAVEASWNDTFA 271
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 40.8 bits (96), Expect = 3e-04
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
R+LVTGAAGQ+G + + + + + + PA V+ +L DA
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMA-----EILRLADLSPLDPAGPNEECVQCDLADAN--A 57
Query: 66 LKGVVATTDAV 76
+ +VA D +
Sbjct: 58 VNAMVAGCDGI 68
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 41.3 bits (96), Expect = 3e-04
Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 34/212 (16%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVI--LHMLDIPPAAEALNGVKM-- 56
M K +++ G G + P + G++ + + L ++DIP E L V
Sbjct: 4 MDK-RLKIATIGG----GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA 58
Query: 57 ELVDAAFPLLKGVVATTDAVEACTGVN---IAVMVGGF---------PRKEGMERKDVMS 104
+ + + + T D A G + VGG P K G+ ++
Sbjct: 59 KRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNG 118
Query: 105 --------KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCL 156
+ + + +E+ P+ ++ NPA + + + C
Sbjct: 119 PGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNPAGMVTEAVLRYTKQEKVVGL-CN 176
Query: 157 TRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188
+ + ++ L V V NH
Sbjct: 177 VPIGMRMGVAKL---LGVDADRVHIDFAGLNH 205
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 40.4 bits (95), Expect = 5e-04
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI--PPAAEALNG----V 54
+ + + + + GAAG +G L + + LG ++D+ P A +G
Sbjct: 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDAR 69
Query: 55 KMELVDAAFPLLKGVVAT-TDAV 76
+L + +V D +
Sbjct: 70 AADLSAPG--EAEKLVEARPDVI 90
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 37.6 bits (88), Expect = 0.003
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 RVLVTGAAGQIGYALV 22
++L+ GA GQIG L
Sbjct: 4 KILIIGACGQIGTELT 19
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 37.6 bits (88), Expect = 0.004
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 19/91 (20%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPM-IARG--VMLGT-----DQPVILHMLDIPPAAEALN 52
M + V VTGA+G IG LV + RG V T + + H+LD+P A L
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTV-RATVRDPTNVKKVKHLLDLPKAETHLT 59
Query: 53 GVKMELVD-AAFPLLKGVVATTDAVEACTGV 82
K +L D +F +A++ CTGV
Sbjct: 60 LWKADLADEGSF---------DEAIKGCTGV 81
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 35.8 bits (83), Expect = 0.013
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDI 44
R LV G AG IG A+ I + P LH++DI
Sbjct: 37 RFLVLGGAGSIGQAVTKEIFKR------NPQKLHVVDI 68
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 35.7 bits (83), Expect = 0.014
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
+ +P L+TG AG IG L+
Sbjct: 23 LPAQPKVWLITGVAGFIGSNLL 44
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 35.4 bits (82), Expect = 0.015
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
R+LVTGAAG +G A+ P + + + ++D+ A V +L DA
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLA-----HEVRLSDIVDLGAAEAHEEIVACDLADAQ--A 56
Query: 66 LKGVVATTDAV 76
+ +V D +
Sbjct: 57 VHDLVKDCDGI 67
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 35.3 bits (82), Expect = 0.017
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG--VMLGT------DQPVILHMLDIPPAAEALNGVKME 57
RV VTG G +G ++ + G V T + + + ++P A+E L+ +
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSV-NTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61
Query: 58 LVD-AAFPLLKGVVATTDAVEACTGV 82
L + +F A+E C G+
Sbjct: 62 LSNPDSF---------AAAIEGCVGI 78
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 35.1 bits (80), Expect = 0.028
Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 19/165 (11%)
Query: 39 LHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGF------- 91
+ DI + + ++ + + AV V GG
Sbjct: 34 VIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDE 93
