Query 020876
Match_columns 320
No_of_seqs 133 out of 949
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 1.4E-28 3E-33 232.9 9.7 137 165-317 148-299 (302)
2 PF02338 OTU: OTU-like cystein 99.9 7.4E-25 1.6E-29 179.4 8.8 113 182-310 1-121 (121)
3 PF10275 Peptidase_C65: Peptid 99.8 5E-21 1.1E-25 176.6 11.7 165 149-315 13-244 (244)
4 KOG3991 Uncharacterized conser 99.8 3.1E-20 6.7E-25 171.4 7.3 161 150-315 38-255 (256)
5 KOG3288 OTU-like cysteine prot 99.6 4.1E-16 9E-21 146.3 7.8 124 176-317 110-234 (307)
6 KOG2605 OTU (ovarian tumor)-li 99.4 1.1E-13 2.4E-18 136.5 4.0 100 166-276 208-310 (371)
7 COG5539 Predicted cysteine pro 98.8 4.5E-10 9.7E-15 107.4 -0.8 132 169-314 164-305 (306)
8 COG5539 Predicted cysteine pro 98.7 1.2E-08 2.6E-13 97.7 3.7 110 183-314 119-230 (306)
9 PF05415 Peptidase_C36: Beet n 82.3 5.2 0.00011 33.2 6.3 64 181-273 3-68 (104)
10 PRK09784 hypothetical protein; 59.7 7.1 0.00015 38.1 2.5 44 149-194 173-218 (417)
11 KOG2605 OTU (ovarian tumor)-li 30.8 23 0.0005 35.9 1.0 46 232-277 2-47 (371)
12 cd03346 eu_TrpOH Eukaryotic tr 27.0 29 0.00063 34.1 1.0 111 147-271 88-212 (287)
13 PRK10963 hypothetical protein; 25.7 67 0.0015 29.8 3.1 17 219-235 6-22 (223)
14 cd00361 arom_aa_hydroxylase Bi 25.0 18 0.00038 34.3 -0.9 112 146-271 31-153 (221)
15 PF05412 Peptidase_C33: Equine 23.9 68 0.0015 27.4 2.5 17 182-198 5-21 (108)
16 TIGR02934 nifT_nitrog probable 22.3 6.8 0.00015 30.6 -3.5 32 226-257 6-39 (67)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-28 Score=232.88 Aligned_cols=137 Identities=38% Similarity=0.669 Sum_probs=121.7
Q ss_pred cchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------
Q 020876 165 VKRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIE------- 237 (320)
Q Consensus 165 ~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe------- 237 (320)
.+....|..+++.+.+||.||+|||+||+|||..+++..+ ..+.||..+++||++|.++|.+|+.
T Consensus 148 ~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~--------~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~ 219 (302)
T KOG2606|consen 148 EKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLL--------SVQKLREETADYMREHVEDFLPFLLDEETGDS 219 (302)
T ss_pred HHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCC--------cHHHHHHHHHHHHHHHHHHhhhHhcCcccccc
Confidence 3566778889999999999999999999999998877654 4788999999999999999999984
Q ss_pred ---cCHHHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCC----C-c
Q 020876 238 ---GDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGY----G-H 309 (320)
Q Consensus 238 ---~sfeeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~----G-H 309 (320)
++|++||+.|++++.|||++||.|+|++|++||.||+.+++ +..||++|.+ ..||.|+|++. | |
T Consensus 220 ~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p------~~~~geey~k--d~pL~lvY~rH~y~LGeH 291 (302)
T KOG2606|consen 220 LGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGP------ILEYGEEYGK--DKPLILVYHRHAYGLGEH 291 (302)
T ss_pred CCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCC------ceeechhhCC--CCCeeeehHHhHHHHHhh
Confidence 25999999999999999999999999999999999998854 5789999974 58999999985 3 9
Q ss_pred ceeeecCC
Q 020876 310 YDILETFS 317 (320)
Q Consensus 310 YDSL~~~~ 317 (320)
|||+.+..
