BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020877
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 98/237 (41%), Gaps = 29/237 (12%)
Query: 37 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIH 96
PPGP WP++GN +G H S A LAR +G + +RLG Q L
Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70
Query: 97 DSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS-------------SVHLFSGK 143
S F++RP + + + + + F Y W++ R+ + S + G
Sbjct: 71 GSAFADRPSFASFR-VVSGGRSMAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGH 129
Query: 144 ALDDYRHVRQEEMAVLTRALAS-AGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGS 202
L + R E +A+L R A A +P L + V N + V G R D
Sbjct: 130 VLSEAR----ELVALLVRGSADGAFLDPRPLTV---VAVANVMSAVCFGCRYSHD----- 177
Query: 203 DPRADEFKSMVVELMVLAGVFNVGDFVPALERL--DLQGVARKMKKLHKRFDVFLSD 257
DP E S E G ++ D +P L+ ++ V R+ ++L++ F F+ D
Sbjct: 178 DPEFRELLSHNEEFGRTVGAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILD 234
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 113/277 (40%), Gaps = 24/277 (8%)
Query: 37 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIH 96
PPGP WP++G++ LG PH +++ +++ +G ++ +R+G Q L
Sbjct: 13 PPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQ 72
Query: 97 DSNFSNRPPNSGAKHIAYNYQDIVFRP-YGPRWRMLRKISSVHLFSGKALDD-------- 147
+F RP I+ N Q + F P GP W R+++ L S D
Sbjct: 73 GDDFKGRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPASSTSCY 131
Query: 148 -YRHVRQE-EMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPR 205
HV +E E+ + T AG N + + + V N + + G R D
Sbjct: 132 LEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRRY--DHNHQELLS 189
Query: 206 ADEFKSMVVELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMN 265
+ E++ G N DF+P L L + K L+++F F+ +++E
Sbjct: 190 LVNLNNNFGEVV---GSGNPADFIPILRYLPNPSL-NAFKDLNEKFYSFMQKMVKEHYKT 245
Query: 266 GRDGGNKLTDLLGTLISLMD----DANGEEKLTETEI 298
G + D+ +LI D N +L++ +I
Sbjct: 246 FEKG--HIRDITDSLIEHCQEKQLDENANVQLSDEKI 280
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 108/259 (41%), Gaps = 26/259 (10%)
Query: 37 PPGPKPWPIVGNLPHLGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIH 96
PP P WP++G++ LG PH +++ +++ +G ++ +R+G Q L
Sbjct: 18 PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQ 77
Query: 97 DSNFSNRPPNSGAKHIAYNYQDIVFRP-YGPRWRMLRKISSVHLFSGKALDD-------- 147
+F RP + I + Q + F GP W R+++ L + D
Sbjct: 78 GDDFKGRPDLYTSTLIT-DGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASSSSCY 136
Query: 148 -YRHVRQEEMAVLTRALA-SAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPR 205
HV +E A+++R AG + ++ + V N +G + G + F +
Sbjct: 137 LEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGAMCFG-QHFPES------- 188
Query: 206 ADEFKSMVV---ELMVLAGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEER 262
+DE S+V E + A N DF P L L + R K ++RF FL ++E
Sbjct: 189 SDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQR-FKAFNQRFLWFLQKTVQEH 247
Query: 263 KMNGRDGGNKLTDLLGTLI 281
+ N + D+ G L
Sbjct: 248 YQDF--DKNSVRDITGALF 264
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 108/251 (43%), Gaps = 14/251 (5%)
Query: 44 PIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNF 100
P+VG+LP L G M H + L + +GP+ +R+G + L +F
Sbjct: 17 PLVGSLPFLPRHGHM-HNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDF 75
Query: 101 SNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDD-YRHVRQEEMAVL 159
S RP + + N + I F G W++ R+++ K D + +E++ L
Sbjct: 76 SGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTL 135
Query: 160 TRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVL 219
LA+ + ++++ + + V N + + F DP + ++ ++
Sbjct: 136 CDMLATHNGQSIDISFPVFVAVTNVISLI-----CFNTSYKNGDPELNVIQNYNEGIIDN 190
Query: 220 AGVFNVGDFVPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKLTDLLGT 279
++ D VP L+ + + + + R D+ L+ ILE K R + +T++L T