Query: 92 --PRKEGMERKD------VMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKE 143
P K G+ ++ + + + N ++ NP+ ++
Sbjct: 94 GIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRN 153
Query: 144 FAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNH 188
+ + C + +I+E + ++ DV NH
Sbjct: 154 YLEYEKFIGL-CNV---PINFIREIAEMFSARLEDVFLKYYGLNH 194
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 34.9 bits (81), Expect = 0.028
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
+ P L+TG AG IG L+
Sbjct: 21 LIFSPKTWLITGVAGFIGSNLL 42
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 34.2 bits (78), Expect = 0.036
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 7 RVLVTGAAGQIGYALVP-MIARGVMLGTDQPVIL--HMLDIPPAAEALNGVKMELVDAAF 63
++ + GA G+ G ++ RG + + + I + +N ++ ++ D
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRG-----HEVTAIVRNAGKITQTHKDINILQKDIFDLTL 56
Query: 64 PLLKGVVATTDAVEA 78
L DA
Sbjct: 57 SDLSDQNVVVDAYGI 71
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 33.7 bits (78), Expect = 0.054
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 7 RVLVTGAAGQIGYALVPMIA-RGVMLGTDQPVILHMLDI 44
+L+ G GQ+G+ L +A G ++ D D
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDF 40
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.8 bits (78), Expect = 0.056
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+V +TG GQIG +
Sbjct: 23 KVFITGICGQIGSHIA 38
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.074
Identities = 30/197 (15%), Positives = 64/197 (32%), Gaps = 60/197 (30%)
Query: 101 DVMSKNVSIYKAQASALEQHAAPNCKVLVV-ANPANTNALI-LKEFAPSIPAKNITCLTR 158
+V + +A +CK+L+ T+ L S+ ++T
Sbjct: 252 NVQNAKA------WNAFN----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---- 297
Query: 159 LDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKD-- 216
L + + + L+ + D+ ++ N P ++ A E ++D
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTN------PRR----LSIIA------ESIRDGL 341
Query: 217 ---DAW--LNGEFITTVQQRGAAIIKA---RKLSSALSAASSACDHIRDWVLGTPEGTWV 268
D W +N + +TT+ + +++ RK+ LS V P +
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------------VF--PPSAHI 387
Query: 269 SMGVYS----DGSYNVP 281
+ S D +
Sbjct: 388 PTILLSLIWFDVIKSDV 404
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 33.4 bits (76), Expect = 0.082
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+++TGA G +G L
Sbjct: 2 NIVITGAKGFVGKNLK 17
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 33.1 bits (76), Expect = 0.11
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 8 VLVTGAAGQIGYALV 22
+LVTG++GQIG LV
Sbjct: 2 ILVTGSSGQIGTELV 16
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 32.5 bits (75), Expect = 0.15
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
M+ ++ VTG G +G +V
Sbjct: 1 MSL---KIAVTGGTGFLGQYVV 19
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 32.2 bits (74), Expect = 0.17
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 7 RVLVTGAAGQIGYALVPMIA-RGVMLGTD---QPVILHMLDI 44
R L+TGA+GQ+G L +++ R ++ + + LD+
Sbjct: 2 RTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDL 43
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 31.5 bits (72), Expect = 0.22
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 7 RVLVTGAAGQIGYALVPM-IARGVMLGTDQPVILH----MLDIPPAAEALNGVKMELVDA 61
++ + G+ G++G +L+ Q + +A++ +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTD-----YQIYAGARKVEQVPQYNNVKAVHFDVDWTPEE 56
Query: 62 AFPLLKGVVATTDAVEACTG 81
L G+ DA+ +G
Sbjct: 57 MAKQLHGM----DAIINVSG 72
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 31.8 bits (73), Expect = 0.23
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
M + RVLVTGA G +G A+
Sbjct: 1 MNR---RVLVTGATGLLGRAVH 19
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 31.7 bits (73), Expect = 0.28
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
++L+TGA GQ+G +
Sbjct: 14 KILITGANGQLGREIQ 29