T Consensus 292 YNS~~~~~ 299 (302)
T KOG2606|consen 292 YNSVTPLK 299 (302)
T ss_pred hccccccc
Confidence 99998754
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.91 E-value=7.4e-25 Score=179.39 Aligned_cols=113 Identities=38% Similarity=0.668 Sum_probs=88.9
Q ss_pred CCCCchhhHHHHHHHHhcC-CCCCChhHHHHHHHHHHHHHHHHHHh-hChhhhhhhhccCHHHHHHhhcCCCcccCHHHH
Q 020876 182 LADGRCLFRAIAHGACLRS-GEEVPDEERQRELADELRAQVVDELL-KRRKETEWFIEGDFDTYVKEIQQPYVWGGEPEL 259 (320)
Q Consensus 182 pGDGNCLFRAVA~qL~~~~-G~~~~d~~l~q~~h~eLRq~vvdyI~-~n~d~Fe~FIe~sfeeY~~rM~k~g~WGG~lEL 259 (320)
||||||||||||+||+... |. +..|.+||+.+++||+ +|++.|++|+.++ +|+++++|||++||
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~--------~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el 66 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGS--------EDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIEL 66 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSS--------TTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHH
Confidence 7999999999999998443 22 2579999999999999 9999999999877 99999999999999
Q ss_pred HHHHHhcCCCEEEEEeecCCCceeeEEecCCcc-cCCCCCcEEEEEcC-----CCcc
Q 020876 260 LMASHVLKKPIAVFMVVQSSGNLVNIANYGEEY-QKDKESPINVLFHG-----YGHY 310 (320)
Q Consensus 260 ~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~-~~~~~~pI~LlY~~-----~GHY 310 (320)
+|+|++|+++|+||+.... ..... +.+...+ ......++.++|+. .+||
T Consensus 67 ~a~a~~~~~~I~v~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 67 QALANVLNRPIIVYSSSDG-DNVVF-IKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HHHHHHHTSEEEEECETTT-BEEEE-EEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred HHHHHHhCCeEEEEEcCCC-Cccce-eeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 9999999999999987432 12222 2332211 11236889999987 6798
No 3
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.85 E-value=5e-21 Score=176.64 Aligned_cols=165 Identities=22% Similarity=0.323 Sum_probs=116.6
Q ss_pred cccccccCC-CCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc---CCCC--C------------------
Q 020876 149 EKISKIDGG-GGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR---SGEE--V------------------ 204 (320)
Q Consensus 149 ~~~~~~~~e-e~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~---~G~~--~------------------ 204 (320)
.|++.+..| .+.+..++.+...|.+.--.+++|+|||||||||++++.... .... +
T Consensus 13 ~~~~~L~~ey~~~~~~~~~ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~~~~~~~~i~~~~~~l~~~~ 92 (244)
T PF10275_consen 13 EPLSALVKEYSDNDPIFQKKIKKLSQKYSGIRRVRGDGNCFYRAFGFSYLEQLLESPDDQEFERFLARIKSLKFKLEAFG 92 (244)
T ss_dssp EETCHHHHCTTTTCHHHHHHHHHHHHHEEEEE-B-SSSTHHHHHHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhccCHHHHHHHHHHHhhhhheEeecCCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 467778788 444888888888888874459999999999999999975521 1110 0
Q ss_pred -C-----------------------hh----HH---------HHHHHHHHHHHHHHHHhhChhhhhhhhc----cCHHHH
Q 020876 205 -P-----------------------DE----ER---------QRELADELRAQVVDELLKRRKETEWFIE----GDFDTY 243 (320)
Q Consensus 205 -~-----------------------d~----~l---------~q~~h~eLRq~vvdyI~~n~d~Fe~FIe----~sfeeY 243 (320)
+ .. .+ +......+|..++.||+.|+++|++|++ .++++|
T Consensus 93 ~~~~~~~~f~~~f~~~l~~i~~~~~~~~~~~~l~~~f~~~~~s~~iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~ 172 (244)
T PF10275_consen 93 YDEEIFEDFYDEFLELLEKIANGESNSQRQEELLEAFNDEEISDYIVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEF 172 (244)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCTSSHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHhCcCcccHHHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHH
Confidence 0 00 11 2346678999999999999999999997 689999
Q ss_pred HHhhcCC-CcccCHHHHHHHHHhcCCCEEEEEeecC-CCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876 244 VKEIQQP-YVWGGEPELLMASHVLKKPIAVFMVVQS-SGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET 315 (320)
Q Consensus 244 ~~rM~k~-g~WGG~lEL~ALA~~l~v~I~Vy~~d~~-~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~ 315 (320)
