Query 020879
Match_columns 320
No_of_seqs 46 out of 48
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13829 DUF4191: Domain of un 94.5 0.065 1.4E-06 50.2 5.1 86 207-293 17-105 (224)
2 PF13567 DUF4131: Domain of un 92.2 1.1 2.3E-05 35.2 8.0 19 288-306 75-93 (176)
3 PF10907 DUF2749: Protein of u 90.3 0.12 2.6E-06 40.8 0.9 49 242-292 3-63 (66)
4 PF11151 DUF2929: Protein of u 88.2 1.6 3.5E-05 32.9 5.6 43 216-259 6-48 (57)
5 PF12273 RCR: Chitin synthesis 86.8 0.53 1.1E-05 39.2 2.5 30 241-270 1-31 (130)
6 PF05915 DUF872: Eukaryotic pr 77.9 7.1 0.00015 33.1 6.0 55 215-269 41-106 (115)
7 PF11833 DUF3353: Protein of u 73.8 3 6.5E-05 37.9 2.9 54 210-264 136-191 (194)
8 TIGR02762 TraL_TIGR type IV co 73.8 8.2 0.00018 31.3 5.1 23 212-234 17-39 (95)
9 COG5015 Uncharacterized conser 72.8 3.1 6.7E-05 36.8 2.6 35 265-299 44-79 (132)
10 PF10821 DUF2567: Protein of u 72.2 6.1 0.00013 35.9 4.4 73 216-294 47-121 (167)
11 PF11241 DUF3043: Protein of u 71.9 10 0.00022 34.6 5.7 37 247-283 104-140 (170)
12 PRK01844 hypothetical protein; 71.7 5.2 0.00011 32.2 3.4 34 242-280 6-39 (72)
13 PRK00523 hypothetical protein; 70.7 5.6 0.00012 32.0 3.4 34 242-280 7-40 (72)
14 PF10003 DUF2244: Integral mem 69.2 14 0.0003 31.5 5.8 52 214-266 9-60 (140)
15 PRK10881 putative hydrogenase 68.4 11 0.00024 36.7 5.7 38 193-239 38-77 (394)
16 TIGR03750 conj_TIGR03750 conju 68.4 36 0.00079 29.1 8.0 75 218-299 24-109 (111)
17 PRK14762 membrane protein; Pro 68.3 4.9 0.00011 27.1 2.2 17 215-231 2-18 (27)
18 PRK13823 conjugal transfer pro 67.7 11 0.00024 31.2 4.7 40 223-263 25-64 (94)
19 PF10969 DUF2771: Protein of u 66.9 9.8 0.00021 33.7 4.5 55 243-305 6-60 (161)
20 PF01925 TauE: Sulfite exporte 66.8 10 0.00022 32.9 4.5 50 212-261 60-109 (240)
21 PF15050 SCIMP: SCIMP protein 66.6 6.4 0.00014 34.8 3.3 25 242-266 9-33 (133)
22 PF03100 CcmE: CcmE; InterPro 64.9 5.8 0.00013 33.5 2.6 13 286-298 48-60 (131)
23 KOG1536 Biotin holocarboxylase 64.0 6.9 0.00015 41.7 3.5 41 268-308 469-515 (649)
24 TIGR01116 ATPase-IIA1_Ca sarco 63.4 16 0.00035 39.5 6.2 80 213-293 5-86 (917)
25 PF13779 DUF4175: Domain of un 62.5 15 0.00033 40.1 5.8 60 218-277 10-71 (820)
26 PF06374 NDUF_C2: NADH-ubiquin 61.0 26 0.00056 30.3 5.8 57 222-279 29-96 (117)
27 TIGR03428 ureacarb_perm permea 60.4 15 0.00033 35.8 4.9 32 196-228 230-261 (475)
28 PTZ00382 Variant-specific surf 59.5 4 8.6E-05 33.4 0.7 19 251-269 78-96 (96)
29 PRK08456 flagellar motor prote 59.5 16 0.00034 34.3 4.6 56 221-276 7-69 (257)
30 TIGR00540 hemY_coli hemY prote 59.4 19 0.00042 34.5 5.3 20 245-264 43-62 (409)
31 PF04156 IncA: IncA protein; 58.0 26 0.00056 30.2 5.4 38 231-268 28-65 (191)
32 PF05425 CopD: Copper resistan 56.7 26 0.00057 27.8 4.9 58 213-270 7-69 (105)
33 PF07178 TraL: TraL protein; 56.2 34 0.00074 27.5 5.5 12 273-284 81-92 (95)
34 PF11292 DUF3093: Protein of u 56.2 29 0.00063 30.8 5.5 52 207-261 3-54 (143)
35 PF04246 RseC_MucC: Positive r 56.1 34 0.00074 28.4 5.7 41 222-262 75-115 (135)
36 PRK09109 motC flagellar motor 56.0 23 0.00049 33.1 5.1 56 221-276 7-69 (246)
37 PF05879 RHD3: Root hair defec 55.6 17 0.00038 38.9 4.8 45 216-263 649-693 (742)
38 PRK14992 tetrathionate reducta 55.2 26 0.00056 34.6 5.5 22 218-239 16-37 (335)
39 PF08114 PMP1_2: ATPase proteo 55.1 12 0.00026 27.7 2.5 28 246-273 15-43 (43)
40 PF11846 DUF3366: Domain of un 55.0 42 0.00091 28.9 6.2 57 218-274 20-83 (193)
41 PF14362 DUF4407: Domain of un 53.6 23 0.0005 32.9 4.7 36 227-265 28-64 (301)
42 COG4965 TadB Flp pilus assembl 53.0 29 0.00064 34.2 5.5 61 217-280 81-141 (309)
43 PF01102 Glycophorin_A: Glycop 52.9 16 0.00034 31.6 3.2 8 259-266 83-90 (122)
44 PRK13254 cytochrome c-type bio 52.7 23 0.00051 31.2 4.3 52 241-298 8-61 (148)
45 PF11808 DUF3329: Domain of un 51.5 37 0.00081 27.1 5.0 48 218-275 9-56 (90)
46 PF10112 Halogen_Hydrol: 5-bro 51.1 25 0.00054 31.0 4.3 32 213-244 4-35 (199)
47 PF03672 UPF0154: Uncharacteri 51.1 15 0.00032 29.0 2.6 32 244-280 1-32 (64)
48 PRK01122 potassium-transportin 51.0 51 0.0011 35.4 7.2 20 261-280 85-104 (679)
49 TIGR00996 Mtu_fam_mce virulenc 50.5 12 0.00025 34.3 2.2 26 269-296 31-56 (291)
50 PRK09110 flagellar motor prote 50.4 25 0.00053 33.8 4.5 51 222-272 6-63 (283)
51 PRK10621 hypothetical protein; 50.1 40 0.00086 30.8 5.6 57 206-262 68-124 (266)
52 PF13179 DUF4006: Family of un 49.4 22 0.00047 28.3 3.2 37 244-281 16-52 (66)
53 PRK06743 flagellar motor prote 49.3 27 0.00058 33.2 4.5 44 223-266 3-55 (254)
54 COG1463 Ttg2C ABC-type transpo 49.0 27 0.00058 33.8 4.5 45 252-298 18-66 (359)
55 PF14494 DUF4436: Domain of un 48.9 19 0.00041 34.3 3.4 20 249-268 237-256 (256)
56 PF14023 DUF4239: Protein of u 48.0 50 0.0011 28.9 5.7 13 210-223 132-144 (209)
57 PRK08124 flagellar motor prote 47.5 29 0.00062 32.7 4.4 45 222-266 8-58 (263)
58 PRK10747 putative protoheme IX 47.1 40 0.00087 32.4 5.4 11 222-232 8-18 (398)
59 TIGR03818 MotA1 flagellar moto 47.1 36 0.00078 32.7 5.0 45 222-266 6-56 (282)
60 PRK12482 flagellar motor prote 46.8 32 0.0007 33.3 4.7 46 221-266 5-56 (287)
61 PRK08990 flagellar motor prote 46.4 42 0.00092 31.7 5.3 40 227-266 18-57 (254)
62 PF02495 7kD_coat: 7kD viral c 46.0 28 0.00061 25.9 3.3 19 285-307 30-48 (59)
63 TIGR00906 2A0303 cationic amin 45.5 39 0.00084 34.5 5.2 37 196-233 248-284 (557)
64 PF06645 SPC12: Microsomal sig 45.4 30 0.00065 27.3 3.5 49 215-264 11-59 (76)
65 PF11990 DUF3487: Protein of u 45.4 52 0.0011 28.2 5.2 79 218-302 27-116 (121)
66 PRK01844 hypothetical protein; 45.0 19 0.0004 29.1 2.3 17 218-234 3-19 (72)
67 PF03916 NrfD: Polysulphide re 44.6 55 0.0012 30.4 5.7 33 198-239 2-34 (313)
68 PRK10862 SoxR reducing system 43.7 60 0.0013 28.4 5.5 36 228-263 88-123 (154)
69 PRK10847 hypothetical protein; 43.5 52 0.0011 29.7 5.2 15 218-233 166-180 (219)
70 COG0586 DedA Uncharacterized m 43.3 56 0.0012 29.4 5.4 51 216-267 150-203 (208)
71 PF04304 DUF454: Protein of un 42.8 66 0.0014 24.0 4.9 49 206-256 17-65 (71)
72 PRK10644 arginine:agmatin anti 42.8 39 0.00085 32.5 4.6 42 197-239 209-250 (445)
73 COG5510 Predicted small secret 42.8 31 0.00067 25.7 3.0 26 239-266 2-27 (44)
74 PF12676 DUF3796: Protein of u 42.3 54 0.0012 27.9 4.8 58 208-266 50-108 (118)
75 PRK13165 cytochrome c-type bio 41.6 54 0.0012 29.6 5.0 13 286-298 55-67 (160)
76 cd00780 NTF2 Nuclear transport 41.6 11 0.00025 30.0 0.7 44 258-301 33-89 (119)
77 PF08172 CASP_C: CASP C termin 41.5 11 0.00024 35.5 0.7 24 294-317 209-232 (248)
78 TIGR02302 aProt_lowcomp conser 41.4 43 0.00093 37.1 5.1 47 220-266 26-72 (851)
79 PF01988 VIT1: VIT family; In 40.0 50 0.0011 29.6 4.5 18 218-235 131-148 (213)
80 COG3763 Uncharacterized protei 39.3 42 0.00091 27.2 3.5 33 243-280 7-39 (71)
81 PRK10435 cadB lysine/cadaverin 39.1 80 0.0017 30.5 6.0 28 196-224 204-231 (435)
82 COG5605 Predicted small integr 38.7 68 0.0015 27.7 4.9 31 215-245 46-79 (115)
83 PRK07118 ferredoxin; Validated 38.6 26 0.00055 33.3 2.6 26 216-241 3-28 (280)
84 PF00558 Vpu: Vpu protein; In 38.5 34 0.00074 28.0 2.9 26 241-266 3-28 (81)
85 KOG1016 Predicted DNA helicase 38.3 16 0.00035 41.1 1.4 17 7-23 1199-1215(1387)
86 TIGR01944 rnfB electron transp 37.9 24 0.00051 30.7 2.1 25 216-240 1-25 (165)
87 PF09527 ATPase_gene1: Putativ 37.7 1.2E+02 0.0025 21.8 5.3 41 218-258 7-47 (55)
88 PF01568 Molydop_binding: Moly 37.3 20 0.00043 27.7 1.4 34 261-294 12-53 (110)
89 PRK10714 undecaprenyl phosphat 37.1 74 0.0016 30.1 5.4 18 220-237 237-254 (325)
90 PRK00888 ftsB cell division pr 37.0 37 0.00081 28.1 3.0 22 253-274 9-30 (105)
91 PF07291 MauE: Methylamine uti 36.8 95 0.0021 27.9 5.8 59 213-271 45-104 (184)
92 PRK10755 sensor protein BasS/P 36.8 1.1E+02 0.0023 27.9 6.1 19 218-236 9-27 (356)
93 PRK13707 conjugal transfer pil 36.4 83 0.0018 26.1 5.0 13 272-284 86-98 (101)
94 PF06305 DUF1049: Protein of u 36.2 36 0.00079 24.8 2.6 22 214-235 17-38 (68)
95 PF00924 MS_channel: Mechanose 36.1 53 0.0012 28.0 3.9 44 245-296 27-72 (206)
96 PF05656 DUF805: Protein of un 36.1 1.7E+02 0.0037 23.2 6.6 15 270-284 63-77 (120)
97 PF04226 Transgly_assoc: Trans 36.0 1.2E+02 0.0027 21.9 5.2 40 227-266 6-48 (48)
98 PF02439 Adeno_E3_CR2: Adenovi 36.0 59 0.0013 23.6 3.5 27 242-268 7-33 (38)
99 COG1280 RhtB Putative threonin 35.9 73 0.0016 28.5 4.9 55 214-276 125-181 (208)
100 PF05454 DAG1: Dystroglycan (D 35.9 12 0.00026 36.4 0.0 11 256-266 161-171 (290)
101 TIGR00907 2A0304 amino acid pe 35.8 75 0.0016 30.9 5.3 32 196-228 234-265 (482)
102 PF06295 DUF1043: Protein of u 35.4 25 0.00055 29.8 1.8 15 222-236 3-17 (128)
103 TIGR00751 menA 1,4-dihydroxy-2 35.2 59 0.0013 30.8 4.4 26 214-239 76-101 (284)
104 COG2165 PulG Type II secretory 35.1 45 0.00097 25.9 3.1 22 245-266 15-36 (149)
105 PF07790 DUF1628: Protein of u 34.4 44 0.00096 25.5 2.9 22 242-263 9-30 (80)
106 PF02535 Zip: ZIP Zinc transpo 34.3 86 0.0019 28.3 5.1 53 211-263 225-281 (317)
107 TIGR01523 ATPase-IID_K-Na pota 34.3 68 0.0015 35.8 5.3 53 240-293 79-131 (1053)
108 PRK00523 hypothetical protein; 34.3 36 0.00077 27.5 2.4 16 218-233 4-19 (72)
109 COG2261 Predicted membrane pro 33.9 1.1E+02 0.0023 25.3 5.1 45 221-265 32-80 (82)
110 PF09972 DUF2207: Predicted me 33.9 1.1E+02 0.0024 29.1 6.0 10 268-277 467-476 (511)
111 COG3346 Uncharacterized conser 33.5 1.3E+02 0.0028 29.1 6.4 64 240-305 12-87 (252)
112 PRK13387 1,4-dihydroxy-2-napht 33.2 59 0.0013 31.2 4.1 33 214-247 87-119 (317)
113 COG1291 MotA Flagellar motor c 33.1 24 0.00052 34.2 1.5 50 235-284 27-77 (266)
114 COG5336 Uncharacterized protei 32.9 33 0.00073 29.9 2.2 19 218-236 74-92 (116)
115 TIGR00908 2A0305 ethanolamine 32.9 84 0.0018 30.1 5.1 32 196-228 208-239 (442)
116 PRK14010 potassium-transportin 32.6 1.4E+02 0.0031 32.1 7.1 28 265-292 89-117 (673)
117 PF06724 DUF1206: Domain of Un 32.6 1.7E+02 0.0037 22.0 5.8 52 215-266 7-71 (73)
118 TIGR02661 MauD methylamine deh 32.5 61 0.0013 28.2 3.8 54 239-293 4-67 (189)
119 PRK15385 magnesium transport p 32.5 2.3E+02 0.005 26.9 7.7 75 223-303 63-153 (225)
120 PF15145 DUF4577: Domain of un 32.3 43 0.00094 29.5 2.8 18 243-260 69-86 (128)
121 PF06738 DUF1212: Protein of u 32.2 1E+02 0.0022 26.6 5.1 6 152-157 37-42 (193)
122 PF11239 DUF3040: Protein of u 31.5 1.1E+02 0.0025 23.8 4.8 9 245-253 67-75 (82)
123 COG3763 Uncharacterized protei 31.5 40 0.00087 27.3 2.2 17 218-234 3-19 (71)
124 PRK13150 cytochrome c-type bio 31.5 96 0.0021 28.1 4.9 14 285-298 54-67 (159)
125 TIGR01517 ATPase-IIB_Ca plasma 31.5 1.1E+02 0.0023 33.5 6.1 20 213-232 94-113 (941)
126 cd04483 hOBFC1_like hOBFC1_lik 31.4 52 0.0011 26.3 2.9 25 281-305 59-83 (92)
127 cd04478 RPA2_DBD_D RPA2_DBD_D: 31.1 43 0.00094 25.5 2.4 24 280-303 43-66 (95)
128 COG1585 Membrane protein impli 30.8 2.1E+02 0.0045 24.9 6.7 24 217-240 6-31 (140)
129 PRK05113 electron transport co 30.5 43 0.00093 30.1 2.6 25 216-240 3-27 (191)
130 PRK10617 cytochrome c-type pro 30.4 43 0.00093 31.0 2.6 17 294-310 81-100 (200)
131 TIGR01522 ATPase-IIA2_Ca golgi 30.0 99 0.0022 33.5 5.6 53 236-292 77-129 (884)
132 PF06912 DUF1275: Protein of u 29.8 1E+02 0.0022 27.0 4.7 36 218-253 168-203 (209)
133 COG0730 Predicted permeases [G 29.8 80 0.0017 28.4 4.2 64 201-264 59-122 (258)
134 TIGR03813 put_Glu_GABA_T putat 29.6 79 0.0017 30.8 4.4 33 197-230 212-244 (474)
135 cd04486 YhcR_OBF_like YhcR_OBF 29.2 55 0.0012 25.5 2.7 18 284-301 44-61 (78)
136 PRK07419 1,4-dihydroxy-2-napht 29.0 69 0.0015 30.8 3.8 32 214-246 92-123 (304)
137 TIGR01647 ATPase-IIIA_H plasma 28.5 92 0.002 33.2 5.0 61 211-279 32-92 (755)
138 TIGR03148 cyt_nit_nrfD cytochr 28.4 1.1E+02 0.0023 29.1 4.9 22 218-239 12-33 (316)
139 PF11712 Vma12: Endoplasmic re 28.4 1.8E+02 0.0039 24.8 5.8 29 238-266 108-136 (142)
140 PF02937 COX6C: Cytochrome c o 28.3 77 0.0017 25.2 3.3 35 242-277 20-54 (73)
141 PRK10457 hypothetical protein; 27.8 1.9E+02 0.0041 23.3 5.5 47 218-264 29-80 (82)
142 PLN02922 prenyltransferase 27.5 97 0.0021 29.9 4.5 32 213-245 94-126 (315)
143 PF06053 DUF929: Domain of unk 27.4 90 0.0019 29.9 4.2 35 281-315 36-86 (249)
144 PF12072 DUF3552: Domain of un 27.3 65 0.0014 28.9 3.1 26 217-242 2-27 (201)
145 PF10873 DUF2668: Protein of u 27.2 34 0.00074 31.1 1.4 16 221-236 68-83 (155)
146 TIGR00910 2A0307_GadC glutamat 27.0 1.3E+02 0.0027 30.3 5.4 30 198-228 213-242 (507)
147 PRK12504 putative monovalent c 26.9 1.4E+02 0.003 27.1 5.1 40 218-257 3-42 (178)
148 PF13567 DUF4131: Domain of un 26.6 68 0.0015 25.1 2.8 37 239-275 37-73 (176)
149 COG2215 ABC-type uncharacteriz 26.3 1.9E+02 0.0041 28.9 6.3 35 248-288 137-171 (303)
150 PF13347 MFS_2: MFS/sugar tran 26.2 1.3E+02 0.0028 28.3 5.0 16 297-312 218-233 (428)
151 TIGR00267 conserved hypothetic 26.0 1.2E+02 0.0026 26.8 4.5 16 219-234 89-104 (169)
152 PF05568 ASFV_J13L: African sw 25.9 82 0.0018 29.1 3.5 45 239-283 29-80 (189)
153 PHA02088 hypothetical protein 25.8 41 0.00089 29.3 1.5 51 244-294 5-62 (125)
154 TIGR01476 chlor_syn_BchG bacte 25.7 84 0.0018 29.0 3.6 22 214-235 82-103 (283)
155 PRK11021 putative transporter; 25.7 1.5E+02 0.0032 28.3 5.3 34 196-230 194-227 (410)
156 TIGR02230 ATPase_gene1 F0F1-AT 25.7 1.8E+02 0.0038 24.6 5.2 46 217-264 48-93 (100)
157 TIGR01497 kdpB K+-transporting 25.6 2.3E+02 0.0049 30.7 7.2 21 260-280 85-105 (675)
158 PF13174 TPR_6: Tetratricopept 25.6 33 0.00071 20.6 0.7 14 267-280 20-33 (33)
159 PRK10655 potE putrescine trans 25.6 1.4E+02 0.0029 28.7 5.1 30 197-227 207-236 (438)
160 TIGR02056 ChlG chlorophyll syn 25.5 1.2E+02 0.0025 28.9 4.6 23 214-236 98-120 (306)
161 PRK10249 phenylalanine transpo 25.5 1.1E+02 0.0023 30.1 4.4 28 197-225 227-254 (458)
162 PF06993 DUF1304: Protein of u 25.2 1.8E+02 0.0039 24.5 5.2 41 223-264 52-92 (113)
163 PRK12872 ubiA prenyltransferas 25.2 1.3E+02 0.0029 27.4 4.8 34 215-248 77-110 (285)
164 PRK10747 putative protoheme IX 25.1 1.5E+02 0.0033 28.5 5.4 7 234-240 27-33 (398)
165 TIGR01106 ATPase-IIC_X-K sodiu 25.0 1.7E+02 0.0036 32.4 6.3 38 242-279 104-141 (997)
166 TIGR02120 GspF general secreti 24.8 1.5E+02 0.0032 28.6 5.2 18 207-224 156-173 (399)
167 PF02706 Wzz: Chain length det 24.7 24 0.00053 28.1 0.0 28 235-262 9-36 (152)
168 PRK12874 ubiA prenyltransferas 24.7 2.6E+02 0.0057 26.5 6.8 36 242-278 47-82 (291)
169 PRK13629 threonine/serine tran 24.6 1.4E+02 0.0031 30.7 5.3 63 217-285 22-87 (443)
170 PF14110 DUF4282: Domain of un 24.4 2.2E+02 0.0048 22.7 5.3 19 215-233 15-33 (90)
171 PRK11677 hypothetical protein; 24.2 56 0.0012 28.6 2.1 21 219-239 3-24 (134)