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 31.7 bits (73), Expect = 0.30
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 7 RVLVTGAAGQIGYALV 22
R+L+TG AG IG L
Sbjct: 9 RILITGGAGFIGGHLA 24
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 31.3 bits (72), Expect = 0.35
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
RV++TGA GQ+G L
Sbjct: 7 RVIITGANGQLGKQLQ 22
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 31.4 bits (72), Expect = 0.35
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 22/91 (24%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPM-IARG--VMLGT-----DQPVILHMLDIPPAAEALN 52
+ K+ V G G + LV + + +G V T +Q + H+L++ + L
Sbjct: 7 IGKK--TACVVGGTGFVASLLVKLLLQKGYAV-NTTVRDPDNQKKVSHLLELQELGD-LK 62
Query: 53 GVKMELVD-AAFPLLKGVVATTDAVEACTGV 82
+ +L D +F + C V
Sbjct: 63 IFRADLTDELSF---------EAPIAGCDFV 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.40
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 196 VNHATVNTAAGEKPVRELVKDDAWLNGEFITTV------QQRGAAIIKARKLSSALSAAS 249
+N V + ++ ++ +V+ G + V QQ + A L AL +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ----YVAAGDL-RALDTVT 1866
Query: 250 SACDHIR 256
+ + I+
Sbjct: 1867 NVLNFIK 1873
Score = 30.8 bits (69), Expect = 0.80
Identities = 54/334 (16%), Positives = 96/334 (28%), Gaps = 124/334 (37%)
Query: 43 DIPPAAEALNGVKMELVDAAF------PLLKGVVATTDAV--------EAC--TGVNIAV 86
D P A ELV F + V D V E C G +I
Sbjct: 51 DDEPTTPA------ELV-GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 87 MVGGFP---RKEGMERKDV--------MSKNVSIYKAQASALEQHA-APNCKVLVV---- 130
+ ++ K++ + K SAL + N +++ +
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 131 ANPA----------NTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVK 180
N T +++ + A+ ++ L R + +EK+ Q ++
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLD------AEKVFTQGLNIL 216
Query: 181 NVIIWGNHSSSQYPDVN---HATV--------------NTA--AGEKPVRELVKDDAWLN 221
W + S+ PD + + TA G P EL ++L
Sbjct: 217 E---WLENPSNT-PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP-GELR---SYLK 268
Query: 222 GEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVP 281
G T ++ A A++ S W S + +V
Sbjct: 269 G---ATG--HSQGLVTAV----AIAETDS----------------WESF--FV----SVR 297
Query: 282 AGLIYSFPVTCRNGEWTIVQGTDAILYPMSFLSP 315
+ F + V+ +A YP + L P
Sbjct: 298 KAITVLF--------FIGVRCYEA--YPNTSLPP 321
Score = 27.7 bits (61), Expect = 6.4
Identities = 29/162 (17%), Positives = 46/162 (28%), Gaps = 54/162 (33%)
Query: 169 SEKLNVQVSDVKNVIIWGNHSSSQYPDVNHATVNT---------AAGEKPVRE--LVKDD 217
+EK+ ++++ + + AT T AA E ++ L+ D
Sbjct: 1703 TEKIFKEINEHSTSYTF-RSEK----GLLSATQFTQPALTLMEKAAFED-LKSKGLIPAD 1756
Query: 218 AW-----LNGEF---------------ITTVQQRGAAIIKA--RKLSSALSAASSACDHI 255
A L GE+ + V RG + A R + A +
Sbjct: 1757 ATFAGHSL-GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 256 RDWVLGTPEG--TWVSMGVYSDGS------YNVP------AG 283
R + E V G YNV AG
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.43
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 27/47 (57%)
Query: 105 KNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAP-SIPA 150
K ++ K QAS LK +A S PA
Sbjct: 19 KQ-ALKKLQAS-------------------------LKLYADDSAPA 39
Score = 26.8 bits (58), Expect = 7.2
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 9/25 (36%)
Query: 229 QQRGAAIIKARKLSSALS--AASSA 251
Q +K KL ++L A SA
Sbjct: 20 QA-----LK--KLQASLKLYADDSA 37
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 31.1 bits (71), Expect = 0.45
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 RVLVTGAAGQIGYALV 22
++VTG AG IG +V
Sbjct: 48 MIIVTGGAGFIGSNIV 63
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 30.8 bits (70), Expect = 0.47
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
RVLV G G +G V V +D+ EA V +++ D+
Sbjct: 9 RVLVYGGRGALGSRCVQAFRAR---NWW--VAS--IDVVENEEASASVIVKMTDSFTEQA 61
Query: 67 KGVVATTDAVEACTG----VNIAVMVGGFPRKEGMERKD---VMSKNV 107