|++-..+ +..++++.|.|||++|+++|.|+..|++ .+..+....|.++.. .....|.|||. +||||+|+|
T Consensus 173 C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~-~~~~~i~LLyr-pgHYdIly~ 244 (244)
T PF10275_consen 173 CSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNE-SQEPQITLLYR-PGHYDILYP 244 (244)
T ss_dssp HHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SST-TSS-SEEEEEE-TBEEEEEEE
T ss_pred HHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccC-CCCCEEEEEEc-CCccccccC
Confidence 9876665 8999999999999999999999999975 444455556643211 13578999996 799999986
No 4
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.1e-20 Score=171.38 Aligned_cols=161 Identities=22% Similarity=0.277 Sum_probs=123.6
Q ss_pred ccccccCCCCCCccccchhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhc-CCCCC---------------------C--
Q 020876 150 KISKIDGGGGGDDLNVKRCEIINERPFKVTGVLADGRCLFRAIAHGACLR-SGEEV---------------------P-- 205 (320)
Q Consensus 150 ~~~~~~~ee~~~~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~-~G~~~---------------------~-- 205 (320)
|++.+-.|=.++..+..+.+.|.+..-.+++++|||||||||++..+... -++.. +
T Consensus 38 ~~s~l~~eY~~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~ll~d~~~l~~fka~~~kt~~~L~~~gf~e~ 117 (256)
T KOG3991|consen 38 PLSSLYAEYFGDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLELLLLDRAELQKFKAAVEKTKETLVLLGFPEF 117 (256)
T ss_pred cHHHHHHHhcCChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHHHHhchHHHHHHHHHHHhhhHHHHHcCCCcc
Confidence 45555555233447888888888886779999999999999998844310 00000 0
Q ss_pred ---------------------hhH---------HHHHHHHHHHHHHHHHHhhChhhhhhhhcc--CHHHHHHhhcCC-Cc
Q 020876 206 ---------------------DEE---------RQRELADELRAQVVDELLKRRKETEWFIEG--DFDTYVKEIQQP-YV 252 (320)
Q Consensus 206 ---------------------d~~---------l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~--sfeeY~~rM~k~-g~ 252 (320)
.++ -+....++||..++.+|++|+|+|++||++ ++++||.+-.+| .+
T Consensus 118 t~~dFh~~Fievle~v~~g~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~k 197 (256)
T KOG3991|consen 118 TFEDFHDTFIEVLEDVEGGTSVDELLKIFNDQSSSDYIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYK 197 (256)
T ss_pred chhhHHHHHHHHHHHHcCCccHHHHHHHHhccchhHHHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhh
Confidence 000 024578999999999999999999999985 899999999888 78
Q ss_pred ccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeec
Q 020876 253 WGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILET 315 (320)
Q Consensus 253 WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~ 315 (320)
-.||++|.||++++++.|+|.++|+.+++....++|-+. ..+.|.|||. +||||.||+
T Consensus 198 esdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~----s~P~I~LLYr-pGHYdilY~ 255 (256)
T KOG3991|consen 198 ESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEA----SAPEIYLLYR-PGHYDILYK 255 (256)
T ss_pred ccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccc----cCceEEEEec-CCccccccC
Confidence 899999999999999999999999876655555555422 2566899995 799999987
No 5
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.1e-16 Score=146.26 Aligned_cols=124 Identities=26% Similarity=0.345 Sum_probs=104.0
Q ss_pred cEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhh-hhhhccCHHHHHHhhcCCCccc
Q 020876 176 FKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKET-EWFIEGDFDTYVKEIQQPYVWG 254 (320)
Q Consensus 176 l~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~F-e~FIe~sfeeY~~rM~k~g~WG 254 (320)
+.++.||.|+.|||+||++.+....+. ...+||+.++..+..||+.| +.++..+-+|||++|+++..||
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWG 179 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWG 179 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccC
Confidence 567889999999999999999742221 13689999999999999999 7788889999999999999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeeecCC
Q 020876 255 GEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILETFS 317 (320)
Q Consensus 255 G~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~~~~ 317 (320)
|.+||..||+.|++.|.|++... ..|..||++..- ...+.|+|.+ -|||.|....