172 PF06826 Asp-Al_Ex: Predicted 24.0 1.8E+02 0.004 25.9 5.3 48 218-265 58-106 (169)
173 PRK00036 primosomal replicatio 24.0 46 0.00099 28.3 1.5 32 283-319 62-93 (107)
174 PRK15122 magnesium-transportin 23.8 1.7E+02 0.0038 32.1 6.1 67 213-279 79-148 (903)
175 PRK07718 fliL flagellar basal 23.4 1.2E+02 0.0027 25.9 4.0 16 285-300 59-74 (142)
176 PLN03094 Substrate binding sub 23.4 1.1E+02 0.0024 30.8 4.2 14 283-296 128-141 (370)
177 PF12597 DUF3767: Protein of u 23.3 1.4E+02 0.0031 25.4 4.3 76 194-271 19-94 (118)
178 TIGR00913 2A0310 amino acid pe 23.2 84 0.0018 30.5 3.3 70 197-267 215-314 (478)
179 TIGR01843 type_I_hlyD type I s 23.2 1.4E+02 0.0031 27.9 4.7 20 285-305 59-78 (423)
180 COG3601 Predicted membrane pro 23.1 1.3E+02 0.0028 28.2 4.3 50 217-267 40-103 (186)
181 PRK12392 bacteriochlorophyll c 23.0 1.5E+02 0.0032 29.0 4.9 23 214-236 94-116 (331)
182 PF07332 DUF1469: Protein of u 22.9 2.9E+02 0.0063 22.1 5.9 25 240-264 70-94 (121)
183 PRK10591 hypothetical protein; 22.9 2.3E+02 0.005 24.0 5.3 51 212-266 6-70 (92)
184 PF15420 Abhydrolase_9_N: Alph 22.9 2.5E+02 0.0054 25.9 6.1 65 213-277 6-84 (208)
185 TIGR01524 ATPase-IIIB_Mg magne 22.8 1.6E+02 0.0036 32.0 5.6 34 240-273 86-119 (867)
186 PRK07718 fliL flagellar basal 22.6 74 0.0016 27.2 2.5 8 255-262 21-28 (142)
187 COG4129 Predicted membrane pro 22.5 92 0.002 30.8 3.4 65 194-263 39-103 (332)
188 PRK06080 1,4-dihydroxy-2-napht 22.4 1.2E+02 0.0027 27.9 4.1 24 214-237 86-109 (293)
189 TIGR02185 Trep_Strep conserved 22.4 1.9E+02 0.0042 25.9 5.2 39 222-261 61-99 (189)
190 PF09323 DUF1980: Domain of un 22.4 2.3E+02 0.0049 24.9 5.5 49 218-266 2-56 (182)
191 PRK06926 flagellar motor prote 22.3 1.7E+02 0.0037 28.2 5.1 32 235-266 32-63 (271)
192 PF13063 DUF3925: Protein of u 22.2 44 0.00096 26.4 1.0 16 300-315 8-24 (66)
193 cd02779 MopB_CT_Arsenite-Ox Th 22.2 49 0.0011 26.3 1.3 36 259-294 12-56 (115)
194 PF05478 Prominin: Prominin; 21.8 1.9E+02 0.0041 31.3 5.8 43 234-276 461-509 (806)
195 PF06679 DUF1180: Protein of u 21.8 89 0.0019 28.3 2.9 23 246-268 99-121 (163)
196 MTH00214 ND6 NADH dehydrogenas 21.6 2E+02 0.0043 25.7 5.0 19 228-246 11-29 (168)
197 COG1766 fliF Flagellar basal b 21.4 66 0.0014 33.9 2.3 28 236-263 19-46 (545)
198 TIGR00911 2A0308 L-type amino 21.4 1.5E+02 0.0032 29.2 4.6 34 197-231 253-286 (501)
199 PF14575 EphA2_TM: Ephrin type 21.3 1.2E+02 0.0025 23.9 3.2 12 258-269 17-28 (75)
200 PRK10334 mechanosensitive chan 21.3 2.3E+02 0.0049 27.0 5.7 18 283-301 128-145 (286)
201 PF12805 FUSC-like: FUSC-like 21.3 1.7E+02 0.0037 27.1 4.7 23 237-259 18-40 (284)
202 PRK12869 ubiA protoheme IX far 21.3 2.6E+02 0.0057 26.1 6.0 42 244-289 38-79 (279)
203 PF12725 DUF3810: Protein of u 21.3 2.4E+02 0.0053 27.4 5.9 62 213-274 21-88 (318)
204 PF01184 Grp1_Fun34_YaaH: GPR1 21.2 1.6E+02 0.0035 26.8 4.5 19 245-263 167-185 (211)
205 TIGR01625 YidE_YbjL_dupl AspT/ 21.1 1.9E+02 0.0041 25.5 4.7 38 219-256 59-98 (154)
206 PRK07193 fliF flagellar MS-rin 21.0 88 0.0019 32.8 3.1 27 236-262 22-48 (552)
207 COG1620 LldP L-lactate permeas 21.0 2.3E+02 0.005 30.2 6.0 69 218-288 210-281 (522)
208 PRK15049 L-asparagine permease 20.8 3E+02 0.0064 27.6 6.6 31 255-287 459-489 (499)
209 MTH00213 ND6 NADH dehydrogenas 20.7 1.6E+02 0.0034 28.6 4.4 50 212-261 22-74 (239)
210 PF07344 Amastin: Amastin surf 20.6 2.5E+02 0.0053 24.3 5.3 40 225-264 76-115 (155)
211 PF09990 DUF2231: Predicted me 20.6 3.1E+02 0.0068 21.7 5.5 13 256-268 55-67 (104)
212 PRK00068 hypothetical protein; 20.5 1.9E+02 0.0042 32.8 5.7 31 229-259 269-299 (970)
213 TIGR02916 PEP_his_kin putative 20.5 2.6E+02 0.0057 28.8 6.3 24 205-228 216-239 (679)
214 TIGR01654 bact_immun_7tm bacte 20.5 1.9E+02 0.0041 30.5 5.4 40 212-254 617-656 (679)
215 PRK10573 type IV pilin biogene 20.3 1.4E+02 0.003 28.8 4.0 10 269-278 245-254 (399)
216 PF12648 TcpE: TcpE family 20.3 2.8E+02 0.006 22.5 5.2 9 267-275 81-89 (108)
217 PRK13664 hypothetical protein; 20.2 87 0.0019 24.8 2.2 10 270-279 32-41 (62)
218 PRK11513 cytochrome b561; Prov 20.1 1.3E+02 0.0029 26.4 3.6 53 214-267 9-64 (176)
219 PF07214 DUF1418: Protein of u 20.1 2.9E+02 0.0062 23.5 5.4 49 212-266 6-70 (96)
220 cd04857 Peptidases_S8_Tripepti 20.0 82 0.0018 31.9 2.6 34 269-303 9-61 (412)
No 1
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=94.47 E-value=0.065 Score=50.17 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=63.1
Q ss_pred ccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc---ccc
Q 020879 207 YSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT---DLR 283 (320)
Q Consensus 207 ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa---dLR 283 (320)
|.+-+.--+.+.|.+++.|+..++++..|-..++++++++++++++++++|+++.. .+-.|+...=++.-|-| .|.
T Consensus 17 y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~-rra~ra~Y~qieGqpGAa~avL~ 95 (224)
T PF13829_consen 17 YKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLS-RRAQRAAYAQIEGQPGAAGAVLD 95 (224)
T ss_pred HHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHH
Confidence 44433333445888888888888888888888899999999999999999988764 34466677777777776 566
Q ss_pred cCCCCcEEEE
Q 020879 284 TAKSGQFVKV 293 (320)
Q Consensus 284 ~AkdGQyVKV 293 (320)
+++.|=.|+=
T Consensus 96 ~lr~~W~~~~ 105 (224)
T PF13829_consen 96 NLRRGWRVTE 105 (224)
T ss_pred hhcCCcccCC
Confidence 6666655543
No 2
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=92.25 E-value=1.1 Score=35.24 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=13.5
Q ss_pred CcEEEEeEEEEeeecCcch
Q 020879 288 GQFVKVTGVCNSTYSNRNF 306 (320)
Q Consensus 288 GQyVKVTGVVTC~~~~~~~ 306 (320)
++.|.++|+|+-.-...+.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~ 93 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGR 93 (176)
T ss_pred CceEEEEEEEcccccccCc
Confidence 8888899988766544433
No 3
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=90.29 E-value=0.12 Score=40.82 Aligned_cols=49 Identities=29% Similarity=0.395 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcc------------hhhhhhhhcCCCcccccCCCCcEEE
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGR------------KAITDFISCHPDTDLRTAKSGQFVK 292 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgr------------r~l~~Fv~ryPDadLR~AkdGQyVK 292 (320)
..+||++++++++.++...|.++..+ ..=+.|+.. |.|||+.++||..|
T Consensus 3 ~~viIaL~~avaa~a~~atwviVq~~~a~~p~s~eeQr~~re~ff~~--~~~l~~i~~gqem~ 63 (66)
T PF10907_consen 3 RRVIIALVVAVAAAAGAATWVIVQPRPAGNPASSEEQRAHREKFFGG--DKDLRDIRGGQEMK 63 (66)
T ss_pred cchhHHHHHHHHhhhceeEEEEECCCCCCCCCChHHHHHHHHHHcCC--CCCCCCCCCCcccC
Confidence 34577777778888999999877664 234578865 56789999999765
No 4
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=88.17 E-value=1.6 Score=32.87 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHH
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIF 259 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Vaalf 259 (320)
.+.|.+++..++|+++++.--+. -|..--.++.++|+.+++++
T Consensus 6 t~fWs~il~~vvgyI~ssL~~~~-~n~~~~~Ii~vi~~i~~~~~ 48 (57)
T PF11151_consen 6 TFFWSFILGEVVGYIGSSLTGVT-YNFTTAAIIAVIFGIIVANI 48 (57)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHHHHHHH
Confidence 46899999999999999987664 44555555555555555544
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=86.77 E-value=0.53 Score=39.22 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH-Hhhhcchhh
Q 020879 241 NPILLIVVLVLFAVIAAIFIW-NTCWGRKAI 270 (320)
Q Consensus 241 naiLLivV~~lf~~VaalfiW-N~~wgrr~l 270 (320)
+|+|+++++++|.+++++++| |-.+.|||+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~G~ 31 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRRGL 31 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 466666655555555555554 555556654
No 6
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=77.86 E-value=7.1 Score=33.10 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHH---Hhhhhhhhhhc------cchHHHHHHHHHH--HHHHHHHHHHhhhcchh
Q 020879 215 KPVLWLVILIFVMG---FIAGGFILGAV------HNPILLIVVLVLF--AVIAAIFIWNTCWGRKA 269 (320)
Q Consensus 215 k~ilW~villf~mG---liaG~FiL~AV------hnaiLLivV~~lf--~~VaalfiWN~~wgrr~ 269 (320)
.-.+++.+.||+.| ++.|.+++..- |.+.+||+-..+| ++=...++|.++.|+||
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~G 106 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKG 106 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCC
Confidence 44567777777777 45566655443 4555555444444 34456788888888776
No 7
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=73.81 E-value=3 Score=37.95 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=35.1
Q ss_pred cccCCchhHHHHHHHHHHHHhhhhhhhhhccchHH--HHHHHHHHHHHHHHHHHHhh
Q 020879 210 RKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPIL--LIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 210 r~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiL--LivV~~lf~~VaalfiWN~~ 264 (320)
.++|=|+++|.+..| +.|+++|+++...+...++ ..-.-.+.+.++.+++|=.|
T Consensus 136 ~~~~~rA~~~~~~~L-~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s 191 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGL-VVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLVS 191 (194)
T ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345778999999887 8899999999877755442 22223334444445555443
No 8
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=73.79 E-value=8.2 Score=31.33 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=12.4
Q ss_pred cCCchhHHHHHHHHHHHHhhhhh
Q 020879 212 NFPKPVLWLVILIFVMGFIAGGF 234 (320)
Q Consensus 212 ~~Pk~ilW~villf~mGliaG~F 234 (320)
.++-.-+-++++.|++|+++|-+
T Consensus 17 g~t~DE~i~~~~~~~~Gi~~~~~ 39 (95)
T TIGR02762 17 GLPLDEFLPGATLFGIGILSGKA 39 (95)
T ss_pred EeeHHHHHHHHHHHHHHHHHhhH
Confidence 35555554455555666665543
No 9
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=72.83 E-value=3.1 Score=36.76 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.0
Q ss_pred hcchhhhhhhhcCCCccccc-CCCCcEEEEeEEEEe
Q 020879 265 WGRKAITDFISCHPDTDLRT-AKSGQFVKVTGVCNS 299 (320)
Q Consensus 265 wgrr~l~~Fv~ryPDadLR~-AkdGQyVKVTGVVTC 299 (320)
...+++..=|..|||.++-+ +||||+|.++|-++-
T Consensus 44 antK~~yKqik~np~vefcg~~kdg~~vrlrg~a~f 79 (132)
T COG5015 44 ANTKPYYKQIKKNPEVEFCGMDKDGVMVRLRGRAEF 79 (132)
T ss_pred CCChHHHHHHhhCCCeEEEEecCCceEEEEeeeEEe
Confidence 34678889999999999998 899999999999874
No 10
>PF10821 DUF2567: Protein of unknown function (DUF2567); InterPro: IPR021213 This is a bacterial family of proteins with unknown function.
Probab=72.15 E-value=6.1 Score=35.86 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHhhhh--hhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCcEEEE
Q 020879 216 PVLWLVILIFVMGFIAGG--FILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKV 293 (320)
Q Consensus 216 ~ilW~villf~mGliaG~--FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQyVKV 293 (320)
...|.+.+.++.|++++. +.+=. |+=.++++.+++=.++++.+.|-+= ..+-+ .||||-|+++++-+|-=+|
T Consensus 47 a~a~f~~l~lv~Gvvaav~~W~~R~-~RGP~~~~~l~~Gsv~aa~lA~~vG---~~va~--~r~~~~d~~~~P~~~~~~v 120 (167)
T PF10821_consen 47 ADALFVLLGLVLGVVAAVAVWLWRR-RRGPVMVLALAVGSVAAAALAARVG---AWVAR--LRYPDPDFDAAPVGATPRV 120 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHH---HHHHH--HhcCCCccccCCCCCCccc
Confidence 447778888888877663 33332 3444455555555666666666432 12222 4899999998887775444
Q ss_pred e
Q 020879 294 T 294 (320)
Q Consensus 294 T 294 (320)
.
T Consensus 121 ~ 121 (167)
T PF10821_consen 121 G 121 (167)
T ss_pred c
Confidence 4
No 11
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=71.92 E-value=10 Score=34.55 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccc
Q 020879 247 VVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLR 283 (320)
Q Consensus 247 vV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR 283 (320)
+..++.+++++++|.-++-+++-=....++|||++-.
T Consensus 104 ~~~~~~~~~~~~iid~~~l~r~vkk~v~~kFp~~~~~ 140 (170)
T PF11241_consen 104 VTLAMYVLLLLVIIDGVILGRRVKKRVAEKFPDTTES 140 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 3334444455555555555666666778899995543
No 12
>PRK01844 hypothetical protein; Provisional
Probab=71.66 E-value=5.2 Score=32.19 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
||+|++++.+.++|..+|+ .|+-++.+++..|-.
T Consensus 6 ~I~l~I~~li~G~~~Gff~-----ark~~~k~lk~NPpi 39 (72)
T PRK01844 6 GILVGVVALVAGVALGFFI-----ARKYMMNYLQKNPPI 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCC
Confidence 3455555666666666654 578889999998765
No 13
>PRK00523 hypothetical protein; Provisional
Probab=70.73 E-value=5.6 Score=32.02 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
||+|++++.+.++|..+|+ .|+-++.+++..|-.
T Consensus 7 ~I~l~i~~li~G~~~Gffi-----ark~~~k~l~~NPpi 40 (72)
T PRK00523 7 ALGLGIPLLIVGGIIGYFV-----SKKMFKKQIRENPPI 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCcCC
Confidence 5666677777777777765 578889999988865
No 14
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=69.19 E-value=14 Score=31.47 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=34.0
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
|+..+|+++.++++-++++...+. .-.|.+|.-.++-+++++..|-+|..++
T Consensus 9 ~~g~~~~~~~~~~~~~~~a~~f~~-~GaW~Vl~F~glev~~l~~a~~~~~r~~ 60 (140)
T PF10003_consen 9 PRGFLIFIAILAAVSLIIAIAFLL-MGAWPVLPFAGLEVLALWYAFRRNYRHA 60 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455677777777666544433322 2338888888888888888888886443
No 15
>PRK10881 putative hydrogenase 2 b cytochrome subunit; Provisional
Probab=68.42 E-value=11 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.526 Sum_probs=27.2
Q ss_pred cccc-cccccccCccccccccCCchhHHHHH-HHHHHHHhhhhhhhhhc
Q 020879 193 AQNQ-AVTTITQEDDYSFRKNFPKPVLWLVI-LIFVMGFIAGGFILGAV 239 (320)
Q Consensus 193 ~~n~-AVt~L~~~~~ysfr~~~Pk~ilW~vi-llf~mGliaG~FiL~AV 239 (320)
.++- +||++|++.-.+ +|... +++.+|+.+|+|++++.
T Consensus 38 ~~Glg~vtg~~~~~~WG---------l~I~~y~~~~vglaag~~~is~~ 77 (394)
T PRK10881 38 VFGLGSVSNLNGGYPWG---------IWIAFDVLIGTGFACGGWALAWL 77 (394)
T ss_pred HhcchhhcCCCCCCCch---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3465 699998874333 56665 55778999999998863
No 16
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=68.36 E-value=36 Score=29.11 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc--c---------hhhhhhhhcCCCcccccCC
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG--R---------KAITDFISCHPDTDLRTAK 286 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg--r---------r~l~~Fv~ryPDadLR~Ak 286 (320)
.|++.+=+++|+++|..+..... .+.++-+++++++++++++.-..-. + |-++.+.++++ ..