V A + + +A G K K+ + +++
Sbjct: 62 DQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSI 109
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.1 bits (71), Expect = 0.48
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+L+TG AG +G L
Sbjct: 12 TILITGGAGFVGSNLA 27
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.4 bits (69), Expect = 0.57
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPM-IARG 28
+ + +RVLV GA G++ L+ +G
Sbjct: 17 LYFQGMRVLVVGANGKVARYLLSELKNKG 45
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 30.9 bits (69), Expect = 0.58
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 14/120 (11%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVIL---HMLDIPPAAEALNGVKMELVDAAF 63
L+ G G IG +L ++ G V +N V+ ++ D
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPD- 61
Query: 64 PLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAP 123
+ + T V V R E + N +++ A+ +
Sbjct: 62 -------DSQAKLSPLTDVTHVFYVTWANRSTEQENCEA---NSKMFRNVLDAVIPNCPN 111
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 30.3 bits (69), Expect = 0.73
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMIAR--GVML--GTDQP--VILHMLDIPPAAEALNGV 54
M +RV + GA G++G L+ GV L ++ +L A GV
Sbjct: 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV 60
Query: 55 KMEL-VDAAFPLLKGVV------ATTDAVEACTGVNIAVMVG--GFPRKEGMERKDVMSK 105
++ +DA + T + + C +++G GF + G + +
Sbjct: 61 TVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFD-EAGKQAIRDAAA 119
Query: 106 NVSIYKA 112
+++I A
Sbjct: 120 DIAIVFA 126
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 30.6 bits (70), Expect = 0.73
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 7 RVLVTGAAGQIGYALV-PMIARGVMLGTDQPVI 38
R+LVTG AG IG V ++A VI
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI 34
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 30.0 bits (67), Expect = 0.81
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVP-MIARG 28
++ V GA G+ G A+V RG
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRG 24
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 30.0 bits (68), Expect = 0.98
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
V+V G AG +G LV
Sbjct: 34 NVMVVGGAGFVGSNLV 49
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 29.4 bits (67), Expect = 1.2
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 6 VRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKME-LVDAAFP 64
+RV V GA G++G +V +A D + LD L E ++D P
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAA-----ADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHP 55
Query: 65 LLKGVVATTDAVEACTGVNIAVMVG--GF--PRKEGMERKDVMSKNVSIYKA 112
+E I +VG GF R + +E V N S+ A
Sbjct: 56 -----DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIA 102
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.5 bits (67), Expect = 1.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 8 VLVTGAAGQIGYALV 22
++VTG AG IG +V
Sbjct: 2 IIVTGGAGFIGSNIV 16
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 29.6 bits (67), Expect = 1.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 7 RVLVTGAAGQIGYALV 22
++ +TGA G I +
Sbjct: 31 KISITGAGGFIASHIA 46
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural
genomics, TETR/CCRR FA helix turn helix DNA binding
domain, PSI; 2.20A {Salmonella typhimurium} SCOP:
a.4.1.9 a.121.1.1
Length = 224
Score = 29.2 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 42 LDIPPAAEALNGVKMELVDAAFPLL--KGVVATTDAVEACTGVNIAVMVGGFPRKEG 96
++IP K +L+ AA G+ ATT + A G NIA + F KE
Sbjct: 1 MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFGSKED 57
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 7 RVLVTGAAGQIGYALV 22
R++VTG AG IG LV
Sbjct: 2 RIVVTGGAGFIGSHLV 17
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 29.2 bits (65), Expect = 1.6
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