T Consensus 180 GaIElsILS~~ygveI~vvDiqt-----~rid~fged~~~--~~rv~llydG-IHYD~l~m~~ 234 (307)
T KOG3288|consen 180 GAIELSILSDYYGVEICVVDIQT-----VRIDRFGEDKNF--DNRVLLLYDG-IHYDPLAMNE 234 (307)
T ss_pred ceEEeeeehhhhceeEEEEecce-----eeehhcCCCCCC--CceEEEEecc-cccChhhhcc
Confidence 99999999999999999998764 346789976321 5778899964 3999987644
No 6
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-13 Score=136.46 Aligned_cols=100 Identities=28% Similarity=0.391 Sum_probs=86.3
Q ss_pred chhhhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHH
Q 020876 166 KRCEIINERPFKVTGVLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVK 245 (320)
Q Consensus 166 ~~~~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~ 245 (320)
.........++.++++.+||||+|||+|+|++. + ++.|..+|+.+++++.++++.|+.|+.+++.+|+.
T Consensus 208 ~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~---d--------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k 276 (371)
T KOG2605|consen 208 RSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG---D--------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIK 276 (371)
T ss_pred HHHHHHHHhhhhhhhcccCCchhhhccHHHhhc---C--------HHHHHHHHHHHHHHHhhcccccccccccchhhccc
Confidence 344444567899999999999999999999994 2 36899999999999999999999999999999999
Q ss_pred hhcCCCcccCHHHHHHHHH---hcCCCEEEEEee
Q 020876 246 EIQQPYVWGGEPELLMASH---VLKKPIAVFMVV 276 (320)
Q Consensus 246 rM~k~g~WGG~lEL~ALA~---~l~v~I~Vy~~d 276 (320)
+|+++++||+++|++|+|. +...++.+.+..
T Consensus 277 ~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~ 310 (371)
T KOG2605|consen 277 RKRADGEPGNHIEQQAAADIYEEIEKPLNITSFK 310 (371)
T ss_pred ccccCCCCcchHHHhhhhhhhhhccccceeeccc
Confidence 9999999999999999995 455566665543
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=4.5e-10 Score=107.38 Aligned_cols=132 Identities=17% Similarity=0.036 Sum_probs=94.1
Q ss_pred hhhhcCCcEEEEeCCCCchhhHHHHHHHHhcCC-CCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhc-------cCH
Q 020876 169 EIINERPFKVTGVLADGRCLFRAIAHGACLRSG-EEVPDEERQRELADELRAQVVDELLKRRKETEWFIE-------GDF 240 (320)
Q Consensus 169 ~~l~~~gl~v~~IpGDGNCLFRAVA~qL~~~~G-~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe-------~sf 240 (320)
..+-...+.--.+.|||+|+|-+|++||..+-. .++ ..-+.+|-.-..|..++...|..|.- -.|
T Consensus 164 ~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv-------~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~ 236 (306)
T COG5539 164 VIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDV-------DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLW 236 (306)
T ss_pred hHHHHHhhhccccCCCceEEEeEeccccceeeeeeec-------chhHHhhccCChhhhhhhhhhcccccchhhhhcchH
Confidence 333344677788999999999999999975422 111 12366777777788778888877763 279
Q ss_pred HHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCC--Ccceeee
Q 020876 241 DTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGY--GHYDILE 314 (320)
Q Consensus 241 eeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~--GHYDSL~ 314 (320)
++||..|+-+..||+.+|+++||..|++|+.+++..+. +++|+.-.. .....+.+.-|.. ||||++.