T Consensus 24 ~~~~~~~~~~gl~~g~~l~~~~~-~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~~~~~~~~------l~ 96 (111)
T TIGR03750 24 GVAAGVGLAAGLVLGLLLALLAG-PWALIPTGALLGPILVVLIGGKLLARLKRGKPEGYLYRKLEWKLARLG------LG 96 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHHHHHHHcC------CC
Confidence 45566667888888877544444 6777888888888888887654322 1 23444445544 24
Q ss_pred CCcEEEEeEEEEe
Q 020879 287 SGQFVKVTGVCNS 299 (320)
Q Consensus 287 dGQyVKVTGVVTC 299 (320)
.-+||.-+|.=+|
T Consensus 97 ~~~lI~~sg~W~~ 109 (111)
T TIGR03750 97 RHRLILRSGGWSL 109 (111)
T ss_pred CCCeEEEecceee
Confidence 5677777776443
No 17
>PRK14762 membrane protein; Provisional
Probab=68.32 E-value=4.9 Score=27.08 Aligned_cols=17 Identities=41% Similarity=1.107 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHhh
Q 020879 215 KPVLWLVILIFVMGFIA 231 (320)
Q Consensus 215 k~ilW~villf~mGlia 231 (320)
|.++|++..+|..||++
T Consensus 2 ki~lw~i~iifligllv 18 (27)
T PRK14762 2 KIILWAVLIIFLIGLLV 18 (27)
T ss_pred eeHHHHHHHHHHHHHHH
Confidence 56899999999999653
No 18
>PRK13823 conjugal transfer protein TrbD; Provisional
Probab=67.68 E-value=11 Score=31.20 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=27.2
Q ss_pred HHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 020879 223 LIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 223 llf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~ 263 (320)
++++.|+++++++++. ++|+-.++.+++..+.-.++.|=+
T Consensus 25 l~i~~g~la~~l~~g~-~~~~a~~~gl~lw~v~h~~l~~mA 64 (94)
T PRK13823 25 LVMFSGLLAGILIFVA-QTWRAALFGIALWFGALFALRLMA 64 (94)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556889999988887 777655555555555666666654
No 19
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=66.89 E-value=9.8 Score=33.70 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCcEEEEeEEEEeeecCcc
Q 020879 243 ILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKVTGVCNSTYSNRN 305 (320)
Q Consensus 243 iLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQyVKVTGVVTC~~~~~~ 305 (320)
+|+++++++++++++...||...+.. .+.| ++.-.-||++++|.=.-.|..-+.+
T Consensus 6 ~i~avvvV~~~a~~g~~~~~~~~~~~------p~~p--~It~~s~g~~~~V~P~~~Cd~~~~~ 60 (161)
T PF10969_consen 6 LIAAVVVVVAAAVVGVGWWQLRRGSD------PQDP--EITAYSDGELVEVGPYQYCDLDLED 60 (161)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCC------CCCc--EEEEEECCcEEEECCeeeecCCCCC
Confidence 44455666666666666788643321 2223 4444579999999988888776653
No 20
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=66.83 E-value=10 Score=32.95 Aligned_cols=50 Identities=16% Similarity=0.383 Sum_probs=38.5
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020879 212 NFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIW 261 (320)
Q Consensus 212 ~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiW 261 (320)
++.+..++.+++..++|..+|++++..+-..++.+++.++..+.+...++
T Consensus 60 ~i~~~~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~ 109 (240)
T PF01925_consen 60 NIDWKIVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLL 109 (240)
T ss_pred ccchhhhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHh
Confidence 37777788888888999999999999888777777776666555555554
No 21
>PF15050 SCIMP: SCIMP protein
Probab=66.60 E-value=6.4 Score=34.80 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wg 266 (320)
||+|+|+.+++..+..|+++-+|++
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988875
No 22
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=64.87 E-value=5.8 Score=33.49 Aligned_cols=13 Identities=38% Similarity=0.554 Sum_probs=11.2
Q ss_pred CCCcEEEEeEEEE
Q 020879 286 KSGQFVKVTGVCN 298 (320)
Q Consensus 286 kdGQyVKVTGVVT 298 (320)
+.||.|+|-|.|.
T Consensus 48 ~~~~~vrv~G~V~ 60 (131)
T PF03100_consen 48 KVGRKVRVGGLVV 60 (131)
T ss_dssp -TTSEEEEEEEEE
T ss_pred cCCceEEEeeEEc
Confidence 4799999999995
No 23
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism]
Probab=64.04 E-value=6.9 Score=41.75 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=31.9
Q ss_pred hhhhhhhhcCCCccccc-CCCC----cEEEEeEE-EEeeecCcchhh
Q 020879 268 KAITDFISCHPDTDLRT-AKSG----QFVKVTGV-CNSTYSNRNFFV 308 (320)
Q Consensus 268 r~l~~Fv~ryPDadLR~-AkdG----QyVKVTGV-VTC~~~~~~~~~ 308 (320)
+++.+++..|||..+|- -++. -|.||.|+ |||||-+..|.|
T Consensus 469 v~~~~~~pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~f~v 515 (649)
T KOG1536|consen 469 VEAVRYAPGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNKFNV 515 (649)
T ss_pred HHHHhcCCCCCCCceeeecCccceeeeccccceEEEEeeecCceEEE
Confidence 46789999999999986 1222 27899996 899999987754
No 24
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=63.39 E-value=16 Score=39.53 Aligned_cols=80 Identities=16% Similarity=0.319 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHHHHHhhhhhh--hhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCcE
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFI--LGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQF 290 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~Fi--L~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQy 290 (320)
|-.+++|++++..+.-|+.|... --...+|+.-+++++++.+.+++-.|.-.+.++.+..+-+..|+. -+..+||+.
T Consensus 5 f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~-~~ViRdg~~ 83 (917)
T TIGR01116 5 FEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEH-AKVLRDGRW 83 (917)
T ss_pred HhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-eEEEECCEE
Confidence 44556666666666666665332 112346655566666666677777888888888888877765553 233345665
Q ss_pred EEE
Q 020879 291 VKV 293 (320)
Q Consensus 291 VKV 293 (320)
++|
T Consensus 84 ~~I 86 (917)
T TIGR01116 84 SVI 86 (917)
T ss_pred EEE
Confidence 544
No 25
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=62.54 E-value=15 Score=40.13 Aligned_cols=60 Identities=15% Similarity=-0.001 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-ccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhcC
Q 020879 218 LWLVILIFVMGFIAGGFILGA-VHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISCH 277 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~A-VhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~ry 277 (320)
+|+|+.+|+.-..+|.|.+.. +-.|++|+++++++++.+++-+|...|= +.++++=|++-
T Consensus 10 ~~~v~~lflal~~lGl~~~lp~~~~~~~l~~~~~a~~~al~~~lrrfr~Pt~~ea~~RLe~~ 71 (820)
T PF13779_consen 10 LLSVLALFLALSWLGLWDLLPDWLRWALLAAFAAAALAALVRGLRRFRWPTRAEALRRLERA 71 (820)
T ss_pred HHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHhhh
Confidence 677777777777788877653 3344455544444444444556666665 44555555543
No 26
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=60.97 E-value=26 Score=30.32 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhh--------hh-hhccchHHHHHHHHHHHHHHHHHHHHhhh--cchhhhhhhhcCCC
Q 020879 222 ILIFVMGFIAGGF--------IL-GAVHNPILLIVVLVLFAVIAAIFIWNTCW--GRKAITDFISCHPD 279 (320)
Q Consensus 222 illf~mGliaG~F--------iL-~AVhnaiLLivV~~lf~~VaalfiWN~~w--grr~l~~Fv~ryPD 279 (320)
+.+..+|+.++-+ ++ +.||+-||++.++..++-.+.= .+|... ..+.++.||+.+|+
T Consensus 29 ~~~g~~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k-~~n~~~A~rD~~m~~YI~lHPE 96 (117)
T PF06374_consen 29 IWLGFLGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITK-YRNYYYAERDADMRHYIKLHPE 96 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHHHHhCcc
Confidence 5555567666654 24 6688888888777766654332 344433 37779999999997
No 27
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=60.36 E-value=15 Score=35.78 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=23.4
Q ss_pred ccccccccCccccccccCCchhHHHHHHHHHHH
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILIFVMG 228 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mG 228 (320)
.+++.+.+|.+ .-+|++||++++.+++.++++
T Consensus 230 e~~~~~aeE~k-nP~r~iPrai~~s~~i~~~~~ 261 (475)
T TIGR03428 230 GSAGELSEETK-NPRRVAPRTILTALSVSALGG 261 (475)
T ss_pred chHHHHHHHhc-CcchhhhHHHHHHHHHHHHHH
Confidence 34566666644 458899999999998776655
No 28
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=59.54 E-value=4 Score=33.39 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhcchh
Q 020879 251 LFAVIAAIFIWNTCWGRKA 269 (320)
Q Consensus 251 lf~~VaalfiWN~~wgrr~ 269 (320)
+++++++|+.|-.+++||+
T Consensus 78 ~v~~lv~~l~w~f~~r~ka 96 (96)
T PTZ00382 78 VVGGLVGFLCWWFVCRGKA 96 (96)
T ss_pred HHHHHHHHHhheeEEeecC
Confidence 3444455566777777664
No 29
>PRK08456 flagellar motor protein MotA; Validated
Probab=59.51 E-value=16 Score=34.28 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhc
Q 020879 221 VILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISC 276 (320)
Q Consensus 221 villf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~r 276 (320)
+-+++++++++++|++ .-|+=+.++||+++-++++.+-+-|+..+. -+.+...+++
T Consensus 7 iG~~~~~~~i~~~~~~~gg~~~~~~~~~~~~IV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (257)
T PRK08456 7 LGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKN 69 (257)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHhhHhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 3445555555555554 348888999999999999999888888876 4445555533
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=59.44 E-value=19 Score=34.48 Aligned_cols=20 Identities=5% Similarity=-0.022 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020879 245 LIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~ 264 (320)
++++++++++++.+++|.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~l~ 62 (409)
T TIGR00540 43 GLAIFFIIALAIIFAFEWGL 62 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555554
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=57.95 E-value=26 Score=30.19 Aligned_cols=38 Identities=26% Similarity=0.045 Sum_probs=27.0
Q ss_pred hhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020879 231 AGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 231 aG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr 268 (320)
++++-+.++...++-++++++.++.+++-+-+++..++
T Consensus 28 ~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~ 65 (191)
T PF04156_consen 28 LFISGLGALISFILGIALLALGVVLLSLGLLCLLSKRP 65 (191)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33333777888888888888777777777777766643
No 32
>PF05425 CopD: Copper resistance protein D; InterPro: IPR008457 Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm [].; GO: 0016021 integral to membrane
Probab=56.70 E-value=26 Score=27.80 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhh---hccch--HHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFILG---AVHNP--ILLIVVLVLFAVIAAIFIWNTCWGRKAI 270 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~FiL~---AVhna--iLLivV~~lf~~VaalfiWN~~wgrr~l 270 (320)
|.+...|+++++++.|+..+...+. -++++ .+|.+=.+++..++++-.+|-.+-.+.+
T Consensus 7 Fs~~a~~av~~l~~TG~~~a~~~~~~~~l~~t~yG~~Ll~K~~L~~~~l~l~~~~~~~~~p~l 69 (105)
T PF05425_consen 7 FSWIAWAAVAVLVVTGLVMAWLRLGFDALFTTPYGRLLLVKLALVLLMLALAAYNRFRLIPRL 69 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999888766654 12222 4677778888889999999987555444
No 33
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=56.24 E-value=34 Score=27.46 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.4
Q ss_pred hhhcCCCccccc
Q 020879 273 FISCHPDTDLRT 284 (320)
Q Consensus 273 Fv~ryPDadLR~ 284 (320)
+++++||+..|.
T Consensus 81 ~~k~~P~S~~R~ 92 (95)
T PF07178_consen 81 FFKRTPPSFIRY 92 (95)
T ss_pred ccccCcCHHHhh
Confidence 468899998874
No 34
>PF11292 DUF3093: Protein of unknown function (DUF3093); InterPro: IPR021443 This family of proteins with unknown function appears to be restricted to Actinobacteria. Some members are annotated as alanine rich membrane proteins however this cannot be confirmed.
Probab=56.20 E-value=29 Score=30.76 Aligned_cols=52 Identities=25% Similarity=0.228 Sum_probs=27.2
Q ss_pred ccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020879 207 YSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIW 261 (320)
Q Consensus 207 ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiW 261 (320)
|+=|.-.|.- .|.+ .+++.++++..+.+..-.=+.. ++.++++++++++++|
T Consensus 3 Y~ERL~~p~~-wW~~-~~~~~~~~~~~v~~~~~~~~~~-i~~~~~~~~~~~~l~~ 54 (143)
T PF11292_consen 3 YRERLWVPWW-WWLA-AAAVAALLAAEVVLGPPSLWAW-IPYAVVVAVAVWALLS 54 (143)
T ss_pred cccccCCCHH-HHHH-HHHHHHHHHHhhhcCcchHHHH-HHHHHHHHHHHHHHHH
Confidence 5556555554 4544 4444677777766655543333 4444444444444444
No 35
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=56.08 E-value=34 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 020879 222 ILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWN 262 (320)
Q Consensus 222 illf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN 262 (320)
-++=.++|++|+++..++-...+..+++.+.++++++++.-
T Consensus 75 Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 75 YLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667888887777776677777777777776666543
No 36
>PRK09109 motC flagellar motor protein; Reviewed
Probab=55.97 E-value=23 Score=33.06 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhc
Q 020879 221 VILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISC 276 (320)
Q Consensus 221 villf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~r 276 (320)
+-++++++.++++|++ .-++=+.++||+++-++++.+-+-|+.++. -+.+..++++
T Consensus 7 iG~~~~~~~v~~~~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~~~~~~~~~f~~ 69 (246)
T PRK09109 7 IGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFP 69 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 3445555566666555 337888899999999999999999999886 4445455543
No 37
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=55.57 E-value=17 Score=38.87 Aligned_cols=45 Identities=20% Similarity=0.492 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~ 263 (320)
+=+|+.++|++.|+= =+++..+||++|++++++++++.+++.-|.
T Consensus 649 iP~w~~~ll~vLGwN---E~m~vLrnPl~~~l~li~~~~~~~~~~l~l 693 (742)
T PF05879_consen 649 IPPWMYLLLLVLGWN---EFMAVLRNPLYFTLLLILGGGFYVLYQLNL 693 (742)
T ss_pred CCHHHHHHHHHHhHH---HHHHHHHChHHHHHHHHHHHHHHHHHHhcc
Confidence 337888888877742 236778999999999888877666664444
No 38
>PRK14992 tetrathionate reductase subunit C; Provisional
Probab=55.20 E-value=26 Score=34.57 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhc
Q 020879 218 LWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AV 239 (320)
.|+++-+|..|+.+|+|++++.
T Consensus 16 ~~iv~YlFl~GlaaGa~lla~~ 37 (335)
T PRK14992 16 PWAVQYFFFIGIAACAALFACY 37 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999976
No 39
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=55.08 E-value=12 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-chhhhhh
Q 020879 246 IVVLVLFAVIAAIFIWNTCWG-RKAITDF 273 (320)
Q Consensus 246 ivV~~lf~~VaalfiWN~~wg-rr~l~~F 273 (320)
+.|.++-..++++|+++-|-. +|++.+|
T Consensus 15 ~lVglv~i~iva~~iYRKw~aRkr~l~rf 43 (43)
T PF08114_consen 15 CLVGLVGIGIVALFIYRKWQARKRALQRF 43 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444455677888887766 6677776
No 40
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.01 E-value=42 Score=28.89 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhhhhhh--hhcc-----chHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 020879 218 LWLVILIFVMGFIAGGFIL--GAVH-----NPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFI 274 (320)
Q Consensus 218 lW~villf~mGliaG~FiL--~AVh-----naiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv 274 (320)
+|-...++.++|+.|..+- ..++ -...|.++++++++++..++|+....-+.+..|.
T Consensus 20 L~ysyfl~~~~l~Lg~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~ 83 (193)
T PF11846_consen 20 LWYSYFLWPFALLLGLLPDPARRLRRIPRSLAFALRAAALLIALAALGFMLTDYHTNEQLTRFE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777777777777665 2222 2345556777888888888888887777676666
No 41
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.59 E-value=23 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred HHHhhhhhh-hhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 020879 227 MGFIAGGFI-LGAVHNPILLIVVLVLFAVIAAIFIWNTCW 265 (320)
Q Consensus 227 mGliaG~Fi-L~AVhnaiLLivV~~lf~~VaalfiWN~~w 265 (320)
+.+++|++. --+.+++. .+.++|++|.+++|+|.-+
T Consensus 28 la~~s~~~a~~~~~~~~~---~~ai~~glvwgl~I~~lDR 64 (301)
T PF14362_consen 28 LAGLSGGYALYTVFGGPV---WAAIPFGLVWGLVIFNLDR 64 (301)
T ss_pred HHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHH
Confidence 333333433 34445444 5566677888888888743
No 42
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=53.01 E-value=29 Score=34.21 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020879 217 VLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 217 ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
..|..++-+..++++... ...+++....+ +.++.++....+.|+.+. +|=..+|...+|++
T Consensus 81 ~~~~~~l~~~~~l~~~~v-~~~~~~l~v~~-~~~~~~~llp~~~~~~~~-~rr~krf~~qlP~a 141 (309)
T COG4965 81 LARLILLSAGAGLAVALV-AWLGLSLLVAL-VALIGAALLPRLVLRSRR-ARRLKRFGQQLPEA 141 (309)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhccHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHH
Confidence 344444444444443322 24444444443 333333333333333333 33378999999987
No 43
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=52.89 E-value=16 Score=31.60 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.8
Q ss_pred HHHHhhhc
Q 020879 259 FIWNTCWG 266 (320)
Q Consensus 259 fiWN~~wg 266 (320)
|||=++|+
T Consensus 83 li~y~irR 90 (122)
T PF01102_consen 83 LISYCIRR 90 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44445554
No 44
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=52.66 E-value=23 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.333 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCccccc--CCCCcEEEEeEEEE
Q 020879 241 NPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRT--AKSGQFVKVTGVCN 298 (320)
Q Consensus 241 naiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~--AkdGQyVKVTGVVT 298 (320)
+..++++++++++.+++|.+++.- ..+.-| |.-+|+.. +..||.|+|.|.|.
T Consensus 8 rl~~~~~~~~~~~~~~~L~~~a~~---~~~~yf---~tpse~~~~~~~~g~~vrvgG~V~ 61 (148)
T PRK13254 8 RLLIILGALAALGLAVALVLYALR---QNIVFF---YTPSEVAEGEAPAGRRFRLGGLVE 61 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCcee---eCHHHHhcCCccCCCeEEEeEEEe
Confidence 344455555555666666665432 222222 22233332 25699999999996
No 45
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=51.54 E-value=37 Score=27.06 Aligned_cols=48 Identities=13% Similarity=0.349 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFIS 275 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ 275 (320)
+|.++++++.++++|.++= .... ++++..+++++|+...=. -+.+.++
T Consensus 9 l~~l~~~~l~~~lvG~~~g-----~~~~----~l~~~l~~~l~wh~~~l~-rL~~WL~ 56 (90)
T PF11808_consen 9 LWRLLLLLLAAALVGWLFG-----HLWW----ALLLGLLLYLFWHLYQLY-RLERWLR 56 (90)
T ss_pred HHHHHHHHHHHHHHHHHHh-----HHHH----HHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 5555566666666665542 1111 233334455667665432 2444444
No 46
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=51.12 E-value=25 Score=30.97 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhhhccchHH
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFILGAVHNPIL 244 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~FiL~AVhnaiL 244 (320)
+-+.+.|.++.++++.++.-..+++.-++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 35 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLVSFFGFDHSFLL 35 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44556677666665555444444455555444
No 47
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=51.11 E-value=15 Score=28.97 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020879 244 LLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 244 LLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
|+++++.+.++|+.+|+ .|+-++.+++..|-.
T Consensus 1 l~iilali~G~~~Gff~-----ar~~~~k~l~~NPpi 32 (64)
T PF03672_consen 1 LLIILALIVGAVIGFFI-----ARKYMEKQLKENPPI 32 (64)
T ss_pred ChHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCC
Confidence 45667777777777765 678888888888753
No 48
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=50.95 E-value=51 Score=35.35 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.9
Q ss_pred HHhhhcchhhhhhhhcCCCc
Q 020879 261 WNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 261 WN~~wgrr~l~~Fv~ryPDa 280 (320)
|+-.++++.+....+-.|+.
T Consensus 85 ~ae~ra~~~~~sL~~l~~~~ 104 (679)
T PRK01122 85 LAEGRGKAQADSLRGAKKDT 104 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 66666778888888878874
No 49
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=50.53 E-value=12 Score=34.28 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=20.7
Q ss_pred hhhhhhhcCCCcccccCCCCcEEEEeEE
Q 020879 269 AITDFISCHPDTDLRTAKSGQFVKVTGV 296 (320)
Q Consensus 269 ~l~~Fv~ryPDadLR~AkdGQyVKVTGV 296 (320)
.-..+...|+|+ .+...|.-||+-||
T Consensus 31 ~~~~~~~~f~~~--~GL~~g~~V~~~Gv 56 (291)
T TIGR00996 31 GTYTVYAYFTDA--GGLYPGSKVRVRGV 56 (291)
T ss_pred CCeEEEEEECCC--cCCCCCCceEEcce
Confidence 346778888877 47899999999886
No 50
>PRK09110 flagellar motor protein MotA; Validated
Probab=50.39 E-value=25 Score=33.82 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhh
Q 020879 222 ILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITD 272 (320)
Q Consensus 222 illf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~ 272 (320)
-++++.++++++|++ .-+|=+.+|||+++.++++.+-+-++..+. -+.+..
T Consensus 6 Gli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtlga~lv~~p~~~i~~~~k~~~~ 63 (283)
T PRK09110 6 GYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPK 63 (283)
T ss_pred HHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556666555 337888999999999999999999988886 334333
No 51
>PRK10621 hypothetical protein; Provisional
Probab=50.11 E-value=40 Score=30.83 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=42.0
Q ss_pred cccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 020879 206 DYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWN 262 (320)
Q Consensus 206 ~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN 262 (320)
.|.-|+++.....|.+++-.+.|-++|++++..+....+-.++.++...++..++++
T Consensus 68 ~~~~~~~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 68 YFIRRKVVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 444567788888888888899999999999988887777666665555555555443
No 52
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=49.42 E-value=22 Score=28.33 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcc
Q 020879 244 LLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTD 281 (320)
Q Consensus 244 LLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDad 281 (320)
.||+++.|.++++.|-+|-+-+-......|-+ +-|++
T Consensus 16 ~LIAvvLLLsIl~~lt~~ai~~Qq~~At~~Y~-~~d~~ 52 (66)
T PF13179_consen 16 MLIAVVLLLSILAFLTYWAIKVQQEQATNPYK-LKDAN 52 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccChH
Confidence 47888888999999999999888888888876 55553
No 53
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=49.32 E-value=27 Score=33.22 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhhhh---------hhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 223 LIFVMGFIAGGFIL---------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 223 llf~mGliaG~FiL---------~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+++++++++++|++ .-||=+.++||+++-++++.+-+-|+..+.