+ RVL+ GA G IG +
Sbjct: 6 VPSPKGRVLIAGATGFIGQFVA 27
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 29.2 bits (66), Expect = 2.0
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG 28
+ V GA G +G+ A G
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAG 37
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 29.3 bits (66), Expect = 2.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 4 EPVRVLVTGAAGQIGYALVP 23
P+ V +TG+ G +G AL
Sbjct: 146 SPLTVAITGSRGLVGRALTA 165
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 28.5 bits (64), Expect = 2.2
Identities = 8/23 (34%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG 28
++++ GA+G +G AL+ + RG
Sbjct: 6 KIVLIGASGFVGSALLNEALNRG 28
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 28.8 bits (64), Expect = 2.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 7 RVLVTGAAGQIGYALVPMIAR 27
+ + GAAGQI L +
Sbjct: 7 YITILGAAGQIAQXLTATLLT 27
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 28.7 bits (65), Expect = 2.2
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 124 NCKVLVVA-NPANTNAL-ILKEFAPSIP 149
K +++A N + A I++E A +IP
Sbjct: 69 EVKAIIIACNTISAIAKDIVQEIAKAIP 96
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 17/84 (20%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+V+V G G +G A++ + G V+ +D+ +A + L+
Sbjct: 5 KVIVYGGKGALGSAILEFFKKN---GYT--VLN--IDLSANDQA----------DSNILV 47
Query: 67 KGVVATTDAVEACTGVNIAVMVGG 90
G T+ ++ + + G
Sbjct: 48 DGNKNWTEQEQSILEQTASSLQGS 71
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 28.7 bits (64), Expect = 2.3
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVP-MIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELV 59
M R+L+ GA G IG + + G +L + +
Sbjct: 1 MGSRS-RILLIGATGYIGRHVAKASLDLG-----HPTFLLVRESTASSNSEKAQLLESFK 54
Query: 60 DAAFPLLKGVVATTDA-VEACTGVNIAVMVGGFPRKEG 96
+ ++ G + + VEA V++ + G + E
Sbjct: 55 ASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIES 92
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.8 bits (65), Expect = 2.3
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 20/109 (18%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+LV G +G +G +V + I +D A + ++
Sbjct: 24 NILVLGGSGALGAEVVKFFKSK---SWN--TIS--IDFRENPNADHSFTIKDSGEE---- 72
Query: 67 KGVVATTDAVEACTG-----VNIAVMVGGFPRKEGMERKD---VMSKNV 107
+ + + + + + V A G K ++ N+
Sbjct: 73 -EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNL 120
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 28.6 bits (65), Expect = 2.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 7 RVLVTGAAGQIGYALVPMIARG 28
++VTG AG IG +V ++
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSES 24
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 28.6 bits (64), Expect = 2.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 7 RVLVTGAAGQIGYALVPMIA 26
VL+ GA GQI ++ +A
Sbjct: 25 NVLILGAGGQIARHVINQLA 44
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 28.7 bits (64), Expect = 2.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 7 RVLVTGAAGQIGYALVP 23
VLVTGA+G+ G +
Sbjct: 6 TVLVTGASGRTGQIVYK 22
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 28.7 bits (65), Expect = 2.6
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMV 88
L VVA D V+A +I + V
Sbjct: 72 HKLPPNVVAVPDVVQAAEDADILIFV 97
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 28.8 bits (65), Expect = 2.9
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 63 FPLLKGVVATTDAVEACTGVNIAVMV 88
PL +VA +D ++ + +
Sbjct: 85 VPLPHNIVAHSDLASVINDADLLIFI 110
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 28.3 bits (64), Expect = 3.1
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 19/79 (24%)
Query: 7 RVLVTGAAGQIGYALV-PMIARGVMLGTDQPVIL------HMLDIPPAAEALNGVKMELV 59
RVLVTG AG IG +V ++ARG + +L ++P +++L
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARG-----LEVAVLDNLATGKRENVPKGVPF---FRVDLR 53