T Consensus 237 dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~------~ik~n~c~~-~~~~e~~~~~Ha~a~GH~n~~~ 305 (306)
T COG5539 237 DTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASP------SIKCNICGT-GFVGEKDYYAHALATGHYNFGE 305 (306)
T ss_pred HHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCc------eEEeecccc-ccchhhHHHHHHHhhcCccccC
Confidence 99999999999999999999999999999999987543 345543211 1123333333333 7999873
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.2e-08 Score=97.74 Aligned_cols=110 Identities=26% Similarity=0.219 Sum_probs=92.9
Q ss_pred CCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhcc-CHHHHHHhhcCCCccc-CHHHHH
Q 020876 183 ADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEG-DFDTYVKEIQQPYVWG-GEPELL 260 (320)
Q Consensus 183 GDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~-sfeeY~~rM~k~g~WG-G~lEL~ 260 (320)
.|..|+|++.+..++. .-..+||..|+..+.+|||.|.+.+.+ +--.|+.+++++-.|| |.+|+.
T Consensus 119 ~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia 185 (306)
T COG5539 119 DDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIA 185 (306)
T ss_pred CchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEe
Confidence 5899999999999872 147899999999999999999999875 8999999999999999 999999
Q ss_pred HHHHhcCCCEEEEEeecCCCceeeEEecCCcccCCCCCcEEEEEcCCCcceeee
Q 020876 261 MASHVLKKPIAVFMVVQSSGNLVNIANYGEEYQKDKESPINVLFHGYGHYDILE 314 (320)
Q Consensus 261 ALA~~l~v~I~Vy~~d~~~~~lv~I~~fG~e~~~~~~~pI~LlY~~~GHYDSL~ 314 (320)
++++-|++.|.|+.++.. .+.+|++..- ...+.++|.+ +|||...
T Consensus 186 ~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~~---~q~~~i~f~g-~hfD~~t 230 (306)
T COG5539 186 IISDQLPVRIHVVDVDKD-----SEDRYNSHPY---VQRISILFTG-IHFDEET 230 (306)
T ss_pred Eeccccceeeeeeecchh-----HHhhccCChh---hhhhhhhhcc-cccchhh
Confidence 999999999999999854 2346764321 3567788875 5999765
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=82.27 E-value=5.2 Score=33.24 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=43.8
Q ss_pred eCCCCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHhhChhhhhhhhccCHHHHHHhhcC--CCcccCHHH
Q 020876 181 VLADGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVVDELLKRRKETEWFIEGDFDTYVKEIQQ--PYVWGGEPE 258 (320)
Q Consensus 181 IpGDGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vvdyI~~n~d~Fe~FIe~sfeeY~~rM~k--~g~WGG~lE 258 (320)
+..|+|||--|||.+|. .. -.. +-+-|+.|.. +.+.|+..+++ +.+|-|
T Consensus 3 ~sR~NNCLVVAis~~L~----~T----------~e~----l~~~M~An~~--------~i~~y~~W~r~~~~STW~D--- 53 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLG----VT----------LEK----LDNLMQANVS--------TIKKYHTWLRKKRPSTWDD--- 53 (104)
T ss_pred ccCCCCeEeehHHHHhc----ch----------HHH----HHHHHHhhHH--------HHHHHHHHHhcCCCCcHHH---
Confidence 56799999999999985 21 111 1223444433 46778887764 468864
Q ss_pred HHHHHHhcCCCEEEE
Q 020876 259 LLMASHVLKKPIAVF 273 (320)
Q Consensus 259 L~ALA~~l~v~I~Vy 273 (320)
-.++|+.|++.|.|-
T Consensus 54 C~mFA~~LkVsm~vk 68 (104)
T PF05415_consen 54 CRMFADALKVSMQVK 68 (104)
T ss_pred HHHHHHhheeEEEEE
Confidence 578999999999883
No 10
>PRK09784 hypothetical protein; Provisional
Probab=59.71 E-value=7.1 Score=38.07 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=29.1
Q ss_pred cccccccCC-CCCC-ccccchhhhhhcCCcEEEEeCCCCchhhHHHHH