Sbjct: 191 LSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDL-LNKILENYKEKFR--SDSITNMLDT 247
Query: 280 LI-SLMDDANG 289
L+ + M+ NG
Sbjct: 248 LMQAKMNSDNG 258
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 19/235 (8%)
Query: 63 LARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAY--NYQDIV 120
L R G + L+L + + L H + ++RPP + + + Q +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 121 FRPYGPRWRMLRKISSVHL----FSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQR 176
YGP WR R+ S L K+L+ + EE A L A A+ P R
Sbjct: 99 LARYGPAWREQRRFSVSTLRNLGLGKKSLEQWV---TEEAACLCAAFANHSGRPF----R 151
Query: 177 LNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVF--NVGDFVPALER 234
N + A+ V+ G DPR + E + F V + VP L
Sbjct: 152 PNGLLDKAVSNVIASLTC-GRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVL-- 208
Query: 235 LDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKLTDLLGTLISLMDDANG 289
L + +A K+ + K F L ++L E +M D DL ++ M+ A G
Sbjct: 209 LHIPALAGKVLRFQKAFLTQLDELLTEHRMTW-DPAQPPRDLTEAFLAEMEKAKG 262
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDY----RHV 151
FS R + D VF+ YG + + + FS L D+ R +
Sbjct: 72 QAEEFSGRGEQATF--------DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 123
Query: 152 R---QEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADE 208
QEE L AL G ++ L+ V N + ++ G R D + E
Sbjct: 124 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF--------DYKDKE 175
Query: 209 FKSMVVELMVLAGVFN 224
F S+ L ++ G+F
Sbjct: 176 FLSL---LRMMLGIFQ 188
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDY----RHV 151
FS R + D VF+ YG + + + FS L D+ R +
Sbjct: 72 QAEEFSGRGEQATF--------DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 123
Query: 152 R---QEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADE 208
QEE L AL G ++ L+ V N + ++ G R D + E
Sbjct: 124 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF--------DYKDKE 175
Query: 209 FKSMVVELMVLAGVFN 224
F S+ L ++ G+F
Sbjct: 176 FLSL---LRMMLGIFQ 188
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDY----RHV 151
FS R + D VF+ YG + + + FS L D+ R +
Sbjct: 72 QAEEFSGRGEQATF--------DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 123
Query: 152 R---QEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADE 208
QEE L AL G ++ L+ V N + ++ G R D + E
Sbjct: 124 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF--------DYKDKE 175
Query: 209 FKSMVVELMVLAGVFN 224
F S+ L ++ G+F
Sbjct: 176 FLSL---LRMMLGIFQ 188
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 27/196 (13%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDY----RHV 151
FS R + D VF+ YG + + + FS L D+ R +
Sbjct: 72 QAEEFSGRGEQATF--------DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 123
Query: 152 R---QEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFRVFGDGTGGSDPRADE 208
QEE L AL G ++ L+ V N + ++ G R D + E
Sbjct: 124 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRF--------DYKDKE 175
Query: 209 FKSMVVELMVLAGVFN 224
F S+ L ++ G+F
Sbjct: 176 FLSL---LRMMLGIFQ 188
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDY----RHV 151
FS R + D VF+ YG + + + FS L D+ R +
Sbjct: 72 QAEEFSGRGEQATF--------DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGI 123
Query: 152 R---QEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L AL G ++ L+ V N + ++ G R
Sbjct: 124 EERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P++GN+ +G +S+ L++ +GP+ L G + L
Sbjct: 13 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 72
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHL----FSGKALDDYRHV 151
FS R A+ + IVF G +W+ +R+ S + L ++++D
Sbjct: 73 LGEEFSGRGIFPLAERANRGF-GIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDR--- 127
Query: 152 RQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L L P + L N + ++ R
Sbjct: 128 VQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKR 169