Query: 60 DAAFPLLKGVVATT--DAV 76
D ++ V
Sbjct: 54 DKEG--VERAFREFRPTHV 70
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 28.3 bits (64), Expect = 3.2
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MAKEPVRVLVTGAAGQIGYALVPMI 25
+ +LVTG AG IG V +
Sbjct: 20 FQSNAMNILVTGGAGFIGSNFVHYM 44
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
1ib4_A*
Length = 339
Score = 28.2 bits (63), Expect = 3.5
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 242 SSALSAASSACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQ 301
+S+ S + ++C I + P GT + + +DG++ + +G +F +G V
Sbjct: 12 ASSASKSKTSCSTIVLSNVAVPSGTTLDLTKLNDGTHVIFSGET-TFGYKEWSGPLISVS 70
Query: 302 GTDAILY 308
G+D +
Sbjct: 71 GSDLTIT 77
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 27.7 bits (62), Expect = 3.8
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVPM-IARG 28
++ + GA GQ G + + G
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAG 27
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 28.0 bits (62), Expect = 4.3
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 2 AKEPVRVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDA 61
++++ G G IG + R + + I P + + ++ E
Sbjct: 1 GSHMEKIIIYGGTGYIGKF----MVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSM 56
Query: 62 AFPLLKGVVATTDA-VEACTGVNIAV 86
+++G + + V V+I +
Sbjct: 57 GVTIIEGEMEEHEKMVSVLKQVDIVI 82
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 28.2 bits (63), Expect = 4.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 7 RVLVTGAAGQIGYALV 22
RV+V G G G+A
Sbjct: 13 RVMVIGGDGYCGWATA 28
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 27.9 bits (63), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVI 38
++L+TG AG IG A+V I + T V+
Sbjct: 2 KILITGGAGFIGSAVVRHIIK----NTQDTVV 29
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 27.9 bits (63), Expect = 4.4
Identities = 15/122 (12%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 5 PVRVLVTGAAGQIGYALVPMIAR--GVML--GTDQPVILHM-LDIPPAAEALNGVKMEL- 58
+++ + GA+G++G L+ + L D+ + D GV +
Sbjct: 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDD 66
Query: 59 VDAAFPLLKGVV------ATTDAVEACTGVNIAVMVG--GFPRKEGMERKDVMSKNVSIY 110
++ ++ T ++A ++ +++G GF + + + +++
Sbjct: 67 IERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFS-EPQKAQLRAAGEKIALV 125
Query: 111 KA 112
+
Sbjct: 126 FS 127
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 28.1 bits (63), Expect = 4.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 7 RVLVTGAAGQIGYALV 22
RVL+ G G IG L
Sbjct: 2 RVLILGVNGFIGNHLT 17
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 27.7 bits (61), Expect = 4.5
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 83 NIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASA 116
+I V VG R + + + + V + SA
Sbjct: 202 SICVFVGAMARGKDNFADEYVDEKVGLSNYPLSA 235
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 27.9 bits (63), Expect = 4.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 3 KEPVRVLVTGAAGQIGYALV 22
+ ++VTG AG IG V
Sbjct: 2 SQFKNIIVTGGAGFIGSNFV 21
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 27.9 bits (62), Expect = 4.9
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
MA++ + V GA G+ G +L+
Sbjct: 1 MAQQKKTIAVVGATGRQGASLI 22
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 27.9 bits (63), Expect = 5.2
Identities = 7/50 (14%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 109 IYKAQASALEQHAAPNCKVLVVANPAN-TNALILKEFAPSIPAKNITCLT 157
+LE+ + K +++ +P+N +I +E ++
Sbjct: 139 FCDFTVESLEEALSDKTKAIIINSPSNPLGEVIDREIYEFAYENIPYIIS 188
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 1 MAKEPVRVLVTGAAGQIGYALV 22
M + RVL+ G G IG +V
Sbjct: 1 MD-KKSRVLIVGGTGYIGKRIV 21
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 27.8 bits (62), Expect = 5.5
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+VL+ G G IG+ L