T Consensus 3 iv~~~~~v~~g~~l~Gg~~~~l~~~~~~~~~lIV~GGt~ga~li~~p~~~i~~ 55 (254)
T PRK06743 3 IIVGFAIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATIVVAYRFGEIKK 55 (254)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555554 227888999999999999999999998886
No 54
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.98 E-value=27 Score=33.77 Aligned_cols=45 Identities=16% Similarity=0.067 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcchhhhhhhhcCCCc----ccccCCCCcEEEEeEEEE
Q 020879 252 FAVIAAIFIWNTCWGRKAITDFISCHPDT----DLRTAKSGQFVKVTGVCN 298 (320)
Q Consensus 252 f~~VaalfiWN~~wgrr~l~~Fv~ryPDa----dLR~AkdGQyVKVTGVVT 298 (320)
+.+++.+.+|...+.+..- |..+|-.. +......|..|++.||.-
T Consensus 18 l~~~~~~~~~~~~~~~~~~--~~~~~~v~a~f~~~~GL~~gs~V~~~GV~V 66 (359)
T COG1463 18 LLAVLLFVLWLATLPGLPG--GTGTYTVTAYFDDAGGLYVGSPVRYRGVKV 66 (359)
T ss_pred HHHHHHHHHHHhhcccccc--CCCceEEEEEecccccCCCCCceEEcCEEe
Confidence 3344455566666654422 44444443 444578899999999853
No 55
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=48.88 E-value=19 Score=34.29 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhhhcch
Q 020879 249 LVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 249 ~~lf~~VaalfiWN~~wgrr 268 (320)
-++++++++++++=.||.|+
T Consensus 237 W~~i~l~~~m~~~v~~w~R~ 256 (256)
T PF14494_consen 237 WVLIALVASMVLYVVAWWRQ 256 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 34445556666666677664
No 56
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=48.00 E-value=50 Score=28.92 Aligned_cols=13 Identities=46% Similarity=1.288 Sum_probs=7.9
Q ss_pred cccCCchhHHHHHH
Q 020879 210 RKNFPKPVLWLVIL 223 (320)
Q Consensus 210 r~~~Pk~ilW~vil 223 (320)
+..+|.+ +|.+++
T Consensus 132 ~~~lp~~-~w~vl~ 144 (209)
T PF14023_consen 132 QSSLPPP-LWIVLL 144 (209)
T ss_pred hcCCChh-HHHHHH
Confidence 3578887 555443
No 57
>PRK08124 flagellar motor protein MotA; Validated
Probab=47.54 E-value=29 Score=32.72 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 222 ILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 222 illf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
-+++++|.++++|++ .-||=+.+|||++..++++.+-+-|+.++.
T Consensus 8 G~~~~~~~i~~g~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~i~~~~~~~~~ 58 (263)
T PRK08124 8 GLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSELKK 58 (263)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555555554 347888999999999999999999988886
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=47.12 E-value=40 Score=32.35 Aligned_cols=11 Identities=18% Similarity=0.830 Sum_probs=5.1
Q ss_pred HHHHHHHHhhh
Q 020879 222 ILIFVMGFIAG 232 (320)
Q Consensus 222 illf~mGliaG 232 (320)
+++++.|+++|
T Consensus 8 ~~~l~~~~~~~ 18 (398)
T PRK10747 8 FVLLIAGIVVG 18 (398)
T ss_pred HHHHHHHHHHH
Confidence 44444454444
No 59
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=47.07 E-value=36 Score=32.68 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=34.3
Q ss_pred HHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 222 ILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 222 illf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
-++++.++++++|++ .-++=+.++||+++-++++.+-+-|+..+.
T Consensus 6 Gli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtlga~lis~p~~~~~~ 56 (282)
T TIGR03818 6 GLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAIGAFIIANPPKVLKE 56 (282)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555655555 337888999999999999999999998886
No 60
>PRK12482 flagellar motor protein MotA; Provisional
Probab=46.77 E-value=32 Score=33.28 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhhhh------hhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 221 VILIFVMGFIAGGFIL------GAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 221 villf~mGliaG~FiL------~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+-+++++++++++|++ .-+|=+.++||+++-++++.+-+-|+.++.
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~ga~lis~p~~~~~~ 56 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKE 56 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445566666666655 337778899999999999999999998886
No 61
>PRK08990 flagellar motor protein PomA; Reviewed
Probab=46.43 E-value=42 Score=31.67 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=31.4
Q ss_pred HHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 227 MGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 227 mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
.|++.|+=+..-|+=+.++||+++-++++..-+.|.-+++
T Consensus 18 ~g~~~gg~~~~l~~~~~~lIV~GGt~ga~l~~~~~~~~~~ 57 (254)
T PRK08990 18 MAMVLGGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFG 57 (254)
T ss_pred HHHHhcCcHHHHhCHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3455555555568889999999999999998888888876
No 62
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=45.96 E-value=28 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=13.2
Q ss_pred CCCCcEEEEeEEEEeeecCcchh
Q 020879 285 AKSGQFVKVTGVCNSTYSNRNFF 307 (320)
Q Consensus 285 AkdGQyVKVTGVVTC~~~~~~~~ 307 (320)
-.+|+-|+|+| |. -+.+|.
T Consensus 30 ~ItGeSv~I~g---C~-~~~e~i 48 (59)
T PF02495_consen 30 VITGESVTISG---CE-FTPEFI 48 (59)
T ss_pred EEeCcEEEEEC---CC-CCHHHH
Confidence 37899999999 83 344443
No 63
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=45.52 E-value=39 Score=34.48 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=26.8
Q ss_pred ccccccccCccccccccCCchhHHHHHHHHHHHHhhhh
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGG 233 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~ 233 (320)
.+++++.+|.+ .-+|++||++++.++.+.+.-+++-.
T Consensus 248 d~v~~~aeE~k-nP~r~iP~aii~sl~i~~vlY~lv~~ 284 (557)
T TIGR00906 248 DAIATTGEEVK-NPQRAIPIGIVTSLLVCFVAYFLMSA 284 (557)
T ss_pred HHHHHhHHhcc-CccccccHHHHHHHHHHHHHHHHHHH
Confidence 45677777755 45789999999988877776655433
No 64
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=45.40 E-value=30 Score=27.29 Aligned_cols=49 Identities=16% Similarity=0.395 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 215 KPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 215 k~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
+..-+++++..+++|++| |++--+++.+...++++++++++.+=-|-..
T Consensus 11 ~l~~~il~~~~iisfi~G-y~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y 59 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVG-YITQSFSYTFYIYGAGVVLTLLVVVPPWPFY 59 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhheeCCcHhh
Confidence 344566677777788776 5677888888888888888888888778764
No 65
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=45.40 E-value=52 Score=28.19 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc------ccccC-----C
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT------DLRTA-----K 286 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa------dLR~A-----k 286 (320)
.+++.+=+++|+++|.++.-....+ .++..++++++++.+++. .+-+.+.=+..||. |++-+ .
T Consensus 27 ~~~a~~~~~~g~~~gl~la~~~g~~-a~~pt~~ll~~~~~v~~g-----g~~l~rlKRGKP~~yl~r~l~~~l~~~g~l~ 100 (121)
T PF11990_consen 27 GLAAGVGFVAGLVVGLPLALLTGWW-AMIPTGALLGPILGVFVG-----GKLLARLKRGKPEGYLYRRLQWRLARRGPLG 100 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh-----HHHHHHHHcCCchhHHHHHHHHHHHHhcccC
Confidence 3444555677788888876666654 455566666666665553 34455555666764 33333 3
Q ss_pred CCcEEEEeEEEEeeec
Q 020879 287 SGQFVKVTGVCNSTYS 302 (320)
Q Consensus 287 dGQyVKVTGVVTC~~~ 302 (320)
.-+||.-+|.=+|--+
T Consensus 101 ~~~lI~~sg~W~~rR~ 116 (121)
T PF11990_consen 101 GSRLITRSGAWSLRRT 116 (121)
T ss_pred CCCcEEeeCcEecccc
Confidence 4567777776655433
No 66
>PRK01844 hypothetical protein; Provisional
Probab=44.97 E-value=19 Score=29.09 Aligned_cols=17 Identities=41% Similarity=0.737 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 020879 218 LWLVILIFVMGFIAGGF 234 (320)
Q Consensus 218 lW~villf~mGliaG~F 234 (320)
+|+.|+|.+.+|++|++
T Consensus 3 ~~~~I~l~I~~li~G~~ 19 (72)
T PRK01844 3 IWLGILVGVVALVAGVA 19 (72)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666666653
No 67
>PF03916 NrfD: Polysulphide reductase, NrfD; InterPro: IPR005614 NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway [].
Probab=44.61 E-value=55 Score=30.39 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=23.3
Q ss_pred ccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhc
Q 020879 198 VTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 198 Vt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AV 239 (320)
||+++++. |=- +|+..-+|..|+.+|+|++++.
T Consensus 2 vt~~~~~~--------~WG-l~i~~y~f~~glaaG~~~~a~~ 34 (313)
T PF03916_consen 2 VTGMSDQV--------PWG-LPIAVYLFFGGLAAGAFLLASL 34 (313)
T ss_pred CCCCCCCC--------Ccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 78887763 222 4566678888999998887664
No 68
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=43.72 E-value=60 Score=28.42 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 020879 228 GFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 228 GliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~ 263 (320)
+|++|+++...+....++.++..++++++.++++..
T Consensus 88 ~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r~ 123 (154)
T PRK10862 88 GLFLGAALFQLLFGSDLAALCGALLGGVGGFLLARG 123 (154)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444445777777788888877776653
No 69
>PRK10847 hypothetical protein; Provisional
Probab=43.52 E-value=52 Score=29.72 Aligned_cols=15 Identities=27% Similarity=0.891 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhhh
Q 020879 218 LWLVILIFVMGFIAGG 233 (320)
Q Consensus 218 lW~villf~mGliaG~ 233 (320)
+|+.+.+ ..|..+|.
T Consensus 166 ~W~~~~~-~~Gy~~g~ 180 (219)
T PRK10847 166 LWVLLFT-YAGYFFGT 180 (219)
T ss_pred HHHHHHH-HHHHHHcC
Confidence 5554433 23555554
No 70
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=43.29 E-value=56 Score=29.43 Aligned_cols=51 Identities=24% Similarity=0.506 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVHN---PILLIVVLVLFAVIAAIFIWNTCWGR 267 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVhn---aiLLivV~~lf~~VaalfiWN~~wgr 267 (320)
+++|+.+ ++.+|..+|-.+..-+|. .+..+++.+++.++.+...|...|.+
T Consensus 150 a~iW~~~-~~~lGy~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (208)
T COG0586 150 ALLWALV-LTLLGYLLGEVIDVLVHLLLVLLGILVLAVLVLVLLLALLWWLRRRK 203 (208)
T ss_pred HHHHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578655 456788888776655555 33333445555555555555555543
No 71
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=42.84 E-value=66 Score=23.96 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=29.3
Q ss_pred cccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHH
Q 020879 206 DYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIA 256 (320)
Q Consensus 206 ~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Va 256 (320)
+|.-++.+|+-.=+..++.....++..+|++ +.+..+.++++++...++
T Consensus 17 ~w~~~r~i~~k~K~~a~~~m~~~~~~s~~~~--~~~~~~~~~l~~~~~~~~ 65 (71)
T PF04304_consen 17 NWEEHRGIPRKAKIRALLMMWLSMGISAFFF--VPNLWVRIVLAAILLIVA 65 (71)
T ss_pred HHHHCCCcCHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHH
Confidence 4556778888887777777666666665543 345444444444444333
No 72
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=42.81 E-value=39 Score=32.53 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=29.4
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhc
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AV 239 (320)
.++.+.+|.+ .-||++||++++.+++.+++.++.-..++..+
T Consensus 209 ~~~~~aeE~k-~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 209 SASVAAGVVK-NPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHhh-CcccchhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566666644 45789999999998888877766655544433
No 73
>COG5510 Predicted small secreted protein [Function unknown]
Probab=42.76 E-value=31 Score=25.71 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=20.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 239 VHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 239 VhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+++-|+|++++++.+++.+-. |+.+|
T Consensus 2 mk~t~l~i~~vll~s~llaaC--NT~rG 27 (44)
T COG5510 2 MKKTILLIALVLLASTLLAAC--NTMRG 27 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHh--hhhhc
Confidence 356788888888888887776 88877
No 74
>PF12676 DUF3796: Protein of unknown function (DUF3796); InterPro: IPR024257 This family of proteins is functionally uncharacterised. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.
Probab=42.26 E-value=54 Score=27.94 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=34.4
Q ss_pred cccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHH-HHHHHHHHHHHHHHHHHHhhhc
Q 020879 208 SFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPIL-LIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 208 sfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiL-LivV~~lf~~VaalfiWN~~wg 266 (320)
+++++.=|+..++..+-++..+++...+ ...+|..+ .+.+.+.++....+++|+..+=
T Consensus 50 rf~~n~~kAa~~af~v~l~~~~ii~l~~-~i~~~~~~~~~~i~i~~~i~l~vf~~~~~~y 108 (118)
T PF12676_consen 50 RFYENVRKAASRAFFVALILLFIILLIS-MIFDNLELITILIAIAFAIALLVFAISYLYY 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788887776666655555555444 33334333 3444555566666677776654
No 75
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.57 E-value=54 Score=29.63 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.0
Q ss_pred CCCcEEEEeEEEE
Q 020879 286 KSGQFVKVTGVCN 298 (320)
Q Consensus 286 kdGQyVKVTGVVT 298 (320)
..||.|.|-|.|.
T Consensus 55 ~~g~~iRvgG~V~ 67 (160)
T PRK13165 55 EVGQRLRVGGMVM 67 (160)
T ss_pred CCCCEEEEeeEEe
Confidence 4689999999886
No 76
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=41.56 E-value=11 Score=29.99 Aligned_cols=44 Identities=30% Similarity=0.375 Sum_probs=32.7
Q ss_pred HHHHHh---hhcchhhhhhhhcCC--Cc--cccc------CCCCcEEEEeEEEEeee
Q 020879 258 IFIWNT---CWGRKAITDFISCHP--DT--DLRT------AKSGQFVKVTGVCNSTY 301 (320)
Q Consensus 258 lfiWN~---~wgrr~l~~Fv~ryP--Da--dLR~------AkdGQyVKVTGVVTC~~ 301 (320)
.|+||. +.|+.+|..++...| ++ ++.+ ..++=+|.|+|.|++.-
T Consensus 33 ~~~~~~~~~~~g~~~I~~~l~~lp~~~~~~~i~~~d~q~~~~~~ili~V~G~~~~~~ 89 (119)
T cd00780 33 MLSREGMKQVTGRDAIVEKLSSLPFQKTKHKITTVDSQPTPSGGVIVMVTGSLKLDE 89 (119)
T ss_pred EEEECCceEecCHHHHHHHHHhCCCcceEEEEEEEeeeEcCCCCEEEEEEEEEEECC
Confidence 345554 888999999999999 43 2222 23778899999999884
No 77
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.48 E-value=11 Score=35.55 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=18.3
Q ss_pred eEEEEeeecCcchhhhHHHHhhhc
Q 020879 294 TGVCNSTYSNRNFFVFYVLLLHSM 317 (320)
Q Consensus 294 TGVVTC~~~~~~~~~~~~~~~~~~ 317 (320)
|-+|--+-.-|+||+||.+.||-+
T Consensus 209 ~r~vL~nr~~R~~f~~Y~l~LH~l 232 (248)
T PF08172_consen 209 TRFVLSNRTTRMLFFFYCLGLHLL 232 (248)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHH
Confidence 444555556689999999999965
No 78
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=41.44 E-value=43 Score=37.09 Aligned_cols=47 Identities=21% Similarity=0.182 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 220 LVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 220 ~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+|+.+|+.-..+|.|-+.-.--+++++++++++++++.+.+|+..|=
T Consensus 26 ~v~~lfla~~~~Gl~~~lp~~~~~~~l~~~~~~~~~~l~~~~rfr~P 72 (851)
T TIGR02302 26 SLVGLFLSLGWAGLFLALPFWLHIAGLVLFAALALVALIPAIRFRWP 72 (851)
T ss_pred HHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Confidence 44455555566676655522212233333333333333455565554
No 79
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=40.02 E-value=50 Score=29.61 Aligned_cols=18 Identities=39% Similarity=0.785 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 020879 218 LWLVILIFVMGFIAGGFI 235 (320)
Q Consensus 218 lW~villf~mGliaG~Fi 235 (320)
-|.-.+.-..+|++|+++
T Consensus 131 p~~~al~~~~sf~lg~li 148 (213)
T PF01988_consen 131 PWKAALATFLSFILGGLI 148 (213)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466666666666766643
No 80
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.27 E-value=42 Score=27.16 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCc
Q 020879 243 ILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 243 iLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDa 280 (320)
||++|++.|++++..+|+ .||-...+++..|-.
T Consensus 7 il~ivl~ll~G~~~G~fi-----ark~~~k~lk~NPpi 39 (71)
T COG3763 7 ILLIVLALLAGLIGGFFI-----ARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhCCCC
Confidence 444555555555544443 477788888887754
No 81
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=39.10 E-value=80 Score=30.54 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=18.1
Q ss_pred ccccccccCccccccccCCchhHHHHHHH
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILI 224 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~vill 224 (320)
..++.+.+|.+ .-||++||++++.++.+
T Consensus 204 E~~~~~a~E~k-nP~r~iPrAi~~~~~iv 231 (435)
T PRK10435 204 ESAAVSTGMVK-NPKRTVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHhh-CccccccHHHHHHHHHH
Confidence 33455555543 24789999998877543
No 82
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=38.69 E-value=68 Score=27.70 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHH---HHhhhhhhhhhccchHHH
Q 020879 215 KPVLWLVILIFVM---GFIAGGFILGAVHNPILL 245 (320)
Q Consensus 215 k~ilW~villf~m---GliaG~FiL~AVhnaiLL 245 (320)
--.-|.+|++|.+ |+|+..|.--||.+-.|.
T Consensus 46 gylrwslilifmilkaglivavfmhmawerlal~ 79 (115)
T COG5605 46 GYLRWSLILIFMILKAGLIVAVFMHMAWERLALV 79 (115)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3457999998875 799999999988875443
No 83
>PRK07118 ferredoxin; Validated
Probab=38.56 E-value=26 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhccc
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVHN 241 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVhn 241 (320)
.|++.+++|.++||++|.++..|-+.
T Consensus 3 ~i~~~~~~~~~~g~~~g~~l~~a~~~ 28 (280)
T PRK07118 3 MILFAVLSLGALGLVFGILLAFASKK 28 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 57899999999999999999887664
No 84
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=38.47 E-value=34 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 241 NPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 241 naiLLivV~~lf~~VaalfiWN~~wg 266 (320)
...++.+++.+++++.|.++|-.+|.
T Consensus 3 ~l~i~~iialiv~~iiaIvvW~iv~i 28 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIVVWTIVYI 28 (81)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677778888888775
No 85
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=38.28 E-value=16 Score=41.12 Aligned_cols=17 Identities=47% Similarity=0.792 Sum_probs=14.9
Q ss_pred ccccCCceeeeCCCCCC
Q 020879 7 SHQLSNGLFVSGRPEQP 23 (320)
Q Consensus 7 sHQLsnGLyVSGrPeq~ 23 (320)
-|||.|||||+++|-|.
T Consensus 1199 qH~Lps~l~v~~qp~qs 1215 (1387)
T KOG1016|consen 1199 QHQLPSGLYVKLQPGQS 1215 (1387)
T ss_pred ccccCccceEecCCccc
Confidence 59999999999999843
No 86
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=37.89 E-value=24 Score=30.68 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcc
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVH 240 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVh 240 (320)
+++++++++.++||+.|.++..|-+
T Consensus 1 ~~~~~~~~~~~~g~~~~~~l~~~~~ 25 (165)
T TIGR01944 1 MIIAAVAALSALGLALGAILGYAAR 25 (165)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhee
Confidence 3688999999999999998877754
No 87
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=37.74 E-value=1.2e+02 Score=21.84 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHH
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAI 258 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Vaal 258 (320)
-+.+++-.++|+.+|-++=--.++.-++.++.+++++++++
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~ 47 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGF 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 34566667788888888888888877888888888888775
No 88
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=37.29 E-value=20 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHhhhcchhhhhhhhcCC--------CcccccCCCCcEEEEe
Q 020879 261 WNTCWGRKAITDFISCHP--------DTDLRTAKSGQFVKVT 294 (320)
Q Consensus 261 WN~~wgrr~l~~Fv~ryP--------DadLR~AkdGQyVKVT 294 (320)
||.....+...+.....| ||.-++.+|||.|+|+
T Consensus 12 ~~s~~~~~~~~~~~~~~~~~v~inp~dA~~~Gi~~Gd~V~v~ 53 (110)
T PF01568_consen 12 YHSQYYNNPSLRLGEPEPPFVEINPEDAAKLGIKDGDWVRVS 53 (110)
T ss_dssp BTTBTTGGGHHHHHHHSTEEEEEEHHHHHHCT--TTCEEEEE
T ss_pred EeeEECcCCchHHcCCCCCEEEEcHHHHHHhcCcCCCEEEEE
Confidence 555555555555555555 5677889999999995
No 89
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=37.11 E-value=74 Score=30.08 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 020879 220 LVILIFVMGFIAGGFILG 237 (320)
Q Consensus 220 ~villf~mGliaG~FiL~ 237 (320)
+-+++++.||+.++++++
T Consensus 237 ~g~~~~~~~~~~~~~~~~ 254 (325)
T PRK10714 237 LGSIIAIGGFSLAVLLVV 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566677777777653
No 90
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=36.95 E-value=37 Score=28.08 Aligned_cols=22 Identities=14% Similarity=0.403 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhcchhhhhhh
Q 020879 253 AVIAAIFIWNTCWGRKAITDFI 274 (320)
Q Consensus 253 ~~VaalfiWN~~wgrr~l~~Fv 274 (320)
.+++++|.+..+||+.|+..+.