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 10/162 (6%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P++GN+ +G +S+ L++ +GP+ L G + L
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHL----FSGKALDDYRHV 151
FS R A+ + IVF G +W+ +R+ S + L ++++D
Sbjct: 71 LGEEFSGRGIFPLAERANRGF-GIVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDR--- 125
Query: 152 RQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L L P + L N + ++ R
Sbjct: 126 VQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKR 167
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 10/162 (6%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P++GN+ + +S+ L++ +GP+ L G + L
Sbjct: 13 PPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALID 72
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHL----FSGKALDDYRHV 151
FS R A+ + IVF G RW+ +R+ S + L ++++D
Sbjct: 73 LGEEFSGRGHFPLAERANRGF-GIVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDR--- 127
Query: 152 RQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L L P + L N + ++ R
Sbjct: 128 VQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFQKR 169
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 11/159 (6%)
Query: 37 PPGPKPWPIVGNLPH--LGPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLK 94
PPGP P PI+GNL L +P +S LA+ GP+ L +G + L
Sbjct: 12 PPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALL 70
Query: 95 IHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFS---GKALDDYRHV 151
+ FS R + A H A+ + I+F GP W+ +R+ S L + GK ++ R
Sbjct: 71 DYKDEFSGR-GDLPAFH-AHRDRGIIFN-NGPTWKDIRRFSLTTLRNYGMGKQGNESR-- 125
Query: 152 RQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVML 190
Q E L AL +P + + N + ++
Sbjct: 126 IQREAHFLLEALRKTQGQPFDPTFLIGCAPCNVIADILF 164
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 10/162 (6%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P PI+GN+ + +S ++ +GP+ + G + L
Sbjct: 12 PPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALID 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHL----FSGKALDDYRHV 151
+ FS R + ++ I + G RW+ +R+ S L ++++D
Sbjct: 72 NGEEFSGRGNSPISQRITKGLG--IISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDR--- 126
Query: 152 RQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L L P + L N + V+ R
Sbjct: 127 VQEEAHCLVEELRKTKASPCDPTFILGCAPCNVICSVVFQKR 168
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 88/241 (36%), Gaps = 31/241 (12%)
Query: 63 LARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAY--NYQDIV 120
L R G + L+L + + L H + ++RPP + + + Q +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 121 FRPYGPRWRMLRKISSVHL----FSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQR 176
YGP WR R+ S L K+L+ + EE A L A A+ P R
Sbjct: 99 LARYGPAWREQRRFSVSTLRNLGLGKKSLEQWV---TEEAACLCAAFANHSGRPF----R 151
Query: 177 LNLCVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELM-----VLAGVFN---VGDF 228
N + A+ V+ G DPR + E + L V N V
Sbjct: 152 PNGLLDKAVSNVIASLTC-GRRFEYDDPRFLRLLDLAQEGLKEESGFLREVLNAVPVDRH 210
Query: 229 VPALERLDLQGVARKMKKLHKRFDVFLSDILEERKMNGRDGGNKLTDLLGTLISLMDDAN 288
+PAL A K+ + K F L ++L E +M D DL ++ M+ A
Sbjct: 211 IPAL--------AGKVLRFQKAFLTQLDELLTEHRMTW-DPAQPPRDLTEAFLAEMEKAK 261
Query: 289 G 289
G
Sbjct: 262 G 262
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 11/193 (5%)
Query: 60 IAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDI 119
+ L + GP+ LRLG + + +F+ RP K ++ QDI
Sbjct: 49 LLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKLVSQRCQDI 108
Query: 120 VFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQRLNL 179
Y W+ +K++ L G V Q R AG PV + + +L
Sbjct: 109 SLGDYSLLWKAHKKLTRSALLLGTRSSMEPWVDQLTQEFCERMRVQAGA-PVTIQKEFSL 167
Query: 180 CVVNALGRVMLGFRVFGDGTGGSDPRADEFKSMVVELMVLAGVFNVG--DFVPALERLDL 237
+ ++ + FG+ D F V +LM +++ D VP L
Sbjct: 168 LTCS-----IICYLTFGN---KEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFPN 219