Q 020876 149 EKISKIDGG-GGGD-DLNVKRCEIINERPFKVTGVLADGRCLFRAIAH 194 (320)
Q Consensus 149 ~~~~~~~~e-e~~~-~~~~~~~~~l~~~gl~v~~IpGDGNCLFRAVA~ 194 (320)
|-++.+|.. +-+. +..|+.. .+..|++-.+|.|||-||.|||--
T Consensus 173 pgisdldsgidlsgisfiqse~--n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 173 PGISDLDSGIDLSGISFIQSEI--NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred CCccccccCcCcccchhhHhhh--hhhhCceecccCCCchhHHHHHHH
Confidence 556666665 2222 2333333 345689999999999999999854
No 11
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=30.83 E-value=23 Score=35.91 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred hhhhhccCHHHHHHhhcCCCcccCHHHHHHHHHhcCCCEEEEEeec
Q 020876 232 TEWFIEGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIAVFMVVQ 277 (320)
Q Consensus 232 Fe~FIe~sfeeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~Vy~~d~ 277 (320)
|..++.++|+.|+..+.++.+-|+.+||.+.+.+++.+.+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g 47 (371)
T KOG2605|consen 2 FREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFG 47 (371)
T ss_pred CccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCcc
Confidence 4556778999999999999999999999999999999999987653
No 12
>cd03346 eu_TrpOH Eukaryotic tryptophan hydroxylase (TrpOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tyrosine hydroxylase (TyrOH). TrpOH oxidizes L-tryptophan to 5-hydroxy-L-tryptophan, the rate-limiting step in the biosynthesis of serotonin (5-hydroxytryptamine), a widely distributed hormone and neurotransmitter.
Probab=26.97 E-value=29 Score=34.11 Aligned_cols=111 Identities=9% Similarity=0.088 Sum_probs=66.1
Q ss_pred hcccccccc-----CCCCCCccccchhhhhhcCCcEEEEeCC--CCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHH
Q 020876 147 YEEKISKID-----GGGGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRA 219 (320)
Q Consensus 147 ~~~~~~~~~-----~ee~~~~~~~~~~~~l~~~gl~v~~IpG--DGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq 219 (320)
|++-+..+. .++..+|...-+..+....|++++.|+| ...=||..+|+..+.. ...||.
T Consensus 88 yl~gl~~L~~~~gl~~d~IPql~dvn~~L~~~TGw~~~pV~Gli~~~~Ff~~LA~r~Fp~--------------t~~IR~ 153 (287)
T cd03346 88 YLKNLPLLEKHCGYREDNIPQLEDVSRFLKERTGFTIRPVAGYLSPRDFLAGLAFRVFHC--------------TQYVRH 153 (287)
T ss_pred HHHHHHHHHhccCCCcCCCCCHHHHHHHHHhccCCEEEecCCcCCHHHHHHHHhcCcccc--------------eeeecC
Confidence 445555554 2345566554444444457999999999 8889999999987721 222332
Q ss_pred HHHHHHhhChhhhhhh------h-ccCHHHHHHhhcCCCcccCHHHHHHHHHhcCCCEE
Q 020876 220 QVVDELLKRRKETEWF------I-EGDFDTYVKEIQQPYVWGGEPELLMASHVLKKPIA 271 (320)
Q Consensus 220 ~vvdyI~~n~d~Fe~F------I-e~sfeeY~~rM~k~g~WGG~lEL~ALA~~l~v~I~ 271 (320)
.-.-.-..-||-|-.. + ...|.+|.+.+.+-+-=++.-++.-||++|=-.|+
T Consensus 154 ~~~~~YtpEPDifHEl~GHvPlLadp~FA~f~q~~G~~~l~a~~~~i~~LarlYWfTVE 212 (287)
T cd03346 154 SSDPFYTPEPDTCHELLGHVPLLADPSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE 212 (287)
T ss_pred ccccCCCCCCchHHHHhccchhhcCHHHHHHHHHHHHHhcCCCHHHHHHHhHhhhhhcc
Confidence 2111111134444222 2 24799999987754433466778888888765554
No 13
>PRK10963 hypothetical protein; Provisional
Probab=25.66 E-value=67 Score=29.78 Aligned_cols=17 Identities=29% Similarity=0.079 Sum_probs=14.2
Q ss_pred HHHHHHHhhChhhhhhh
Q 020876 219 AQVVDELLKRRKETEWF 235 (320)
Q Consensus 219 q~vvdyI~~n~d~Fe~F 235 (320)
+.|++|+++|||+|...