T Consensus 9 l~ll~~l~y~l~~g~~G~~~~~ 30 (105)
T PRK00888 9 LALLVWLQYSLWFGKNGILDYW 30 (105)
T ss_pred HHHHHHHHHHHhccCCcHHHHH
Confidence 3444556666667777665543
No 91
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=36.84 E-value=95 Score=27.88 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=31.0
Q ss_pred CCchhHHHHHHHH-HHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q 020879 213 FPKPVLWLVILIF-VMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAIT 271 (320)
Q Consensus 213 ~Pk~ilW~villf-~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~ 271 (320)
+|......+..++ ..=+++|..++.-.-+..-.++..+|+..-.+.+.+|..+|++.+.
T Consensus 45 lP~~~~~~~A~~lP~~El~~gl~Ll~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~id 104 (184)
T PF07291_consen 45 LPDWLVRPVAWALPWLELALGLLLLFPPTRRWAALLAAALLLVFTAAIAINLLRGRTDID 104 (184)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5654333333222 3335555555444444444445555555555666788888776554
No 92
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=36.79 E-value=1.1e+02 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 020879 218 LWLVILIFVMGFIAGGFIL 236 (320)
Q Consensus 218 lW~villf~mGliaG~FiL 236 (320)
.|.+..++.+.+++-.|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (356)
T PRK10755 9 LLTIGLILLVFQLISVFWL 27 (356)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555544
No 93
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=36.35 E-value=83 Score=26.15 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=10.0
Q ss_pred hhhhcCCCccccc
Q 020879 272 DFISCHPDTDLRT 284 (320)
Q Consensus 272 ~Fv~ryPDadLR~ 284 (320)
.++++.||+-.|.
T Consensus 86 ~~~k~~P~S~~R~ 98 (101)
T PRK13707 86 GIFHNVPDSCFRQ 98 (101)
T ss_pred cccCcCCcHHHHH
Confidence 4688999987773
No 94
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.16 E-value=36 Score=24.79 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=10.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhh
Q 020879 214 PKPVLWLVILIFVMGFIAGGFI 235 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~Fi 235 (320)
+-+...++++.|++|+++|.++
T Consensus 17 ~~pl~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 17 PLPLGLLILIAFLLGALLGWLL 38 (68)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3343344455555565555443
No 95
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=36.14 E-value=53 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-chhh-hhhhhcCCCcccccCCCCcEEEEeEE
Q 020879 245 LIVVLVLFAVIAAIFIWNTCWG-RKAI-TDFISCHPDTDLRTAKSGQFVKVTGV 296 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~wg-rr~l-~~Fv~ryPDadLR~AkdGQyVKVTGV 296 (320)
|++++++++++.+|..++.+-- =.|+ +-|- |-.+.|++|+|.|+
T Consensus 27 l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~--------~pf~vGD~I~i~~~ 72 (206)
T PF00924_consen 27 LLASLGVLGLAIGFAFQDIISNFISGIIILFE--------RPFKVGDRIEIGGV 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC---------SS-TT-EEESSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCccCCCEEEEEEe
Confidence 3455555566666666665543 1122 2221 23488999987543
No 96
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=36.13 E-value=1.7e+02 Score=23.23 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=11.0
Q ss_pred hhhhhhcCCCccccc
Q 020879 270 ITDFISCHPDTDLRT 284 (320)
Q Consensus 270 l~~Fv~ryPDadLR~ 284 (320)
+.=.+||+=|+....
T Consensus 63 lal~vRRlhD~G~sg 77 (120)
T PF05656_consen 63 LALTVRRLHDIGRSG 77 (120)
T ss_pred HHHHhhhhhcCCCCC
Confidence 456788888887755
No 97
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=36.03 E-value=1.2e+02 Score=21.95 Aligned_cols=40 Identities=18% Similarity=0.384 Sum_probs=25.0
Q ss_pred HHHhhhhhhhhhccc---hHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 227 MGFIAGGFILGAVHN---PILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 227 mGliaG~FiL~AVhn---aiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+|-.+|+|+....+. ..+--.+..+++++..+++|+...+
T Consensus 6 iGa~vGg~l~~~lg~~~~~~~~~~i~aviGAiill~i~~~i~r 48 (48)
T PF04226_consen 6 IGAFVGGWLFGLLGINGGGSWGSFIVAVIGAIILLFIYRLIRR 48 (48)
T ss_pred HHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555444433 3444457788899999999987653
No 98
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=35.95 E-value=59 Score=23.55 Aligned_cols=27 Identities=22% Similarity=0.615 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcch
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr 268 (320)
+|+..|++++...+...|.+-||++|.
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345556666666777788888888764
No 99
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=35.90 E-value=73 Score=28.47 Aligned_cols=55 Identities=15% Similarity=0.300 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcch--hhhhhhhc
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRK--AITDFISC 276 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr--~l~~Fv~r 276 (320)
||.++|.+.++- -|+ ..-++...+..++.....++..++|+++|.-. -..+++++
T Consensus 125 PK~~lf~la~~p-------qfv-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 181 (208)
T COG1280 125 PKAILFFLAFLP-------QFV-DPGAGLVLLQALILGLVFILVGFVVLALYALLAARLRRLLRR 181 (208)
T ss_pred cHHHHHHHHHHh-------hhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899888776652 222 22222223333334444555666777777633 35566665
No 100
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=35.87 E-value=12 Score=36.37 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHhhhc
Q 020879 256 AAIFIWNTCWG 266 (320)
Q Consensus 256 aalfiWN~~wg 266 (320)
+|.+||=||++
T Consensus 161 IA~iIa~icyr 171 (290)
T PF05454_consen 161 IAGIIACICYR 171 (290)
T ss_dssp -----------
T ss_pred HHHHHHHHhhh
Confidence 34455556665
No 101
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=35.81 E-value=75 Score=30.92 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred ccccccccCccccccccCCchhHHHHHHHHHHH
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILIFVMG 228 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mG 228 (320)
.+++.+.+|.+ .-+|++||++++++++.++++
T Consensus 234 e~~~~~a~E~k-nP~r~iP~Ai~~s~~i~~~~~ 265 (482)
T TIGR00907 234 DGTAHMAEEIE-NPEVVGPRAIIGAVAIGIVTG 265 (482)
T ss_pred chhhHHHHhcC-ChhhhcCHHHHHHHHHHHHHH
Confidence 44556666644 448899999999876654444
No 102
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.37 E-value=25 Score=29.76 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhhh
Q 020879 222 ILIFVMGFIAGGFIL 236 (320)
Q Consensus 222 illf~mGliaG~FiL 236 (320)
++.|++|+|+|.|+.
T Consensus 3 ~i~lvvG~iiG~~~~ 17 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIG 17 (128)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555443
No 103
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=35.25 E-value=59 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.1
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhc
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~AV 239 (320)
||.+.|..+++++.+++.|.++....
T Consensus 76 ~~~v~~~~~~~~~~a~~~Gi~l~~~~ 101 (284)
T TIGR00751 76 PREVKTALITSVALGALSGLVLALLA 101 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788999999999999998876533
No 104
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.11 E-value=45 Score=25.94 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 020879 245 LIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~~wg 266 (320)
|+||++++++++++++.+....
T Consensus 15 lLVvl~Iigil~~~~~p~~~~~ 36 (149)
T COG2165 15 LLVVLAIIGILAALALPSLQGS 36 (149)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
Confidence 3444555555555555554443
No 105
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=34.43 E-value=44 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 020879 242 PILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~ 263 (320)
-+||+++.++.+++++.|+++.
T Consensus 9 viLliaitVilaavv~~~~~~~ 30 (80)
T PF07790_consen 9 VILLIAITVILAAVVGAFVFGL 30 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3677788888888888887765
No 106
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=34.30 E-value=86 Score=28.34 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=29.6
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhhhc----cchHHHHHHHHHHHHHHHHHHHHh
Q 020879 211 KNFPKPVLWLVILIFVMGFIAGGFILGAV----HNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 211 ~~~Pk~ilW~villf~mGliaG~FiL~AV----hnaiLLivV~~lf~~VaalfiWN~ 263 (320)
.+.++.-.|.+.++|.+--.+|++|-.++ +...-..+...+.++.+..|+|=+
T Consensus 225 ~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aaG~~lyv~ 281 (317)
T PF02535_consen 225 AGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAAGTFLYVA 281 (317)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666665555555555555 444445555666666666666543
No 107
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=34.30 E-value=68 Score=35.83 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCcEEEE
Q 020879 240 HNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVKV 293 (320)
Q Consensus 240 hnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQyVKV 293 (320)
..|+--+++++++.+.+++=.|+-.+.+|.+..+-+..+. .-+..+||+.++|
T Consensus 79 ~~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~-~~~ViRdg~~~~I 131 (1053)
T TIGR01523 79 HDWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASP-MAHVIRNGKSDAI 131 (1053)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCC-ceEEEeCCeeeec
Confidence 4555555555566666777788888888888776655443 3344556655443
No 108
>PRK00523 hypothetical protein; Provisional
Probab=34.26 E-value=36 Score=27.53 Aligned_cols=16 Identities=25% Similarity=0.303 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 020879 218 LWLVILIFVMGFIAGG 233 (320)
Q Consensus 218 lW~villf~mGliaG~ 233 (320)
+|..|+|.+.+|++|+
T Consensus 4 ~~l~I~l~i~~li~G~ 19 (72)
T PRK00523 4 IGLALGLGIPLLIVGG 19 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666555555554
No 109
>COG2261 Predicted membrane protein [Function unknown]
Probab=33.93 E-value=1.1e+02 Score=25.30 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhhhhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhh
Q 020879 221 VILIFVMGFIAGGFILGAVH----NPILLIVVLVLFAVIAAIFIWNTCW 265 (320)
Q Consensus 221 villf~mGliaG~FiL~AVh----naiLLivV~~lf~~VaalfiWN~~w 265 (320)
=|++=..|-.+|.+++.++. .--+.-.+.++++++..+++|....
T Consensus 32 nIilGIVGA~vg~~l~~~~g~~~~~~~~~~~i~avIGAvIll~i~~~v~ 80 (82)
T COG2261 32 NIILGIVGAFVGGWLLGALGFGGPGGNIASFIVAVIGAVILLAIVRLVR 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777778888874 3334555667788888888888766
No 110
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=33.89 E-value=1.1e+02 Score=29.12 Aligned_cols=10 Identities=10% Similarity=0.331 Sum_probs=5.0
Q ss_pred hhhhhhhhcC
Q 020879 268 KAITDFISCH 277 (320)
Q Consensus 268 r~l~~Fv~ry 277 (320)
+|+.+|++.+
T Consensus 467 ~gfr~~L~d~ 476 (511)
T PF09972_consen 467 KGFRRYLADF 476 (511)
T ss_pred HHHHHHHhhh
Confidence 3455566433
No 111
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=1.3e+02 Score=29.09 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhc--chhhhhhhh---cCCCcccc---cC----CCCcEEEEeEEEEeeecCcc
Q 020879 240 HNPILLIVVLVLFAVIAAIFIWNTCWG--RKAITDFIS---CHPDTDLR---TA----KSGQFVKVTGVCNSTYSNRN 305 (320)
Q Consensus 240 hnaiLLivV~~lf~~VaalfiWN~~wg--rr~l~~Fv~---ryPDadLR---~A----kdGQyVKVTGVVTC~~~~~~ 305 (320)
.++++++++++++++.++|=.|-.-+- +.+++.=|. ..|-..|- ++ .|=||.||+ +||+|-+..
T Consensus 12 ~~~~l~~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~~~~~~~~~~~~eyrrV~--ltG~fl~~~ 87 (252)
T COG3346 12 WLALLLLLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPKLLDWADSGADLEYRRVT--LTGTFLHDK 87 (252)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCcccccchhhcCcccceEEEE--EEEEEcCCc
Confidence 456778888888899999999987554 333332222 23333332 22 335999996 899987653
No 112
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=33.22 E-value=59 Score=31.24 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=25.0
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhccchHHHHH
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILGAVHNPILLIV 247 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~AVhnaiLLiv 247 (320)
||.++|+.+.+++.+++.|.++. ...++++|++
T Consensus 87 ~~~v~~~~~~~~~ia~~~Gl~L~-~~~g~~~l~i 119 (317)
T PRK13387 87 PRNVLTVILLMYVVAAILGVYLC-MNTSWLLLVI 119 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcHHHHHH
Confidence 56789999999999999988765 4666655543
No 113
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=33.09 E-value=24 Score=34.21 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=39.4
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhcCCCccccc
Q 020879 235 ILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISCHPDTDLRT 284 (320)
Q Consensus 235 iL~AVhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~ryPDadLR~ 284 (320)
+.+-+|=+.++|+++..++++..-+=|+..-. -+.+...+++|.+.|+++
T Consensus 27 ~~~l~~~~s~lII~gg~i~A~~~~~p~~~vk~~~k~~~~~F~~~k~~~~~~ 77 (266)
T COG1291 27 LGALIQPSSLLIIVGGGIGAFMVGNPGKVVKATPKALKEAFRKPKKEDYVD 77 (266)
T ss_pred eeeeeccchhheeechhhHHHHhcCcHHHHHHHHHHHHHHHhcCchhhHHH
Confidence 55667889999999999999888888888777 566777777787666654
No 114
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.89 E-value=33 Score=29.92 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 020879 218 LWLVILIFVMGFIAGGFIL 236 (320)
Q Consensus 218 lW~villf~mGliaG~FiL 236 (320)
=|-+|++...||+||.|+.
T Consensus 74 PwglIv~lllGf~AG~lnv 92 (116)
T COG5336 74 PWGLIVFLLLGFGAGVLNV 92 (116)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4778888888888887653
No 115
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=32.87 E-value=84 Score=30.14 Aligned_cols=32 Identities=9% Similarity=0.395 Sum_probs=21.2
Q ss_pred ccccccccCccccccccCCchhHHHHHHHHHHH
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILIFVMG 228 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mG 228 (320)
.+++.+.+|.+ .-+|++||+++|.+..+.++-
T Consensus 208 e~~~~~aeE~k-~P~r~iprai~~s~~~~~~~~ 239 (442)
T TIGR00908 208 EGVAMAAEETK-NPKRDIPRGLIGAILTLLALA 239 (442)
T ss_pred HHHHHHHHHhc-CcccccCHHHHHHHHHHHHHH
Confidence 34556666643 347899999999876554433
No 116
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=32.62 E-value=1.4e+02 Score=32.09 Aligned_cols=28 Identities=11% Similarity=0.273 Sum_probs=14.8
Q ss_pred hcchhhhhhhhcCCCccc-ccCCCCcEEE
Q 020879 265 WGRKAITDFISCHPDTDL-RTAKSGQFVK 292 (320)
Q Consensus 265 wgrr~l~~Fv~ryPDadL-R~AkdGQyVK 292 (320)
++++.+...-+..|+..- |-.+||+..+
T Consensus 89 ra~~~~~~L~~~~~~~~a~~v~rdg~~~~ 117 (673)
T PRK14010 89 RGKAQANALRQTQTEMKARRIKQDGSYEM 117 (673)
T ss_pred HHHHHHHHHHcCCCcceEEEEEeCCEEEE
Confidence 446667777777776322 2224555443
No 117
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=32.57 E-value=1.7e+02 Score=21.98 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHhhhh-------------hhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 215 KPVLWLVILIFVMGFIAGG-------------FILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 215 k~ilW~villf~mGliaG~-------------FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
|.++|.++..+++-+..+. .++.--.-.+||.++++.+..++..-+++.+++
T Consensus 7 ~givy~~lg~~a~~~a~~~~~~~~~~~~~~~~~l~~~p~G~~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 7 RGIVYGALGYLALQAALGGGGSSDQGSQGALAWLLEQPFGRWLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666655531 233333335666666666666665555555544
No 118
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=32.49 E-value=61 Score=28.17 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHH----HHhhhcchh--hh----hhhhcCCCcccccCCCCcEEEE
Q 020879 239 VHNPILLIVVLVLFAVIAAIFI----WNTCWGRKA--IT----DFISCHPDTDLRTAKSGQFVKV 293 (320)
Q Consensus 239 VhnaiLLivV~~lf~~Vaalfi----WN~~wgrr~--l~----~Fv~ryPDadLR~AkdGQyVKV 293 (320)
+-+++|.++|++++..+.+|+= ||-.-+.-+ .. .-=+..||-+|.+ .||+.|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~vG~~aP~f~l~d-~~G~~v~l 67 (189)
T TIGR02661 4 ASNVLLWLAFLGLAVLMLGLIRQVGLLHERSSPMGAMITDHGPDVGDAAPIFNLPD-FDGEPVRI 67 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCCcCCCcEecC-CCCCEEec
Confidence 3455666666666666665552 332111111 01 1113467778876 57888877
No 119
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=32.48 E-value=2.3e+02 Score=26.89 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhhhhhhccc--------hHHHHHHHHH--------HHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCC
Q 020879 223 LIFVMGFIAGGFILGAVHN--------PILLIVVLVL--------FAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAK 286 (320)
Q Consensus 223 llf~mGliaG~FiL~AVhn--------aiLLivV~~l--------f~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~Ak 286 (320)
++..+||+.++.|+--=.+ ++++.+++.+ .+++++++++=+.+.=|-+++.++|+|.. .+ +
T Consensus 63 vvsGigFlgaG~I~~~~~~v~GlTTaAtlw~taaiG~~~g~G~~~~Av~~~v~~l~~l~~l~~~~~~~~~~~~~-~~--~ 139 (225)
T PRK15385 63 IVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVS-AE--G 139 (225)
T ss_pred HHHHHHHHHheeeeccCCCCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--c
Confidence 3446677666666554444 3444433222 34566677777777777899999999864 21 1
Q ss_pred CCcEEEEeEEEEeeecC
Q 020879 287 SGQFVKVTGVCNSTYSN 303 (320)
Q Consensus 287 dGQyVKVTGVVTC~~~~ 303 (320)
-.+..++ |+|.+..
T Consensus 140 -~~~~~~~--v~~~~~~ 153 (225)
T PRK15385 140 -EKRYILK--VTCNKED 153 (225)
T ss_pred -ceEEEEE--EEEcCcc
Confidence 1233443 7787655
No 120
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=32.27 E-value=43 Score=29.54 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020879 243 ILLIVVLVLFAVIAAIFI 260 (320)
Q Consensus 243 iLLivV~~lf~~Vaalfi 260 (320)
|.|+|-++|+.+|..|++
T Consensus 69 i~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 69 IVLIVSLALVSFVIFLII 86 (128)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 467888888888876654
No 121
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=32.23 E-value=1e+02 Score=26.55 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.8
Q ss_pred CCccee
Q 020879 152 ATGLIT 157 (320)
Q Consensus 152 ~TGLIT 157 (320)
+|+++.
T Consensus 37 ~t~i~i 42 (193)
T PF06738_consen 37 PTGIFI 42 (193)
T ss_pred cCEEEE
Confidence 445444
No 122
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=31.50 E-value=1.1e+02 Score=23.80 Aligned_cols=9 Identities=22% Similarity=-0.001 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 020879 245 LIVVLVLFA 253 (320)
Q Consensus 245 LivV~~lf~ 253 (320)
+.+++.++.
T Consensus 67 ~~v~G~~v~ 75 (82)
T PF11239_consen 67 LGVAGFVVM 75 (82)
T ss_pred HHHHHHHHH
Confidence 444443333
No 123
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.47 E-value=40 Score=27.27 Aligned_cols=17 Identities=47% Similarity=1.003 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 020879 218 LWLVILIFVMGFIAGGF 234 (320)
Q Consensus 218 lW~villf~mGliaG~F 234 (320)
+|+.|++.+.+|++|.|
T Consensus 3 l~lail~ivl~ll~G~~ 19 (71)
T COG3763 3 LWLAILLIVLALLAGLI 19 (71)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666666555543
No 124
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.45 E-value=96 Score=28.10 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.7
Q ss_pred CCCCcEEEEeEEEE
Q 020879 285 AKSGQFVKVTGVCN 298 (320)
Q Consensus 285 AkdGQyVKVTGVVT 298 (320)
+..||.+.|-|.|.