Sbjct: 26 KVLILGVNGFIGHHLS 41
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 27.6 bits (62), Expect = 5.7
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 7 RVLVTGAAGQIGYALVP-MIARG 28
++L+TG G +G L +++G
Sbjct: 3 KLLITGGCGFLGSNLASFALSQG 25
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 27.5 bits (61), Expect = 6.3
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 7 RVLVTGAAGQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
++L+ G G IG +V + G ++ E + LL
Sbjct: 4 KILILGPTGAIGRHIVWASIK---AGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 67 KGVVATTDA-VEACTGVNIAVMVGGFPRKEG 96
+G + + V+A V+I + G E
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIED 91
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.5 bits (62), Expect = 6.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 7 RVLVTGAAGQIG 18
R+L+TG AG +G
Sbjct: 22 RILITGGAGCLG 33
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 27.6 bits (62), Expect = 6.9
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 8 VLVTGAAGQIGYALVPMIARGVMLGTDQ-PVILHMLDIPPAAEALNGVKMELVDAAFPLL 66
+VTGAA IG IA + D V+ D+ AAE L V ++ A L
Sbjct: 216 AVVTGAARGIGAT----IAE--VFARDGATVVAI--DVDGAAEDLKRVADKVGGTALTL- 266
Query: 67 KGVVATTDAVEA 78
V DAV+
Sbjct: 267 --DVTADDAVDK 276
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 27.5 bits (62), Expect = 7.2
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
++LVTG G IG +
Sbjct: 5 KLLVTGGMGFIGSNFI 20
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 27.5 bits (61), Expect = 7.9
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 110 YKAQASALEQHAAPNCKVLVVANPAN 135
++ S L++ P K+ NP+N
Sbjct: 231 WQYPDSELDKLKDPAIKIFFCVNPSN 256
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 27.1 bits (61), Expect = 8.5
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 110 YKAQASALEQHAAPNCKVLVVANPAN-TNALILKEF 144
+ L Q P K++ + N N T A++ + +
Sbjct: 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTY 175
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.9 bits (60), Expect = 8.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 7 RVLVTGAAGQIGYALV 22
+++TGA G +G +
Sbjct: 2 NIMLTGATGHLGTHIT 17
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 26.9 bits (60), Expect = 8.9
Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 110 YKAQASALEQHAAPNCKVLVVANPAN-TNALI----LKEFAPSIPAKNITCLT 157
K + ++ +NP N T + L+ ++ +
Sbjct: 168 EKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIE 220
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport,
respiratory chain, cell flavoprotein, FMN, iron,
iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3*
3m9s_3*
Length = 783
Score = 27.2 bits (60), Expect = 9.0
Identities = 13/141 (9%), Positives = 44/141 (31%), Gaps = 3/141 (2%)
Query: 114 ASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLN 173
L++ + + + L+ E A ++ ++ R +L + +
Sbjct: 330 KEGLKEARGEEVGLYLAHDATLEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLED 389
Query: 174 VQVSDVKNVIIWGNHSSSQYPDVNHATVNTAAGEKPVRELVKDDAWLNGEFITTVQQRGA 233
+ +D ++ G+ + P ++ KP + + + + +R
Sbjct: 390 LLQADF--ALVLGDPTEEA-PILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTD 446
Query: 234 AIIKARKLSSALSAASSACDH 254
+ + L ++ +
Sbjct: 447 KMALFAPYRAPLMKWAAIHEV 467
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 27.1 bits (61), Expect = 9.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 118 EQHAAPNCKVLVVANPAN-TNALILKE 143
A + L+VA+PAN T ++
Sbjct: 155 ADFAGLDLAGLMVASPANPTGTMLDHA 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.394
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,908,708
Number of extensions: 302990
Number of successful extensions: 1122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1042
Number of HSP's successfully gapped: 152
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)