T Consensus 6 ~~V~~yL~~~PdFf~~h 22 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRN 22 (223)
T ss_pred HHHHHHHHHCchHHhhC
Confidence 46899999999999554
No 14
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=24.96 E-value=18 Score=34.28 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=68.9
Q ss_pred hhccccccccCC-CCCCccccchhhhhhcCCcEEEEeCC--CCchhhHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHH
Q 020876 146 FYEEKISKIDGG-GGGDDLNVKRCEIINERPFKVTGVLA--DGRCLFRAIAHGACLRSGEEVPDEERQRELADELRAQVV 222 (320)
Q Consensus 146 ~~~~~~~~~~~e-e~~~~~~~~~~~~l~~~gl~v~~IpG--DGNCLFRAVA~qL~~~~G~~~~d~~l~q~~h~eLRq~vv 222 (320)
.|++-+..+.-. +..+|...-+.......|++++.|+| ...=||..+|+..+.. ...||..-.
T Consensus 31 ~yl~gl~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA~r~Fp~--------------t~~iR~~~~ 96 (221)
T cd00361 31 EYLEGLELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLAFRVFPV--------------TQYIRHPEE 96 (221)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHhcCCCce--------------eeeecCcCC
Confidence 345556666533 55666665555555558999999999 8888999999866521 222333222
Q ss_pred HHHhhChhhhhhhh-------ccCHHHHHHhhcCCCcccCH-HHHHHHHHhcCCCEE
Q 020876 223 DELLKRRKETEWFI-------EGDFDTYVKEIQQPYVWGGE-PELLMASHVLKKPIA 271 (320)
Q Consensus 223 dyI~~n~d~Fe~FI-------e~sfeeY~~rM~k~g~WGG~-lEL~ALA~~l~v~I~ 271 (320)
-....-||-|-..+ ...|.+|.+.+.+-+.=+.. -++..||++|=-.|+
T Consensus 97 ~~YtpEPDifHe~~GH~P~L~~p~fAdf~q~~G~~~l~a~~~~~~~~LarlyWfTVE 153 (221)
T cd00361 97 PDYTPEPDIFHELFGHVPLLADPSFADFSQEYGLASLGASDLEEIEKLARLYWFTVE 153 (221)
T ss_pred CCCCCCChhHHHHhccchhhcCHHHHHHHHHHHHHHhCcCCHHHHHHHHHhhhhhcc
Confidence 22223345552222 24799999988876544555 667888888754443
No 15
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=23.91 E-value=68 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=15.1
Q ss_pred CCCCchhhHHHHHHHHh
Q 020876 182 LADGRCLFRAIAHGACL 198 (320)
Q Consensus 182 pGDGNCLFRAVA~qL~~ 198 (320)
|+||+|=+|.|+..++.
T Consensus 5 P~DG~CG~H~i~aI~n~ 21 (108)
T PF05412_consen 5 PGDGSCGWHCIAAIMNH 21 (108)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 78999999999998873
No 16
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=22.30 E-value=6.8 Score=30.65 Aligned_cols=32 Identities=16% Similarity=0.441 Sum_probs=25.1
Q ss_pred hhChhh-hhhhhc-cCHHHHHHhhcCCCcccCHH
Q 020876 226 LKRRKE-TEWFIE-GDFDTYVKEIQQPYVWGGEP 257 (320)
Q Consensus 226 ~~n~d~-Fe~FIe-~sfeeY~~rM~k~g~WGG~l 257 (320)
++|.+- +.-||. .|+|+=+-.|.+++.|||.+
T Consensus 6 R~~~~g~l~~YvpKKDLEE~Vv~~e~~~~WGG~v 39 (67)
T TIGR02934 6 RRNRAGELSAYVPKKDLEEVIVSVEKEELWGGWV 39 (67)
T ss_pred EeCCCCCEEEEEECCcchhheeeeecCccccCEE
Confidence 455554 677786 58999999999999999964
Done!