T Consensus 54 ~~~g~~iRvgG~V~ 67 (159)
T PRK13150 54 PAVGQRLRVGGMVM 67 (159)
T ss_pred cCCCCEEEEeeEEe
Confidence 45799999999986
No 125
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=31.45 E-value=1.1e+02 Score=33.54 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=8.8
Q ss_pred CCchhHHHHHHHHHHHHhhh
Q 020879 213 FPKPVLWLVILIFVMGFIAG 232 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG 232 (320)
|=.++.|.+++..++-|+.|
T Consensus 94 f~~~~~~~l~~~ails~~~~ 113 (941)
T TIGR01517 94 LSDQTLILLSVAAVVSLVLG 113 (941)
T ss_pred HhCHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444
No 126
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=31.41 E-value=52 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=19.0
Q ss_pred ccccCCCCcEEEEeEEEEeeecCcc
Q 020879 281 DLRTAKSGQFVKVTGVCNSTYSNRN 305 (320)
Q Consensus 281 dLR~AkdGQyVKVTGVVTC~~~~~~ 305 (320)
+....+.|+||||.|.|.+-...+.
T Consensus 59 ~~~~i~~G~vvrV~G~i~~frg~~q 83 (92)
T cd04483 59 QAKVLEIGDLLRVRGSIRTYRGERE 83 (92)
T ss_pred cccccCCCCEEEEEEEEeccCCeeE
Confidence 4445799999999999998654443
No 127
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=31.10 E-value=43 Score=25.55 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.5
Q ss_pred cccccCCCCcEEEEeEEEEeeecC
Q 020879 280 TDLRTAKSGQFVKVTGVCNSTYSN 303 (320)
Q Consensus 280 adLR~AkdGQyVKVTGVVTC~~~~ 303 (320)
.+.+..+.|+||||.|.|..-..+
T Consensus 43 ~~~~~~~~g~~v~v~G~v~~~~g~ 66 (95)
T cd04478 43 SEVEPIEEGTYVRVFGNLKSFQGK 66 (95)
T ss_pred ccccccccCCEEEEEEEEcccCCe
Confidence 367778999999999999876533
No 128
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=30.85 E-value=2.1e+02 Score=24.94 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHH--Hhhhhhhhhhcc
Q 020879 217 VLWLVILIFVMG--FIAGGFILGAVH 240 (320)
Q Consensus 217 ilW~villf~mG--liaG~FiL~AVh 240 (320)
.+|.++.++... ++..+|++..+.
T Consensus 6 ~~wli~g~~ll~~E~l~~~~~ll~~g 31 (140)
T COG1585 6 WIWLILGLLLLIAEILGPGVFLLWLG 31 (140)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 356555444443 555555555444
No 129
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=30.51 E-value=43 Score=30.09 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhcc
Q 020879 216 PVLWLVILIFVMGFIAGGFILGAVH 240 (320)
Q Consensus 216 ~ilW~villf~mGliaG~FiL~AVh 240 (320)
.++++++++.++||++|.++..|-+
T Consensus 3 ~~~~~~~~~~~lg~~~g~~l~~a~~ 27 (191)
T PRK05113 3 AIWIAVAALSLLALVFGAILGFASR 27 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999988776644
No 130
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=30.42 E-value=43 Score=30.96 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=7.6
Q ss_pred eEE-EEeeec--CcchhhhH
Q 020879 294 TGV-CNSTYS--NRNFFVFY 310 (320)
Q Consensus 294 TGV-VTC~~~--~~~~~~~~ 310 (320)
+|| ++|.-. ..+|+-.|
T Consensus 81 ~gv~a~C~DCH~Ph~~v~k~ 100 (200)
T PRK10617 81 SGVRATCPDCHVPHEFVPKM 100 (200)
T ss_pred CCCCCcCcccCCCCchHHHH
Confidence 453 456543 23444433
No 131
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=30.02 E-value=99 Score=33.53 Aligned_cols=53 Identities=8% Similarity=0.285 Sum_probs=27.7
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCcEEE
Q 020879 236 LGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQFVK 292 (320)
Q Consensus 236 L~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQyVK 292 (320)
+.-+..++.+++++++ .+.+-.|.-.+.++.+..+-+..|.. -+..+||+.+.
T Consensus 77 ~g~~~~~~~i~~~i~~---~~~i~~~qe~~a~~~l~~L~~l~~~~-~~ViRdg~~~~ 129 (884)
T TIGR01522 77 MGNIDDAVSITLAILI---VVTVGFVQEYRSEKSLEALNKLVPPE-CHLIREGKLEH 129 (884)
T ss_pred HcchhhHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhccCCCe-eEEEECCEEEE
Confidence 3444444433333333 33444566667788888877776654 22234555443
No 132
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=29.82 E-value=1e+02 Score=26.99 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHH
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFA 253 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~ 253 (320)
...+++-|+.|-++|+++.-..+-..++++.+.++.
T Consensus 168 ~~~~i~~f~~Ga~~ga~l~~~~~~~al~~~~~~l~~ 203 (209)
T PF06912_consen 168 YLLIILSFFIGAILGALLYRRLGFWALLLPALLLLL 203 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566677788888888777775555554444443
No 133
>COG0730 Predicted permeases [General function prediction only]
Probab=29.79 E-value=80 Score=28.36 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=41.5
Q ss_pred cccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 201 ITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 201 L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
++..-.|.-|+++=....+.+.+..++|-.+|+++.......++-.++.+++..++..++|...
T Consensus 59 ~~~~~~~~k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~ 122 (258)
T COG0730 59 LSSALAYLKRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPR 122 (258)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333345566666555566666666788888888777777777766666666666666555544
No 134
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=29.57 E-value=79 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=22.3
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHHHHh
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFI 230 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGli 230 (320)
.++.+.+|.+ .-+|++||++++.+++..++.++
T Consensus 212 ~~~~~a~E~k-nP~r~iPrAi~~~~~~~~~~y~l 244 (474)
T TIGR03813 212 MNAVHVKDVD-NPDKNYPIAILIAALGTVLIFVL 244 (474)
T ss_pred HhHHHHHhcc-CcccchhHHHHHHHHHHHHHHHH
Confidence 3445555533 45789999999988776666644
No 135
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=29.16 E-value=55 Score=25.51 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=14.9
Q ss_pred cCCCCcEEEEeEEEEeee
Q 020879 284 TAKSGQFVKVTGVCNSTY 301 (320)
Q Consensus 284 ~AkdGQyVKVTGVVTC~~ 301 (320)
..+.|+.|.|||.|+=-|
T Consensus 44 ~~~~Gd~V~vtG~v~ey~ 61 (78)
T cd04486 44 DVAVGDLVRVTGTVTEYY 61 (78)
T ss_pred CCCCCCEEEEEEEEEeeC
Confidence 358899999999998544
No 136
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=28.98 E-value=69 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhhhccchHHHH
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILGAVHNPILLI 246 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~AVhnaiLLi 246 (320)
||.+.|..+..++++++.|.++. ...+|.+|+
T Consensus 92 ~~~v~~~~~~~~~~a~~~Gl~L~-~~~g~~~l~ 123 (304)
T PRK07419 92 KSLVFWLANLFLLLGLLGILAIA-LQSDWTVLG 123 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcHHHHH
Confidence 78889999999999999988765 566665543
No 137
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=28.45 E-value=92 Score=33.24 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=29.7
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCC
Q 020879 211 KNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPD 279 (320)
Q Consensus 211 ~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPD 279 (320)
+.|=-++.|++.+..++-|+.|- +-.+++++ +++.+.+++=.|+-...++.+..+-+..|.
T Consensus 32 ~~~~~~~~~lL~~aa~~s~~~~~-----~~~~~~i~---~~~~i~~~i~~~qe~~a~~~~~~L~~~~~~ 92 (755)
T TIGR01647 32 GFFWNPLSWVMEAAAIIAIALEN-----WVDFVIIL---GLLLLNATIGFIEENKAGNAVEALKQSLAP 92 (755)
T ss_pred HHHhchHHHHHHHHHHHHHhhcc-----hhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33444444554444444444443 33333333 333333444456666667777776655554
No 138
>TIGR03148 cyt_nit_nrfD cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader PFAM protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase.
Probab=28.40 E-value=1.1e+02 Score=29.10 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhc
Q 020879 218 LWLVILIFVMGFIAGGFILGAV 239 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AV 239 (320)
.|++.=+|..|+.+|+|++.+.
T Consensus 12 ~~I~~Ylf~~G~~aGa~~i~~~ 33 (316)
T TIGR03148 12 WPIAIYLFLLGISAGAVMLAIL 33 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999998765
No 139
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.39 E-value=1.8e+02 Score=24.75 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=15.8
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 238 AVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 238 AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
-.+.=++|-++++++++||=+++.+....
T Consensus 108 ~~~~Rvllgl~~al~vlvAEv~l~~~y~~ 136 (142)
T PF11712_consen 108 SFPYRVLLGLFGALLVLVAEVVLYIRYLR 136 (142)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666666666665555554443
No 140
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=28.28 E-value=77 Score=25.21 Aligned_cols=35 Identities=29% Similarity=0.167 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcC
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCH 277 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ry 277 (320)
.|+...++++.+.++.-|.||- -+++.-.+|.+.|
T Consensus 20 ~i~~a~~ls~~~~~~~kf~v~~-pRKk~YadFYknY 54 (73)
T PF02937_consen 20 HIVVAFVLSLGVAAAYKFGVAE-PRKKAYADFYKNY 54 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHcc
Confidence 3333344444444343344433 3477899999998
No 141
>PRK10457 hypothetical protein; Provisional
Probab=27.85 E-value=1.9e+02 Score=23.31 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcc----chH-HHHHHHHHHHHHHHHHHHHhh
Q 020879 218 LWLVILIFVMGFIAGGFILGAVH----NPI-LLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVh----nai-LLivV~~lf~~VaalfiWN~~ 264 (320)
+|.-+++=+.|-.+|+|+..+.. ..+ +.-.+..+.++++.+++|+..
T Consensus 29 ~~~tiilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~~~~ 80 (82)
T PRK10457 29 FFMTIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKI 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55666676777777777744332 111 234566777888888888754
No 142
>PLN02922 prenyltransferase
Probab=27.47 E-value=97 Score=29.94 Aligned_cols=32 Identities=25% Similarity=0.149 Sum_probs=20.5
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhhhc-cchHHH
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFILGAV-HNPILL 245 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~FiL~AV-hnaiLL 245 (320)
=||.+.++.+..++.++ +|.+++... .+|.+|
T Consensus 94 s~~~v~~~~~~~~~la~-~g~~ll~~~~~~~~~l 126 (315)
T PLN02922 94 SRRGVLAAAIGCLALGA-AGLVWASLVAGNIRVI 126 (315)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHccChHHH
Confidence 36777888888888887 455554443 466544
No 143
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=27.41 E-value=90 Score=29.92 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=23.0
Q ss_pred ccccCCCC-cEEEEeEEE---------------EeeecCcchhhhHHHHhh
Q 020879 281 DLRTAKSG-QFVKVTGVC---------------NSTYSNRNFFVFYVLLLH 315 (320)
Q Consensus 281 dLR~AkdG-QyVKVTGVV---------------TC~~~~~~~~~~~~~~~~ 315 (320)
....-..| +++||++.- -|-|.--.=+.+|+.|.|
T Consensus 36 ~~~~v~~~~~~~kvsn~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr 86 (249)
T PF06053_consen 36 AYATVPIGSNFFKVSNQDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSR 86 (249)
T ss_pred cccccCCCcceeeecCcccCCCCeeEEEEEecccCccchhhHHHHHHHHHh
Confidence 33444555 777776533 477777777888888876
No 144
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=27.29 E-value=65 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccch
Q 020879 217 VLWLVILIFVMGFIAGGFILGAVHNP 242 (320)
Q Consensus 217 ilW~villf~mGliaG~FiL~AVhna 242 (320)
+++++++.|++|+++|-|+.-..++.
T Consensus 2 ~ii~~i~~~~vG~~~G~~~~~~~~~~ 27 (201)
T PF12072_consen 2 IIIIAIVALIVGIGIGYLVRKKINRK 27 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777766665444433
No 145
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=27.24 E-value=34 Score=31.10 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhhhhh
Q 020879 221 VILIFVMGFIAGGFIL 236 (320)
Q Consensus 221 villf~mGliaG~FiL 236 (320)
+..||+||.+||++|+
T Consensus 68 fgiVfimgvva~i~ic 83 (155)
T PF10873_consen 68 FGIVFIMGVVAGIAIC 83 (155)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4556666666665554
No 146
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=27.05 E-value=1.3e+02 Score=30.32 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=18.6
Q ss_pred ccccccCccccccccCCchhHHHHHHHHHHH
Q 020879 198 VTTITQEDDYSFRKNFPKPVLWLVILIFVMG 228 (320)
Q Consensus 198 Vt~L~~~~~ysfr~~~Pk~ilW~villf~mG 228 (320)
+..+.+|.+ .-+|++||++++.+++..+..
T Consensus 213 ~a~~a~E~k-nP~r~~PrAi~~~~i~~~~l~ 242 (507)
T TIGR00910 213 SASHINELE-NPGRDYPLAMILLMIAAICLD 242 (507)
T ss_pred HHHHHHHcc-CCcccccHHHHHHHHHHHHHH
Confidence 344444433 237899999988766554443
No 147
>PRK12504 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=26.94 E-value=1.4e+02 Score=27.15 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHH
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAA 257 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Vaa 257 (320)
.|.+-.+++..++++++..+..+|.+--++...++++..+
T Consensus 3 ~~~~~~~l~~~ll~~a~~~v~~r~~l~av~~~~~~gl~~a 42 (178)
T PRK12504 3 GTIINAALLLFLVATAVATALLRDVLASIVVFAAFSLGMA 42 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4555555566666677777666776655555555554433
No 148
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=26.55 E-value=68 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q 020879 239 VHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFIS 275 (320)
Q Consensus 239 VhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ 275 (320)
-+...++++.++++.+.+....|...+....+..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (176)
T PF13567_consen 37 RRSRIWLLLLLVLLLGGLGFHAYAYQQSSQDLSQLLP 73 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhc
Confidence 3444555555555554444555555555544555543
No 149
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=26.33 E-value=1.9e+02 Score=28.89 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCC
Q 020879 248 VLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSG 288 (320)
Q Consensus 248 V~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdG 288 (320)
-.+|+..+.+..+|..+++-| .++ ||-++..+.|.
T Consensus 137 S~~Ll~~~G~w~~~r~lr~l~-----~~~-~~~~~~~~~~~ 171 (303)
T COG2215 137 SFLLLILLGLWLLWRTLRRLR-----HRH-PKHPHFAAHPH 171 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----ccC-CCccccccCCC
Confidence 334444455555555555433 777 88777766655
No 150
>PF13347 MFS_2: MFS/sugar transport protein
Probab=26.19 E-value=1.3e+02 Score=28.25 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=9.9
Q ss_pred EEeeecCcchhhhHHH
Q 020879 297 CNSTYSNRNFFVFYVL 312 (320)
Q Consensus 297 VTC~~~~~~~~~~~~~ 312 (320)
......||+|..+.+.
T Consensus 218 ~~~~~~nr~~~~l~~~ 233 (428)
T PF13347_consen 218 LRSLFRNRPFRILLLA 233 (428)
T ss_pred hhhhcccchHHHHHHH
Confidence 4456678887655443
No 151
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=25.98 E-value=1.2e+02 Score=26.76 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhhh
Q 020879 219 WLVILIFVMGFIAGGF 234 (320)
Q Consensus 219 W~villf~mGliaG~F 234 (320)
|...+.-+..+++|++
T Consensus 89 ~~aAl~sgls~~~g~l 104 (169)
T TIGR00267 89 YMSGFIDGFSTFMGSF 104 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334434444444433
No 152
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.93 E-value=82 Score=29.14 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcchhh-------hhhhhcCCCcccc
Q 020879 239 VHNPILLIVVLVLFAVIAAIFIWNTCWGRKAI-------TDFISCHPDTDLR 283 (320)
Q Consensus 239 VhnaiLLivV~~lf~~VaalfiWN~~wgrr~l-------~~Fv~ryPDadLR 283 (320)
-|--++||.+++++..+.+|..|-..+.|++. +.|+.-|-|-+--
T Consensus 29 thm~tILiaIvVliiiiivli~lcssRKkKaaAAi~eediQfinpyqDqqw~ 80 (189)
T PF05568_consen 29 THMYTILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFINPYQDQQWA 80 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccCcccchhhc
Confidence 36667788888888888888888777776554 4567777665543
No 153
>PHA02088 hypothetical protein
Probab=25.85 E-value=41 Score=29.33 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchh------hhhhhhcCCCc-ccccCCCCcEEEEe
Q 020879 244 LLIVVLVLFAVIAAIFIWNTCWGRKA------ITDFISCHPDT-DLRTAKSGQFVKVT 294 (320)
Q Consensus 244 LLivV~~lf~~VaalfiWN~~wgrr~------l~~Fv~ryPDa-dLR~AkdGQyVKVT 294 (320)
++||++++.-..+-+-.|.-.|+|+. +--++++|--+ .|.+-+.|-+-|+-
T Consensus 5 ifi~~~~~~liac~~s~wd~~w~~k~~~e~~~~n~wl~ky~~sm~~k~~~ig~f~k~v 62 (125)
T PHA02088 5 IFIAGLVLGLIACCFSTWDSRWRKKARNEQAKINTWLAKYGISMNFKNGVVGAFEKVV 62 (125)
T ss_pred EEeHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHhceEEeccCCcccchheEE
Confidence 34555555555667789999999653 56789999877 78888888888864
No 154
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=25.72 E-value=84 Score=29.00 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=15.6
Q ss_pred CchhHHHHHHHHHHHHhhhhhh
Q 020879 214 PKPVLWLVILIFVMGFIAGGFI 235 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~Fi 235 (320)
||.+.+..+++++.+++.|.++
T Consensus 82 ~~~a~~~~~~~~~~~~~l~~~l 103 (283)
T TIGR01476 82 LREVRWNWLVLTVAGLLVALVL 103 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777888777655
No 155
>PRK11021 putative transporter; Provisional
Probab=25.68 E-value=1.5e+02 Score=28.29 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=23.3
Q ss_pred ccccccccCccccccccCCchhHHHHHHHHHHHHh
Q 020879 196 QAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFI 230 (320)
Q Consensus 196 ~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGli 230 (320)
..++.+.+|.+ .=+|++||++++.++.+.+.-++
T Consensus 194 e~~~~~a~E~k-~P~k~iPrAi~~~~~~~~~lYil 227 (410)
T PRK11021 194 EAFAHLASEFK-NPERDFPRALMIGLLLAGLVYWA 227 (410)
T ss_pred HHHHhhHHhcc-CccccccHHHHHHHHHHHHHHHH
Confidence 45566666654 33689999999888776665443
No 156
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.68 E-value=1.8e+02 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 217 VLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 217 ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
|-|.+++-.+.|+.+|-.+=--+.....+.+++.++++++. +||++
T Consensus 48 IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G--~~n~w 93 (100)
T TIGR02230 48 IGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG--CLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH--HHHHH
Confidence 46777777777777777776666655555555666665554 35553
No 157
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=25.61 E-value=2.3e+02 Score=30.65 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=16.2
Q ss_pred HHHhhhcchhhhhhhhcCCCc
Q 020879 260 IWNTCWGRKAITDFISCHPDT 280 (320)
Q Consensus 260 iWN~~wgrr~l~~Fv~ryPDa 280 (320)
.|+-.++++.+....+..|+.
T Consensus 85 ~~ae~ra~~~~~~L~~~~~~~ 105 (675)
T TIGR01497 85 AVAEGRGKAQADSLKGTKKTT 105 (675)
T ss_pred HHHHHHHHHHHHHHHhCCCCc
Confidence 377777788888888888875
No 158
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.61 E-value=33 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=11.6
Q ss_pred chhhhhhhhcCCCc
Q 020879 267 RKAITDFISCHPDT 280 (320)
Q Consensus 267 rr~l~~Fv~ryPDa 280 (320)
.+-+.+|+++|||+
T Consensus 20 ~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 20 IEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHCcCC
Confidence 56678999999985
No 159
>PRK10655 potE putrescine transporter; Provisional
Probab=25.60 E-value=1.4e+02 Score=28.72 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=19.9
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHH
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVM 227 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~m 227 (320)
.++.+.+|.+ .-+|++||++++.+....+.
T Consensus 207 ~~~~~a~E~k-~P~r~iPrAi~~~~~~~~~~ 236 (438)
T PRK10655 207 SACANSDAVE-NPERNVPIAVLGGTLGAAVI 236 (438)
T ss_pred hhhhhHHHhh-CccccccHHHHHHHHHHHHH
Confidence 4566666643 34789999998877655443
No 160
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=25.54 E-value=1.2e+02 Score=28.87 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHHHHhhhhhhh
Q 020879 214 PKPVLWLVILIFVMGFIAGGFIL 236 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL 236 (320)
||.+++..+.+++.+++.|.++.