Query: 238 QGVARKMKKLHKR 250
G+ R + + R
Sbjct: 220 PGLWRLKQAIENR 232
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLG 76
PPGP P+PI+GN+ + +S+ + +GP+ + LG
Sbjct: 12 PPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLG 52
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 59/165 (35%), Gaps = 16/165 (9%)
Query: 37 PPGPKPWPIVGNLPHLGPMP-HQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKI 95
PPGP P P +GN L + S+ ++ +GP+ + LG + L
Sbjct: 12 PPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALVD 71
Query: 96 HDSNFSNRPPNSGAKHIAYNYQDIVFRPY------GPRWRMLRKISSVHLFS-GKALDDY 148
FS R + D +F+ Y G R + LR+ S L G
Sbjct: 72 QAEEFSGRGEQATF--------DWLFKGYGVAFSNGERAKQLRRFSIATLRGFGVGKRGI 123
Query: 149 RHVRQEEMAVLTRALASAGTEPVNLAQRLNLCVVNALGRVMLGFR 193
QEE L AL ++ L+ V N + ++ G R
Sbjct: 124 EERIQEEAGFLIDALRGTHGANIDPTFFLSRTVSNVISSIVFGDR 168
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 37 PPGPKPWPIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFL 93
PPGP P P++GNL + G + +S L +G + + LG + L
Sbjct: 12 PPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 69
Query: 94 KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS 135
FS R + I Y ++F G RWR LR+ S
Sbjct: 70 VDQAEAFSGRGKIAVVDPIFQGY-GVIF-ANGERWRALRRFS 109
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 37 PPGPKPWPIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFL 93
PPGP P P++GNL + G + +S L +G + + LG + L
Sbjct: 12 PPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 69
Query: 94 KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS 135
FS R + I Y ++F G RWR LR+ S
Sbjct: 70 VDQAEAFSGRGKIAVVDPIFQGY-GVIF-ANGERWRALRRFS 109
>pdb|3KBC|A Chain A, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|B Chain B, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
pdb|3KBC|C Chain C, Crystal Structure Of Gltph K55c-A364c Mutant Crosslinked
With Divalent Mercury
Length = 425
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 140 FSGKALDDYRHVRQEEMAVLTRALASAGTEPVNLAQRLNLCVV 182
F AL + V Q+ VLT LAS GT V A + LC+V
Sbjct: 324 FIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLCMV 366
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 37 PPGPKPWPIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFL 93
PPGP P P++GNL + G + +S L +G + + LG + L
Sbjct: 12 PPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 69
Query: 94 KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS 135
FS R + I Y ++F G RWR LR+ S
Sbjct: 70 VDQAEAFSGRGKIAVVDPIFQGY-GVIF-ANGERWRALRRFS 109
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 37 PPGPKPWPIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFL 93
PPGP P P++GNL + G + +S L +G + + LG + L
Sbjct: 12 PPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 69
Query: 94 KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS 135
FS R + I Y ++F G RWR LR+ S
Sbjct: 70 VDQAEAFSGRGKIAVVDPIFQGY-GVIF-ANGERWRALRRFS 109
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 37 PPGPKPWPIVGNLPHL---GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFL 93
PPGP P P++GNL + G + +S L +G + + LG + L
Sbjct: 12 PPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREAL 69
Query: 94 KIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKIS 135
FS R + I Y ++F G RWR LR+ S
Sbjct: 70 VDQAEAFSGRGKIAVVDPIFQGY-GVIF-ANGERWRALRRFS 109
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A
Resolution
Length = 441
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 50 PHLGPMPHQSIAGLARTHGPLMY 72
PH+G +IAG + HGPL+Y
Sbjct: 113 PHIGYATCSTIAGEYKLHGPLLY 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,005,309
Number of Sequences: 62578
Number of extensions: 308712
Number of successful extensions: 644
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 31
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)