T Consensus 98 ~~~a~~~~~~l~~~~~~lg~~l~ 120 (306)
T TIGR02056 98 EPEVITQIVLLFIAGIAIAFILD 120 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888988888774
No 161
>PRK10249 phenylalanine transporter; Provisional
Probab=25.49 E-value=1.1e+02 Score=30.08 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=18.3
Q ss_pred cccccccCccccccccCCchhHHHHHHHH
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIF 225 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf 225 (320)
.++.+.+|.+ .-||++||++++.++.+.
T Consensus 227 ~~~~~a~E~~-~P~k~iPrai~~~~~~~~ 254 (458)
T PRK10249 227 LIGITAAEAR-DPEKSIPKAVNQVVYRIL 254 (458)
T ss_pred HHHHHHHHhc-CHhhHHHHHHHHHHHHHH
Confidence 3455555543 347899999988765433
No 162
>PF06993 DUF1304: Protein of unknown function (DUF1304); InterPro: IPR009732 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=25.19 E-value=1.8e+02 Score=24.52 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 223 LIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 223 llf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
+.+++|++.|.++.-. .-..-+++..+.+.++|++..|=+.
T Consensus 52 gfLavgll~gl~~~~~-~~~~~~~~~~l~~~~~aa~yg~~T~ 92 (113)
T PF06993_consen 52 GFLAVGLLWGLFILNS-VAGLTLVLFFLGCMIVAAIYGALTS 92 (113)
T ss_pred HHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888887776 2334455566667777788877777
No 163
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=25.18 E-value=1.3e+02 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.521 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHhhhhhhhhhccchHHHHHH
Q 020879 215 KPVLWLVILIFVMGFIAGGFILGAVHNPILLIVV 248 (320)
Q Consensus 215 k~ilW~villf~mGliaG~FiL~AVhnaiLLivV 248 (320)
+...+..+.+++.++++|.+++...+|+..++..
T Consensus 77 ~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~ 110 (285)
T PRK12872 77 TKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF 110 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5556677778888899999988888888666543
No 164
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=25.14 E-value=1.5e+02 Score=28.46 Aligned_cols=7 Identities=14% Similarity=0.377 Sum_probs=3.0
Q ss_pred hhhhhcc
Q 020879 234 FILGAVH 240 (320)
Q Consensus 234 FiL~AVh 240 (320)
.++..|-
T Consensus 27 yv~i~~~ 33 (398)
T PRK10747 27 YVLIQTD 33 (398)
T ss_pred eEEEEEC
Confidence 4444433
No 165
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=25.04 E-value=1.7e+02 Score=32.42 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCC
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPD 279 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPD 279 (320)
++.-+++++++.+-+++-.|.-...++.+..+-+..|.
T Consensus 104 ~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~ 141 (997)
T TIGR01106 104 LYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQ 141 (997)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 33333333333344444556666667778877776665
No 166
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=24.77 E-value=1.5e+02 Score=28.57 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=10.6
Q ss_pred ccccccCCchhHHHHHHH
Q 020879 207 YSFRKNFPKPVLWLVILI 224 (320)
Q Consensus 207 ysfr~~~Pk~ilW~vill 224 (320)
...|+.+=+++.|=++++
T Consensus 156 ~~~~~~i~~al~YP~~ll 173 (399)
T TIGR02120 156 QALRSKITTALIYPAVLT 173 (399)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 345666767777755543
No 167
>PF02706 Wzz: Chain length determinant protein; InterPro: IPR003856 A number of related proteins are involved in the synthesis of lipopolysaccharide, O-antigen polysaccharide, capsule polysaccharide and exopolysaccharides. Chain length determinant protein (or wzz protein) is involved in lipopolysaccharide (lps) biosynthesis, conferring a modal distribution of chain length on the O-antigen component of lps []. It gives rise to a reduced number of short chain molecules and increases in numbers of longer molecules, with a modal value of 20. The MPA/MPA2 proteins function in CPS and EPS polymerisation and export [].; GO: 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane; PDB: 4E2H_C 3B8P_A 4E2C_B 4E29_A 3B8O_G 4E2L_I 3B8N_D 3B8M_C.
Probab=24.75 E-value=24 Score=28.10 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=0.0
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHH
Q 020879 235 ILGAVHNPILLIVVLVLFAVIAAIFIWN 262 (320)
Q Consensus 235 iL~AVhnaiLLivV~~lf~~VaalfiWN 262 (320)
+-..++++.+++++.++++++++++.+.
T Consensus 9 ~~~l~r~~~~i~~~~~l~~~~a~~~~~~ 36 (152)
T PF02706_consen 9 LRILWRRKWLIIIVTLLFAILAFIYAFF 36 (152)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777777777766666544
No 168
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=24.71 E-value=2.6e+02 Score=26.54 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCC
Q 020879 242 PILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHP 278 (320)
Q Consensus 242 aiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryP 278 (320)
..++..+++.+....+..+||-++-| ++.+-.+|-+
T Consensus 47 ~~~~l~~l~~~l~~~a~~~~Nd~~Dr-diD~~~~RT~ 82 (291)
T PRK12874 47 KLLILGILAAVSARNFAMAFNRLVDR-DIDKDNPRTA 82 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh-ccccCCCCCC
Confidence 34455555556667778899987753 5554444433
No 169
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=24.55 E-value=1.4e+02 Score=30.71 Aligned_cols=63 Identities=11% Similarity=0.211 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhcC-C-CcccccC
Q 020879 217 VLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG-RKAITDFISCH-P-DTDLRTA 285 (320)
Q Consensus 217 ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wg-rr~l~~Fv~ry-P-DadLR~A 285 (320)
..|+ +.++.+..+||.+.| ++.....+.....++++++|=+-.- .|.+.+|.-.+ | |+|+-+.
T Consensus 22 ~~W~-l~l~GTAIGAGmLfL-----PI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v 87 (443)
T PRK13629 22 TTWT-LGLFGTAIGAGVLFF-----PIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITET 87 (443)
T ss_pred chHH-HHHHHHHHhHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHH
Confidence 3787 678889999998877 6777777777888888888887666 59999999888 3 4666553
No 170
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=24.43 E-value=2.2e+02 Score=22.69 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHHhhhh
Q 020879 215 KPVLWLVILIFVMGFIAGG 233 (320)
Q Consensus 215 k~ilW~villf~mGliaG~ 233 (320)
|.+.|+.+++.+++.+.+-
T Consensus 15 ~~~Y~l~li~i~l~~~~~~ 33 (90)
T PF14110_consen 15 KVLYWLGLILIVLSGLSGI 33 (90)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457777776666655443
No 171
>PRK11677 hypothetical protein; Provisional
Probab=24.18 E-value=56 Score=28.64 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=11.4
Q ss_pred HHHH-HHHHHHHhhhhhhhhhc
Q 020879 219 WLVI-LIFVMGFIAGGFILGAV 239 (320)
Q Consensus 219 W~vi-llf~mGliaG~FiL~AV 239 (320)
|+++ +.|++|+|+|.|+.-..
T Consensus 3 W~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4433 34566666666665443
No 172
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=24.05 E-value=1.8e+02 Score=25.91 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccch-HHHHHHHHHHHHHHHHHHHHhhh
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNP-ILLIVVLVLFAVIAAIFIWNTCW 265 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhna-iLLivV~~lf~~VaalfiWN~~w 265 (320)
+=.++-++..|+-+|--+..+.++. +-+++..+++..+.+++.|=.++
T Consensus 58 ~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~ 106 (169)
T PF06826_consen 58 LGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGR 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888999999888888866 56666666666666666665554
No 173
>PRK00036 primosomal replication protein N; Reviewed
Probab=23.97 E-value=46 Score=28.34 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=21.9
Q ss_pred ccCCCCcEEEEeEEEEeeecCcchhhhHHHHhhhccc
Q 020879 283 RTAKSGQFVKVTGVCNSTYSNRNFFVFYVLLLHSMQI 319 (320)
Q Consensus 283 R~AkdGQyVKVTGVVTC~~~~~~~~~~~~~~~~~~~~ 319 (320)
...+.|..|+|+|+.+|...+- .-|.||.-||
T Consensus 62 ~~l~~Gs~v~v~GFLa~~~~~~-----~~LVLHi~~I 93 (107)
T PRK00036 62 ADTPLGTEMQVQGFLAPARKDS-----VKVKLHLQQA 93 (107)
T ss_pred cccCCCCEEEEEEEEEECCCCC-----CcEEEEhHHe
Confidence 3478999999999999943333 3345565443
No 174
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=23.83 E-value=1.7e+02 Score=32.07 Aligned_cols=67 Identities=12% Similarity=0.311 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhh---hccchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCC
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFILG---AVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPD 279 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~FiL~---AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPD 279 (320)
|--++.|++++..++-|+.|-++.. -.++++..+++++++.+.+.+=.|.-.+.++++...-+..|.
T Consensus 79 f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~ 148 (903)
T PRK15122 79 FNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRT 148 (903)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3334455555555555666544331 113455555555555556666667777776666665554443
No 175
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.44 E-value=1.2e+02 Score=25.88 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=11.3
Q ss_pred CCCCcEEEEeEEEEee
Q 020879 285 AKSGQFVKVTGVCNST 300 (320)
Q Consensus 285 AkdGQyVKVTGVVTC~ 300 (320)
..|+.|+|++=.+...
T Consensus 59 L~~~~ylk~~i~l~~~ 74 (142)
T PRK07718 59 LKSGNFIRIQFKIETD 74 (142)
T ss_pred cCCCCEEEEEEEEEEC
Confidence 4568999988666543
No 176
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=23.38 E-value=1.1e+02 Score=30.80 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=9.9
Q ss_pred ccCCCCcEEEEeEE
Q 020879 283 RTAKSGQFVKVTGV 296 (320)
Q Consensus 283 R~AkdGQyVKVTGV 296 (320)
-+.+.|.-|++-||
T Consensus 128 ~GL~~Gs~Vr~~GV 141 (370)
T PLN03094 128 CGICVGTPVRIRGV 141 (370)
T ss_pred CCCCCCCceEEcCE
Confidence 34677777877776
No 177
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=23.33 E-value=1.4e+02 Score=25.39 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=36.9
Q ss_pred ccccccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q 020879 194 QNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTCWGRKAIT 271 (320)
Q Consensus 194 ~n~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~wgrr~l~ 271 (320)
...|+.+++-+ ||.--..+|=. -=.++-=++.|+++|+.-+..-.|.-.-.=.++...++..+.-|-.|+-+|-.+
T Consensus 19 ~~~A~ksi~~~-df~~~~~iPCf-R~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~~~ 94 (118)
T PF12597_consen 19 LSDAVKSIKLS-DFRNVHKIPCF-RDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRRKE 94 (118)
T ss_pred HHHHHHhcCHH-HHhHHhcCCcH-HHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777644 34211223311 111222233445555444443333333333444555667788999998855443
No 178
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=23.21 E-value=84 Score=30.47 Aligned_cols=70 Identities=19% Similarity=0.070 Sum_probs=0.0
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchH------------------------------HHH
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPI------------------------------LLI 246 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnai------------------------------LLi 246 (320)
.++.+.+|.+ .-+|++||++++.++.+.+.-++.-..+...+-... .++
T Consensus 215 ~~~~~a~E~k-nP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 293 (478)
T TIGR00913 215 LVALTAGEAA-NPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIF 293 (478)
T ss_pred HHHHHHHhhc-ChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 020879 247 VVLVLFAVIAAIFIWNTCWGR 267 (320)
Q Consensus 247 vV~~lf~~VaalfiWN~~wgr 267 (320)
.++++++...++..|-....|
T Consensus 294 ~~~~~~s~~~~~~~~~~~~sR 314 (478)
T TIGR00913 294 NAVILISVLSAANSSLYASSR 314 (478)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.21 E-value=1.4e+02 Score=27.87 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=13.3
Q ss_pred CCCCcEEEEeEEEEeeecCcc
Q 020879 285 AKSGQFVKVTGVCNSTYSNRN 305 (320)
Q Consensus 285 AkdGQyVKVTGVVTC~~~~~~ 305 (320)
.++||+| =-|.+-.+..+.+
T Consensus 59 V~eG~~V-~kG~~L~~ld~~~ 78 (423)
T TIGR01843 59 VREGDRV-KAGQVLVELDATD 78 (423)
T ss_pred eCCCCEe-cCCCeEEEEccch
Confidence 6788888 4566666665554
No 180
>COG3601 Predicted membrane protein [Function unknown]
Probab=23.05 E-value=1.3e+02 Score=28.18 Aligned_cols=50 Identities=26% Similarity=0.236 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhccchHHHHHH--------------HHHHHHHHHHHHHHhhhcc
Q 020879 217 VLWLVILIFVMGFIAGGFILGAVHNPILLIVV--------------LVLFAVIAAIFIWNTCWGR 267 (320)
Q Consensus 217 ilW~villf~mGliaG~FiL~AVhnaiLLivV--------------~~lf~~VaalfiWN~~wgr 267 (320)
.+=+++..|.||+.||-|++ +++|..+++.= +..+....+-++|+.-..+
T Consensus 40 ~iP~Lig~~~lGp~ag~~vl-lvk~iL~~l~~g~~~~~iG~~mNfiag~~fv~~~~~~~k~~ks~ 103 (186)
T COG3601 40 DIPALIGYFLLGPGAGIFVL-LVKNILLYLLSGPVGDPIGPPMNFIAGGSFVLIAALIYKKKKST 103 (186)
T ss_pred HhHHHHHHHHhccchHHHHH-HHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35578999999999998876 56777666543 3333444455667665553
No 181
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=23.03 E-value=1.5e+02 Score=28.97 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhhh
Q 020879 214 PKPVLWLVILIFVMGFIAGGFIL 236 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL 236 (320)
||.++|..+++++.+++.|.++.
T Consensus 94 ~~~al~~~~~l~~la~~lg~~L~ 116 (331)
T PRK12392 94 EKEALWNSIIVLLLAIGLGVWLG 116 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888876653
No 182
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=22.94 E-value=2.9e+02 Score=22.13 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=13.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 240 HNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 240 hnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
+.|.-+.+|.+++.+++++++|-..
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~ 94 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGR 94 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666655443
No 183
>PRK10591 hypothetical protein; Provisional
Probab=22.92 E-value=2.3e+02 Score=23.97 Aligned_cols=51 Identities=25% Similarity=0.516 Sum_probs=25.8
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhhhccc-------------hHHHHH-HHHHHHHHHHHHHHHhhhc
Q 020879 212 NFPKPVLWLVILIFVMGFIAGGFILGAVHN-------------PILLIV-VLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 212 ~~Pk~ilW~villf~mGliaG~FiL~AVhn-------------aiLLiv-V~~lf~~VaalfiWN~~wg 266 (320)
..||+ |+++=+.|.+.=+..+-++++ ++++|. -+++.-++|+.++|.+..+
T Consensus 6 dlPk~----VlilE~lGi~LLv~a~Lsindyl~lP~~l~~~~aai~mif~Gi~lmiPAav~ivWR~a~~ 70 (92)
T PRK10591 6 DLPKS----VLILEVLGMLLLVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLMLPAAVVIIWRVAKG 70 (92)
T ss_pred hCChh----HHHHHHHHHHHHHHHHHHHcccccCCccccCchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 47998 455555553332333345555 233333 3334455666666666554
No 184
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=22.87 E-value=2.5e+02 Score=25.90 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=39.9
Q ss_pred CCchhHH---HHHHHHHHHHhhhhhhhhhccch-----------HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcC
Q 020879 213 FPKPVLW---LVILIFVMGFIAGGFILGAVHNP-----------ILLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCH 277 (320)
Q Consensus 213 ~Pk~ilW---~villf~mGliaG~FiL~AVhna-----------iLLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ry 277 (320)
+||.-++ +..+.+++|.++|.|+--.|+.. .+-.++.++++++.+.++|-..++.+.+...+.--
T Consensus 6 lPR~w~~Qgv~~Gi~~a~GY~~Gv~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~WQ~~~r~lmg~~ 84 (208)
T PF15420_consen 6 LPRPWLFQGVVSGISAAIGYGLGVFLRWLWRRLGLPRPSWRPRRRLRWALAVAAAVVTVVALWRAARWQNELRALMGMP 84 (208)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5666332 23456778888888875554422 34455566666666666666677777777776633
No 185
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=22.76 E-value=1.6e+02 Score=32.01 Aligned_cols=34 Identities=3% Similarity=0.053 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 020879 240 HNPILLIVVLVLFAVIAAIFIWNTCWGRKAITDF 273 (320)
Q Consensus 240 hnaiLLivV~~lf~~VaalfiWN~~wgrr~l~~F 273 (320)
.+++.-+++++++.+.+++=.|.-.+.+|++...
T Consensus 86 ~~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L 119 (867)
T TIGR01524 86 DDLEATVIIALMVLASGLLGFIQESRAERAAYAL 119 (867)
T ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445556655555554443
No 186
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.57 E-value=74 Score=27.23 Aligned_cols=8 Identities=25% Similarity=0.214 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 020879 255 IAAIFIWN 262 (320)
Q Consensus 255 VaalfiWN 262 (320)
.+++|.++
T Consensus 21 ~~~~~~~~ 28 (142)
T PRK07718 21 TAALVLVM 28 (142)
T ss_pred HHHHhhhc
Confidence 34444444
No 187
>COG4129 Predicted membrane protein [Function unknown]
Probab=22.46 E-value=92 Score=30.76 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=38.9
Q ss_pred ccccccccccCccccccccCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 020879 194 QNQAVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 194 ~n~AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~ 263 (320)
-=.||-.+....+=|++..+-+. |.+++-++.| +-.|.+-- .+++.+.|+++++.++++++.|..
T Consensus 39 ~i~AV~~l~~t~~~s~~~~~~r~--~g~~iG~~~a--~l~~~l~g-~~~~~~~v~~~i~i~~~~~~~~~~ 103 (332)
T COG4129 39 GISAVLCLSPTIKRSLKRALQRL--LGNALGAILA--VLFFLLFG-QNPIAFGVVLLIIIPLLVLLKLEN 103 (332)
T ss_pred HHHHhhcccCcchHHHHHHHHHH--HHHHHHHHHH--HHHHHHcC-ccHHHHHHHHHHHHHHHHHHhccc
Confidence 34566667666555666433332 2222222222 22222333 899999999999999999998875
No 188
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=22.44 E-value=1.2e+02 Score=27.89 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=15.2
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhh
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILG 237 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~ 237 (320)
||.+.|..+++++++++.|.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~g~~l~~ 109 (293)
T PRK06080 86 PKQVKRAAIAFFGLAALLGLYLVA 109 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777777665543
No 189
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=22.39 E-value=1.9e+02 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020879 222 ILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIW 261 (320)
Q Consensus 222 illf~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiW 261 (320)
-.++.||++.|.+.+..=|- ...++..++.+++|-++++
T Consensus 61 G~~~i~~~i~gl~~~~~G~~-~~~~~~~ii~gliaeli~~ 99 (189)
T TIGR02185 61 GVIFIFGILLGLLFFLMGMY-WPMIISSIIGGLLADIIAS 99 (189)
T ss_pred cHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHH
Confidence 45678888888877766663 3344445555566665544
No 190
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.38 E-value=2.3e+02 Score=24.91 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhhhh------hccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 218 LWLVILIFVMGFIAGGFILG------AVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~------AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+|++|++....|++--.+.+ +-|=.-++++..+++.+++.+-+|.....
T Consensus 2 ir~liL~~~~~l~~~l~~sG~i~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~ 56 (182)
T PF09323_consen 2 IRFLILLGFGILLFYLILSGKILLYIHPRYIPLLYFAAILLLILAIVQLWRWFRP 56 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777766555554433322 23333455555566666666666665444
No 191
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=22.29 E-value=1.7e+02 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.040 Sum_probs=27.1
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHhhhc
Q 020879 235 ILGAVHNPILLIVVLVLFAVIAAIFIWNTCWG 266 (320)
Q Consensus 235 iL~AVhnaiLLivV~~lf~~VaalfiWN~~wg 266 (320)
+..-||=+-++||+++-++++.+-+-|+..+.
T Consensus 32 ~~~~~~~~s~lIV~GGt~~a~lis~p~~~~~~ 63 (271)
T PRK06926 32 FLSFIDLTSILIVTGGLCAALFISFSPKDLKL 63 (271)
T ss_pred hHHHhhHhHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34447788899999999999999999998886
No 192
>PF13063 DUF3925: Protein of unknown function (DUF3925)
Probab=22.22 E-value=44 Score=26.39 Aligned_cols=16 Identities=56% Similarity=1.036 Sum_probs=11.4
Q ss_pred eecCcch-hhhHHHHhh
Q 020879 300 TYSNRNF-FVFYVLLLH 315 (320)
Q Consensus 300 ~~~~~~~-~~~~~~~~~ 315 (320)
+.|||.| ||.|..+|.
T Consensus 8 ~isnrefyfvlymmll~ 24 (66)
T PF13063_consen 8 MISNREFYFVLYMMLLF 24 (66)
T ss_pred hhcccchHHHHHHHHHH
Confidence 5689997 567776654
No 193
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=22.17 E-value=49 Score=26.34 Aligned_cols=36 Identities=25% Similarity=0.493 Sum_probs=23.2
Q ss_pred HHHHhhhcchhhhhhhhcCC---------CcccccCCCCcEEEEe
Q 020879 259 FIWNTCWGRKAITDFISCHP---------DTDLRTAKSGQFVKVT 294 (320)
Q Consensus 259 fiWN~~wgrr~l~~Fv~ryP---------DadLR~AkdGQyVKVT 294 (320)
..||.....+.....-++.| ||+-+..+||+.|+|+
T Consensus 12 ~~~~s~~~t~~~~~l~~~~~~~~v~in~~dA~~lgi~~Gd~V~v~ 56 (115)
T cd02779 12 IIWQTAYHDQNNSEIAERVPLPYIEVNPEDAKREGLKNGDLVEVY 56 (115)
T ss_pred heecCCceeCChHHHHhhCCCCEEEECHHHHHHcCCCCCCEEEEE
Confidence 35777665444444444455 4566779999999984
No 194
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.83 E-value=1.9e+02 Score=31.27 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.2
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHhh------hcchhhhhhhhc
Q 020879 234 FILGAVHNPILLIVVLVLFAVIAAIFIWNTC------WGRKAITDFISC 276 (320)
Q Consensus 234 FiL~AVhnaiLLivV~~lf~~VaalfiWN~~------wgrr~l~~Fv~r 276 (320)
|+|++|==.+++..++.+++++..++-+|+. |.++.+.+|+++
T Consensus 461 ~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~~~~lvC~p~~~~~l~~~lD~ 509 (806)
T PF05478_consen 461 FLMAGVGLSFLFSWFLMLLVLFYFLVGGNTYTLVCQPLESNELFQVLDT 509 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcccHHHhcCC
Confidence 4566665555555555555555556666763 347889999987
No 195
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.76 E-value=89 Score=28.29 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcch
Q 020879 246 IVVLVLFAVIAAIFIWNTCWGRK 268 (320)
Q Consensus 246 ivV~~lf~~VaalfiWN~~wgrr 268 (320)
+|++++.+++++.|+-.+++-||
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 55667777788888888887665
No 196
>MTH00214 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=21.61 E-value=2e+02 Score=25.73 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=8.9
Q ss_pred HHhhhhhhhhhccchHHHH
Q 020879 228 GFIAGGFILGAVHNPILLI 246 (320)
Q Consensus 228 GliaG~FiL~AVhnaiLLi 246 (320)
++++|+++...-+|++..+
T Consensus 11 ~~~~~~~~v~~~~~P~~~~ 29 (168)
T MTH00214 11 GFLLGLMMVASSPSPYFGA 29 (168)
T ss_pred HHHHHHHHHHhCCCHHHHH
Confidence 4444555444444444333
No 197
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=21.41 E-value=66 Score=33.87 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=24.0
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHh
Q 020879 236 LGAVHNPILLIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 236 L~AVhnaiLLivV~~lf~~VaalfiWN~ 263 (320)
+...+++.|+++++++++++++|++|-.
T Consensus 19 ~~~~~ki~l~~~~~~~v~~~v~l~l~~~ 46 (545)
T COG1766 19 LTKKQKIVLLGAGAALVAVLVALLLWSR 46 (545)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHheecC
Confidence 4567888899999999999999999965
No 198
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=21.37 E-value=1.5e+02 Score=29.21 Aligned_cols=34 Identities=9% Similarity=0.193 Sum_probs=23.5
Q ss_pred cccccccCccccccccCCchhHHHHHHHHHHHHhh
Q 020879 197 AVTTITQEDDYSFRKNFPKPVLWLVILIFVMGFIA 231 (320)
Q Consensus 197 AVt~L~~~~~ysfr~~~Pk~ilW~villf~mGlia 231 (320)
+++.+.+|.+ .=+|++||++++.++.+.++-++.
T Consensus 253 ~~~~~a~E~k-nP~r~iPrAi~~s~~~v~~~Y~l~ 286 (501)
T TIGR00911 253 YLNFVTEEVK-NPYRTLPIAIIISMPIVTFIYVLT 286 (501)
T ss_pred HHhhhHHHhc-CchhhhHHHHHHHHHHHHHHHHHH
Confidence 4455666644 236899999999888776666554
No 199
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=21.34 E-value=1.2e+02 Score=23.85 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=4.5
Q ss_pred HHHHHhhhcchh
Q 020879 258 IFIWNTCWGRKA 269 (320)
Q Consensus 258 lfiWN~~wgrr~ 269 (320)
+++--+||+|+.
T Consensus 17 v~~~~~~~rr~~ 28 (75)
T PF14575_consen 17 VIIVIVCFRRCK 28 (75)
T ss_dssp HHHHHCCCTT--
T ss_pred heeEEEEEeeEc
Confidence 333335555444
No 200
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=21.34 E-value=2.3e+02 Score=27.03 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=12.6
Q ss_pred ccCCCCcEEEEeEEEEeee
Q 020879 283 RTAKSGQFVKVTGVCNSTY 301 (320)
Q Consensus 283 R~AkdGQyVKVTGVVTC~~ 301 (320)
|-.+.|++|+|-|+ +++-
T Consensus 128 rpf~vGD~I~i~~~-~G~V 145 (286)
T PRK10334 128 RPFRAGEYVDLGGV-AGTV 145 (286)
T ss_pred CCCCCCCEEEECCE-EEEE
Confidence 66799999998653 3443
No 201
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=21.33 E-value=1.7e+02 Score=27.10 Aligned_cols=23 Identities=30% Similarity=0.428 Sum_probs=14.2
Q ss_pred hhccchHHHHHHHHHHHHHHHHH
Q 020879 237 GAVHNPILLIVVLVLFAVIAAIF 259 (320)
Q Consensus 237 ~AVhnaiLLivV~~lf~~Vaalf 259 (320)
.+.+++++++++++++++++.++
T Consensus 18 l~~~~~~l~~~~~~~~~F~~~ml 40 (284)
T PF12805_consen 18 LLFPYPWLLILVLALLTFFFGML 40 (284)
T ss_pred HHhhccHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665554
No 202
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=21.33 E-value=2.6e+02 Score=26.06 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhcCCCcccccCCCCc
Q 020879 244 LLIVVLVLFAVIAAIFIWNTCWGRKAITDFISCHPDTDLRTAKSGQ 289 (320)
Q Consensus 244 LLivV~~lf~~VaalfiWN~~wgrr~l~~Fv~ryPDadLR~AkdGQ 289 (320)
++.+.++.+...++..+||-++ +|++.+-.+|-|+ |-...|+
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~-D~~iD~~~~Rt~~---RPl~sG~ 79 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGI-ERDIDKVMSRTSK---RPTPVGL 79 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchH-hcCCCCCCCCCCC---CCcCCCC
Confidence 3444445555577789999887 3555554444333 5555554
No 203
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.30 E-value=2.4e+02 Score=27.36 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCchhHHHHHHHHHHHHhhhhhhhh--hccchHHHHHHHHHHHHHHHHHHHHhhhc----chhhhhhh
Q 020879 213 FPKPVLWLVILIFVMGFIAGGFILG--AVHNPILLIVVLVLFAVIAAIFIWNTCWG----RKAITDFI 274 (320)
Q Consensus 213 ~Pk~ilW~villf~mGliaG~FiL~--AVhnaiLLivV~~lf~~VaalfiWN~~wg----rr~l~~Fv 274 (320)
||..+-=+++.++++.++...+... ..+++.-.....+++.+.++.|+....|| |.-+..=.
T Consensus 21 ~PFSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~l~~~~~~~~~~y~~F~~~WGlNY~R~pl~~~l 88 (318)
T PF12725_consen 21 FPFSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFKLLNILFFLSVLYFLFYLLWGLNYYRPPLSERL 88 (318)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCcCHHHHc
Confidence 7777644444444444444333332 22233221133333444455555666677 55444433
No 204
>PF01184 Grp1_Fun34_YaaH: GPR1/FUN34/yaaH family; InterPro: IPR000791 Several uncharacterised proteins are evolutionary related, including Yarrowia lipolytica (Candida lipolytica) glyxoxylate pathway regulator GPR1; yeast protein FUN34 and hypothetical proteins YCR10c and YDR384c; fission yeast hypothetical protein SpAC5D6.09c; Escherichia coli hypothetical protein yaaH; and Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) hypothetical protein Mth215. They are hydrophobic proteins that seem to contain six transmembrane regions and which could therefore be involved in transport. They have from 188 to 283 amino acids.; GO: 0016020 membrane
Probab=21.21 E-value=1.6e+02 Score=26.78 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020879 245 LIVVLVLFAVIAAIFIWNT 263 (320)
Q Consensus 245 LivV~~lf~~VaalfiWN~ 263 (320)
+..+...++++++++.|=+
T Consensus 167 l~~~gG~~g~i~~~~a~Y~ 185 (211)
T PF01184_consen 167 LLKAGGAFGFIAGILAWYI 185 (211)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655533
No 205
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=21.14 E-value=1.9e+02 Score=25.53 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhccch--HHHHHHHHHHHHHH
Q 020879 219 WLVILIFVMGFIAGGFILGAVHNP--ILLIVVLVLFAVIA 256 (320)
Q Consensus 219 W~villf~mGliaG~FiL~AVhna--iLLivV~~lf~~Va 256 (320)
=..+-++++|+-+|.=+..+.++. .+++.+++++..+.
T Consensus 59 GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~ 98 (154)
T TIGR01625 59 GLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVP 98 (154)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 345667778999999888888773 24444444444333
No 206
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=21.02 E-value=88 Score=32.85 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=21.5
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHHHH
Q 020879 236 LGAVHNPILLIVVLVLFAVIAAIFIWN 262 (320)
Q Consensus 236 L~AVhnaiLLivV~~lf~~VaalfiWN 262 (320)
|...+..++++++++++++++++++|.
T Consensus 22 l~~~r~~~l~~~~~~~va~~~~~~~~~ 48 (552)
T PRK07193 22 LRGNRKLILLALLALLVAAAIVLSLWR 48 (552)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 356777888888888888888888885
No 207
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=20.96 E-value=2.3e+02 Score=30.21 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHHHH-HHHHHHhhhcchhhhhhhhcC--CCcccccCCCC
Q 020879 218 LWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAVIA-AIFIWNTCWGRKAITDFISCH--PDTDLRTAKSG 288 (320)
Q Consensus 218 lW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~Va-alfiWN~~wgrr~l~~Fv~ry--PDadLR~AkdG 288 (320)
.|-++++..+.|.+.-|+++.++-+++=-++..+++.++ ++|+|. |.-|...+|-+.- +++..++++|.
T Consensus 210 ~~p~~lvag~sfti~q~l~a~~lGPelPdIig~lvsl~i~~~flk~--~~PK~~~~~~~~~~~~~~~~~~~~~~ 281 (522)
T COG1620 210 VWPAILVAGLSFTIPQFLLANFLGPELPDIIGGLVSLGILALFLKK--WQPKRIWRFPGKEGVSAEWVVSLKPL 281 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hCCchhhcccccccCCcccccccCcc
Confidence 455566666668888888888888999888888877655 566666 9999999998877 67777777754
No 208
>PRK15049 L-asparagine permease; Provisional
Probab=20.82 E-value=3e+02 Score=27.62 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhcchhhhhhhhcCCCcccccCCC
Q 020879 255 IAAIFIWNTCWGRKAITDFISCHPDTDLRTAKS 287 (320)
Q Consensus 255 VaalfiWN~~wgrr~l~~Fv~ryPDadLR~Akd 287 (320)
+..++.|=.. ++| ..+....-||.|.++-+.
T Consensus 459 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 489 (499)
T PRK15049 459 ILLVIGWFGV-RKR-VAEIHSTAPVVEEDEEKQ 489 (499)
T ss_pred HHHHHHHHHH-hcc-cccccCCCCccccccccc
Confidence 4444455332 233 466777778888877553
No 209
>MTH00213 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=20.71 E-value=1.6e+02 Score=28.56 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=28.4
Q ss_pred cCCchhHHHHHHHHHHH---HhhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Q 020879 212 NFPKPVLWLVILIFVMG---FIAGGFILGAVHNPILLIVVLVLFAVIAAIFIW 261 (320)
Q Consensus 212 ~~Pk~ilW~villf~mG---liaG~FiL~AVhnaiLLivV~~lf~~VaalfiW 261 (320)
|.=..++|.+..++.+. ++.++=++++++=-|-.=+|.+||.+|+-++=|
T Consensus 22 NpVhSaL~LIlvFi~iAgLyilLgAeFLA~iQILVYVGAIaVLFLFVIMLLn~ 74 (239)
T MTH00213 22 NFLASVFWLILTFIGSSGLFIVLGMEFLGLIFLIVYVGAICIIFLFVIMMIPG 74 (239)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 33345577776666555 556666666665444444555555555555433
No 210
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=20.63 E-value=2.5e+02 Score=24.26 Aligned_cols=40 Identities=15% Similarity=0.402 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 020879 225 FVMGFIAGGFILGAVHNPILLIVVLVLFAVIAAIFIWNTC 264 (320)
Q Consensus 225 f~mGliaG~FiL~AVhnaiLLivV~~lf~~VaalfiWN~~ 264 (320)
..+.|+.|.+.+..-++--.+..++.+++++..+..|=+.
T Consensus 76 ~~~a~v~g~~~l~~~~~~r~v~l~L~~~~~~~~~v~wa~~ 115 (155)
T PF07344_consen 76 YGAAFVLGVLLLCCCSCLRWVCLVLNIVGIVTLLVVWALM 115 (155)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344777777666644444444556666666666666543
No 211
>PF09990 DUF2231: Predicted membrane protein (DUF2231); InterPro: IPR019251 This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=20.57 E-value=3.1e+02 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.826 Sum_probs=7.9
Q ss_pred HHHHHHHhhhcch
Q 020879 256 AAIFIWNTCWGRK 268 (320)
Q Consensus 256 aalfiWN~~wgrr 268 (320)
+++.+||..+++|
T Consensus 55 ~~l~~w~~~~r~~ 67 (104)
T PF09990_consen 55 LLLAIWRWLWRRR 67 (104)
T ss_pred HHHHHHHHHHHhC
Confidence 3445787777654
No 212
>PRK00068 hypothetical protein; Validated
Probab=20.50 E-value=1.9e+02 Score=32.84 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=13.3
Q ss_pred HhhhhhhhhhccchHHHHHHHHHHHHHHHHH
Q 020879 229 FIAGGFILGAVHNPILLIVVLVLFAVIAAIF 259 (320)
Q Consensus 229 liaG~FiL~AVhnaiLLivV~~lf~~Vaalf 259 (320)
+.|.+|+..++++..-|-++.++..++++++
T Consensus 269 i~a~~~~~~~~~~~~rlp~i~~~l~v~s~~v 299 (970)
T PRK00068 269 ICAIAVFSSIVLRDLRIPAIASVLLILSSII 299 (970)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444555555554444333333333333333
No 213
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=20.47 E-value=2.6e+02 Score=28.79 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.7
Q ss_pred ccccccccCCchhHHHHHHHHHHH
Q 020879 205 DDYSFRKNFPKPVLWLVILIFVMG 228 (320)
Q Consensus 205 ~~ysfr~~~Pk~ilW~villf~mG 228 (320)
..|+.+--+++.+++-...+++.|
T Consensus 216 ~~~~~~~~~sr~~~~~~~~~~~~g 239 (679)
T TIGR02916 216 PDWSVRIAVSREMAFHSATLLGAG 239 (679)
T ss_pred cCCCcceeechHHHHHHHHHHHHH
Confidence 456767779999988888877776
No 214
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=20.46 E-value=1.9e+02 Score=30.55 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=24.7
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHHHHH
Q 020879 212 NFPKPVLWLVILIFVMGFIAGGFILGAVHNPILLIVVLVLFAV 254 (320)
Q Consensus 212 ~~Pk~ilW~villf~mGliaG~FiL~AVhnaiLLivV~~lf~~ 254 (320)
.+-|..+|.+++.+++|+++.-++. |++++++++++++..
T Consensus 617 ~~~k~~l~~~l~~~ii~~~~a~~~~---~~~~i~~~~~~~~i~ 656 (679)
T TIGR01654 617 RTYKQYLVSNLAVYVFILILALIFS---HAFYILLLFAVIFLL 656 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Confidence 3557778888888877776665544 565555544444433
No 215
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=20.35 E-value=1.4e+02 Score=28.83 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=7.5
Q ss_pred hhhhhhhcCC
Q 020879 269 AITDFISCHP 278 (320)
Q Consensus 269 ~l~~Fv~ryP 278 (320)
-..+|+.|.|
T Consensus 245 ~~~~~l~~iP 254 (399)
T PRK10573 245 REQRLLLRLP 254 (399)
T ss_pred HHHHHHhcCC
Confidence 4567888888
No 216
>PF12648 TcpE: TcpE family
Probab=20.27 E-value=2.8e+02 Score=22.49 Aligned_cols=9 Identities=22% Similarity=0.191 Sum_probs=4.4
Q ss_pred chhhhhhhh
Q 020879 267 RKAITDFIS 275 (320)
Q Consensus 267 rr~l~~Fv~ 275 (320)
.+-+..|+.
T Consensus 81 GK~~~~fl~ 89 (108)
T PF12648_consen 81 GKKPHRFLW 89 (108)
T ss_pred CCCHHHHHH
Confidence 444555544
No 217
>PRK13664 hypothetical protein; Provisional
Probab=20.19 E-value=87 Score=24.81 Aligned_cols=10 Identities=20% Similarity=0.614 Sum_probs=5.6
Q ss_pred hhhhhhcCCC
Q 020879 270 ITDFISCHPD 279 (320)
Q Consensus 270 l~~Fv~ryPD 279 (320)
-.+|++.-|+
T Consensus 32 ~Kkfl~nkp~ 41 (62)
T PRK13664 32 HKKFLANKPE 41 (62)
T ss_pred HHHHhcCCCC
Confidence 4456666554
No 218
>PRK11513 cytochrome b561; Provisional
Probab=20.14 E-value=1.3e+02 Score=26.41 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=25.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhh---hccchHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020879 214 PKPVLWLVILIFVMGFIAGGFILG---AVHNPILLIVVLVLFAVIAAIFIWNTCWGR 267 (320)
Q Consensus 214 Pk~ilW~villf~mGliaG~FiL~---AVhnaiLLivV~~lf~~VaalfiWN~~wgr 267 (320)
-|..=|++.+++...++.|.+.-. ..++ .+..+=..+=..|.+++++-.+|+.
T Consensus 9 ~~~lHWl~a~li~~~~~~~~~~~~~~~~~~~-~~~~~H~s~G~~vl~L~v~Rl~~r~ 64 (176)
T PRK11513 9 QIGIHWLVFLLVIVAYCAMEFRGFFPRSDRP-LINMIHVSCGISILVLMVVRLLLRL 64 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345569877777777766543211 1111 1111111222234556677777764
No 219
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=20.14 E-value=2.9e+02 Score=23.53 Aligned_cols=49 Identities=27% Similarity=0.579 Sum_probs=25.5
Q ss_pred cCCchhHHHHHHHHHHH--Hhhhhhhhhhccch-------------HHHHHHHH-HHHHHHHHHHHHhhhc
Q 020879 212 NFPKPVLWLVILIFVMG--FIAGGFILGAVHNP-------------ILLIVVLV-LFAVIAAIFIWNTCWG 266 (320)
Q Consensus 212 ~~Pk~ilW~villf~mG--liaG~FiL~AVhna-------------iLLivV~~-lf~~VaalfiWN~~wg 266 (320)
.+||. |+++=+.| +++.++ -++|+. +++|++++ +.-+.|+.++|-+..+
T Consensus 6 ~LPk~----VlilE~lG~~LLv~a~--Lsin~~l~LP~~l~~~~aai~MIf~Gi~lMlPAav~ivWR~a~~ 70 (96)
T PF07214_consen 6 DLPKP----VLILEVLGMILLVLAY--LSINDYLSLPAPLSTPTAAIAMIFVGIGLMLPAAVNIVWRVAKG 70 (96)
T ss_pred hCChH----HHHHHHHHHHHHHHHH--HHHcccccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47898 44554555 555554 346765 33344433 3334455555655544
No 220
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=20.03 E-value=82 Score=31.94 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=28.2
Q ss_pred hhhhhhhcCCCccccc-------------------CCCCcEEEEeEEEEeeecC
Q 020879 269 AITDFISCHPDTDLRT-------------------AKSGQFVKVTGVCNSTYSN 303 (320)
Q Consensus 269 ~l~~Fv~ryPDadLR~-------------------AkdGQyVKVTGVVTC~~~~ 303 (320)
+..+|+++||+.|=|+ -.||+ -||-=+|.||-+.
T Consensus 9 ~~~~f~~~~p~~dgr~v~iai~dtgvd~~~~~lq~t~~g~-~ki~d~~d~t~~g 61 (412)
T cd04857 9 GALRFLQKYPEYDGRGVLIAILDTGVDPGAPGLQVTTDGK-PKIIDIIDCTGSG 61 (412)
T ss_pred hHHHHHHHCcCCCCCCcEEEEecCCCCCCCCcccccCCCC-CeEEEEEeCCCCC
Confidence 6789999999998554 45888 5999999999775
Done!